Citrus Sinensis ID: 012720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MAASNSIEPRLFLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHcccccccccccccccccEEcccHHHHHccccEEEEEcccHHHHHHHHHHHccccccccEEEEEccccccccccHHHHHHHHHccccccEEEEEccccHHHHHcccccEEEEccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccccHHHHHHccccccHHHHHHHccccEEcHHcHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccccccccccccccEEEEccccEcccccccccEEEEEEEcccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHccccHHHcccccccccEEEcccHHHHHHcccEEEEEEcHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHcccccccEEEEEcHcHHHHHHHccccEEEEEcccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHccccccc
Coil and Loop (DISEMBL)
maasnsieprlflnpifttstttnsstslHIQNfklklphfptknptlvftlnsssgsattnnnndntiitpypddpdpepvsavsseirtrdgrdrRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAvcqsinekhcncryfpeqklpenviaTTDAKTALLGADyclhampvqfsssflegisdyvdpglpfislskglelntLRMMSQIIPqalrnprqpfialsgpSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHlristssdvtGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATkmgakpatitglsgtgdIMLTCFVNLsrnrtvgvrlgsgekLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVI
Flexible Loop (DISEMBL)
maasnsieprlflNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNTIITpypddpdpepVSAVsseirtrdgrdrrkivkvaweklvrwsrtwrskaktdilertnkVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLaskhlristssDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVI
Low Complexity Region (SEG)
MAASNSIEPRLFLNPIFttstttnsstsLHIQNFKLKLPHFPTKNPTLVFtlnsssgsattnnnndntIITpypddpdpepVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVI
Disordered region (IsUnstruct)
**********LFLNPIFTTST*****TSLHIQNFKLKLPHFPTKNPTLVFT***********************************************KIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLE********
Disordered Region (DISOPRED)
**********LFLNPIFTT*************NFKLKLPHFPTKNPTLVFTLNSS***********************************************VAWEKLVR*******************VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLP***
Disordered Region (DISEMBL)
********PRLFLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVI
Disordered Region (DISPRO)
*************************STSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNT***PYPD*****PVSAVSS**RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASNSIEPRLFLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSATTNNNNDNTIITPYPDDPDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q949Q0	420	Glycerol-3-phosphate dehy	yes	no	0.827	0.902	0.845	0.0
Q8H2J9	440	Glycerol-3-phosphate dehy	yes	no	0.792	0.825	0.804	1e-166
C4XLT6	330	Glycerol-3-phosphate dehy	yes	no	0.705	0.978	0.430	3e-67
Q04VF9	335	Glycerol-3-phosphate dehy	yes	no	0.703	0.961	0.393	3e-65
Q04Y15	335	Glycerol-3-phosphate dehy	yes	no	0.703	0.961	0.393	4e-65
A1V9Y4	330	Glycerol-3-phosphate dehy	yes	no	0.705	0.978	0.4	4e-65
P61742	335	Glycerol-3-phosphate dehy	yes	no	0.703	0.961	0.4	4e-65
Q8EZB6	335	Glycerol-3-phosphate dehy	yes	no	0.703	0.961	0.403	4e-65
P61739	330	Glycerol-3-phosphate dehy	yes	no	0.705	0.978	0.4	4e-65
B0SKD9	333	Glycerol-3-phosphate dehy	yes	no	0.705	0.969	0.414	1e-64

>sp|Q949Q0|GPDA2_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic OS=Arabidopsis thaliana GN=GLY1 PE=1 SV=1

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/381 (84%), Positives = 350/381 (91%), Gaps = 2/381 (0%)

Query: 77  PDPEPVSAVSSEIRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGG 136
           P+ + +S     I T   RD+RK+V++AWEKLVRWSR+ R+KAKTD+LERT KVVVLGGG
Sbjct: 39  PEADSISGPPDIINTN--RDQRKVVRIAWEKLVRWSRSLRAKAKTDVLERTRKVVVLGGG 96

Query: 137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA 196
           SFGTAMAAHVA +K  L+V ML+RD  VCQSINE H NC+YFPE KLPENVIATTDAK A
Sbjct: 97  SFGTAMAAHVARRKEGLEVNMLVRDSFVCQSINENHHNCKYFPEHKLPENVIATTDAKAA 156

Query: 197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR 256
           LL ADYCLHA+PVQFSSSFLEGI+DYVDPGLPFISLSKGLELNTLRMMSQIIP AL+NPR
Sbjct: 157 LLDADYCLHAVPVQFSSSFLEGIADYVDPGLPFISLSKGLELNTLRMMSQIIPIALKNPR 216

Query: 257 QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAG 316
           QPF+ALSGPSFALELMN LPTAMVVASKD+KLANAVQQLLAS +LRI+TSSDVTGVEIAG
Sbjct: 217 QPFVALSGPSFALELMNNLPTAMVVASKDKKLANAVQQLLASSYLRINTSSDVTGVEIAG 276

Query: 317 ALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLT 376
           ALKNVLAIAAGIV GMNLGNNSMAALV+QGCSEIRWLATKMGAKP TITGLSGTGDIMLT
Sbjct: 277 ALKNVLAIAAGIVDGMNLGNNSMAALVSQGCSEIRWLATKMGAKPTTITGLSGTGDIMLT 336

Query: 377 CFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR 436
           CFVNLSRNRTVGVRLGSGE LDDIL+SMNQVAEGV+TAGAVIALAQKYNVK+PVLTAVA+
Sbjct: 337 CFVNLSRNRTVGVRLGSGETLDDILTSMNQVAEGVATAGAVIALAQKYNVKLPVLTAVAK 396

Query: 437 IIDNELTPKKAVLELMSLPQV 457
           IIDNELTP KAVLELM+LPQ+
Sbjct: 397 IIDNELTPTKAVLELMNLPQI 417

Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids. Required for activation of systemic acquired resistance (SAR). Provision of glycerol-3-phosphate may be involved in generating lipid signals necessary for mediating defense responses and SAR.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8

>sp|Q8H2J9|GPDA_ORYSJ Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0229800 PE=2 SV=3

 Score =  584 bits (1506), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 292/363 (80%), Positives = 329/363 (90%)

Query: 95  RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLK 154
           ++RR++V+ AWEKLVRWSR+WR + ++D++E T KVVVLGGGSFGTAMAA VA KK+ L+
Sbjct: 75  KERRRVVRKAWEKLVRWSRSWRRRNRSDVVETTRKVVVLGGGSFGTAMAAQVAAKKADLE 134

Query: 155 VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS 214
           V ML+RD  VC+SIN  H NC+Y  + +LPEN+ ATT A  AL GAD+C HA+PVQFSSS
Sbjct: 135 VSMLLRDDLVCRSINHSHINCKYLRDHRLPENITATTSASDALAGADFCFHAVPVQFSSS 194

Query: 215 FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274
           FLEGIS +VDP LPFISLSKGLELNTLR MSQIIPQAL NPRQPFI LSGPSFA+ELMNK
Sbjct: 195 FLEGISTHVDPKLPFISLSKGLELNTLRTMSQIIPQALGNPRQPFIVLSGPSFAIELMNK 254

Query: 275 LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL 334
           LPTAMVVASKD+KLA AVQQLLAS +LRISTS+DVTGVEIAGALKNVLAIAAGIV GM+L
Sbjct: 255 LPTAMVVASKDKKLAAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAAGIVEGMHL 314

Query: 335 GNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 394
           GNN MAALVAQGCSEIRWLATKMGAKP T++GLSG+GDIMLTCFVNLSRNR VG+RLGSG
Sbjct: 315 GNNCMAALVAQGCSEIRWLATKMGAKPTTLSGLSGSGDIMLTCFVNLSRNRNVGLRLGSG 374

Query: 395 EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL 454
           EKLD+I++SMNQVAEGVSTAGAVIALAQKY+VKMPVLTAVARIIDNELTPKKAV+ELM+L
Sbjct: 375 EKLDEIMNSMNQVAEGVSTAGAVIALAQKYHVKMPVLTAVARIIDNELTPKKAVMELMNL 434

Query: 455 PQV 457
           PQV
Sbjct: 435 PQV 437

Required to supply glycerol-3-phosphate in the chloroplast for the synthesis of glycerolipids.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

>sp|C4XLT6|GPDA_DESMR Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=gpsA PE=3 SV=1

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 140/325 (43%), Positives = 197/325 (60%), Gaps = 2/325 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+GGGS+GT +A   A K   L   + +R+ AV   I     N  Y P +KL + + 
Sbjct: 2   KIAVIGGGSWGTTLADLAAKKG--LDARLWVREQAVMNEIRSSRENSWYLPGRKLSDQLE 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
            +TD      G  + + A+P QF  +  +    Y+      I  SKG+EL+TL  MSQ+ 
Sbjct: 60  VSTDPAAVAEGVSHFVFAVPCQFIRAAYQRFIKYLPKNAVVICASKGIELDTLMTMSQVC 119

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
             AL + +  F  LSGPSFA E++ ++PTA+ +A KD+K A  VQ+ L++ + RI T++D
Sbjct: 120 QDALASIKPRFAMLSGPSFAYEVIREMPTAVTLACKDKKAAKDVQEALSTPYFRIYTTTD 179

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVE+ GA+KN++AIAAG+  G+  G ++ AAL+ +G  E+  L   MG    T  GLS
Sbjct: 180 VRGVELGGAIKNIVAIAAGVADGLGFGGDARAALITRGLHEMSRLGKAMGGDRQTFMGLS 239

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
           G GD++LTC  +LSRNR VG+RL  G+KL DIL+ M  VAEGV TA AV AL QK  V+M
Sbjct: 240 GMGDLVLTCTGDLSRNRQVGLRLAKGQKLLDILADMKMVAEGVKTAEAVHALGQKLGVEM 299

Query: 429 PVLTAVARIIDNELTPKKAVLELMS 453
           P+   V  I+  +  P KAV ELM+
Sbjct: 300 PITEQVYAILYKDKDPSKAVYELMT 324

Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) (taxid: 573370)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q04VF9|GPDA_LEPBJ Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gpsA PE=3 SV=1

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 201/325 (61%), Gaps = 3/325 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GSFGTA+ + +A+K  ++ ++   R+ +  +SIN  H N ++ P+  LPE + 
Sbjct: 2   KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQIESINRNHINNKHLPDFTLPEKLT 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+ D +T + G D  + + P    +  L  I +Y+   +P +S SKG+E  TLR++S+I 
Sbjct: 60  ASKDLRTVVQGKDMIVSSPPSHALTEILREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L      +++ LSGPSFA E++ K+PT + +AS+    A  VQ++ +  + R   + 
Sbjct: 120 ESELPGKYHSYLSYLSGPSFAKEIIQKVPTIVSIASRSETTARKVQEIFSFLYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ G+LKNV+A+AAG+  G+  G N+ AAL+ +G +EI  +  K+GA P T  G 
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
           SG GD++LTC    SRNRTVG RLG GE L+ ILS MN+VAEG+ T  +   L+QK  ++
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSGMNEVAEGIKTTQSAYELSQKLGIE 299

Query: 428 MPVLTAVARIIDNELTPKKAVLELM 452
           M +   V +++  +  PK+ V +LM
Sbjct: 300 MAITNEVYKMLYEDKNPKEVVKDLM 324

Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q04Y15|GPDA_LEPBL Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gpsA PE=3 SV=1

 Score =  249 bits (636), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 201/325 (61%), Gaps = 3/325 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GSFGTA+ + +A+K  ++ ++   R+ +  +SIN  H N ++ P+  LPE + 
Sbjct: 2   KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQIESINRNHINNKHLPDFTLPEKLT 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+ D +T + G D  + + P    +  L  I +Y+   +P +S SKG+E  TLR++S+I 
Sbjct: 60  ASKDLRTVVQGKDMIVSSPPSHALTEILREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L      +++ LSGPSFA E++ K+PT + +AS+    A  VQ++ +  + R   + 
Sbjct: 120 ESELPGKYHSYLSYLSGPSFAKEIIQKVPTIVSIASRSETTARKVQEIFSFLYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ G+LKNV+A+AAG+  G+  G N+ AAL+ +G +EI  +  K+GA P T  G 
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
           SG GD++LTC    SRNRTVG RLG GE L+ ILS MN+VAEG+ T  +   L+QK  ++
Sbjct: 240 SGMGDLILTCCGGQSRNRTVGFRLGKGETLEQILSGMNEVAEGIKTTQSAYELSQKLGIE 299

Query: 428 MPVLTAVARIIDNELTPKKAVLELM 452
           M +   V +++  +  PK+ V +LM
Sbjct: 300 MAITNEVYKMLYEDKNPKEVVKDLM 324

Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|A1V9Y4|GPDA_DESVV Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=gpsA PE=3 SV=1

 Score =  249 bits (635), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/325 (40%), Positives = 202/325 (62%), Gaps = 2/325 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLGGGS+GTA+A  +A K   +++++  RDPAV + +N  H N RY     L E + 
Sbjct: 2   KIAVLGGGSWGTALAHLLAGKGEDVRLWV--RDPAVVEGVNRDHENPRYLKGLHLHEALR 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           AT DA  AL GAD  L  +P Q + S L  +   +  G+  +S SKG+E + LR + +++
Sbjct: 60  ATCDAGEALEGADILLSVVPCQQTRSVLRSLRPRLKSGMVVVSASKGIETDGLRTVGEMV 119

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L      +  +SGPSFA E++  +PTA+V+   DR L   ++++ ++   R  + +D
Sbjct: 120 EEELAGLAPRYAVISGPSFAAEVVAGMPTAVVLGCADRDLGGTLREVFSTPTFRTYSCTD 179

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVE+ GA+KNV+AIAAG+  G+  G+N+ A L+ +G +E+  L   +GA+ +T  GLS
Sbjct: 180 VRGVELGGAVKNVIAIAAGLSDGLGFGSNARAGLITRGLAEMGRLGVALGARASTFMGLS 239

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
           G GD++LTC  +LSRNR VG+RL +G+ LD I++ M  VAEGV T  AV ALA++    +
Sbjct: 240 GLGDLVLTCTGDLSRNRQVGLRLAAGQGLDAIVAGMGMVAEGVKTTEAVHALARREGADL 299

Query: 429 PVLTAVARIIDNELTPKKAVLELMS 453
           P+  A+  ++ +   P+  V ELM+
Sbjct: 300 PITRAMYAVLHDGRDPRDMVQELMT 324

Desulfovibrio vulgaris subsp. vulgaris (strain DP4) (taxid: 391774)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|P61742|GPDA_LEPIC Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=gpsA PE=3 SV=1

 Score =  249 bits (635), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/325 (40%), Positives = 200/325 (61%), Gaps = 3/325 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GSFGTA+ + +A+K  ++ ++   R+ +  +SIN  H N ++ P   LPE + 
Sbjct: 2   KIGVIGSGSFGTALGSLLADKGYEVTLWC--RNDSQVESINRNHINNKHLPNFTLPEKLT 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+ D +  + G D  + + P    S  L  I +Y+   +P +S SKG+E  TLR++S+I 
Sbjct: 60  ASKDLRNVVQGKDMIVSSPPSHALSEVLREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L      +++ LSGPSFA E++ K+PT + +ASK+   A  VQ++ +  + R   + 
Sbjct: 120 ESELPEKYHSYLSYLSGPSFAKEIIQKVPTIVSIASKNETTARKVQEIFSFLYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ G+LKNV+A+AAG+  G+  G N+ AAL+ +G +EI  +  K+GA P T  G 
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
           SG GD++LTC    SRNRTVG RLG GE L+ ILSSMN+VAEGV T  +   L+QK  ++
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSSMNEVAEGVKTTQSAYELSQKLGIE 299

Query: 428 MPVLTAVARIIDNELTPKKAVLELM 452
           M +   V +++     P++ V +LM
Sbjct: 300 MAITNEVYKMLYEGKNPREVVKDLM 324

Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q8EZB6|GPDA_LEPIN Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=gpsA PE=3 SV=1

 Score =  249 bits (635), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 199/325 (61%), Gaps = 3/325 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GSFGTA+ + +A+K  +  V +  R+ +  +SIN  H N ++ P   LPE + 
Sbjct: 2   KIGVIGSGSFGTALGSLLADKGYE--VILWCRNDSQVESINRNHINNKHLPNFTLPEKLT 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+ D +  + G D  + + P    S  L  I +Y+   +P +S SKG+E  TLR++S+I 
Sbjct: 60  ASKDLRNVVQGKDMIVSSPPSHALSEVLREIKEYLPEKVPIVSASKGIENGTLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L      +++ LSGPSFA E++ K+PT + +ASK+   A  VQ++ +  + R   + 
Sbjct: 120 ESELPEKYHSYLSYLSGPSFAKEIIQKVPTIVSIASKNETTARKVQEIFSFLYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ G+LKNV+A+AAG+  G+  G N+ AAL+ +G +EI  +  K+GA P T  G 
Sbjct: 180 DVIGVEVGGSLKNVIALAAGVSDGLGFGQNTRAALITRGLNEITKIGLKLGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
           SG GD++LTC    SRNRTVG RLG GE L+ ILSSMN+VAEGV T  +   L+QK  ++
Sbjct: 240 SGMGDLILTCCGEQSRNRTVGFRLGKGETLEQILSSMNEVAEGVKTTQSAYELSQKLGIE 299

Query: 428 MPVLTAVARIIDNELTPKKAVLELM 452
           M +   V +++     P++ V +LM
Sbjct: 300 MAITNEVYKMLYEGKNPREVVKDLM 324

Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|P61739|GPDA_DESVH Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gpsA PE=3 SV=1

 Score =  249 bits (635), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/325 (40%), Positives = 200/325 (61%), Gaps = 2/325 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLGGGS+GTA+A  +A K   +++++  RDPAV + +N  H N RY     L E + 
Sbjct: 2   KIAVLGGGSWGTALAHLLAGKGEDVRLWV--RDPAVVEGVNRDHENPRYLKGLHLHEALR 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           AT DA  AL GAD  L  +P Q + + L  +   +  G+  +S SKG+E + LR + +++
Sbjct: 60  ATCDAGEALEGADILLSVVPCQQTRTVLRSLRPRLKTGMVVVSASKGIETDGLRTVGEMV 119

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
              L      +  +SGPSFA E++  +PTA+V+   DR L   ++++ ++   R  + +D
Sbjct: 120 EDELAGLAPRYAVISGPSFAAEVVAGMPTAVVLGCADRDLGGTLREVFSTPTFRTYSCTD 179

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVE+ GA+KNV+AIAAG+  G+  G+N+ A L+ +G +E+  L   +GA+ +T  GLS
Sbjct: 180 VRGVELGGAVKNVIAIAAGLSDGLGFGSNARAGLITRGLAEMGRLGVALGARGSTFMGLS 239

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
           G GD++LTC  +LSRNR VG+RL  G+ LD I++ M  VAEGV T  AV  LAQ+  V +
Sbjct: 240 GLGDLVLTCTGDLSRNRQVGLRLAEGQGLDAIVAGMGMVAEGVKTTEAVYELAQREGVDL 299

Query: 429 PVLTAVARIIDNELTPKKAVLELMS 453
           P+  A+  ++ +   P+  V ELM+
Sbjct: 300 PITQAMYAVLHDGRDPRDMVQELMT 324

Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) (taxid: 882)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|B0SKD9|GPDA_LEPBP Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gpsA PE=3 SV=1

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/326 (41%), Positives = 198/326 (60%), Gaps = 3/326 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ ++G GSFGTA+ + +A+K   + ++   R     +SINE H N ++ P+  LP+ + 
Sbjct: 2   KIGIIGAGSFGTALGSILADKGYDVTLWT--RSEEQARSINENHMNSKHMPDLVLPDRLK 59

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           A+TD    +   D  + A P    S  L+ I D++ P +P +S SKG+E  +LR++S+I 
Sbjct: 60  ASTDLIQVVKDKDMIVSAPPSHALSGILKEIKDHIPPKVPIVSASKGIENESLRLVSEIF 119

Query: 249 PQALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              L       ++ LSGPSFA E++ ++PT + +ASK+   A  VQ++ +  + R   + 
Sbjct: 120 ESELPGQFHSQLSYLSGPSFAKEMVKRVPTIVSIASKNEATAKRVQEIFSFTYFRTYWTP 179

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           DV GVE+ GALKNV+AIAAG+  G+  G N+ AAL+ +G +EI  +  KMGA P T  G 
Sbjct: 180 DVVGVEVGGALKNVIAIAAGVADGLGFGQNTRAALITRGLNEITRMGIKMGADPMTFLGP 239

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
           SG GD++LTC    SRNRTVG RLG GE L +ILSSMN+VAEGV T  +   LA K  V+
Sbjct: 240 SGMGDLVLTCCGEASRNRTVGFRLGKGESLKEILSSMNEVAEGVKTTLSTKNLADKLGVE 299

Query: 428 MPVLTAVARIIDNELTPKKAVLELMS 453
           M +   V  ++  +  PK+ V  LMS
Sbjct: 300 MAITQEVYHMLYEDKDPKEVVRALMS 325

Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) (taxid: 456481)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2064849	420	GLY1 [Arabidopsis thaliana (ta	0.792	0.864	0.876	1.4e-165
TIGR_CMR|GSU_0006	335	GSU_0006 "glycerol-3-phosphate	0.709	0.970	0.396	1.7e-57
TIGR_CMR|CHY_1917	336	CHY_1917 "glycerol-3-phosphate	0.705	0.961	0.381	4.8e-55
UNIPROTKB|P95113	334	gpsA "Glycerol-3-phosphate deh	0.696	0.955	0.395	5.6e-52
TIGR_CMR|BA_1526	340	BA_1526 "glycerol-3-phosphate	0.703	0.947	0.366	8.3e-51
TIGR_CMR|DET_1397	359	DET_1397 "glycerol-3-phosphate	0.705	0.899	0.352	2.8e-50
UNIPROTKB|Q97NF1	338	gpsA "Glycerol-3-phosphate deh	0.703	0.952	0.36	3.2e-49
TIGR_CMR|ECH_0340	326	ECH_0340 "glycerol-3-phosphate	0.698	0.981	0.337	8.5e-49
UNIPROTKB|P0A6S7	339	gpsA [Escherichia coli K-12 (t	0.709	0.958	0.334	1.4e-46
TIGR_CMR|CBU_1518	332	CBU_1518 "glycerol-3-phosphate	0.694	0.957	0.337	1.2e-44

TAIR|locus:2064849 GLY1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1611 (572.2 bits), Expect = 1.4e-165, P = 1.4e-165
 Identities = 318/363 (87%), Positives = 343/363 (94%)

Query:    95 RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLK 154
             RD+RK+V++AWEKLVRWSR+ R+KAKTD+LERT KVVVLGGGSFGTAMAAHVA +K  L+
Sbjct:    55 RDQRKVVRIAWEKLVRWSRSLRAKAKTDVLERTRKVVVLGGGSFGTAMAAHVARRKEGLE 114

Query:   155 VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS 214
             V ML+RD  VCQSINE H NC+YFPE KLPENVIATTDAK ALL ADYCLHA+PVQFSSS
Sbjct:   115 VNMLVRDSFVCQSINENHHNCKYFPEHKLPENVIATTDAKAALLDADYCLHAVPVQFSSS 174

Query:   215 FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK 274
             FLEGI+DYVDPGLPFISLSKGLELNTLRMMSQIIP AL+NPRQPF+ALSGPSFALELMN 
Sbjct:   175 FLEGIADYVDPGLPFISLSKGLELNTLRMMSQIIPIALKNPRQPFVALSGPSFALELMNN 234

Query:   275 LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL 334
             LPTAMVVASKD+KLANAVQQLLAS +LRI+TSSDVTGVEIAGALKNVLAIAAGIV GMNL
Sbjct:   235 LPTAMVVASKDKKLANAVQQLLASSYLRINTSSDVTGVEIAGALKNVLAIAAGIVDGMNL 294

Query:   335 GNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 394
             GNNSMAALV+QGCSEIRWLATKMGAKP TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG
Sbjct:   295 GNNSMAALVSQGCSEIRWLATKMGAKPTTITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG 354

Query:   395 EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL 454
             E LDDIL+SMNQVAEGV+TAGAVIALAQKYNVK+PVLTAVA+IIDNELTP KAVLELM+L
Sbjct:   355 ETLDDILTSMNQVAEGVATAGAVIALAQKYNVKLPVLTAVAKIIDNELTPTKAVLELMNL 414

Query:   455 PQV 457
             PQ+
Sbjct:   415 PQI 417

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA;ISS

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0046486 "glycerolipid metabolic process" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0048653 "anther development" evidence=RCA

GO:0045017 "glycerolipid biosynthetic process" evidence=IMP

TIGR_CMR|GSU_0006 GSU_0006 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 130/328 (39%), Positives = 198/328 (60%)

Query:   127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPEN 186
             + ++ V+G GS+GT +A  +A K   L V +   +  + + +     N  + P  +L   
Sbjct:     2 SERIGVIGAGSWGTTLANLLARKG--LDVTLWAYEAELVEEMRATRVNSLFLPGIELAPA 59

Query:   187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ 246
             +  T   + A  G D+ +   P Q     L  ++  + PG+  ++ SKG+EL+TL  M Q
Sbjct:    60 LSFTNSLEEAATGKDFLVLVSPSQVMRGVLAQLAPLLRPGVVLVNASKGIELDTLMTMDQ 119

Query:   247 IIPQALR-NPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
             +    L     + F  LSGPSFA E+  ++PTA+V AS D  +A AVQ+L  +   R+ T
Sbjct:   120 VCAAVLPPEVARCFSVLSGPSFAREVSLEMPTAVVAASGDPAVAAAVQRLFTTPSFRVYT 179

Query:   306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT 365
             ++DV GVEI GALKNV+A+AAGI  G+ LG+N+ AAL+ +G +E+  L   MGA+P T  
Sbjct:   180 NTDVVGVEIGGALKNVIAVAAGISDGLGLGHNTRAALITRGLAEMTRLGLSMGAQPETFA 239

Query:   366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYN 425
             GL+G GD++LTC  +LSRNRTVG++LG G KL D+L  M  VAEGV TA +   LA++  
Sbjct:   240 GLAGMGDLVLTCTGDLSRNRTVGMKLGQGMKLADVLGEMRMVAEGVKTAESAYRLARRTG 299

Query:   426 VKMPVLTAVARIIDNELTPKKAVLELMS 453
             V+MP+   V +++  +   ++AV+ELM+
Sbjct:   300 VEMPITEKVYQVLHEDKPARQAVMELMT 327

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1917 CHY_1917 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 124/325 (38%), Positives = 192/325 (59%)

Query:   129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
             KV VLG GS+GTA++  +A K   +   +  RD AV + IN +  N RY P  K+ + +I
Sbjct:     5 KVTVLGAGSWGTALSNLLAQKG--VNTVLWGRDSAVIEEINRERENKRYLPGVKISQELI 62

Query:   189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
             AT D + AL  A++ + A+P Q     L+ I  Y  P    ++ +KG+E  +L  MS + 
Sbjct:    63 ATADLEFALKDANFLVAAVPSQAFRDLLQKIKPYFKPEQILVNTAKGIEEGSLLRMSAVF 122

Query:   249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
              + L   R  +  LSGPS A E+   +PTA+VV+    +    VQ+L ++++ R+ T+ D
Sbjct:   123 TEVLPEYRDNYTILSGPSHAEEVGRGIPTAIVVSGYSPEKLYKVQELFSTEYFRVYTNDD 182

Query:   309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
             +TGVE+ G+LKN++AIA+GI  G+ LG+N+ AALV +G  EI  L  K+GAK  T  GLS
Sbjct:   183 LTGVELGGSLKNIIAIASGICTGLGLGDNTRAALVTRGLIEITRLGIKLGAKKETFMGLS 242

Query:   369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
             G GD+ +T     SRN   G+ +G G+ L++    +N V EG+ T  A   LAQ+  V+M
Sbjct:   243 GLGDLFVTAGSRHSRNYKAGILIGEGKSLEETQKEINMVVEGIRTTRAAYQLAQRLEVEM 302

Query:   429 PVLTAVARIIDNELTPKKAVLELMS 453
             P+  A+ +++   L P++ +  LM+
Sbjct:   303 PITEALYKVLFAGLPPREGLFGLMT 327

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

UNIPROTKB|P95113 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 128/324 (39%), Positives = 190/324 (58%)

Query:   130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
             V V+G G++GTA+A  +A+   ++ ++   R   V   IN    N  Y P   LP ++ A
Sbjct:     8 VAVMGAGAWGTALAKVLADAGGEVTLWA--RRAEVADQINTTRYNPDYLPGALLPPSIHA 65

Query:   190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249
             T DA+ AL GA   L  +P Q   + LE  +  +  G   +SL+KG+EL TL  MSQ+I 
Sbjct:    66 TADAEEALGGASTVLLGVPAQTMRANLERWAPLLPEGATLVSLAKGIELGTLMRMSQVII 125

Query:   250 QALRNPRQPFIA-LSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
              ++     P +A +SGP+ A E+    P A VVA  D   A A+Q+ L S + R  T++D
Sbjct:   126 -SVTGAEPPQVAVISGPNLASEIAECQPAATVVACSDSGRAVALQRALNSGYFRPYTNAD 184

Query:   309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
             V G EI GA KN++A+A G+ VG+ LG N+ AA++ +G +EI  L T +GA  AT+ GL+
Sbjct:   185 VVGTEIGGACKNIIALACGMAVGIGLGENTAAAIITRGLAEIIRLGTALGANGATLAGLA 244

Query:   369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
             G GD++ TC    SRNR+ G RLG GE L     + + V EGV++  +V+ALA  Y+V+M
Sbjct:   245 GVGDLVATCTSPRSRNRSFGERLGRGETLQSAGKACH-VVEGVTSCESVLALASSYDVEM 303

Query:   429 PVLTAVARIIDNELTPKKAVLELM 452
             P+  AV R+    L+  +A+  L+
Sbjct:   304 PLTDAVHRVCHKGLSVDEAITLLL 327

GO:0005886 "plasma membrane" evidence=IDA

TIGR_CMR|BA_1526 BA_1526 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 119/325 (36%), Positives = 184/325 (56%)

Query:   129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
             K+ V+G GS+GTA+A  +A+    ++++    +  +   IN KH N RY P   LP  ++
Sbjct:     3 KITVVGAGSWGTALAMVLADNGHDVRIWGNRSE--LMDEINTKHENSRYLPGITLPSTIV 60

Query:   189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
             A +  + AL+  +  L  +P +     L+ +  YV     +I  SKG+E  T + +S++I
Sbjct:    61 AYSSLEEALVDVNVVLIVVPTKAYREVLQDMKKYVAGPTTWIHASKGIEPGTSKRISEVI 120

Query:   249 PQALRNPR-QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
              + +     +  + LSGPS A E+  +  T +  A+K  + A  VQ L  + + R+ T+ 
Sbjct:   121 EEEIPEDLIKDVVVLSGPSHAEEVGLRQATTVTSAAKRMEAAEEVQDLFMNSYFRVYTNP 180

Query:   308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
             D+ GVE+ GALKN++A+AAGI  G+ LG+N+ AAL+ +G +EI  L  KMG  P T  GL
Sbjct:   181 DIVGVELGGALKNIIALAAGITDGLGLGDNAKAALMTRGLTEIARLGRKMGGNPLTFAGL 240

Query:   368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
             +G GD+++TC    SRN   G  LG G  L+++L SM  V EGV T  A   LA+K  V+
Sbjct:   241 TGMGDLIVTCTSVHSRNWRAGNMLGKGHSLEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300

Query:   428 MPVLTAVARIIDNELTPKKAVLELM 452
             MP+  A+  ++ N    K AV  LM
Sbjct:   301 MPITAALYDVLFNGNNVKDAVGSLM 325

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

TIGR_CMR|DET_1397 DET_1397 "glycerol-3-phosphate dehydrogenase, NAD-dependent" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 116/329 (35%), Positives = 186/329 (56%)

Query:   128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPEN 186
             +KV ++G  ++G  +   +A+K  ++ ++    D A   S   +  +  + PE    PE 
Sbjct:     2 SKVCIIGTTTWGITLGTVIAHKGREVMLWARTEDEAALLSAQRRPAD--FLPEDYYFPEY 59

Query:   187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ 246
             +  T   + AL GAD  L A+P Q     +   +  +   +   S SKGLE+ T + MSQ
Sbjct:    60 LNVTASLEEALSGADMVLMAVPSQRMRPNIRLAAPLLTKNMLVCSASKGLEIGTAKRMSQ 119

Query:   247 IIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
             +I   + +P   Q    LSGP+ A+E++  LP   V+A+   K A    +L+ + +    
Sbjct:   120 VIADEI-SPDFSQNICVLSGPNLAMEILKGLPAVTVLAADTEKTAKKAAKLVTASNFCAY 178

Query:   305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
             T++D+ GVE+ G+LKN++A+ AGI  G++ GNN+ +AL+ +G +EI  L   +GA P T 
Sbjct:   179 TNTDIIGVELGGSLKNIIALGAGIADGLSFGNNAKSALITRGLTEISALGAALGANPLTF 238

Query:   365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKY 424
             +GL+G GD++ TC  NLSRN  VGV L  G  L+DI+ SM+ VAEGVST      LA+  
Sbjct:   239 SGLAGLGDLIATCSSNLSRNHFVGVELTKGRSLNDIMYSMSNVAEGVSTTAVAYELARSM 298

Query:   425 NVKMPVLTAVARIIDNELTPKKAVLELMS 453
             +++MPV   +  ++ N   PK+A  +LM+
Sbjct:   299 DLEMPVTENIYNVLYNNADPKEAARKLMA 327

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISS

UNIPROTKB|Q97NF1 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 117/325 (36%), Positives = 189/325 (58%)

Query:   130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
             V VLG GS+GTA++  + +   +++++  +  P     IN  H N  YF +  L EN+IA
Sbjct:     6 VAVLGPGSWGTALSQVLNDNGHEVRIWGNL--PEQINEINTHHTNKHYFKDVVLDENIIA 63

Query:   190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249
              TD    L   D  L  +P + +    + ++  +D  +  +  SKGLE ++ + +S I+ 
Sbjct:    64 YTDLAETLKDVDAILFVVPTKVTRLVAQQVAQTLDHKVIIMHASKGLEPDSHKRLSTILE 123

Query:   250 QAL-RNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
             + +  + R   + +SGPS A E + +  T +  ASKD + A  VQ+L ++ + R+ T++D
Sbjct:   124 EEIPEHLRSDIVVVSGPSHAEETIVRDLTLITAASKDLQTAQYVQKLFSNHYFRLYTNTD 183

Query:   309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
             V GVE AGALKN++A+ AG + G+  G+N+ AA++A+G +EI  L   +GA P T +GLS
Sbjct:   184 VIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIIARGLAEITRLGVALGASPLTYSGLS 243

Query:   369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
             G GD+++T     SRN   G  LG GE L DI ++M  V EG+ST  A   LAQ+  V M
Sbjct:   244 GVGDLIVTGTSIHSRNWRAGDALGRGESLADIEANMGMVIEGISTTRAAYELAQELGVYM 303

Query:   429 PVLTAVARIIDNELTPKKAVLELMS 453
             P+  A+ ++I +    K A+ ++M+
Sbjct:   304 PITQAIYQVIYHGTNIKDAIYDIMN 328

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|ECH_0340 ECH_0340 "glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 111/329 (33%), Positives = 192/329 (58%)

Query:   129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
             K  +LG GSFGTA+A  +++  + + ++   R+    QSI     N +Y P  KLPEN+I
Sbjct:     2 KTTILGAGSFGTAIAFALSSNSTSVNLWG--RNHTDMQSIAINRKNLKYLPTCKLPENII 59

Query:   189 ATTDAKTALLGADYCLH-AMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTLRMMS 245
              +++    L     C+  A+P Q   +    I D  ++    P +  SKG+E  +L+  S
Sbjct:    60 VSSNIDEVLSDYSTCIILAVPTQQLRTLCLSIQDKQHIFEKTPLLICSKGIENISLKFPS 119

Query:   246 QIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
             +I+ + L  P  P   LSGPSFA E+   LP  +V+A ++  L  ++ Q +++K  +I  
Sbjct:   120 EIVKEIL--PNNPAFILSGPSFAKEIAEDLPCTIVLAGENESLGTSIAQKISNKTFKIIY 177

Query:   306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL--ATKMGAKPAT 363
             S D+ GV+I  ALKN++AIA GIV G NLGNN++A ++ +G  EI+ L  A       +T
Sbjct:   178 SQDILGVQIGAALKNIIAIACGIVTGKNLGNNAIATVITKGMEEIKTLYAAKNQNINLST 237

Query:   364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423
             + G S  GD++LTC    SRN + G+ +G G  ++ +L++ +++ EGVST   +I+LA++
Sbjct:   238 LIGPSCLGDLILTCTTAHSRNMSFGITIGQGADINKMLNNNSKIIEGVSTVKPLISLAKE 297

Query:   424 YNVKMPVLTAVARIIDNELTPKKAVLELM 452
              N+++P+ T++  ++   +  +K + +++
Sbjct:   298 LNIELPICTSIYNLLYKNIPLEKTISDIL 326

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

GO:0047952 "glycerol-3-phosphate dehydrogenase [NAD(P)+

UNIPROTKB|P0A6S7 gpsA [Escherichia coli K-12 (taxid:83333)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 110/329 (33%), Positives = 176/329 (53%)

Query:   125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
             +R   + V+G GS+GTA+A  +A    +  V +   DP    ++    CN  + P+   P
Sbjct:     3 QRNASMTVIGAGSYGTALAITLARNGHE--VVLWGHDPEHIATLERDRCNAAFLPDVPFP 60

Query:   185 ENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
             + +   +D  TAL  +   L  +P       L  I   + P    +  +KGLE  T R++
Sbjct:    61 DTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPDARLVWATKGLEAETGRLL 120

Query:   245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLL-ASKHLRI 303
               +  +AL + + P   +SGP+FA EL   LPTA+ +AS D+  A+ +QQLL   K  R+
Sbjct:   121 QDVAREALGD-QIPLAVISGPTFAKELAAGLPTAISLASTDQTFADDLQQLLHCGKSFRV 179

Query:   304 STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT 363
              ++ D  GV++ GA+KNV+AI AG+  G+  G N+  AL+ +G +E+  L   +GA PAT
Sbjct:   180 YSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLAEMSRLGAALGADPAT 239

Query:   364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK 423
               G++G GD++LTC  N SRNR  G+ LG G  +      + QV EG      V  LA +
Sbjct:   240 FMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVVEGYRNTKEVRELAHR 299

Query:   424 YNVKMPVLTAVARIIDNELTPKKAVLELM 452
             + V+MP+   + +++      ++A L L+
Sbjct:   300 FGVEMPITEEIYQVLYCGKNAREAALTLL 328

GO:0046474 "glycerophospholipid biosynthetic process" evidence=IMP

GO:0047952 "glycerol-3-phosphate dehydrogenase [NAD(P)+

GO:0051287 "NAD binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|CBU_1518 CBU_1518 "glycerol-3-phosphate dehydrogenase (NAD+)" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 109/323 (33%), Positives = 178/323 (55%)

Query:   130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
             + +LG GS+GTA+A  +A K  +++++    D      +  +  N RY P    PE + A
Sbjct:     8 IAILGAGSWGTALALVLARKGQKVRLWSYESDHV--DEMQAEGVNNRYLPNYPFPETLKA 65

Query:   190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP 249
               D K +L G    L  +P       +  +   +D        +KGL   + R++ +++ 
Sbjct:    66 YCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVA 124

Query:   250 QALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDV 309
               L   + P   +SGPS A E+   LPTA+ +AS + + +  + + L  +  R+  + D+
Sbjct:   125 TELG--QVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDM 182

Query:   310 TGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSG 369
              GVE+ G++KN+LAIA GI  G+ LG+N+ AAL+ +G +E+  L +  G K  T+TGL+G
Sbjct:   183 IGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLAG 242

Query:   370 TGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMP 429
              GD++LTC  N SRNR  G+ LG G    +   ++ Q  EG+     V ALAQK+ ++MP
Sbjct:   243 LGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMP 302

Query:   430 VLTAVARIIDNELTPKKAVLELM 452
             +   V RI+  +L P++AV EL+
Sbjct:   303 LTFQVHRILHEDLDPQQAVQELL 325

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H2J9	GPDA_ORYSJ	1, ., 1, ., 1, ., 8	0.8044	0.7925	0.825	yes	no
Q949Q0	GPDA2_ARATH	1, ., 1, ., 1, ., 8	0.8451	0.8275	0.9023	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766
4th Layer	1.1.1.94	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
PRK00094	325	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp	1e-141
COG0240	329	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase	1e-129
PRK12439	341	PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-p	4e-84
PRK14618	328	PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-p	8e-65
PRK14620	326	PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-p	2e-63
PRK14619	308	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-p	6e-63
TIGR03376	342	TIGR03376, glycerol3P_DH, glycerol-3-phosphate deh	5e-56
pfam07479	145	pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-	1e-54
pfam01210	157	pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-	8e-45
PTZ00345	365	PTZ00345, PTZ00345, glycerol-3-phosphate dehydroge	3e-32

>gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

 Score =  406 bits (1047), Expect = e-141
 Identities = 144/325 (44%), Positives = 201/325 (61%), Gaps = 3/325 (0%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLG GS+GTA+A  +A       V +  RDP     IN    N RY P  KLP+N+ 
Sbjct: 3   KIAVLGAGSWGTALAIVLARNGHD--VTLWARDPEQAAEINADRENPRYLPGIKLPDNLR 60

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           ATTD   AL  AD  L A+P Q     L+ +   + P  P +  +KG+E  T +++S+++
Sbjct: 61  ATTDLAEALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVL 120

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L +   P   LSGPSFA E+   LPTA+V+AS D +LA  VQ+L  S + R+ T++D
Sbjct: 121 EEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTD 179

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVE+ GALKNV+AIAAGI  G+ LG+N+ AAL+ +G +EI  L   +GA P T  GL+
Sbjct: 180 VIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLA 239

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
           G GD++LTC   LSRNR  G+ LG G+ L++ L+ +  VAEGV TA AV  LA+K  V+M
Sbjct: 240 GLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYELAKKLGVEM 299

Query: 429 PVLTAVARIIDNELTPKKAVLELMS 453
           P+  AV  ++     P++AV +LM 
Sbjct: 300 PITEAVYAVLYEGKDPREAVEDLMG 324

Length = 325

>gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score =  375 bits (966), Expect = e-129
 Identities = 151/327 (46%), Positives = 201/327 (61%), Gaps = 4/327 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ V+G GS+GTA+A  +A    +  V +  RD  +   INE   N +Y P   LP N+ 
Sbjct: 3   KIAVIGAGSWGTALAKVLARNGHE--VRLWGRDEEIVAEINETRENPKYLPGILLPPNLK 60

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           ATTD   AL GAD  + A+P Q     L  +   +      +S +KGLE  T R++S+II
Sbjct: 61  ATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEII 120

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L  P  P   LSGPSFA E+   LPTA+VVAS D++ A  VQ L +S + R+ TS+D
Sbjct: 121 EEEL--PDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTD 178

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVEI GALKNV+AIAAGI  G+ LG+N+ AAL+ +G +E+  L   +GAKP T  GLS
Sbjct: 179 VIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLS 238

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
           G GD++LTC   LSRNR  G+ LG G  LD+ L  + QV EGV TA AV  LA+K  ++M
Sbjct: 239 GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEM 298

Query: 429 PVLTAVARIIDNELTPKKAVLELMSLP 455
           P+  AV R++   L PK+A+ ELM   
Sbjct: 299 PITEAVYRVLYEGLDPKEAIEELMGRD 325

Length = 329

>gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score =  261 bits (669), Expect = 4e-84
 Identities = 127/330 (38%), Positives = 185/330 (56%), Gaps = 6/330 (1%)

Query: 124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQK 182
            +R  KVVVLGGGS+GT +A+  A +   L     +R       IN+ H N RY   +  
Sbjct: 4   AKREPKVVVLGGGSWGTTVASICARRGPTL---QWVRSAETADDINDNHRNSRYLGNDVV 60

Query: 183 LPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLR 242
           L + + ATTD   A   AD  +  +P       L  ++  + P +P +SL KGLE  T  
Sbjct: 61  LSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNM 120

Query: 243 MMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLR 302
            MSQII + L  P  P   L+GP+ A E+      A V+A  D+ LA  +  L  ++  R
Sbjct: 121 RMSQIIEEVL--PGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFR 178

Query: 303 ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA 362
           + T+ DV GVE+AGALKNV AIA G+   + +G N+ A ++A+   E+  L   MG  P 
Sbjct: 179 VYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPE 238

Query: 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQ 422
           T  GL+G GD+++TC    SRNR VG +LG+G+ +D+I++SMNQVAEGV  A  V+  A 
Sbjct: 239 TFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFAD 298

Query: 423 KYNVKMPVLTAVARIIDNELTPKKAVLELM 452
           +Y + MP+   V  +I++  T ++A   L+
Sbjct: 299 EYGLNMPIAREVDAVINHGSTVEQAYRGLI 328

Length = 341

>gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score =  211 bits (538), Expect = 8e-65
 Identities = 113/329 (34%), Positives = 172/329 (52%), Gaps = 12/329 (3%)

Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPEN 186
             +V VLG G++GTA+A   A+K   + V +  R P    ++  +  N  Y P   LP  
Sbjct: 4   GMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAE 61

Query: 187 VIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMM 244
           +  T D + AL GAD+ + A+P +     L G+       L ++S +KGL  +   L  +
Sbjct: 62  LYPTADPEEALAGADFAVVAVPSKALRETLAGLP----RALGYVSCAKGLAPDGGRLSEL 117

Query: 245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
           ++++       +     LSGP+ A E+   LP A VVAS +  LA  VQ   +    R+ 
Sbjct: 118 ARVLEFL---TQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVY 174

Query: 305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
           TS D  GVE+ GALKNV+A+AAG+V G+ LG+N+ AAL+ +G  E+      +GA+ AT 
Sbjct: 175 TSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATF 234

Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKY 424
            GLSG GD++ T     SRNR  G  +  G   +  L +  +V EG+ T  A+ A A+ +
Sbjct: 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREH-LEAGGKVVEGLYTVKALDAWAKAH 293

Query: 425 NVKMPVLTAVARIIDNELTPKKAVLELMS 453
              +P++ AVAR+      P   +  LM 
Sbjct: 294 GHDLPIVEAVARVARGGWDPLAGLRSLMG 322

Length = 328

>gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score =  207 bits (529), Expect = 2e-63
 Identities = 115/329 (34%), Positives = 195/329 (59%), Gaps = 8/329 (2%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ +LG GSFGTA+A  +++KK    V +  R+    +SIN K  N +Y P   LP+N+ 
Sbjct: 2   KISILGAGSFGTAIAIALSSKKIS--VNLWGRNHTTFESINTKRKNLKYLPTCHLPDNIS 59

Query: 189 ATTDAKTALLGADYC-LHAMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQ 246
             +     L     C + A+P Q   +  + + D ++    P +  SKG+E ++L+  S+
Sbjct: 60  VKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSE 119

Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
           I+ + L  P  P   LSGPSFA E+  KLP ++V+A ++  L +++   L++++L+I  S
Sbjct: 120 IVNEIL--PNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYS 177

Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR--WLATKMGAKPATI 364
            D+ GV+I  ALKN++AIA GIV+G NLGNN+ AA++ +G +EI+  + A        T+
Sbjct: 178 QDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTL 237

Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKY 424
            G S  GD++LTC    SRN + G ++G+G  ++ ILS    V EG ST   +I+LA+K 
Sbjct: 238 IGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKL 297

Query: 425 NVKMPVLTAVARIIDNELTPKKAVLELMS 453
           N+++P+  ++  ++   ++ +K +  ++S
Sbjct: 298 NIELPICESIYNLLYENISLEKTISVILS 326

Length = 326

>gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score =  205 bits (525), Expect = 6e-63
 Identities = 98/228 (42%), Positives = 141/228 (61%), Gaps = 2/228 (0%)

Query: 225 PGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK 284
           P    ++ +KGL+  T R  SQI   A   P  P + LSGP+ + E+   LP A VVAS+
Sbjct: 74  PETIIVTATKGLDPETTRTPSQIWQAAF--PNHPVVVLSGPNLSKEIQQGLPAATVVASR 131

Query: 285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA 344
           D   A  VQQ+ +S+  R+ T+SD  G E+ G LKNV+AIAAG+  G+ LG N+ AALV 
Sbjct: 132 DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVT 191

Query: 345 QGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM 404
           +   E+  + T +GA+  T  GLSG GD++ TC   LSRN  VG  L  G+ L+ IL+ +
Sbjct: 192 RALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAEL 251

Query: 405 NQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELM 452
              AEGV+TA  ++ LAQ+ N+ +P+   V R++  E+TP++A+ ELM
Sbjct: 252 EGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQGEITPQQALEELM 299

Length = 308

>gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase (NAD(+))

 Score =  189 bits (481), Expect = 5e-56
 Identities = 108/342 (31%), Positives = 165/342 (48%), Gaps = 29/342 (8%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQL------KVYMLMRDPAVCQS-----INEKHCNCRY 177
           +V V+G G++GTA+A  VA     L       V M + +  +        IN  H N +Y
Sbjct: 1   RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKY 60

Query: 178 FPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237
            P  KLP N++A  D   A  GAD  +  +P QF     + +  +V P    IS  KGLE
Sbjct: 61  LPGIKLPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120

Query: 238 LNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD----RKLANA 291
           ++   ++++S II + L     P   LSG + A E+  +  +   V  +D       A  
Sbjct: 121 VSKDGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARV 177

Query: 292 VQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR 351
           ++ L    + R++   DV GVEIAGALKNV+AIAAG V G+  G+N+ AA++ +G  E+ 
Sbjct: 178 LKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI 237

Query: 352 WLATKMG--AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQ 406
             A       +        G  D++ TC     RN  VG     +G+ L+++   +   Q
Sbjct: 238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQ 295

Query: 407 VAEGVSTAGAVIALAQKYNV--KMPVLTAVARIIDNELTPKK 446
             +GV+TA  V  L +  N   + P+  AV +I+   L PKK
Sbjct: 296 SLQGVATAKEVHELLKNKNKDDEFPLFEAVYQILYEGLPPKK 337

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Length = 342

>gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

 Score =  178 bits (454), Expect = 1e-54
 Identities = 68/145 (46%), Positives = 92/145 (63%)

Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366
            DV GVEI GALKNV+AIAAGI+ G+  G+N+ AAL+ +G  E+      +G  P T  G
Sbjct: 1   EDVVGVEIGGALKNVIAIAAGILDGLGFGDNTKAALITRGLMEMIKFGAALGGGPETFFG 60

Query: 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426
           L+G GD++ TC   L RNR VG  LG G+ L++I   + QVAEGV TA  V  LA++  +
Sbjct: 61  LAGLGDLITTCTSELGRNRRVGEALGKGKSLEEIEKELGQVAEGVKTAKEVYELAKRKGL 120

Query: 427 KMPVLTAVARIIDNELTPKKAVLEL 451
             P+ TAV RI+   L P++A+  L
Sbjct: 121 DFPLFTAVYRILYEGLKPEEAIEYL 145

NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain. Length = 145

>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

 Score =  153 bits (388), Expect = 8e-45
 Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 4/161 (2%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLG GS+GTA+A  +A    +  V +  RD  + + IN    N +Y P  KLP+N+ 
Sbjct: 1   KIAVLGAGSWGTALAKVLARNGHE--VRLWGRDEELIEEINTTRENVKYLPGIKLPDNLR 58

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           ATTD + A+ GAD  + A+P Q     L+ +   + PG   +SL+KG+E  TL+++S+II
Sbjct: 59  ATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEII 118

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLA 289
            + L  P  P   LSGPS A E+   LPTA VVAS+D++ A
Sbjct: 119 EEEL--PINPIAVLSGPSHAEEVALGLPTATVVASEDQQAA 157

NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157

>gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase; Provisional

 Score =  125 bits (317), Expect = 3e-32
 Identities = 89/332 (26%), Positives = 157/332 (47%), Gaps = 28/332 (8%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVY-----MLMRDPAV-----CQSINEKHCNCRYF 178
           KV V+G G++G+A++  V     +  ++     M + +  V        IN KH N +Y 
Sbjct: 13  KVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYL 72

Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGI--SDYVDPGLPFISLSKGL 236
           P  KLP+N++A +D K A+  AD  +  +P QF  S L  I  ++ +      ISL+KG+
Sbjct: 73  PGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGI 132

Query: 237 ELNTLRMM--SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
            +   + +  S +I + L     P  ALSG + A ++  +  +   +  +D+  A   Q+
Sbjct: 133 IVENGKPVLCSDVIEEELG---IPCCALSGANVANDVAREEFSEATIGCEDKDDALIWQR 189

Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
           L    + +I+   DV GVE+ GALKN++A+AAG   G+ LG N+ +A++  G  E++   
Sbjct: 190 LFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFG 249

Query: 355 TKMGAKPATITGL--SGTGDIMLTCFVNLSRNRTVG---VRLGSGEKLDDILSSM--NQV 407
                     T     G  D++ TC     RN        +    +  ++I + +   Q 
Sbjct: 250 KIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQK 307

Query: 408 AEGVSTAGAVIALAQKYNVK--MPVLTAVARI 437
            +G  T   V  + + +++K   P+ T   +I
Sbjct: 308 LQGTVTLKEVYEVLESHDLKKEFPLFTVTYKI 339

Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	100.0
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	100.0
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	100.0
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	100.0
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	100.0
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.97
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.96
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.96
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.96
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.96
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.95
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.95
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.95
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.94
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.94
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.93
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	99.93
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.93
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.92
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.92
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.91
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.91
PF07479	149	NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate	99.9
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.9
PLN02858	1378	fructose-bisphosphate aldolase	99.9
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.89
PLN02858	1378	fructose-bisphosphate aldolase	99.88
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.85
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.85
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.84
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.83
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.83
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.82
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.8
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.8
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.79
PLN02688	266	pyrroline-5-carboxylate reductase	99.76
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.73
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.7
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.68
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.68
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.68
PRK07680	273	late competence protein ComER; Validated	99.65
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.64
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.63
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.6
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.6
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.59
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.57
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.56
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.54
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.54
PRK08507	275	prephenate dehydrogenase; Validated	99.52
PRK07417	279	arogenate dehydrogenase; Reviewed	99.52
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.51
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.49
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.49
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.46
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.45
PRK08655	437	prephenate dehydrogenase; Provisional	99.45
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	99.45
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.43
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.43
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.41
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.4
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.39
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.39
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.38
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.37
PLN02256	304	arogenate dehydrogenase	99.37
PRK06545	359	prephenate dehydrogenase; Validated	99.36
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.35
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.34
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.34
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.34
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.34
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.3
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.29
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.28
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.27
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.2
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.2
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.19
PLN02712	667	arogenate dehydrogenase	99.15
PLN02712	667	arogenate dehydrogenase	99.11
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	99.06
PRK08818	370	prephenate dehydrogenase; Provisional	99.03
PRK12480	330	D-lactate dehydrogenase; Provisional	99.03
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.98
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	98.98
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.98
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.95
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.95
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.94
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.93
PLN03139	386	formate dehydrogenase; Provisional	98.93
PF08546	125	ApbA_C: Ketopantoate reductase PanE/ApbA C termina	98.92
PRK07574	385	formate dehydrogenase; Provisional	98.92
PRK13243	333	glyoxylate reductase; Reviewed	98.91
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	98.9
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.9
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.89
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.89
PRK08605	332	D-lactate dehydrogenase; Validated	98.84
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.84
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.83
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.82
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.77
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.74
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.73
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.73
PRK06436	303	glycerate dehydrogenase; Provisional	98.72
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.69
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.67
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.62
PLN02306	386	hydroxypyruvate reductase	98.6
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.59
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	98.58
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.57
PLN02928	347	oxidoreductase family protein	98.55
PRK06444	197	prephenate dehydrogenase; Provisional	98.55
PRK06932	314	glycerate dehydrogenase; Provisional	98.52
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.52
PRK06487	317	glycerate dehydrogenase; Provisional	98.5
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.47
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.46
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.42
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.4
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.4
PRK06223	307	malate dehydrogenase; Reviewed	98.39
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.36
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.34
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.31
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.3
PRK06141	314	ornithine cyclodeaminase; Validated	98.22
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
PF14833	122	NAD_binding_11: NAD-binding of NADP-dependent 3-hy	98.2
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.19
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.17
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.17
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.16
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.15
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.15
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.14
PTZ00117	319	malate dehydrogenase; Provisional	98.12
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.11
PRK05225	487	ketol-acid reductoisomerase; Validated	98.03
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.02
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.02
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.99
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.94
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.94
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.91
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.91
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.9
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	97.88
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.86
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.85
PRK15076	431	alpha-galactosidase; Provisional	97.85
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.84
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.84
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.83
PLN00203	519	glutamyl-tRNA reductase	97.81
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.81
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.79
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.77
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.76
PRK08618	325	ornithine cyclodeaminase; Validated	97.75
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.75
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.74
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.73
PRK07340	304	ornithine cyclodeaminase; Validated	97.73
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.71
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.7
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.7
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.69
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.67
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.67
PRK06823	315	ornithine cyclodeaminase; Validated	97.67
PRK06407	301	ornithine cyclodeaminase; Provisional	97.65
PRK07589	346	ornithine cyclodeaminase; Validated	97.65
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.65
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.63
PLN02494	477	adenosylhomocysteinase	97.62
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.62
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.61
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.6
PLN02602	350	lactate dehydrogenase	97.59
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.57
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.57
PRK05442	326	malate dehydrogenase; Provisional	97.57
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.57
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.56
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.55
PRK09496	453	trkA potassium transporter peripheral membrane com	97.54
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.54
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.53
PRK08291	330	ectoine utilization protein EutC; Validated	97.52
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.52
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.5
PRK06046	326	alanine dehydrogenase; Validated	97.5
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.49
PRK04148	134	hypothetical protein; Provisional	97.44
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.43
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.42
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.42
PTZ00325	321	malate dehydrogenase; Provisional	97.41
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.4
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.4
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.37
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.36
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.35
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.35
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.33
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.3
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.3
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.26
PRK11579	346	putative oxidoreductase; Provisional	97.26
PRK06199	379	ornithine cyclodeaminase; Validated	97.25
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.22
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.21
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.17
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.17
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.16
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.15
PRK05086	312	malate dehydrogenase; Provisional	97.09
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.09
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.09
PLN00106	323	malate dehydrogenase	97.05
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.04
COG2910	211	Putative NADH-flavin reductase [General function p	97.03
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.03
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	97.01
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.01
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	97.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	96.99
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.99
PRK09496	453	trkA potassium transporter peripheral membrane com	96.98
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.98
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.97
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.95
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.93
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.92
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.9
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.88
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.87
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.86
PRK10669	558	putative cation:proton antiport protein; Provision	96.83
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.81
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.79
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.79
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.73
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.69
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.67
PRK06349	426	homoserine dehydrogenase; Provisional	96.64
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.63
PRK14982	340	acyl-ACP reductase; Provisional	96.61
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.6
CHL00194	317	ycf39 Ycf39; Provisional	96.56
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.55
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.53
PRK08328	231	hypothetical protein; Provisional	96.51
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.49
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	96.48
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.47
PRK06270	341	homoserine dehydrogenase; Provisional	96.43
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.43
PLN02383	344	aspartate semialdehyde dehydrogenase	96.38
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.37
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.35
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.34
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.34
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.31
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.24
PRK10206	344	putative oxidoreductase; Provisional	96.23
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.23
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.22
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.16
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	96.15
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	96.14
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.13
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.12
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.12
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.11
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.11
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.09
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.07
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.06
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.03
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.02
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.96
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.96
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.95
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.95
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.93
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.92
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.92
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.92
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	95.92
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.85
COG2344	211	AT-rich DNA-binding protein [General function pred	95.82
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.78
KOG1495	332	consensus Lactate dehydrogenase [Energy production	95.78
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	95.78
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.71
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.7
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.69
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.68
PRK08223	287	hypothetical protein; Validated	95.68
PRK06153	393	hypothetical protein; Provisional	95.67
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.65
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.63
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	95.58
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.57
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.54
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.49
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.47
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	95.46
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.45
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	95.41
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.4
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.39
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.39
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.38
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.36
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.36
PRK06392	326	homoserine dehydrogenase; Provisional	95.36
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	95.33
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.32
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.31
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.3
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.24
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.23
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.23
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.19
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.17
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.13
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.13
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.13
PRK08163	396	salicylate hydroxylase; Provisional	95.12
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.1
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	95.07
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.06
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	95.06
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.04
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.04
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.03
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	95.02
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.99
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.98
PRK06847	375	hypothetical protein; Provisional	94.94
COG5495	289	Uncharacterized conserved protein [Function unknow	94.84
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	94.81
PRK06180	277	short chain dehydrogenase; Provisional	94.8
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.77
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	94.77
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.76
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	94.75
PLN02427	386	UDP-apiose/xylose synthase	94.74
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.72
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	94.69
PRK07454	241	short chain dehydrogenase; Provisional	94.67
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	94.66
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.65
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.64
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.63
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.63
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.58
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.58
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	94.55
PRK05866	293	short chain dehydrogenase; Provisional	94.54
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	94.53
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.51
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.5
PRK10538	248	malonic semialdehyde reductase; Provisional	94.49
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.47
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.47
PRK07326	237	short chain dehydrogenase; Provisional	94.44
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.44
PRK06567	1028	putative bifunctional glutamate synthase subunit b	94.43
PLN03209	576	translocon at the inner envelope of chloroplast su	94.42
PF00984	96	UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas	94.37
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.36
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	94.35
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.34
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	94.33
PRK08340	259	glucose-1-dehydrogenase; Provisional	94.3
PRK07236	386	hypothetical protein; Provisional	94.3
PRK06753	373	hypothetical protein; Provisional	94.3
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.29
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.27
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.27
PRK09186	256	flagellin modification protein A; Provisional	94.26
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	94.26
PRK07877	722	hypothetical protein; Provisional	94.25
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.19
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	94.19
PRK08374	336	homoserine dehydrogenase; Provisional	94.18
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	94.17
PLN03075	296	nicotianamine synthase; Provisional	94.17
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.16
PRK05868	372	hypothetical protein; Validated	94.16
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.15
PRK07411	390	hypothetical protein; Validated	94.12
PRK06182	273	short chain dehydrogenase; Validated	94.12
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.08
PRK05993	277	short chain dehydrogenase; Provisional	94.08
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	94.02
PLN02214	342	cinnamoyl-CoA reductase	93.97
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.96
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	93.95
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.93
PRK12939	250	short chain dehydrogenase; Provisional	93.92
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.86
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.77
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	93.74
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.74
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.72
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.68
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.67
PRK07774	250	short chain dehydrogenase; Provisional	93.64
PLN02780	320	ketoreductase/ oxidoreductase	93.62
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	93.59
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.59
PRK07588	391	hypothetical protein; Provisional	93.56
PRK09242	257	tropinone reductase; Provisional	93.54
PRK06139	330	short chain dehydrogenase; Provisional	93.53
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.47
PRK07538	413	hypothetical protein; Provisional	93.47
PRK11728	393	hydroxyglutarate oxidase; Provisional	93.45
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	93.43
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.42
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.41
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	93.4
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	93.39
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.39
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.37
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.37
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.36
PRK08017	256	oxidoreductase; Provisional	93.34
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	93.32
PRK05875	276	short chain dehydrogenase; Provisional	93.28
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.28
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.28
PRK10637	457	cysG siroheme synthase; Provisional	93.27
PRK07109	334	short chain dehydrogenase; Provisional	93.24
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	93.21
PRK07890	258	short chain dehydrogenase; Provisional	93.19
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	93.18
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	93.18
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.18
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.16
PRK07024	257	short chain dehydrogenase; Provisional	93.15
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	93.14
PTZ00188	506	adrenodoxin reductase; Provisional	93.14
COG1832	140	Predicted CoA-binding protein [General function pr	93.12
PRK05854	313	short chain dehydrogenase; Provisional	93.09
PRK05693	274	short chain dehydrogenase; Provisional	93.06
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.04
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.02
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	93.0
PRK07208	479	hypothetical protein; Provisional	93.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	92.98
PRK07523	255	gluconate 5-dehydrogenase; Provisional	92.98
PRK08013	400	oxidoreductase; Provisional	92.97
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.94
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.94
PRK05867	253	short chain dehydrogenase; Provisional	92.93
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.93
PRK08251	248	short chain dehydrogenase; Provisional	92.92
PRK07814	263	short chain dehydrogenase; Provisional	92.91
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	92.9
PRK07478	254	short chain dehydrogenase; Provisional	92.88
PLN02650	351	dihydroflavonol-4-reductase	92.87
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	92.87
PRK05884	223	short chain dehydrogenase; Provisional	92.86
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.83
PRK06949	258	short chain dehydrogenase; Provisional	92.82
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	92.82
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.82
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	92.82
PRK06194	287	hypothetical protein; Provisional	92.76
PRK08643	256	acetoin reductase; Validated	92.76
PRK07045	388	putative monooxygenase; Reviewed	92.75
PRK07102	243	short chain dehydrogenase; Provisional	92.68
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.68
PRK06172	253	short chain dehydrogenase; Provisional	92.65
PRK07825	273	short chain dehydrogenase; Provisional	92.64
PRK06197	306	short chain dehydrogenase; Provisional	92.62
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	92.59
PRK08267	260	short chain dehydrogenase; Provisional	92.59
PRK07806	248	short chain dehydrogenase; Provisional	92.52
PRK07831	262	short chain dehydrogenase; Provisional	92.51

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=3.3e-58  Score=452.41  Aligned_cols=325  Identities=46%  Similarity=0.660  Sum_probs=315.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|+||+++|..|+++|  |+|++|.|+++.+++|+..+.|.+|+|+..+|+++.+++|++++++++|+|+++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng--~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a   78 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNG--HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA   78 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcC--CeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence            479999999999999999999999  999999999999999999988999999999999999999999999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~  286 (458)
                      ||++.+++++.++.++++++.++|+++||+.+++.+.+++++++.++..  .+++++||+++.|+++|.++.+++++.|.
T Consensus        79 vPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~--~~~vLSGPs~A~EVa~g~pta~~vas~d~  156 (329)
T COG0240          79 VPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDN--PIAVLSGPSFAKEVAQGLPTAVVVASNDQ  156 (329)
T ss_pred             CChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCC--eEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence            9999999999999999999999999999999999999999999998853  48999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~  366 (458)
                      +.+++++.+|.+..|+++.++|+.|+++++++||++|+++|+.+++.+|+|+.++++.++++||.+++.++|.+++++++
T Consensus       157 ~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~g  236 (329)
T COG0240         157 EAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMG  236 (329)
T ss_pred             HHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHH
Q 012720          367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK  446 (458)
Q Consensus       367 ~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~  446 (458)
                      ++|+||+++||++.+|||+++|..+++|.+.++.+.++++++||.++++.++++++++|+++|+++.+|++++++.+|++
T Consensus       237 LsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~~~~~~~  316 (329)
T COG0240         237 LSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYEGLDPKE  316 (329)
T ss_pred             cccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 012720          447 AVLELMSLP  455 (458)
Q Consensus       447 ~~~~l~~~~  455 (458)
                      +++.||.++
T Consensus       317 ~~~~L~~r~  325 (329)
T COG0240         317 AIEELMGRD  325 (329)
T ss_pred             HHHHHhccc
Confidence            999999876

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-52  Score=424.96  Aligned_cols=327  Identities=28%  Similarity=0.416  Sum_probs=306.5

Q ss_pred             cCCCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720          125 ERTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~iA~~La~aG-----~~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      -+.|||+|||+|+||+++|..|+++|     ++|+|.+|.|+++     .++.+++.+.+.+|+|+.++|+++.+++|++
T Consensus         9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~   88 (365)
T PTZ00345          9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK   88 (365)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence            34689999999999999999999986     2379999999986     5899999999999999999999999999999


Q ss_pred             hhcCCCCEEEEcCccccHHHHHHhhhh--cCCCCCeEEEeccCCCcchh--hhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720          195 TALLGADYCLHAMPVQFSSSFLEGISD--YVDPGLPFISLSKGLELNTL--RMMSQIIPQALRNPRQPFIALSGPSFALE  270 (458)
Q Consensus       195 ea~~~aDiVilaVp~~~v~~vl~~i~~--~l~~~~ivV~~snGi~~~t~--~~l~e~l~~~lg~~~~~~~vl~gP~~a~e  270 (458)
                      ++++++|+||++||++.++++++++.+  .++++.++|++++|+..++.  ..+++++.+.++.   ++.+++||+++.|
T Consensus        89 eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~---~~~~LsGPs~A~E  165 (365)
T PTZ00345         89 EAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI---PCCALSGANVAND  165 (365)
T ss_pred             HHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC---CeEEEECCCHHHH
Confidence            999999999999999999999999998  78878899999999998765  6789999998863   5889999999999


Q ss_pred             HhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720          271 LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI  350 (458)
Q Consensus       271 i~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~  350 (458)
                      ++.+.++.+++++.+.+..+.++++|++..|+++.++|+.|+|+++++||++|+++|+.+++++++|..++++.++++|+
T Consensus       166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em  245 (365)
T PTZ00345        166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEM  245 (365)
T ss_pred             HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC--CccccccccCCcchhhhhccCCCccchHHHHhhCC---CChHHHHhhc--cccchhhhHHHHHHHHHHH
Q 012720          351 RWLATKMGA--KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG---EKLDDILSSM--NQVAEGVSTAGAVIALAQK  423 (458)
Q Consensus       351 ~~la~a~Gi--~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g---~~~e~~~~~~--~~~~eg~kd~g~v~~lA~~  423 (458)
                      .++++++|.  ++++|++++|+||+++||++  +|||++|..+.+|   ++.+++.+++  ++++||..++..+++++++
T Consensus       246 ~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~  323 (365)
T PTZ00345        246 KLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLES  323 (365)
T ss_pred             HHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHH
Confidence            999999974  89999999999999999998  9999999999985   5788888776  8999999999999999999


Q ss_pred             cCC--CCcHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012720          424 YNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ  456 (458)
Q Consensus       424 ~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~  456 (458)
                      +++  ++|+++++|+++.++.+|+++++.||++|.
T Consensus       324 ~~i~~~~Pi~~~vy~il~~~~~~~~~~~~l~~r~~  358 (365)
T PTZ00345        324 HDLKKEFPLFTVTYKIAFEGADPSSLIDVLSTNEL  358 (365)
T ss_pred             cCCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCCC
Confidence            999  899999999999999999999999999874

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-51  Score=415.63  Aligned_cols=326  Identities=38%  Similarity=0.588  Sum_probs=307.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~-~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .+|||+|||+|+||+++|..|+++|   +|++|.|++++++.+++.+.+..+++ +.+++.++.+++|++++++++|+||
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi   82 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV   82 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence            4689999999999999999999987   48889999999999999888778887 6777878889999988889999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~  284 (458)
                      +|||+++++++++++.+++++++++|+++||++.++.+.+++.+.+.++.  ..+.++.||+++.+++.|.++.+++++.
T Consensus        83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~  160 (341)
T PRK12439         83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMP  160 (341)
T ss_pred             EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeC
Confidence            99999999999999999999889999999999998888899999887764  3567899999999999999988888888


Q ss_pred             CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012720          285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI  364 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~  364 (458)
                      +.+..+.++++|+..+|+++.++|+.+++|++++||++++++|+..++.+++|...+++.+++.|+.++++++|.+++++
T Consensus       161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~  240 (341)
T PRK12439        161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF  240 (341)
T ss_pred             CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCH
Q 012720          365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTP  444 (458)
Q Consensus       365 ~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~  444 (458)
                      ++++|+||+++||++.++||+++|..+++|++.+++.+++++++||...++.++++++++++++|+.+++|+++.++.+|
T Consensus       241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~~~~~~  320 (341)
T PRK12439        241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVINHGSTV  320 (341)
T ss_pred             cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 012720          445 KKAVLELMSLPQ  456 (458)
Q Consensus       445 ~~~~~~l~~~~~  456 (458)
                      +++++.||++|.
T Consensus       321 ~~~~~~l~~~~~  332 (341)
T PRK12439        321 EQAYRGLIAEVP  332 (341)
T ss_pred             HHHHHHHhcCCC
Confidence            999999999875

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=100.00  E-value=3e-51  Score=413.26  Aligned_cols=318  Identities=34%  Similarity=0.471  Sum_probs=301.9

Q ss_pred             eEEEECcchHHHHHHHHHHhcC------CCCeEEEEeC-----CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc
Q 012720          129 KVVVLGGGSFGTAMAAHVANKK------SQLKVYMLMR-----DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL  197 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG------~~~~V~v~~r-----~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~  197 (458)
                      ||+|||+|+||+++|..|+++|      ++++|++|.|     +++..+.+++.+.+.+|+|+.++|+++++++|+++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            6999999999999999999986      4589999999     7778889998888999999999999999999999999


Q ss_pred             CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc--hhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccC
Q 012720          198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKL  275 (458)
Q Consensus       198 ~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~--t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~  275 (458)
                      +++|+||++||++.++++++++.+++++++++|+++||+..+  +...+++.+++.++.   ++.+++||+++.|+++|.
T Consensus        81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~---~~~~lsGP~~A~Eva~~~  157 (342)
T TIGR03376        81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI---PCGVLSGANLANEVAKEK  157 (342)
T ss_pred             hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC---CeEEeeCcchHHHHHcCC
Confidence            999999999999999999999999999999999999999988  888999999998853   588999999999999999


Q ss_pred             CeEEEEccCC----HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012720          276 PTAMVVASKD----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR  351 (458)
Q Consensus       276 ~t~v~i~g~d----~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~  351 (458)
                      ++.+++++.+    .+..+.++++|++..|+++.++|+.|+|+++++||++|+++|+.+++.+++|..++++.++++||.
T Consensus       158 pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~  237 (342)
T TIGR03376       158 FSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMI  237 (342)
T ss_pred             CceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999888    899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcc--ccccccCCcchhhhhccCCCccchHHHHhhC-CCChHHHHhh--ccccchhhhHHHHHHHHHHHcCC
Q 012720          352 WLATKMGAKPA--TITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSS--MNQVAEGVSTAGAVIALAQKYNV  426 (458)
Q Consensus       352 ~la~a~Gi~~~--~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~-g~~~e~~~~~--~~~~~eg~kd~g~v~~lA~~~gv  426 (458)
                      ++++++|.+++  +|++++|+||+++||++  +||+++|..+++ |.+.+++.++  +++++||...++.++++++++++
T Consensus       238 ~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i  315 (342)
T TIGR03376       238 KFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNK  315 (342)
T ss_pred             HHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCC
Confidence            99999999887  99999999999999999  999999999999 9999998888  78999999999999999999999


Q ss_pred             C--CcHHHHHHHHHhcCCCHHHHHHHH
Q 012720          427 K--MPVLTAVARIIDNELTPKKAVLEL  451 (458)
Q Consensus       427 ~--~P~~~~v~~ll~~~~~~~~~~~~l  451 (458)
                      +  +|+++++|+++.++.+|+++++.|
T Consensus       316 ~~~~Pi~~~vy~il~~~~~~~~~~~~~  342 (342)
T TIGR03376       316 DDEFPLFEAVYQILYEGLPPKKLPECL  342 (342)
T ss_pred             CcCCCHHHHHHHHHhCCCCHHHHHhhC
Confidence            9  999999999999999999998754

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=6e-46  Score=375.00  Aligned_cols=322  Identities=36%  Similarity=0.587  Sum_probs=295.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVila  206 (458)
                      |||+|||+|+||+++|..|+++|  ++|++|+|+++.++.+++.+.+.+++++..++.+++++++.++++ .++|+||+|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g--~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia   78 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKK--ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA   78 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence            68999999999999999999999  999999999999999998776677777777888888888888766 589999999


Q ss_pred             CccccHHHHHHhhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012720          207 MPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~-~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d  285 (458)
                      ||+++++++++++.+ ++.+++.||+++||++.++...+++.+.+.++.  .++.++.||+++.+++.+.++.+.+++.+
T Consensus        79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~  156 (326)
T PRK14620         79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQN  156 (326)
T ss_pred             eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence            999999999999998 888888899999999887666677888887764  35678899999998887777777788888


Q ss_pred             HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC--Cccc
Q 012720          286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA--KPAT  363 (458)
Q Consensus       286 ~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi--~~~~  363 (458)
                      .+..++++++|+..+++++.++|+.+.+|+|++||++++++|+..++.++.|...+++.+++.|+.++++++|+  ++++
T Consensus       157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~  236 (326)
T PRK14620        157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT  236 (326)
T ss_pred             HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            88889999999999999999999999999999999999999999999999899999999999999999999998  7899


Q ss_pred             cccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCC
Q 012720          364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELT  443 (458)
Q Consensus       364 ~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~  443 (458)
                      +++++|++|++.+|++..+||+++|+++++|...+|+.+.+++++||+..++.++++++++|+++|+++++|+++.++.+
T Consensus       237 ~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~~~~~  316 (326)
T PRK14620        237 LIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLYENIS  316 (326)
T ss_pred             hhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence            99999999999999988899999999999999999999888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 012720          444 PKKAVLELMS  453 (458)
Q Consensus       444 ~~~~~~~l~~  453 (458)
                      |+++++.||.
T Consensus       317 ~~~~~~~~~~  326 (326)
T PRK14620        317 LEKTISVILS  326 (326)
T ss_pred             HHHHHHHHhC
Confidence            9999999984

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.2e-43  Score=357.25  Aligned_cols=325  Identities=44%  Similarity=0.671  Sum_probs=292.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||||+|||+|+||++||..|+++|  ++|++|+|++++++.+++.+....+.++..++.++.++++++++++++|+||+|
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNG--HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            479999999999999999999999  999999999999999988776655556655666677788888888899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~  286 (458)
                      ||+++++++++++.+.++++++||+++||+.+++.+.+++.+.+.++.. ....++.||+++.+...+.++.+.+++.+.
T Consensus        79 v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~  157 (325)
T PRK00094         79 VPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDE  157 (325)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence            9999999999999999899999999999999987778888888776531 246789999999887777777777888889


Q ss_pred             HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~  366 (458)
                      +.+++++++|+..++++..++|+.+.+|+|+++|++++++|...++++++|...+++..+++|+..+|+++|++++++.+
T Consensus       158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~  237 (325)
T PRK00094        158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG  237 (325)
T ss_pred             HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHH
Q 012720          367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK  446 (458)
Q Consensus       367 ~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~  446 (458)
                      +.+.+|++.++.+..++++.+|+++..|++.+++.+.++++.|+.||+++++++|+++|+++|+++++|+++.++.+|++
T Consensus       238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~~~~~~~~~  317 (325)
T PRK00094        238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVYELAKKLGVEMPITEAVYAVLYEGKDPRE  317 (325)
T ss_pred             ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHcCCCCHHH
Confidence            88888888888888899999999999888776666666688999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 012720          447 AVLELMSL  454 (458)
Q Consensus       447 ~~~~l~~~  454 (458)
                      +++.|+++
T Consensus       318 ~~~~~~~~  325 (325)
T PRK00094        318 AVEDLMGR  325 (325)
T ss_pred             HHHHHhcC
Confidence            99999874

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-43  Score=358.66  Aligned_cols=321  Identities=35%  Similarity=0.522  Sum_probs=283.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+|||+|||+|+||++||.+|+++|  ++|++|+|++++++.+++.+.+..++++..++.++..+++++++++++|+||+
T Consensus         3 ~~m~I~iIG~G~mG~~ia~~L~~~G--~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~   80 (328)
T PRK14618          3 HGMRVAVLGAGAWGTALAVLAASKG--VPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVV   80 (328)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence            3689999999999999999999999  99999999999999998776665566666666667788888888899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcch--hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t--~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      |||+++++++++.    ++++.++|+++||+.+++  .+.+++.+.+...   ..+.++.||+++.+++.+.++..++++
T Consensus        81 ~v~~~~~~~v~~~----l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~  153 (328)
T PRK14618         81 AVPSKALRETLAG----LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVAS  153 (328)
T ss_pred             ECchHHHHHHHHh----cCcCCEEEEEeeccccCCCccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEe
Confidence            9999988877754    456789999999998764  4566666655222   235689999999999888877777888


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      ++.+.+++++++|+..+++++.++|+.+++|++++||++++++|++.++++++|...+++.++++|+..+++++|+++++
T Consensus       154 ~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~  233 (328)
T PRK14618        154 PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEAT  233 (328)
T ss_pred             CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCC
Q 012720          364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELT  443 (458)
Q Consensus       364 ~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~  443 (458)
                      ++++++.||++.+|.+..+||+.+|.++.+|...+++. ....+.++.||+++++++++++|+++|+.+.+|+++.++.+
T Consensus       234 ~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~-~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~~~~~~  312 (328)
T PRK14618        234 FYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLE-AGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVARGGWD  312 (328)
T ss_pred             hhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHH-HcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCC
Confidence            99999999999999998999999898898886665443 23578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 012720          444 PKKAVLELMSLPQ  456 (458)
Q Consensus       444 ~~~~~~~l~~~~~  456 (458)
                      |+++++.|+++|.
T Consensus       313 ~~~~~~~~~~~~~  325 (328)
T PRK14618        313 PLAGLRSLMGREA  325 (328)
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999999874

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-42  Score=346.42  Aligned_cols=298  Identities=37%  Similarity=0.584  Sum_probs=274.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .|||+|||+|+||++||.+|+++|  |+|++|+|++.                           ++++++++++|+||+|
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G--~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANG--HRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC--CEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            479999999999999999999999  99999999852                           1566778899999999


Q ss_pred             CccccHHHHHHhhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012720          207 MPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~-l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d  285 (458)
                      +|+.+++++++++.++ ++++++||++++|+++++...+++.+.+.+..  .++.++.||.++.++..+.++..++++++
T Consensus        55 vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~  132 (308)
T PRK14619         55 VSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRD  132 (308)
T ss_pred             CChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCC
Confidence            9999999999998764 77889999999999998878888888776643  35667899999999888877788889999


Q ss_pred             HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 012720          286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATIT  365 (458)
Q Consensus       286 ~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~  365 (458)
                      .+.+++++++|+..+++++.++|+.+.+|++++||++++++|+..++++++|...+++.++++|+.++++++|+++++++
T Consensus       133 ~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~  212 (308)
T PRK14619        133 LAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFY  212 (308)
T ss_pred             HHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHH
Q 012720          366 GLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPK  445 (458)
Q Consensus       366 ~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~  445 (458)
                      +++|+||+..+|.+..+||+++|+++..|++.+++.++.++++||.||+++++++++++|+++|+.+.+|+++.++.+|+
T Consensus       213 ~~~g~gd~~~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~~~~~~~  292 (308)
T PRK14619        213 GLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQGEITPQ  292 (308)
T ss_pred             cccchhhhheeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCCCHH
Confidence            99999999999998889999999999999999888888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCC
Q 012720          446 KAVLELMSLP  455 (458)
Q Consensus       446 ~~~~~l~~~~  455 (458)
                      ++++.|++++
T Consensus       293 ~~~~~l~~~~  302 (308)
T PRK14619        293 QALEELMERD  302 (308)
T ss_pred             HHHHHHHcCC
Confidence            9999999974

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=100.00  E-value=3.7e-41  Score=327.46  Aligned_cols=326  Identities=36%  Similarity=0.535  Sum_probs=291.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-------HHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-------VCQSINEKHCNCRYFPEQKLPENVIATTDA  193 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG-----~~~~V~v~~r~~~-------~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~  193 (458)
                      ...||+|||+|+||++||+.+.++-     +..+|.+|.+.++       ..|-|+..+.+.+|+|+.++|.++.+++|+
T Consensus        20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl   99 (372)
T KOG2711|consen   20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL   99 (372)
T ss_pred             CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence            3579999999999999999998752     2468999986642       345678888999999999999999999999


Q ss_pred             HhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc----hhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012720          194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN----TLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (458)
Q Consensus       194 ~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~----t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~  269 (458)
                      .+++++||++|+.+|.+.+..++++|..+++++...||++||++..    ..+.+++.+.+.+|.   ++.++.||+.|.
T Consensus       100 ~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI---~~~vL~GaNiA~  176 (372)
T KOG2711|consen  100 VEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI---PCSVLMGANIAS  176 (372)
T ss_pred             HHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC---CceeecCCchHH
Confidence            9999999999999999999999999999999999999999999853    256889999999985   578999999999


Q ss_pred             HHhccCCeEEEEccCCHHHHH-HHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720          270 ELMNKLPTAMVVASKDRKLAN-AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS  348 (458)
Q Consensus       270 ei~~g~~t~v~i~g~d~e~~e-~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~  348 (458)
                      |++++..+...+++.++.... .+..+|++..|++...+|..+++++++|||++|+++|+.+++.+++|...++++.++.
T Consensus       177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~  256 (372)
T KOG2711|consen  177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLL  256 (372)
T ss_pred             HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHH
Confidence            999998888888887655444 4999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc-CC-CccccccccCCcchhhhhccCCCccchHHHHhhCC-CChHHHHhhc--cccchhhhHHHHHHHHHHH
Q 012720          349 EIRWLATKM-GA-KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSM--NQVAEGVSTAGAVIALAQK  423 (458)
Q Consensus       349 E~~~la~a~-Gi-~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g-~~~e~~~~~~--~~~~eg~kd~g~v~~lA~~  423 (458)
                      |+..+++.+ .. .++++.+.+|++|++.||++  .||++.+..+.++ +++++.+..+  +|..+|..+++.++++.++
T Consensus       257 Em~~F~~~f~p~~~~~t~~escGvaDlitTC~g--GRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~  334 (372)
T KOG2711|consen  257 EMIKFATHFYPGSKPTTFFESCGVADLITTCYG--GRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQK  334 (372)
T ss_pred             HHHHHHHHhCCCCCcceeeccccHHHHHHHHhc--CccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHH
Confidence            999999996 33 78899999999999999997  5899988887664 7766555444  7899999999999999999


Q ss_pred             cCC--CCcHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012720          424 YNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ  456 (458)
Q Consensus       424 ~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~  456 (458)
                      .|+  .+|+..++|+++.++..++++++.|.++|.
T Consensus       335 ~~l~~kfPlftaVykI~~~~~~~~~lle~l~~~~~  369 (372)
T KOG2711|consen  335 KGLVEKFPLFTAVYKICYERLPPQALLECLRNHPE  369 (372)
T ss_pred             cChhhhCcHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence            999  899999999999999999999999998874

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.97  E-value=2.8e-30  Score=252.52  Aligned_cols=256  Identities=19%  Similarity=0.210  Sum_probs=203.2

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +||+|||+|.||.+||.+|.++|  |+|++|+|++++ ++.+.+.|              .....++.|+++++|+||+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG--~~v~v~~r~~~ka~~~~~~~G--------------a~~a~s~~eaa~~aDvVitm   64 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAG--HEVTVYNRTPEKAAELLAAAG--------------ATVAASPAEAAAEADVVITM   64 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCC--CEEEEEeCChhhhhHHHHHcC--------------CcccCCHHHHHHhCCEEEEe
Confidence            58999999999999999999999  999999999988 55665555              34556888889999999999


Q ss_pred             Ccc-ccHHHHHH---hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MPV-QFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp~-~~v~~vl~---~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |+. .++++|+.   ++.+.+++|+++|+++ ++++++.+.+++.+++. |.     .++..|..+........+..++.
T Consensus        65 v~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS-Tisp~~a~~~a~~~~~~-G~-----~~lDAPVsGg~~~A~~GtLtimv  137 (286)
T COG2084          65 LPDDAAVRAVLFGENGLLEGLKPGAIVIDMS-TISPETARELAAALAAK-GL-----EFLDAPVSGGVPGAAAGTLTIMV  137 (286)
T ss_pred             cCCHHHHHHHHhCccchhhcCCCCCEEEECC-CCCHHHHHHHHHHHHhc-CC-----cEEecCccCCchhhhhCceEEEe
Confidence            996 67999994   5888899999999999 69998878888777664 43     46677766655544455667888


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~  362 (458)
                      |++++.+++++++|+..|.++++.++.                 |.+..+|+.||.+......++.|++.+++++|++++
T Consensus       138 GG~~~~f~r~~pvl~~~g~~i~~~G~~-----------------G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~  200 (286)
T COG2084         138 GGDAEAFERAKPVLEAMGKNIVHVGPV-----------------GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPD  200 (286)
T ss_pred             CCCHHHHHHHHHHHHHhcCceEEECCC-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            999999999999999999999988774                 556677888999999999999999999999999999


Q ss_pred             cccccc--CCcch-hhh--hccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          363 TITGLS--GTGDI-MLT--CFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       363 ~~~~~~--g~gd~-~~t--~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      .++++.  +.++. +..  +..+..++|+++      +...          ...||++++.+.|++.|+++|+.+++.++
T Consensus       201 ~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~------F~v~----------~~~KDl~la~~~A~~~g~~lP~~~~~~~l  264 (286)
T COG2084         201 VVLEVISGGAAGSWILENYGPRMLEGDFSPG------FAVD----------LMLKDLGLALDAAKELGAPLPLTALAAEL  264 (286)
T ss_pred             HHHHHHhccccCChHHHhhcchhhcCCCCcc------hhHH----------HHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            998763  22221 111  111122233322      2222          24699999999999999999999999888


Q ss_pred             Hh
Q 012720          438 ID  439 (458)
Q Consensus       438 l~  439 (458)
                      +.
T Consensus       265 y~  266 (286)
T COG2084         265 YA  266 (286)
T ss_pred             HH
Confidence            85

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.96  E-value=4.2e-28  Score=243.72  Aligned_cols=287  Identities=14%  Similarity=0.154  Sum_probs=201.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccC-CCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF-PEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~-~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .|||+|||+|+||+.+|..|+++|  ++|+++.|++  .+.+++.|+..... +..... .+.+.+++++ ...+|+||+
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~-~~~~D~vil   78 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD--YEAVRENGLQVDSVHGDFHLP-PVQAYRSAED-MPPCDWVLV   78 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC--HHHHHhCCeEEEeCCCCeeec-CceEEcchhh-cCCCCEEEE
Confidence            579999999999999999999999  9999999986  35676666532211 111111 1344555543 578999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CC-----EEEEECcccHHHHhccCCeEE
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QP-----FIALSGPSFALELMNKLPTAM  279 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~-~~-----~~vl~gP~~a~ei~~g~~t~v  279 (458)
                      |||+.++.++++.+.+.+.++++|++++||++..      +.+.+.++... ..     .+...+|+...+...|.....
T Consensus        79 avK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG  152 (313)
T PRK06249         79 GLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVE------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLG  152 (313)
T ss_pred             EecCCChHhHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEe
Confidence            9999999999999999999999999999999875      34444444321 11     112335554443222322111


Q ss_pred             EEccCC-----HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHH
Q 012720          280 VVASKD-----RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEI  350 (458)
Q Consensus       280 ~i~g~d-----~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~  350 (458)
                      ...+.+     .+..+.+.++|+..|+.+..++|+....|.|++.|+..++.+....+..+    +.....++..++.|+
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~  232 (313)
T PRK06249        153 YHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEV  232 (313)
T ss_pred             cCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHH
Confidence            122223     46778899999999999999999999999999999766655555544433    334578999999999


Q ss_pred             HHHHHHcCCCccc-cccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCC
Q 012720          351 RWLATKMGAKPAT-ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM  428 (458)
Q Consensus       351 ~~la~a~Gi~~~~-~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~  428 (458)
                      .+++++.|++... +.+     ..+..+... ..+ .+|-+|+.+||++| +          ...+|.++++|+++|+++
T Consensus       233 ~~va~a~Gi~~~~~~~~-----~~~~~~~~~-~~~~sSM~qD~~~gr~tE-i----------d~i~G~vv~~a~~~Gi~~  295 (313)
T PRK06249        233 IQGAAACGHTLPEGYAD-----HMLAVTERM-PDYRPSMYHDFEEGRPLE-L----------EAIYANPLAAARAAGCAM  295 (313)
T ss_pred             HHHHHhcCCCCChhHHH-----HHHHHhhcC-CCCCChHHHHHHCCCccc-H----------HHHhhHHHHHHHHhCCCC
Confidence            9999999998432 111     111111111 122 34667888888775 3          356799999999999999


Q ss_pred             cHHHHHHHHHhcCC
Q 012720          429 PVLTAVARIIDNEL  442 (458)
Q Consensus       429 P~~~~v~~ll~~~~  442 (458)
                      |+++.+|.+++..+
T Consensus       296 P~~~~l~~~l~~~e  309 (313)
T PRK06249        296 PRVEMLYQALEFLD  309 (313)
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999987654

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.96  E-value=1.1e-27  Score=238.80  Aligned_cols=285  Identities=18%  Similarity=0.219  Sum_probs=205.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|+||+.+|..|+++|  ++|++++|+++.++.+++.|....   +......+..+++++++ +++|+||+||
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~-~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAG--HDVTLVARRGAHLDALNENGLRLE---DGEITVPVLAADDPAEL-GPQDLVILAV   74 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECChHHHHHHHHcCCccc---CCceeecccCCCChhHc-CCCCEEEEec
Confidence            68999999999999999999999  999999998888888887765431   11111112334566664 8999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-CC-----CEEEEECcccHHHHhccCCeEEEE
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQ-----PFIALSGPSFALELMNKLPTAMVV  281 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~-~~-----~~~vl~gP~~a~ei~~g~~t~v~i  281 (458)
                      |++++.++++.+.+.+.++++||+++||++..      +.+.+.++.. ..     ..+...+|+...+.+.+.   +.+
T Consensus        75 k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~---~~i  145 (304)
T PRK06522         75 KAYQLPAALPSLAPLLGPDTPVLFLQNGVGHL------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR---LKI  145 (304)
T ss_pred             ccccHHHHHHHHhhhcCCCCEEEEecCCCCcH------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC---EEE
Confidence            99999999999999998889999999999764      2333433321 00     112355676665544332   234


Q ss_pred             ccCC--HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHH
Q 012720          282 ASKD--RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLAT  355 (458)
Q Consensus       282 ~g~d--~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~~~la~  355 (458)
                      +..+  .+..+.+.++|+..++.+...+|+...+|.|+++|+..++.+...+...+    ++....++..++.|+.++++
T Consensus       146 g~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~  225 (304)
T PRK06522        146 GEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAE  225 (304)
T ss_pred             eCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHH
Confidence            4322  24578899999999999999999999999999999876666555555433    35677999999999999999


Q ss_pred             HcCCCccccccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHH
Q 012720          356 KMGAKPATITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV  434 (458)
Q Consensus       356 a~Gi~~~~~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v  434 (458)
                      ++|+++..-. +   .+.+.........+ .+|-+|+.+|+++| +          ...+|+++++|+++|+++|+++++
T Consensus       226 a~G~~~~~~~-~---~~~~~~~~~~~~~~~sSm~~D~~~gr~tE-i----------d~i~G~~v~~a~~~gv~~P~~~~l  290 (304)
T PRK06522        226 AEGVHLSVEE-V---REYVRQVIQKTAANTSSMLQDLEAGRPTE-I----------DAIVGYVLRRGRKHGIPTPLNDAL  290 (304)
T ss_pred             HcCCCCChHH-H---HHHHHHHhhccCCCCchHHHHHHcCCCcc-c----------chhccHHHHHHHHcCCCCcHHHHH
Confidence            9998854211 0   01111111111122 24667888887765 2          256799999999999999999999


Q ss_pred             HHHHhcCC
Q 012720          435 ARIIDNEL  442 (458)
Q Consensus       435 ~~ll~~~~  442 (458)
                      |++++..+
T Consensus       291 ~~~~~~~~  298 (304)
T PRK06522        291 YGLLKAKE  298 (304)
T ss_pred             HHHHHHHH
Confidence            99997654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.96  E-value=7.2e-28  Score=240.61  Aligned_cols=288  Identities=19%  Similarity=0.221  Sum_probs=211.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|+|+|+||+.+|.+|+++|  ++|+++.|++. ++++++.|+......+ ........+.+. +....+|+||++|
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~-~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDA-EALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCC-ccccccccccCh-hhcCCCCEEEEEe
Confidence            79999999999999999999999  99999999986 8999998875544333 111112223333 3467999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------CCCEEEEECcccHHHHhccCCeEEEE
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------RQPFIALSGPSFALELMNKLPTAMVV  281 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~------~~~~~vl~gP~~a~ei~~g~~t~v~i  281 (458)
                      |+.+++++++.+.+.+++.+.|+.+|||+++.      |.+.+.++..      ....++..||+...+.+.|......+
T Consensus        76 Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~~------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~  149 (307)
T COG1893          76 KAYQLEEALPSLAPLLGPNTVVLFLQNGLGHE------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGEL  149 (307)
T ss_pred             ccccHHHHHHHhhhcCCCCcEEEEEeCCCcHH------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccC
Confidence            99999999999999999999999999999985      2333333321      11223455666665444344333334


Q ss_pred             ccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHc
Q 012720          282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKM  357 (458)
Q Consensus       282 ~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~~~la~a~  357 (458)
                      .+++++..+.+.++|+..++++.+++|+....|.|++.|...++.+....++++    +.....++...+.|+..++++.
T Consensus       150 ~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~  229 (307)
T COG1893         150 RGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE  229 (307)
T ss_pred             CCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc
Confidence            455568899999999999999999999999999999999876666655555443    3356789999999999999999


Q ss_pred             CCCcc-ccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHH
Q 012720          358 GAKPA-TITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVA  435 (458)
Q Consensus       358 Gi~~~-~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~  435 (458)
                      |+..+ ...+-     ....+......++ +|-+|+.+|+++| +          .+..|+++++|+++|+++|.++++|
T Consensus       230 g~~~~~~~~~~-----v~~~~~~~~~~~~sSM~qDl~~gr~tE-i----------d~i~G~vv~~a~~~gi~~P~~~~L~  293 (307)
T COG1893         230 GVELPEEVVER-----VLAVIRATDAENYSSMLQDLEKGRPTE-I----------DAINGAVVRLAKKHGLATPVNDTLY  293 (307)
T ss_pred             cCCCCHHHHHH-----HHHHHHhcccccCchHHHHHHcCCccc-H----------HHHhhHHHHHHHHhCCCCcHHHHHH
Confidence            96522 11110     1111112112333 4668888887775 2          3667999999999999999999999


Q ss_pred             HHHhcCC
Q 012720          436 RIIDNEL  442 (458)
Q Consensus       436 ~ll~~~~  442 (458)
                      ++++..+
T Consensus       294 ~lvk~~e  300 (307)
T COG1893         294 ALLKAKE  300 (307)
T ss_pred             HHHHHHH
Confidence            9998654

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.96  E-value=3.5e-27  Score=235.52  Aligned_cols=286  Identities=15%  Similarity=0.151  Sum_probs=201.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC-CCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~-~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|||+|+||+.+|..|+++|  ++|++|+| +++.+.+++.|.......+ ...+  ...+++.+++.+.+|+||+|
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~vila   75 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVP--GPVITDPEELTGPFDLVILA   75 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEEeCCCeEEec--ceeecCHHHccCCCCEEEEE
Confidence            68999999999999999999999  99999999 7788888876654322111 1111  23345666666899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CC-E----EEEECcccHHHHhccCCeEEE
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QP-F----IALSGPSFALELMNKLPTAMV  280 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~-~~-~----~vl~gP~~a~ei~~g~~t~v~  280 (458)
                      ||+.+++++++.+.+.+.++++||+++||++..      +.+.+.++... .. +    +.+.+|+.....  + ...+.
T Consensus        76 vk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~--~-~~~~~  146 (305)
T PRK12921         76 VKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQL------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQR--A-DHRLT  146 (305)
T ss_pred             ecccCHHHHHHHHHhhcCCCCEEEEeeCCCChH------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEc--C-CCcEE
Confidence            999999999999999888899999999999754      23444443211 11 1    122234333221  1 11233


Q ss_pred             Ecc---CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccC----CCcHHHHHHHHHHHHHHHH
Q 012720          281 VAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNL----GNNSMAALVAQGCSEIRWL  353 (458)
Q Consensus       281 i~g---~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl----~~n~~~al~~~~l~E~~~l  353 (458)
                      ++.   ...+..+.+.++|...++++...+|+...+|.|++.|...++.+.....++    .++....++..++.|+.++
T Consensus       147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v  226 (305)
T PRK12921        147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAV  226 (305)
T ss_pred             EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHH
Confidence            443   234677889999999999999999999999999999976665555544442    3455678999999999999


Q ss_pred             HHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHH
Q 012720          354 ATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLT  432 (458)
Q Consensus       354 a~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~  432 (458)
                      ++++|+++......    +.+.........++ ++-+|+.+||++| +          ....|+++++|+++|+++|+++
T Consensus       227 ~~a~G~~~~~~~~~----~~~~~~~~~~~~~~sSm~~D~~~gr~tE-i----------d~i~G~vv~~a~~~gv~~P~~~  291 (305)
T PRK12921        227 ARAEGAPLRDDVVE----EIVKIFAGAPGDMKTSMLRDMEKGRPLE-I----------DHLQGVLLRRARAHGIPTPILD  291 (305)
T ss_pred             HHHcCCCCChhHHH----HHHHHHhccCCCCCcHHHHHHHcCCccc-H----------HHHHHHHHHHHHHhCCCCcHHH
Confidence            99999985421100    01111011111222 4667888887765 2          3567999999999999999999


Q ss_pred             HHHHHHhcCC
Q 012720          433 AVARIIDNEL  442 (458)
Q Consensus       433 ~v~~ll~~~~  442 (458)
                      ++|++++..+
T Consensus       292 ~l~~~~~~~~  301 (305)
T PRK12921        292 TVYALLKAYE  301 (305)
T ss_pred             HHHHHHHHHh
Confidence            9999997654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.95  E-value=1.6e-26  Score=234.53  Aligned_cols=288  Identities=18%  Similarity=0.252  Sum_probs=200.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC---CCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~---l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      ||||+|||+|.||+++|..|+++|  ++|++|+|++. .+.+++.|.......+..   .+..+..+++. +++.++|+|
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G--~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAG--ADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcC--CcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            589999999999999999999999  99999999763 577777665432222211   12335556666 457899999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-CCC-----EEEEECcccHHHHhccCCe
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQP-----FIALSGPSFALELMNKLPT  277 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~-~~~-----~~vl~gP~~a~ei~~g~~t  277 (458)
                      |+|||+.++.++++.+.+.+.++++|++++||+...      +.+.+.++.. ...     .++..||+.+.+...|.  
T Consensus        78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~--  149 (341)
T PRK08229         78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGA--  149 (341)
T ss_pred             EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCc--
Confidence            999999999999999999999999999999998763      2344443321 111     12455776654332332  


Q ss_pred             EEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHHHHHHH
Q 012720          278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN----LGNNSMAALVAQGCSEIRWL  353 (458)
Q Consensus       278 ~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~k----l~~n~~~al~~~~l~E~~~l  353 (458)
                       +.++.  .+.++++.++|+..++++.+.+|+.+..|.|+++|.+ ++.....+..    +.+.....++..++.|+..+
T Consensus       150 -l~~~~--~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~v  225 (341)
T PRK08229        150 -LAIEA--SPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRV  225 (341)
T ss_pred             -eEecC--CchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHH
Confidence             22332  2456899999999999999999999999999999973 3323222332    23445678899999999999


Q ss_pred             HHHcCCCcccccccc--C------Ccchh-hh----hcc-CCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHH
Q 012720          354 ATKMGAKPATITGLS--G------TGDIM-LT----CFV-NLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIA  419 (458)
Q Consensus       354 a~a~Gi~~~~~~~~~--g------~gd~~-~t----~~~-~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~  419 (458)
                      |++.|++++.+..+.  +      +.+.+ ..    ... ......++-+|+.+||++| +          ...+|++++
T Consensus       226 a~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sm~~D~~~~r~tE-i----------~~i~G~i~~  294 (341)
T PRK08229        226 LKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLARSSMSDDLAAGRATE-I----------DWINGEIVR  294 (341)
T ss_pred             HHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCccCchHHHHHHcCCcch-H----------HHHhhHHHH
Confidence            999999977654321  1      01100 00    001 1111124567777777764 2          256799999


Q ss_pred             HHHHcCCCCcHHHHHHHHHhcC
Q 012720          420 LAQKYNVKMPVLTAVARIIDNE  441 (458)
Q Consensus       420 lA~~~gv~~P~~~~v~~ll~~~  441 (458)
                      +|+++|+++|+++++|++++..
T Consensus       295 ~a~~~gv~~P~~~~~~~~~~~~  316 (341)
T PRK08229        295 LAGRLGAPAPVNARLCALVHEA  316 (341)
T ss_pred             HHHHcCCCCcHHHHHHHHHHHH
Confidence            9999999999999999999644

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.95  E-value=6.2e-27  Score=225.31  Aligned_cols=274  Identities=17%  Similarity=0.183  Sum_probs=211.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|||||+|+||..|+.+|.++|  |.|++|||+.++++.+.+.|.              ++.++|.|+.+.+|+||.+
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~G--~kVtV~dr~~~k~~~f~~~Ga--------------~v~~sPaeVae~sDvvitm   98 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKAG--YKVTVYDRTKDKCKEFQEAGA--------------RVANSPAEVAEDSDVVITM   98 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHcC--CEEEEEeCcHHHHHHHHHhch--------------hhhCCHHHHHhhcCEEEEE
Confidence            578999999999999999999999  999999999999999998773              4667899999999999999


Q ss_pred             Ccc-ccHHHHHHh---hhhcCCCCCeE-EEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012720          207 MPV-QFSSSFLEG---ISDYVDPGLPF-ISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (458)
Q Consensus       207 Vp~-~~v~~vl~~---i~~~l~~~~iv-V~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i  281 (458)
                      ||. .++++++.+   +...++++... |+++ +++|++...+.+.+...      .+.++.+|.++...+....+.+++
T Consensus        99 v~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmS-Tidp~~s~ei~~~i~~~------~~~~vDAPVSGg~~~A~~G~Ltim  171 (327)
T KOG0409|consen   99 VPNPKDVKDVLLGKSGVLSGIRPGKKATVDMS-TIDPDTSLEIAKAISNK------GGRFVDAPVSGGVKGAEEGTLTIM  171 (327)
T ss_pred             cCChHhhHHHhcCCCcceeeccCCCceEEecc-ccCHHHHHHHHHHHHhC------CCeEEeccccCCchhhhcCeEEEE
Confidence            996 568888854   45555677666 8888 79998766666655443      356788888876555445566788


Q ss_pred             ccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720          282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (458)
Q Consensus       282 ~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~  361 (458)
                      +++|++.++++.++|+..|..+.+.+.+                 |.+..+|+++|.+.+....+++|++.+|+++|+++
T Consensus       172 agGde~~~~~~~~~~~~mGk~~~~~G~~-----------------GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~  234 (327)
T KOG0409|consen  172 AGGDEALFEAASPVFKLMGKNVVFLGGV-----------------GNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDA  234 (327)
T ss_pred             ecCcHHHHHHHHHHHHHhcceEEEeccc-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            8899999999999999999888776543                 66677889999999999999999999999999999


Q ss_pred             cccccccCCcc-----hhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720          362 ATITGLSGTGD-----IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR  436 (458)
Q Consensus       362 ~~~~~~~g~gd-----~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~  436 (458)
                      .++.++...|.     +...+..+..++      +.-|+.++.          ..||++++.+.|+..++++|+.....+
T Consensus       235 ~~l~eiln~G~~~S~~~~~~~p~m~k~d------y~p~f~~~~----------m~KDLgla~~~a~~~~~~~P~~slA~q  298 (327)
T KOG0409|consen  235 KKLLEILNTGRCWSSMFYNPVPGMLKGD------YNPGFALKL----------MVKDLGLALNAAESVKVPMPLGSLAHQ  298 (327)
T ss_pred             HHHHHHHhcCCcccHHHhCcCchhhcCC------CCCcchHHH----------HHHHHHHHHHhhhccCCCCchHHHHHH
Confidence            99887632221     111111111122      222334432          249999999999999999999988888


Q ss_pred             HHh-------cCCCHHHHHHHHhcCCC
Q 012720          437 IID-------NELTPKKAVLELMSLPQ  456 (458)
Q Consensus       437 ll~-------~~~~~~~~~~~l~~~~~  456 (458)
                      +++       .+.+...+++....+..
T Consensus       299 ly~~~~a~G~g~~Dfs~V~~~~~~~~~  325 (327)
T KOG0409|consen  299 LYKSMKALGYGDKDFSAVYRAFRRLNG  325 (327)
T ss_pred             HHHHHHhcCCCccccHHHHHHHHHhcc
Confidence            773       45666667766655443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.95  E-value=9e-27  Score=233.20  Aligned_cols=283  Identities=16%  Similarity=0.114  Sum_probs=197.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCC-CCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQ-KLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~-~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .|||+|||+|+||+.+|.+|+++|  ++|++++|+.+++++++++ |+........ .++  +.. .+.+ ....+|+||
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~--~~~-~~~~-~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA--IPA-ETAD-AAEPIHRLL   75 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEEeeCCcceeec--cCC-CCcc-cccccCEEE
Confidence            479999999999999999999999  9999999998889999864 4422111111 111  111 1222 246789999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CCEE-----EEECcccHHHHhccCCeE
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QPFI-----ALSGPSFALELMNKLPTA  278 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~-~~~~-----vl~gP~~a~ei~~g~~t~  278 (458)
                      +|||++++.++++.+.+++.+++.||++|||++.+      +.+.+.++... ....     ...+|+...+.+.+   .
T Consensus        76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g---~  146 (305)
T PRK05708         76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQ------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHG---F  146 (305)
T ss_pred             EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCH------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceE---E
Confidence            99999999999999999999999999999999975      33444444321 1111     12245444322211   2


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHHHHHHHc
Q 012720          279 MVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM-AALVAQGCSEIRWLATKM  357 (458)
Q Consensus       279 v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~-~al~~~~l~E~~~la~a~  357 (458)
                      +.++..+.+..+++.++|...|+++..++|+....|.|++.|...++.+.....+.+.-.. ..++...+.|+.+++++.
T Consensus       147 ~~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~  226 (305)
T PRK05708        147 TWLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRC  226 (305)
T ss_pred             EEEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHc
Confidence            3455444556788999999999999999999999999999998666656555554442110 156789999999999999


Q ss_pred             CCCccc--cccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHH
Q 012720          358 GAKPAT--ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV  434 (458)
Q Consensus       358 Gi~~~~--~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v  434 (458)
                      |+....  +.+.     ....+... ..+ .+|-+|+.+||++| +        |  ..+|+++++|+++|+++|+++++
T Consensus       227 G~~~~~~~~~~~-----~~~~~~~~-~~~~sSM~qD~~~gR~tE-i--------d--~i~G~vvr~a~~~Gv~~P~~~~l  289 (305)
T PRK05708        227 GQPAAAANLHEE-----VQRVIQAT-AANYSSMYQDVRAGRRTE-I--------S--YLLGYACRAADRHGLPLPRLQHL  289 (305)
T ss_pred             CCCccHHHHHHH-----HHHHHHhc-cCCCcHHHHHHHcCCcee-e--------h--hhhhHHHHHHHHcCCCCchHHHH
Confidence            987331  1110     00001111 122 25677888888775 2        2  56799999999999999999999


Q ss_pred             HHHHhcC
Q 012720          435 ARIIDNE  441 (458)
Q Consensus       435 ~~ll~~~  441 (458)
                      |++++..
T Consensus       290 ~~~v~~~  296 (305)
T PRK05708        290 QQRLVAH  296 (305)
T ss_pred             HHHHHHH
Confidence            9998653

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.94  E-value=1.5e-25  Score=223.55  Aligned_cols=272  Identities=14%  Similarity=0.163  Sum_probs=194.5

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      +||+|||+|.||..||..|+++|  ++|++|+|++++++.+.+.|.              ..+.++.++++++|+||+|+
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G--~~V~v~d~~~~~~~~~~~~g~--------------~~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQG--HQLQVFDVNPQAVDALVDKGA--------------TPAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcCC--------------cccCCHHHHHhcCCEEEEec
Confidence            58999999999999999999999  999999999999988877542              24457788889999999999


Q ss_pred             ccc-cHHHHHH---hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          208 PVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       208 p~~-~v~~vl~---~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      |+. .+++++.   ++.+.+++++++|++++ +.+.+.+.+.+.+.+. |.     .++.+|...........+..++.+
T Consensus        66 p~~~~~~~vl~~~~~i~~~l~~g~lvid~sT-~~p~~~~~l~~~l~~~-g~-----~~ldapV~g~~~~a~~g~l~~~~g  138 (296)
T PRK15461         66 PNGDLVRSVLFGENGVCEGLSRDALVIDMST-IHPLQTDKLIADMQAK-GF-----SMMDVPVGRTSDNAITGTLLLLAG  138 (296)
T ss_pred             CCHHHHHHHHcCcccHhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc-CC-----cEEEccCCCCHHHHHhCcEEEEEC
Confidence            986 5888874   45667888999999994 6666666666666543 32     355666544322222233445677


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      ++++.+++++++|+..+.++++.++.                 |.+..+|+.+|.+......++.|+..++++.|++++.
T Consensus       139 g~~~~~~~~~p~l~~~g~~~~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~  201 (296)
T PRK15461        139 GTAEQVERATPILMAMGNELINAGGP-----------------GMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDV  201 (296)
T ss_pred             CCHHHHHHHHHHHHHHcCCeEeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            78999999999999988888877764                 4445567777877777788999999999999999988


Q ss_pred             ccccc--CCcc-hhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh-
Q 012720          364 ITGLS--GTGD-IMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID-  439 (458)
Q Consensus       364 ~~~~~--g~gd-~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~-  439 (458)
                      ++++.  +.+. .......   ..+-...++..+++++          ...||+++++++|+++|+++|+.+.+.+++. 
T Consensus       202 ~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~----------~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~  268 (296)
T PRK15461        202 ALKVMSGTAAGKGHFTTTW---PNKVLKGDLSPAFMID----------LAHKDLGIALDVANQLHVPMPLGAASREVYSQ  268 (296)
T ss_pred             HHHHHhcCcccChHHHccc---cchhccCCCCCCcchH----------HHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            87652  1111 1100000   0000001122223332          2459999999999999999999999998883 


Q ss_pred             ------cCCCHHHHHHHHh
Q 012720          440 ------NELTPKKAVLELM  452 (458)
Q Consensus       440 ------~~~~~~~~~~~l~  452 (458)
                            ...+...+++.+.
T Consensus       269 a~~~g~g~~d~~~~~~~~~  287 (296)
T PRK15461        269 ARAAGRGRQDWSAILEQVR  287 (296)
T ss_pred             HHhcCCCCCChHHHHHHHH
Confidence                  3556666666554

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.94  E-value=4e-25  Score=219.84  Aligned_cols=271  Identities=17%  Similarity=0.189  Sum_probs=192.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|+||.+||.+|.++|  ++|++|+|++. .+.+.+.|              +....++.++++++|+||+||
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G--~~v~v~~~~~~-~~~~~~~g--------------~~~~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAG--HQLHVTTIGPV-ADELLSLG--------------AVSVETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCC--CeEEEEeCCHh-HHHHHHcC--------------CeecCCHHHHHhcCCEEEEeC
Confidence            58999999999999999999999  99999999874 55665433              234457888889999999999


Q ss_pred             ccc-cHHHHHHh---hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          208 PVQ-FSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       208 p~~-~v~~vl~~---i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      |.. ++++++.+   +.+.+.++++||+++ ++.+++.+.+.+.+.+. |.     .++.+|...........+..++.+
T Consensus        64 ~~~~~v~~v~~~~~g~~~~~~~g~ivvd~s-T~~p~~~~~~~~~~~~~-G~-----~~vdaPVsGg~~~a~~g~l~~~~g  136 (292)
T PRK15059         64 PDTPQVEEVLFGENGCTKASLKGKTIVDMS-SISPIETKRFARQVNEL-GG-----DYLDAPVSGGEIGAREGTLSIMVG  136 (292)
T ss_pred             CChHHHHHHHcCCcchhccCCCCCEEEECC-CCCHHHHHHHHHHHHHc-CC-----CEEEecCCCCHHHHhcCcEEEEEc
Confidence            975 68888743   566677899999998 68887777777776654 43     245555554433322333445667


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      ++++.+++++++|+..+.++++.++.                 |.+..+|+.+|.+......++.|++.++++.|+++++
T Consensus       137 G~~~~~~~~~p~l~~~g~~~~~~G~~-----------------G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~  199 (292)
T PRK15059        137 GDEAVFERVKPLFELLGKNITLVGGN-----------------GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVR  199 (292)
T ss_pred             CCHHHHHHHHHHHHHHcCCcEEeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            78999999999999988877776663                 4445566777787777788999999999999999998


Q ss_pred             ccccc--CCcch-hhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh-
Q 012720          364 ITGLS--GTGDI-MLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID-  439 (458)
Q Consensus       364 ~~~~~--g~gd~-~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~-  439 (458)
                      ++++.  +.+.. +.....    .+....++..+++++          ...||+++++++|++.|+++|+.+.+.+++. 
T Consensus       200 ~~~~l~~~~~~s~~~~~~~----~~~~~~~~~~~f~l~----------~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~  265 (292)
T PRK15059        200 VRQALMGGFASSRILEVHG----ERMIKRTFNPGFKIA----------LHQKDLNLALQSAKALALNLPNTATCQELFNT  265 (292)
T ss_pred             HHHHHHcCcccCHHHHhhc----hhhhcCCCCCCCchH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            87652  11111 100000    000011122233333          2459999999999999999999999988883 


Q ss_pred             ------cCCCHHHHHHHHhc
Q 012720          440 ------NELTPKKAVLELMS  453 (458)
Q Consensus       440 ------~~~~~~~~~~~l~~  453 (458)
                            .+++...+++.+..
T Consensus       266 a~~~g~g~~D~sa~~~~~~~  285 (292)
T PRK15059        266 CAANGGSQLDHSALVQALEL  285 (292)
T ss_pred             HHhcCCCcCChHHHHHHHHH
Confidence                  35556666665544

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.93  E-value=2.9e-25  Score=201.35  Aligned_cols=156  Identities=42%  Similarity=0.605  Sum_probs=138.4

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp  208 (458)
                      ||+|||+|+||+++|..|+++|  ++|++|.|+++.++.+++.+.+..|+++..++.++.+++|++++++++|+||++||
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP   78 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP   78 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred             CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence            7999999999999999999999  99999999999999999999888999999999999999999999999999999999


Q ss_pred             cccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHH
Q 012720          209 VQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL  288 (458)
Q Consensus       209 ~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~  288 (458)
                      ++.++++++++.+++++++++|.+++|+..++...+++++++.++..  .+.++.||+++.|++.+.++.+++++.+.+.
T Consensus        79 s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~~  156 (157)
T PF01210_consen   79 SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEEV  156 (157)
T ss_dssp             GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHHH
T ss_pred             HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEeccccc
Confidence            99999999999999999999999999998888889999999988863  3899999999999999999999999988764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=99.93  E-value=2.2e-24  Score=213.80  Aligned_cols=277  Identities=16%  Similarity=0.142  Sum_probs=196.2

Q ss_pred             hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC-CCCCCceEEeCCHHhhcCCCCEEEEcCccccHHHH
Q 012720          137 SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLGADYCLHAMPVQFSSSF  215 (458)
Q Consensus       137 ~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~-~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~v  215 (458)
                      +||+.+|..|+++|  ++|++++|+ ++.+.+++.|+......+ .... .+.+++++++ ...+|+||+|||+.+++++
T Consensus         1 aiG~~~a~~L~~~G--~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~-~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~   75 (293)
T TIGR00745         1 AVGSLYGAYLARAG--HDVTLLARG-EQLEALNQEGLRIVSLGGEFQFR-PVSAATSPEE-LPPADLVIITVKAYQTEEA   75 (293)
T ss_pred             CchHHHHHHHHhCC--CcEEEEecH-HHHHHHHHCCcEEEecCCcEEEc-ccccccChhh-cCCCCEEEEeccchhHHHH
Confidence            58999999999999  999999997 678889888865432222 1111 2345556666 6789999999999999999


Q ss_pred             HHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCEEEEECcccHHHHhccCCeEEEEccCC--HH
Q 012720          216 LEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMVVASKD--RK  287 (458)
Q Consensus       216 l~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~------~~~~vl~gP~~a~ei~~g~~t~v~i~g~d--~e  287 (458)
                      ++.+.+++.++++||+++||++..      +.+.+.++...      ...+...+|+...+.+.+.   +.++..+  .+
T Consensus        76 l~~l~~~l~~~~~iv~~qNG~g~~------~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~---~~iG~~~~~~~  146 (293)
T TIGR00745        76 AALLLPLIGKNTKVLFLQNGLGHE------ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGA---TKIGDYVGENE  146 (293)
T ss_pred             HHHhHhhcCCCCEEEEccCCCCCH------HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEecccc---EEEecCCCchH
Confidence            999999999999999999999874      33444443211      0112345666544333222   3344332  25


Q ss_pred             HHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC---Cc-HHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG---NN-SMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       288 ~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~---~n-~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      ..+.+.++|+..++++...+|+....|.|++.|+..++.+......++   .+ ....++..++.|+.+++++.|+++..
T Consensus       147 ~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~  226 (293)
T TIGR00745       147 AVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPD  226 (293)
T ss_pred             HHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            678899999999999999999999999999999755444444444333   33 36699999999999999999988543


Q ss_pred             cccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCC
Q 012720          364 ITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNEL  442 (458)
Q Consensus       364 ~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~  442 (458)
                      ..-    .+.+.........+ .+|-+|+.+|+++| +          ....|+++++|+++|+++|.++.+|++++..+
T Consensus       227 ~~~----~~~~~~~~~~~~~~~sSm~~D~~~gr~tE-i----------d~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~e  291 (293)
T TIGR00745       227 DEV----EELVRAVIRMTAENTSSMLQDLLRGRRTE-I----------DAINGAVVRLAEKLGIDAPVNRTLYALLKALE  291 (293)
T ss_pred             HHH----HHHHHHHHhcCCCCCChHHHHHHcCCcch-H----------HHhccHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence            210    01111111111223 25667888887765 3          36679999999999999999999999997654

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.93  E-value=2.3e-24  Score=214.09  Aligned_cols=269  Identities=16%  Similarity=0.163  Sum_probs=194.0

Q ss_pred             EECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-c
Q 012720          132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-Q  210 (458)
Q Consensus       132 IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~  210 (458)
                      |||+|.||.+||.+|+++|  ++|++|+|++++++.+.+.|              +..++++.++++++|+||+|||. .
T Consensus         1 ~IGlG~mG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advVil~vp~~~   64 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAG--HPVRVFDLFPDAVEEAVAAG--------------AQAAASPAEAAEGADRVITMLPAGQ   64 (288)
T ss_pred             CCcccHhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEeCCChH
Confidence            6899999999999999999  99999999999998888754              23456888889999999999997 6


Q ss_pred             cHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012720          211 FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK  287 (458)
Q Consensus       211 ~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e  287 (458)
                      ++++++   +++.+.+++++++|+++ ++.+++.+.+.+.+.+. |.     .++.+|...........+..++.+++++
T Consensus        65 ~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~-g~-----~~vdaPv~Gg~~~a~~g~l~~~~gg~~~  137 (288)
T TIGR01692        65 HVISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAH-GA-----VFMDAPVSGGVGGARAGTLTFMVGGVAE  137 (288)
T ss_pred             HHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-CC-----cEEECCCCCCHHHHhhCcEEEEECCCHH
Confidence            688888   67888888999999999 89988777777777653 42     3566666554333333344566677889


Q ss_pred             HHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccc
Q 012720          288 LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL  367 (458)
Q Consensus       288 ~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~  367 (458)
                      .+++++++|+..+.++.+.++.                 |....+|+.+|.+......++.|+..++++.|++++.+.++
T Consensus       138 ~~~~~~~~l~~~g~~~~~~g~~-----------------g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~  200 (288)
T TIGR01692       138 EFAAAEPVLGPMGRNIVHCGDH-----------------GAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEI  200 (288)
T ss_pred             HHHHHHHHHHHhcCCeEeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            9999999999988877776653                 33444667777777777889999999999999999988765


Q ss_pred             c--CCcch-hhhhccCCCcc---chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh--
Q 012720          368 S--GTGDI-MLTCFVNLSRN---RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID--  439 (458)
Q Consensus       368 ~--g~gd~-~~t~~~~~srn---~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~--  439 (458)
                      .  +.+.. .........+-   .....++..+++.+          ...||++++.++|++.|+++|+.+.+.+++.  
T Consensus       201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a  270 (288)
T TIGR01692       201 ANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTA----------LMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF  270 (288)
T ss_pred             HhcCCccCcHHHHhCCCccccccccccCCCCCCcchH----------HHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            2  11211 11100000000   00001111222332          3459999999999999999999999998884  


Q ss_pred             -----cCCCHHHHHHH
Q 012720          440 -----NELTPKKAVLE  450 (458)
Q Consensus       440 -----~~~~~~~~~~~  450 (458)
                           ++++...+++.
T Consensus       271 ~~~g~g~~d~~~~~~~  286 (288)
T TIGR01692       271 DDKGHGGKDFSSVIQL  286 (288)
T ss_pred             HhcCCCCCChHHHHHH
Confidence                 34455555543

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.92  E-value=1e-23  Score=210.03  Aligned_cols=275  Identities=17%  Similarity=0.186  Sum_probs=190.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|.||..+|..|++.|  ++|++|+|+++..+.+.+.|              +..+++++++++++|+||+|
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~~~~e~~~~~d~vi~~   65 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVYDRNPEAVAEVIAAG--------------AETASTAKAVAEQCDVIITM   65 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEEe
Confidence            579999999999999999999999  99999999998888877654              23456788888999999999


Q ss_pred             Ccc-ccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp~-~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      +|. ..++.++   .++.+.++++++|++++ ++.+.+.+.+.+.+.+. |     ..++..|.+..+.........++.
T Consensus        66 vp~~~~~~~v~~~~~~~~~~~~~g~iiid~s-t~~~~~~~~l~~~~~~~-g-----~~~~d~pv~g~~~~a~~g~l~i~~  138 (296)
T PRK11559         66 LPNSPHVKEVALGENGIIEGAKPGTVVIDMS-SIAPLASREIAAALKAK-G-----IEMLDAPVSGGEPKAIDGTLSVMV  138 (296)
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCcEEEECC-CCCHHHHHHHHHHHHHc-C-----CcEEEcCCCCCHHHHhhCcEEEEE
Confidence            995 5577776   44677788999999988 45665555555555442 3     235566655432211122233445


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~  362 (458)
                      +++++.++++.++|+..+.++.+.++..                 .+..+|+.+|.+......+++|+..++++.|++++
T Consensus       139 gg~~~~~~~~~~~l~~~~~~~~~~g~~g-----------------~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~  201 (296)
T PRK11559        139 GGDKAIFDKYYDLMKAMAGSVVHTGDIG-----------------AGNVTKLANQVIVALNIAAMSEALVLATKAGVNPD  201 (296)
T ss_pred             CCCHHHHHHHHHHHHHhcCCeEEeCCcC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            5678999999999999888777665542                 22334556666667777899999999999999998


Q ss_pred             cccccc--CCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHH--
Q 012720          363 TITGLS--GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARII--  438 (458)
Q Consensus       363 ~~~~~~--g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll--  438 (458)
                      .+.+..  +.+...  ...... .+.+..++..|++.+.          ..||+++++++|+++|+++|+.+.+++++  
T Consensus       202 ~~~~~l~~~~~~s~--~~~~~~-~~~~~~d~~~~f~~~~----------~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~  268 (296)
T PRK11559        202 LVYQAIRGGLAGST--VLDAKA-PMVMDRNFKPGFRIDL----------HIKDLANALDTSHGVGAPLPLTAAVMEMMQA  268 (296)
T ss_pred             HHHHHHhcCcccCH--HHHhhc-hHhhcCCCCCCcchHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            776542  111100  000000 0011122333444432          24899999999999999999999999888  


Q ss_pred             -----hcCCCHHHHHHHHhcC
Q 012720          439 -----DNELTPKKAVLELMSL  454 (458)
Q Consensus       439 -----~~~~~~~~~~~~l~~~  454 (458)
                           ....+...+++.+..+
T Consensus       269 ~~~~g~~~~d~~~~~~~~~~~  289 (296)
T PRK11559        269 LKADGLGTADHSALACYYEKL  289 (296)
T ss_pred             HHhcCCCcCCcHHHHHHHHHh
Confidence                 3456677777665443

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.92  E-value=4.9e-23  Score=214.46  Aligned_cols=282  Identities=21%  Similarity=0.209  Sum_probs=204.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcCCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA  200 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~~a  200 (458)
                      |||+|||+|.||..+|..|+++|  |+|++||+++++++.+++ |..+.+.++..      + ...+.++++++++++++
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G--~~V~~~d~~~~~v~~l~~-g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~a   77 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLG--HEVTGVDIDQEKVDKLNK-GKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDA   77 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcC--CeEEEEECCHHHHHHhhc-CCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhC
Confidence            58999999999999999999999  999999999999998875 44444444322      1 12367788888888999


Q ss_pred             CEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHH-HHHHHhCCC-CCCEEEEECcccH
Q 012720          201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQ-IIPQALRNP-RQPFIALSGPSFA  268 (458)
Q Consensus       201 DiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e-~l~~~lg~~-~~~~~vl~gP~~a  268 (458)
                      |+||+|||+.          ++.++++++.+.++++++||..+ ++.+++.+.+.+ .+++..|.. ...+.+.++|.++
T Consensus        78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~  156 (411)
T TIGR03026        78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL  156 (411)
T ss_pred             CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC
Confidence            9999999965          37888888988899999999887 898887766654 333322321 2456789999887


Q ss_pred             HHHhc----cCCeEEEEccCCHHHHHHHHHHHhcCC-CeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 012720          269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV  343 (458)
Q Consensus       269 ~ei~~----g~~t~v~i~g~d~e~~e~l~~lL~~~g-~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~  343 (458)
                      .+...    ..+..++.+ .+++.+++++++|+..+ ..+++..++..++..|++.|                 .+.++.
T Consensus       157 ~~G~~~~~~~~~~~iv~G-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N-----------------~~~a~~  218 (411)
T TIGR03026       157 REGNAVHDLLNPDRIVGG-ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAEN-----------------TFRAVK  218 (411)
T ss_pred             CCCChhhhhcCCCEEEEe-CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHH-----------------HHHHHH
Confidence            64321    223344444 68999999999999876 46677778777666665555                 445666


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHH
Q 012720          344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK  423 (458)
Q Consensus       344 ~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~  423 (458)
                      ...++|+..+|+++|+|++++.+..+....+      ..+.+..|+-++ |.+.             .||++++++.|++
T Consensus       219 ia~~nE~~~la~~~GiD~~~v~~~~~~~~~i------~~~~~~pg~g~g-g~c~-------------~KD~~~l~~~a~~  278 (411)
T TIGR03026       219 IAFANELARICEALGIDVYEVIEAAGTDPRI------GFNFLNPGPGVG-GHCI-------------PKDPLALIYKAKE  278 (411)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhCCCCCC------CCCcCCCCCCCC-CCch-------------hhhHHHHHHHHHh
Confidence            7789999999999999999887754332111      011222222111 1121             3899999999999


Q ss_pred             cCCCCcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720          424 YNVKMPVLTAVARIIDNELTPKKAVLELMS  453 (458)
Q Consensus       424 ~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~  453 (458)
                      +|+++|+.+++.++  +...+.-+++.+.+
T Consensus       279 ~g~~~~l~~~~~~~--N~~~~~~~~~~~~~  306 (411)
T TIGR03026       279 LGYNPELIEAAREI--NDSQPDYVVEKILD  306 (411)
T ss_pred             cCCCcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence            99999999999888  66677777766654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.91  E-value=3.2e-23  Score=206.17  Aligned_cols=271  Identities=17%  Similarity=0.208  Sum_probs=190.4

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp  208 (458)
                      ||+|||+|.||..||.+|+++|  ++|++|+|++++++.+.+.|.              ...++++++++++|+||+|+|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G--~~V~~~dr~~~~~~~~~~~g~--------------~~~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAG--YQLHVTTIGPEVADELLAAGA--------------VTAETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCCC--------------cccCCHHHHHhcCCEEEEecC
Confidence            5999999999999999999999  999999999999888876542              233477788899999999999


Q ss_pred             cc-cHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720          209 VQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (458)
Q Consensus       209 ~~-~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~  284 (458)
                      .. .++.++   ..+.+.++++++||+++ ++.+.+.+.+.+.+.+. |     ..++.+|.+..+......+..++.++
T Consensus        65 ~~~~~~~v~~~~~~~~~~~~~g~iivd~s-t~~~~~~~~l~~~l~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~~gg  137 (291)
T TIGR01505        65 DSPQVEEVAFGENGIIEGAKPGKTLVDMS-SISPIESKRFAKAVKEK-G-----IDYLDAPVSGGEIGAIEGTLSIMVGG  137 (291)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-C-----CCEEecCCCCCHHHHhcCCEEEEecC
Confidence            74 577776   34667778899999988 45565555555555543 3     23566676654332222223345566


Q ss_pred             CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012720          285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI  364 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~  364 (458)
                      +++.+++++++|+..+.++++.+...                 .+..+|+.+|.+......+++|+..++++.|++++++
T Consensus       138 ~~~~~~~~~~ll~~lg~~~~~~g~~g-----------------~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~  200 (291)
T TIGR01505       138 DQAVFDRVKPLFEALGKNIVLVGGNG-----------------DGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRV  200 (291)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEeCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            88999999999999988777665532                 2233456667777788889999999999999999988


Q ss_pred             cccc--CCcchh-hhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh--
Q 012720          365 TGLS--GTGDIM-LTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID--  439 (458)
Q Consensus       365 ~~~~--g~gd~~-~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~--  439 (458)
                      .+..  +.+... .....    .+..+.++..+++..          ...||++++++++++.|+++|+.+.+.+++.  
T Consensus       201 ~~~l~~~~~~s~~~~~~~----~~~~~~~~~~~f~~~----------~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a  266 (291)
T TIGR01505       201 RQALRGGLAGSTVLEVKG----ERVIDRTFKPGFRID----------LHQKDLNLALDSAKAVGANLPNTATVQELFNTL  266 (291)
T ss_pred             HHHHhcCcccCHHHHhhC----hhhhcCCCCCCcchH----------HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence            7642  111100 00000    000111122233332          2359999999999999999999999988884  


Q ss_pred             -----cCCCHHHHHHHHhc
Q 012720          440 -----NELTPKKAVLELMS  453 (458)
Q Consensus       440 -----~~~~~~~~~~~l~~  453 (458)
                           .+++...+++.+..
T Consensus       267 ~~~g~~~~d~~~~~~~~~~  285 (291)
T TIGR01505       267 RANGGGQLDHSALVQALEL  285 (291)
T ss_pred             HhcCCCccChHHHHHHHHH
Confidence                 36777777776644

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.91  E-value=9.7e-23  Score=203.56  Aligned_cols=258  Identities=12%  Similarity=0.071  Sum_probs=183.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVi  204 (458)
                      |||+|||+|.||..||.+|.++|  ++|++|||++++++.+.+.|              +..+.++++++++   +|+||
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g--------------~~~~~s~~~~~~~~~~advVi   64 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDG--HEVVGYDVNQEAVDVAGKLG--------------ITARHSLEELVSKLEAPRTIW   64 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCC--------------CeecCCHHHHHHhCCCCCEEE
Confidence            58999999999999999999999  99999999999888887644              2345677777655   69999


Q ss_pred             EcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       205 laVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      +|+|.. .++++++++.+.++++++||+++ ++.+.+...+.+.+.+. |     +.++.+|..+......... .++.+
T Consensus        65 ~~vp~~~~~~~v~~~i~~~l~~g~ivid~s-t~~~~~~~~~~~~~~~~-g-----~~~vdapV~G~~~~a~~g~-~~~~g  136 (299)
T PRK12490         65 VMVPAGEVTESVIKDLYPLLSPGDIVVDGG-NSRYKDDLRRAEELAER-G-----IHYVDCGTSGGVWGLRNGY-CLMVG  136 (299)
T ss_pred             EEecCchHHHHHHHHHhccCCCCCEEEECC-CCCchhHHHHHHHHHHc-C-----CeEEeCCCCCCHHHHhcCC-eEEec
Confidence            999986 89999999988898999999998 46665555555555443 3     3456666665433222223 35566


Q ss_pred             CCHHHHHHHHHHHhcCCC---eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC--
Q 012720          284 KDRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG--  358 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~---~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~G--  358 (458)
                      ++++.+++++++|+..+.   ++++.+++                 |.+..+|+.+|.+......++.|+..++++.|  
T Consensus       137 G~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~  199 (299)
T PRK12490        137 GDKEIYDRLEPVFKALAPEGPGYVHAGPV-----------------GSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFD  199 (299)
T ss_pred             CCHHHHHHHHHHHHHhcCcCCcEEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            789999999999998876   56666653                 45566678888888889999999999999999  


Q ss_pred             CCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHH---HHHHHHHHHcCCCCcHHHHHH
Q 012720          359 AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTA---GAVIALAQKYNVKMPVLTAVA  435 (458)
Q Consensus       359 i~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~---g~v~~lA~~~gv~~P~~~~v~  435 (458)
                      +|++.++++...+....   +.....  ....+..+....       ......||.   +++++.|++.|+++|+...+.
T Consensus       200 ld~~~~~~~~~~~~~~~---s~~l~~--~~~~~~~~~~~~-------~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~  267 (299)
T PRK12490        200 FDVEDVARLWRNGSVIR---SWLLDL--TVKALAEDPKLA-------GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASL  267 (299)
T ss_pred             CCHHHHHHHHcCCcHHH---HHHHHH--HHHHHhhCCChh-------hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            99888876521110000   000000  111222221110       012345776   799999999999999999884


Q ss_pred             -HHH
Q 012720          436 -RII  438 (458)
Q Consensus       436 -~ll  438 (458)
                       .++
T Consensus       268 ~~~~  271 (299)
T PRK12490        268 FMRF  271 (299)
T ss_pred             HHHH
Confidence             444

>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1

Probab=99.90  E-value=1e-23  Score=188.69  Aligned_cols=145  Identities=48%  Similarity=0.776  Sum_probs=132.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc-ccccccCCcchhhhhccCCCccc
Q 012720          307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA-TITGLSGTGDIMLTCFVNLSRNR  385 (458)
Q Consensus       307 ~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~-~~~~~~g~gd~~~t~~~~~srn~  385 (458)
                      +|+.|+|+++++||++|+++|+.++++++.|...+++.+++.|+.++++++|.+++ ++++++|+||+++||++..+||+
T Consensus         1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~   80 (149)
T PF07479_consen    1 SDVVGVELCGALKNIYAIAAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNR   80 (149)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcH
Confidence            58999999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             hHHHHhhCC-CChHHHHhhc--cccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 012720          386 TVGVRLGSG-EKLDDILSSM--NQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLEL  451 (458)
Q Consensus       386 ~~g~~l~~g-~~~e~~~~~~--~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l  451 (458)
                      ++|..+.+| .+.+++.+++  ++++||...++.+.++++++++++|+++++|+++.++.+|++++++|
T Consensus        81 ~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~~~~~~~~i~~l  149 (149)
T PF07479_consen   81 RFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYENESPEEAIEEL  149 (149)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS---HHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcCcCCHHHHHHcC
Confidence            999999999 8998888887  89999999999999999999999999999999999999999999876

1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.90  E-value=7.7e-23  Score=215.11  Aligned_cols=263  Identities=12%  Similarity=0.078  Sum_probs=185.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiV  203 (458)
                      +++|+|||+|.||..||.+|+++|  ++|++|||++++++.+.+.+...    +.   ..+..+.+++|+++.   +|+|
T Consensus         6 ~~~IG~IGLG~MG~~mA~nL~~~G--~~V~V~NRt~~k~~~l~~~~~~~----Ga---~~~~~a~s~~e~v~~l~~~dvI   76 (493)
T PLN02350          6 LSRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE----GN---LPLYGFKDPEDFVLSIQKPRSV   76 (493)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhhhc----CC---cccccCCCHHHHHhcCCCCCEE
Confidence            568999999999999999999999  99999999999999887641100    00   012345678887765   9999


Q ss_pred             EEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       204 ilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |+|||. .++++++.++.+.+.+|++||++++ +.+.+.+...+.+.+. |     +.++..|..+.+.+..... .++.
T Consensus        77 i~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~-G-----i~fldapVSGG~~gA~~G~-~im~  148 (493)
T PLN02350         77 IILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEK-G-----LLYLGMGVSGGEEGARNGP-SLMP  148 (493)
T ss_pred             EEECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCcCCHHHhcCCC-eEEe
Confidence            999996 5799999999999999999999995 5555455555555543 4     3466666665443322223 3566


Q ss_pred             cCCHHHHHHHHHHHhcCCCe------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH
Q 012720          283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK  356 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~------v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a  356 (458)
                      |++++.+++++++|+..+-+      +.+.++.                 |.+..+|+.+|.+.....++++|++.++++
T Consensus       149 GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~-----------------GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~  211 (493)
T PLN02350        149 GGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPG-----------------GAGNFVKMVHNGIEYGDMQLISEAYDVLKS  211 (493)
T ss_pred             cCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77899999999999987643      5555553                 455667788888888999999999999999


Q ss_pred             -cCCCcccccccc-----CCcchhhhhccCCCccchHHHHhh-C-----CCChHHHHhhccccchhhhHHH------HHH
Q 012720          357 -MGAKPATITGLS-----GTGDIMLTCFVNLSRNRTVGVRLG-S-----GEKLDDILSSMNQVAEGVSTAG------AVI  418 (458)
Q Consensus       357 -~Gi~~~~~~~~~-----g~gd~~~t~~~~~srn~~~g~~l~-~-----g~~~e~~~~~~~~~~eg~kd~g------~v~  418 (458)
                       .|++++.+.++.     +.+....      ...  .+..+. +     ++.++          ...||++      ..+
T Consensus       212 ~~Gld~~~l~~vf~~~~~g~~~S~l------lei--~~~~l~~~d~~~~~f~l~----------~i~Kd~~~kGTg~w~~  273 (493)
T PLN02350        212 VGGLSNEELAEVFAEWNKGELESFL------IEI--TADIFSVKDDKGDGYLVD----------KILDKTGMKGTGKWTV  273 (493)
T ss_pred             hCCCCHHHHHHHHHHHcCCCccchH------HHH--HHHHHhhcCCCCCCchHH----------HHHhhhcccchHHHHH
Confidence             599988877641     1111100      000  011111 1     12222          2347788      899


Q ss_pred             HHHHHcCCCCcH-HHHHHHHHhcC
Q 012720          419 ALAQKYNVKMPV-LTAVARIIDNE  441 (458)
Q Consensus       419 ~lA~~~gv~~P~-~~~v~~ll~~~  441 (458)
                      +.|.++|+++|+ .+++.+.+...
T Consensus       274 ~~A~~lgv~~p~i~~av~~r~~s~  297 (493)
T PLN02350        274 QQAAELSVAAPTIAASLDARYLSG  297 (493)
T ss_pred             HHHHHhCCCccHHHHHHHHHHHhc
Confidence            999999999999 77777666443

>PLN02858 fructose-bisphosphate aldolase

Probab=99.90  E-value=7.6e-23  Score=237.63  Aligned_cols=274  Identities=14%  Similarity=0.124  Sum_probs=203.4

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..+||||||+|.||..||.+|.++|  |+|++|||++++++.+.+.|              +..++++.|++++||+||+
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~G--------------a~~~~s~~e~a~~advVi~   66 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSG--FKVQAFEISTPLMEKFCELG--------------GHRCDSPAEAAKDAAALVV   66 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEE
Confidence            3578999999999999999999999  99999999999999998765              3456789999999999999


Q ss_pred             cCcc-ccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012720          206 AMPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (458)
Q Consensus       206 aVp~-~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i  281 (458)
                      |+|. .++++++   .++.+.+.+|+++|+++ ++.+++.+.+++.+.+. |.   .+.++.+|..+........+..++
T Consensus        67 ~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~S-Ti~p~~~~~la~~l~~~-g~---~~~~lDaPVsGg~~~A~~G~L~im  141 (1378)
T PLN02858         67 VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRS-TILPLQLQKLEKKLTER-KE---QIFLVDAYVSKGMSDLLNGKLMII  141 (1378)
T ss_pred             EcCChHHHHHHHhchhhHHhcCCCcCEEEECC-CCCHHHHHHHHHHHHhc-CC---ceEEEEccCcCCHHHHhcCCeEEE
Confidence            9996 5688887   45777788999999999 78888777777777654 41   134666666654333333445567


Q ss_pred             ccCCHHHHHHHHHHHhcCCCeEEE-cCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720          282 ASKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       282 ~g~d~e~~e~l~~lL~~~g~~v~~-~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      .|++++.+++++++|+..+.++++ .++.                 |.+..+|+.+|.+......++.|++.+|++.|++
T Consensus       142 vGG~~~~~~~~~p~l~~~g~~i~~~~G~~-----------------G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld  204 (1378)
T PLN02858        142 ASGRSDAITRAQPFLSAMCQKLYTFEGEI-----------------GAGSKVKMVNELLEGIHLVASAEAMALGVRAGIH  204 (1378)
T ss_pred             EcCCHHHHHHHHHHHHHhcCceEEecCCC-----------------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            788999999999999998877764 3543                 5556677888888888899999999999999999


Q ss_pred             cccccccc--CCcch-hhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          361 PATITGLS--GTGDI-MLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       361 ~~~~~~~~--g~gd~-~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      ++.++++.  +.+.. +.....+    +....++..+++++          ...||+++++++|++.|+++|+.+.++++
T Consensus       205 ~~~l~~vl~~s~g~s~~~~~~~~----~~~~~d~~~~F~l~----------l~~KDl~la~~~A~~~g~~lpl~~~a~~~  270 (1378)
T PLN02858        205 PWIIYDIISNAAGSSWIFKNHVP----LLLKDDYIEGRFLN----------VLVQNLGIVLDMAKSLPFPLPLLAVAHQQ  270 (1378)
T ss_pred             HHHHHHHHhcCCccCHHHHhhhh----HhhcCCCCCCchhH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            99988752  22221 1100000    00001111223332          24599999999999999999999999988


Q ss_pred             Hhc-------CCCHHHHHHHH
Q 012720          438 IDN-------ELTPKKAVLEL  451 (458)
Q Consensus       438 l~~-------~~~~~~~~~~l  451 (458)
                      +..       ..+...+++.+
T Consensus       271 ~~~a~~~G~g~~D~sav~~~~  291 (1378)
T PLN02858        271 LISGSSSMQGDDTATSLAKVW  291 (1378)
T ss_pred             HHHHHhcCCCccChHHHHHHH
Confidence            843       44555555544

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.89  E-value=1.4e-21  Score=195.39  Aligned_cols=275  Identities=13%  Similarity=0.118  Sum_probs=185.2

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVi  204 (458)
                      |||+|||+|.||..||.+|+++|  ++|++|||++++++.+.+.|              +..+++++++++.   +|+||
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g--~~v~v~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~~~~~dvvi   64 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGG--HEVVGYDRNPEAVEALAEEG--------------ATGADSLEELVAKLPAPRVVW   64 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCC--------------CeecCCHHHHHhhcCCCCEEE
Confidence            58999999999999999999999  99999999999988887654              3455677776654   69999


Q ss_pred             EcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       205 laVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      +|+|.. ++++++.++.+.+++++++|++++ ..+.+.+.+.+.+.+. |     +.++..|..+......... .++.+
T Consensus        65 ~~v~~~~~~~~v~~~l~~~l~~g~ivid~st-~~~~~~~~~~~~~~~~-g-----~~~~dapvsG~~~~a~~g~-~~~~g  136 (301)
T PRK09599         65 LMVPAGEITDATIDELAPLLSPGDIVIDGGN-SYYKDDIRRAELLAEK-G-----IHFVDVGTSGGVWGLERGY-CLMIG  136 (301)
T ss_pred             EEecCCcHHHHHHHHHHhhCCCCCEEEeCCC-CChhHHHHHHHHHHHc-C-----CEEEeCCCCcCHHHHhcCC-eEEec
Confidence            999986 789999999888999999999985 4444444555555443 3     3455666655432221222 34566


Q ss_pred             CCHHHHHHHHHHHhcCCC----eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH--c
Q 012720          284 KDRKLANAVQQLLASKHL----RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK--M  357 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~----~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a--~  357 (458)
                      ++++.+++++++|+..+-    ++.+.+++                 |.+..+|+.+|.+......++.|+..++++  .
T Consensus       137 G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~-----------------G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~  199 (301)
T PRK09599        137 GDKEAVERLEPIFKALAPRAEDGYLHAGPV-----------------GAGHFVKMVHNGIEYGMMQAYAEGFELLEASRF  199 (301)
T ss_pred             CCHHHHHHHHHHHHHHcccccCCeEeECCC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            789999999999998876    66776664                 344455667777777888999999999999  9


Q ss_pred             CCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHH-HHH
Q 012720          358 GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA-VAR  436 (458)
Q Consensus       358 Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~-v~~  436 (458)
                      |+|+++++++...+...   .+....  .....+.+......+..   ...+ .+|.+.+++.|.+.|+++|.+.. ++.
T Consensus       200 gld~~~~~~~~~~~~~~---~s~~l~--~~~~~~~~~~~~~~~~~---~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~  270 (301)
T PRK09599        200 DLDLAAVAEVWRRGSVI---RSWLLD--LTADALAEDPKLDEISG---YVED-SGEGRWTVEEAIDLAVPAPVIAAALFM  270 (301)
T ss_pred             CCCHHHHHHHHhCCcHH---HHHHHH--HHHHHHhcCCCHHHHHH---HHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99998887642111000   000000  01122221111111100   0111 35568999999999999999998 444


Q ss_pred             HH---hcCCCHHHHHHHHh
Q 012720          437 II---DNELTPKKAVLELM  452 (458)
Q Consensus       437 ll---~~~~~~~~~~~~l~  452 (458)
                      .+   .....+...+..++
T Consensus       271 ~~~~~~~~~~~~~~~~a~~  289 (301)
T PRK09599        271 RFRSRQEDSFADKVVAALR  289 (301)
T ss_pred             HHHhccCCCcHHHHHHHHH
Confidence            23   23344444444443

>PLN02858 fructose-bisphosphate aldolase

Probab=99.88  E-value=1.2e-21  Score=227.57  Aligned_cols=274  Identities=12%  Similarity=0.119  Sum_probs=198.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +++|+|||+|+||.+||.+|+++|  ++|++|||++++++.+.+.|.              ....++.++++++|+||+|
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~Ga--------------~~~~s~~e~~~~aDvVi~~  387 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSN--FSVCGYDVYKPTLVRFENAGG--------------LAGNSPAEVAKDVDVLVIM  387 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eecCCHHHHHhcCCEEEEe
Confidence            468999999999999999999999  999999999999888877542              2346888888999999999


Q ss_pred             Cc-cccHHHHHH---hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MP-VQFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp-~~~v~~vl~---~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      || +.++++++.   ++.+.+.+|+++|+++ ++.+++.+.+.+.+.+. +   ..+.++.+|..+........+..++.
T Consensus       388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~S-TvsP~~~~~la~~l~~~-g---~g~~~lDAPVsGg~~~A~~G~L~imv  462 (1378)
T PLN02858        388 VANEVQAENVLFGDLGAVSALPAGASIVLSS-TVSPGFVIQLERRLENE-G---RDIKLVDAPVSGGVKRAAMGTLTIMA  462 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCCCEEEECC-CCCHHHHHHHHHHHHhh-C---CCcEEEEccCCCChhhhhcCCceEEE
Confidence            99 567888873   4667788899999998 68888777777776653 2   12456777766543333333444566


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEE-cCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720          283 SKDRKLANAVQQLLASKHLRIST-SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~-~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~  361 (458)
                      +++++.+++++++|+..+.++++ .+++                 |.+..+|+.+|.+......+++|++.++++.|+++
T Consensus       463 gG~~~~~~~~~plL~~lg~~i~~~~g~~-----------------G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~  525 (1378)
T PLN02858        463 SGTDEALKSAGSVLSALSEKLYVIKGGC-----------------GAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNT  525 (1378)
T ss_pred             ECCHHHHHHHHHHHHHHhCcEEEeCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            67899999999999998877765 4454                 44555677778888888899999999999999999


Q ss_pred             ccccccc--CCcchh-hhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 012720          362 ATITGLS--GTGDIM-LTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARII  438 (458)
Q Consensus       362 ~~~~~~~--g~gd~~-~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll  438 (458)
                      +.++++.  +.+... .....+    +....++..+++++          ...||++++++++++.|+++|+.+.+.+++
T Consensus       526 ~~l~evl~~s~g~s~~~~~~~~----~~l~~d~~~~f~l~----------l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~  591 (1378)
T PLN02858        526 RKLFDIISNAGGTSWMFENRVP----HMLDNDYTPYSALD----------IFVKDLGIVSREGSSRKIPLHLSTVAHQLF  591 (1378)
T ss_pred             HHHHHHHHhhcccChhhhhccc----hhhcCCCCCCchhH----------HHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            9888752  222111 000000    00001111123332          245999999999999999999999998888


Q ss_pred             h-------cCCCHHHHHHHHh
Q 012720          439 D-------NELTPKKAVLELM  452 (458)
Q Consensus       439 ~-------~~~~~~~~~~~l~  452 (458)
                      .       .+.+...+++.+.
T Consensus       592 ~~a~~~G~g~~D~sav~~~~~  612 (1378)
T PLN02858        592 LAGSASGWGRIDDAAVVKVYE  612 (1378)
T ss_pred             HHHHhcCCCccChHHHHHHHH
Confidence            3       3455555655443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.85  E-value=1.1e-19  Score=181.35  Aligned_cols=273  Identities=10%  Similarity=0.078  Sum_probs=179.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---hcCCCCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a~~~aDiVi  204 (458)
                      |||+|||+|.||..||.+|+++|  ++|.+|+|++++++.+.+.+..              ...++++   .+..+|+||
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g--~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~~~~~~~~~~dvIi   64 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRG--HDCVGYDHDQDAVKAMKEDRTT--------------GVANLRELSQRLSAPRVVW   64 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCc--------------ccCCHHHHHhhcCCCCEEE
Confidence            58999999999999999999999  9999999999999998876532              1224443   346789999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~  284 (458)
                      +|||+..++++++++.+.++++++||+++++...++ ....+.+.+. |     +.++..|..+...+..... .++.++
T Consensus        65 ~~vp~~~~~~v~~~l~~~l~~g~ivid~st~~~~~t-~~~~~~~~~~-g-----~~~vda~vsGg~~~a~~G~-~~~~gG  136 (298)
T TIGR00872        65 VMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDS-LRRYKLLKEK-G-----IHLLDCGTSGGVWGRERGY-CFMIGG  136 (298)
T ss_pred             EEcCchHHHHHHHHHHhhCCCCCEEEECCCCCcccH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCC-eeeeCC
Confidence            999988999999999999999999999997655443 3333344332 3     2355555544322221222 345666


Q ss_pred             CHHHHHHHHHHHhcCCC---eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC--C
Q 012720          285 DRKLANAVQQLLASKHL---RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG--A  359 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~---~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~G--i  359 (458)
                      +++.+++++++|+..+-   .+.+.++.                 |....+|+.+|.+......+++|+..++++.|  +
T Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~~G~~-----------------G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~l  199 (298)
T TIGR00872       137 DGEAFARAEPLFADVAPEEQGYLYCGPC-----------------GSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDF  199 (298)
T ss_pred             CHHHHHHHHHHHHHhcCcCCCEEEECCc-----------------cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            89999999999997664   35555553                 33344556667777778899999999999984  6


Q ss_pred             CccccccccCCcchhhhhccCCCccchH---HHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720          360 KPATITGLSGTGDIMLTCFVNLSRNRTV---GVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR  436 (458)
Q Consensus       360 ~~~~~~~~~g~gd~~~t~~~~~srn~~~---g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~  436 (458)
                      +++++.++-..+..+        +.+-+   ...+.++..+..+..    .+...++.+.++..|.+.|+++|.+.....
T Consensus       200 d~~~~~~i~~~g~~~--------~s~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~~v~~a~~~g~p~P~~~~al~  267 (298)
T TIGR00872       200 DIPEVARVWRRGSVI--------RSWLLDLTAIAFRESPDLAEFSG----RVSDSGEGRWTVIAAIDLGVPAPVIATSLQ  267 (298)
T ss_pred             CHHHHHHHHcCCchh--------HhHHHHHHHHHHhcCCcHHHHHH----HHHhhccHHHHHHHHHHhCCCHHHHHHHHH
Confidence            887776541111100        11100   111222211222221    111235568899999999999999976432


Q ss_pred             -H--HhcC-CCHHHHHHHHhc
Q 012720          437 -I--IDNE-LTPKKAVLELMS  453 (458)
Q Consensus       437 -l--l~~~-~~~~~~~~~l~~  453 (458)
                       .  ...+ .-|..+++.+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~r~  288 (298)
T TIGR00872       268 SRFASRDLDDFANKVLAALRK  288 (298)
T ss_pred             HHHHhCCCCCcHHHHHHHHHH
Confidence             1  1222 346667766654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.85  E-value=2.2e-19  Score=179.87  Aligned_cols=276  Identities=21%  Similarity=0.243  Sum_probs=210.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLGA  200 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~a  200 (458)
                      |||+|||+|.+|...|..|++.|  |+|+.+|.++++++.|++ |.-+.|.|++.       ...++++++|.+++++++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~-g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~a   77 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNK-GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDA   77 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhC-CCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcC
Confidence            79999999999999999999999  999999999999999987 66788888753       123489999999999999


Q ss_pred             CEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720          201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (458)
Q Consensus       201 DiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e  270 (458)
                      |++|+||++.          ++++++++|.++++..++||.=| ++.+++.+.+.+.+.+....  ..+.+.+.|.|-+|
T Consensus        78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS-TVPvGt~~~v~~~i~~~~~~--~~f~v~~NPEFLRE  154 (414)
T COG1004          78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS-TVPVGTTEEVRAKIREENSG--KDFEVASNPEFLRE  154 (414)
T ss_pred             CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC-CCCCCchHHHHHHHHhhccc--CCceEecChHHhcC
Confidence            9999999863          47888899999998766666555 78888887777777665432  25778999998876


Q ss_pred             Hh----ccCCeEEEEccCCHHHHHHHHHHHhcC---CCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 012720          271 LM----NKLPTAMVVASKDRKLANAVQQLLASK---HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALV  343 (458)
Q Consensus       271 i~----~g~~t~v~i~g~d~e~~e~l~~lL~~~---g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~  343 (458)
                      ..    .-.|..+++|..++...+.+++++...   ..++.. .|+..+|.-                 ||..|.+.++-
T Consensus       155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~-t~~~~AE~I-----------------KyaaNafLAtK  216 (414)
T COG1004         155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILF-TDLREAELI-----------------KYAANAFLATK  216 (414)
T ss_pred             cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEE-ecchHHHHH-----------------HHHHHHHHHHH
Confidence            32    135677888887777778888888653   445444 345555543                 45667777888


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHH-----hhCCCChHHHHhhccccchhhhHHHHHH
Q 012720          344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVR-----LGSGEKLDDILSSMNQVAEGVSTAGAVI  418 (458)
Q Consensus       344 ~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~-----l~~g~~~e~~~~~~~~~~eg~kd~g~v~  418 (458)
                      ..-++|+..+|++.|+|..++.+..|.-+             +.|..     ++.|.++  +          .||+++++
T Consensus       217 IsFiNEia~ice~~g~D~~~V~~gIGlD~-------------RIG~~fl~aG~GyGGsC--f----------PKD~~AL~  271 (414)
T COG1004         217 ISFINEIANICEKVGADVKQVAEGIGLDP-------------RIGNHFLNAGFGYGGSC--F----------PKDTKALI  271 (414)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHcCCCc-------------hhhHhhCCCCCCCCCcC--C----------cHhHHHHH
Confidence            88999999999999999877765333322             22222     1223333  1          48999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHHhcC
Q 012720          419 ALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL  454 (458)
Q Consensus       419 ~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~  454 (458)
                      ..|+++|.+.++++++.+.  +..+++.+++.+.++
T Consensus       272 ~~a~~~~~~~~ll~avv~v--N~~qk~~~~~~i~~~  305 (414)
T COG1004         272 ANAEELGYDPNLLEAVVEV--NERRKDKLAEKILNH  305 (414)
T ss_pred             HHHHhcCCchHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence            9999999999999999887  666777777776654

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.84  E-value=1e-19  Score=191.24  Aligned_cols=206  Identities=12%  Similarity=0.082  Sum_probs=155.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC---CCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~---~aDiV  203 (458)
                      |++|+|||+|.||+.||.+|+++|  |+|++|+|++++++.+.+.+.+..        ..+..+++++++++   ++|+|
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G--~~V~v~dr~~~~~~~l~~~~~~~g--------~~i~~~~s~~e~v~~l~~~d~I   70 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRG--FKISVYNRTYEKTEEFVKKAKEGN--------TRVKGYHTLEELVNSLKKPRKV   70 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhhhhcC--------CcceecCCHHHHHhcCCCCCEE
Confidence            458999999999999999999999  999999999999998876532211        02445678888775   58999


Q ss_pred             EEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       204 ilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |++|++ .+++++++++.+++.++++||+++|+...++.+. .+.+.+. |     +.++..|..+.+.+...... ++.
T Consensus        71 il~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r-~~~l~~~-G-----i~fldapVSGG~~gA~~G~~-lm~  142 (470)
T PTZ00142         71 ILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERR-IKRCEEK-G-----ILYLGMGVSGGEEGARYGPS-LMP  142 (470)
T ss_pred             EEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHH-HHHHHHc-C-----CeEEcCCCCCCHHHHhcCCE-EEE
Confidence            999875 6799999999999999999999998877665433 3334332 4     34556665554433222233 556


Q ss_pred             cCCHHHHHHHHHHHhcCCCe------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-
Q 012720          283 SKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-  355 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~------v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~-  355 (458)
                      |++++.+++++++|+..+-+      +.+.++.                 |.+.-+|+.+|.+.....++++|+..+++ 
T Consensus       143 GG~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~-----------------GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~  205 (470)
T PTZ00142        143 GGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPG-----------------SSGHYVKMVHNGIEYGDMQLISESYKLMKH  205 (470)
T ss_pred             eCCHHHHHHHHHHHHHHhhhcCCCCeEEEECCC-----------------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            66899999999999987665      4444442                 45556677888888888999999999998 


Q ss_pred             HcCCCccccccc
Q 012720          356 KMGAKPATITGL  367 (458)
Q Consensus       356 a~Gi~~~~~~~~  367 (458)
                      +.|++++++.++
T Consensus       206 ~~gl~~~~l~~v  217 (470)
T PTZ00142        206 ILGMSNEELSEV  217 (470)
T ss_pred             hcCCCHHHHHHH
Confidence            799998887654

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.83  E-value=3.9e-19  Score=185.15  Aligned_cols=274  Identities=14%  Similarity=0.101  Sum_probs=183.8

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALL  198 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~  198 (458)
                      .+|||+|||+|.||..||..|+++|  |+|++||+++++++.++... ...+.++..      . .....++++    .+
T Consensus         2 ~~~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~-~~~~e~~l~~~l~~~~~~g~l~~~~~----~~   74 (415)
T PRK11064          2 SFETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGE-IHIVEPDLDMVVKTAVEGGYLRATTT----PE   74 (415)
T ss_pred             CccEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCC-CCcCCCCHHHHHHHHhhcCceeeecc----cc
Confidence            4689999999999999999999999  99999999999999876533 222322221      0 112334433    34


Q ss_pred             CCCEEEEcCcc----------ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--------CCCCEE
Q 012720          199 GADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--------PRQPFI  260 (458)
Q Consensus       199 ~aDiVilaVp~----------~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~--------~~~~~~  260 (458)
                      ++|+||+|||.          .++.++++++.++++++++||..+ ++.+.+.+.+...+.+....        ....+.
T Consensus        75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S-Tv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~  153 (415)
T PRK11064         75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES-TSPVGATEQMAEWLAEARPDLTFPQQAGEQADIN  153 (415)
T ss_pred             cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC-CCCCCHHHHHHHHHHHhccCCcccccccCCCCeE
Confidence            79999999997          478888889999999999999888 78888877777766654111        012345


Q ss_pred             EEECcccHHHH---h-ccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012720          261 ALSGPSFALEL---M-NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN  336 (458)
Q Consensus       261 vl~gP~~a~ei---~-~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~  336 (458)
                      +.+.|.+..+.   . .+.+..+ +++.+++.+++++++|+..+-.+....++..+                 +..|+.+
T Consensus       154 v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~A-----------------e~~Kl~~  215 (415)
T PRK11064        154 IAYCPERVLPGQVMVELIKNDRV-IGGMTPVCSARASELYKIFLEGECVVTNSRTA-----------------EMCKLTE  215 (415)
T ss_pred             EEECCCccCCCChhhhhcCCCEE-EEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHH-----------------HHHHHHH
Confidence            67788554321   1 1334443 46658899999999999876555455555444                 4445667


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHH
Q 012720          337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGA  416 (458)
Q Consensus       337 n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~  416 (458)
                      |.+.++....++|+..+|+++|+|++.+.+..+....+        ....+|.-+ -|.++.             ||..+
T Consensus       216 N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~ri--------~~l~pG~G~-GG~Clp-------------kD~~~  273 (415)
T PRK11064        216 NSFRDVNIAFANELSLICADQGINVWELIRLANRHPRV--------NILQPGPGV-GGHCIA-------------VDPWF  273 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCc--------ccCCCCCCC-CCcccc-------------ccHHH
Confidence            78888889999999999999999988877543221111        001112111 133332             55555


Q ss_pred             HHHHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 012720          417 VIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELM  452 (458)
Q Consensus       417 v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~  452 (458)
                      +   .++++...++.+++.++  ++..|.-+++++.
T Consensus       274 L---~~~~~~~~~l~~~a~~~--N~~~~~~v~~~~~  304 (415)
T PRK11064        274 I---VAQNPQQARLIRTAREV--NDGKPHWVIDQVK  304 (415)
T ss_pred             H---HHhcCCccHHHHHHHHH--HHHhHHHHHHHHH
Confidence            4   34567778888888776  5556665555543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.83  E-value=6.8e-20  Score=167.13  Aligned_cols=155  Identities=20%  Similarity=0.228  Sum_probs=117.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||||+|||+|.||..||.+|.++|  ++|++|||++++++++.+.|              +...++++|+++.+|+||+|
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~g--------------~~~~~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEAG--------------AEVADSPAEAAEQADVVILC   64 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHTT--------------EEEESSHHHHHHHBSEEEE-
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHhh--------------hhhhhhhhhHhhcccceEee
Confidence            589999999999999999999999  99999999999999998865              56778999999999999999


Q ss_pred             Ccc-ccHHHHHHh--hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          207 MPV-QFSSSFLEG--ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       207 Vp~-~~v~~vl~~--i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      ||+ .++++++.+  +.+.+.+++++|+++ ++.+++.+.+.+.+.+. |     +.++.+|..............++.+
T Consensus        65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~-g-----~~~vdapV~Gg~~~a~~g~l~~~~g  137 (163)
T PF03446_consen   65 VPDDDAVEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAK-G-----VRYVDAPVSGGPPGAEEGTLTIMVG  137 (163)
T ss_dssp             SSSHHHHHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHT-T-----EEEEEEEEESHHHHHHHTTEEEEEE
T ss_pred             cccchhhhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhc-c-----ceeeeeeeecccccccccceEEEcc
Confidence            997 779999998  999999999999999 68887766666666553 3     3455555544322222223345666


Q ss_pred             CCHHHHHHHHHHHhcCCCeEE
Q 012720          284 KDRKLANAVQQLLASKHLRIS  304 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~  304 (458)
                      ++++.+++++++|+..+.+++
T Consensus       138 G~~~~~~~~~~~l~~~~~~v~  158 (163)
T PF03446_consen  138 GDEEAFERVRPLLEAMGKNVY  158 (163)
T ss_dssp             S-HHHHHHHHHHHHHHEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCce
Confidence            789999999999998877766

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.82  E-value=3.9e-19  Score=185.25  Aligned_cols=278  Identities=10%  Similarity=0.073  Sum_probs=189.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C--CCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L--PENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l--~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .|||+|||+|.||..||..|++ |  |+|++||+++++++.++ .|..+.+.++.. +  ...+.++++.+ +++++|++
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~--~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~advv   80 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-S--RQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIE-KIKECNFY   80 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-C--CEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCCEE
Confidence            4799999999999999999887 6  99999999999999999 454433332211 0  12345666665 57899999


Q ss_pred             EEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhH-HHHHHHHhCCCC-CCEEEEECcccHHHH
Q 012720          204 LHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM-SQIIPQALRNPR-QPFIALSGPSFALEL  271 (458)
Q Consensus       204 ilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l-~e~l~~~lg~~~-~~~~vl~gP~~a~ei  271 (458)
                      |+|||+.          ++....+.|.+++++|++||..| ++.+.+.+.+ ...+.+..|... ..+.+.+.|.+..+.
T Consensus        81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S-Tv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G  159 (425)
T PRK15182         81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES-TVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPG  159 (425)
T ss_pred             EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec-CCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCC
Confidence            9999964          34445567889999999999888 7888876643 344443223211 234455566554432


Q ss_pred             h----ccCCeEEEEccCCHHHHHHHHHHHhcCC-CeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHH
Q 012720          272 M----NKLPTAMVVASKDRKLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG  346 (458)
Q Consensus       272 ~----~g~~t~v~i~g~d~e~~e~l~~lL~~~g-~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~  346 (458)
                      .    .+.+..+ ++|.+++..+.++++++... .......+...                 ++..|+.+|.+.++....
T Consensus       160 ~a~~~~~~~~ri-v~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~-----------------AE~~Kl~~N~~~av~Ia~  221 (425)
T PRK15182        160 DKKHRLTNIKKI-TSGSTAQIAELIDEVYQQIISAGTYKAESIKV-----------------AEAAKVIENTQRDLNIAL  221 (425)
T ss_pred             cccccccCCCeE-EECCCHHHHHHHHHHHHHHhhcCcEEecCHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence            1    1233334 45567888888999988643 22344445443                 344556677888889999


Q ss_pred             HHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCC
Q 012720          347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV  426 (458)
Q Consensus       347 l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv  426 (458)
                      ++|+..+|+++|+|.+.+.+..+..        .....+.+|. ++ |.++.             ||..+++..++++|+
T Consensus       222 ~NE~a~lae~~GiD~~~v~~a~~~~--------~~~~~~~pG~-vG-G~Clp-------------kD~~~L~~~a~~~g~  278 (425)
T PRK15182        222 VNELAIIFNRLNIDTEAVLRAAGSK--------WNFLPFRPGL-VG-GHCIG-------------VDPYYLTHKSQGIGY  278 (425)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHhcCC--------CCcccCCCCc-cc-ccccc-------------ccHHHHHHHHHhcCC
Confidence            9999999999999998887653221        0001122333 22 44432             788899999999999


Q ss_pred             CCcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720          427 KMPVLTAVARIIDNELTPKKAVLELMS  453 (458)
Q Consensus       427 ~~P~~~~v~~ll~~~~~~~~~~~~l~~  453 (458)
                      .+++.+++.++  ++..|..+++++..
T Consensus       279 ~~~l~~~a~~i--N~~~~~~v~~~~~~  303 (425)
T PRK15182        279 YPEIILAGRRL--NDNMGNYVSEQLIK  303 (425)
T ss_pred             CcHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            99999999887  56777777766653

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.80  E-value=5.4e-18  Score=174.81  Aligned_cols=269  Identities=18%  Similarity=0.166  Sum_probs=178.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCceEEeCCHHhhcCCCCE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY  202 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-----l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |||+|||+|.||..+|..|+. |  |+|++||+++++++.+++ |....+.++..     ....+..+.+..++++++|+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G--~~VigvD~d~~kv~~l~~-g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~   76 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-N--HEVVALDILPSRVAMLND-RISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADY   76 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-C--CcEEEEECCHHHHHHHHc-CCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCE
Confidence            589999999999999988875 8  999999999999999886 33333333321     01234455667777899999


Q ss_pred             EEEcCccc-----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012720          203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL  271 (458)
Q Consensus       203 VilaVp~~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei  271 (458)
                      ||+|||..           +++++++++.. ++++++||..| ++.+++.+.+.+.+.+.        .+.++|.++.+.
T Consensus        77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S-Tv~pgtt~~l~~~~~~~--------~v~~~PE~l~~G  146 (388)
T PRK15057         77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS-TVPVGFTAAMHKKYRTE--------NIIFSPEFLREG  146 (388)
T ss_pred             EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee-ecCCchHHHHHHHhhcC--------cEEECcccccCC
Confidence            99999954           57778888877 68899888887 78888766655544321        244578766532


Q ss_pred             hc----cCCeEEEEccCCHHHHHHHHHHHhc--CCCeEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Q 012720          272 MN----KLPTAMVVASKDRKLANAVQQLLAS--KHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVA  344 (458)
Q Consensus       272 ~~----g~~t~v~i~g~d~e~~e~l~~lL~~--~g~~v~-~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~  344 (458)
                      -.    -.+..+++|+ +++.++++.++|..  .+-.+. +..++..+|.                 .|+.+|.+.++..
T Consensus       147 ~a~~d~~~p~rvv~G~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~a~~I  208 (388)
T PRK15057        147 KALYDNLHPSRIVIGE-RSERAERFAALLQEGAIKQNIPTLFTDSTEAEA-----------------IKLFANTYLAMRV  208 (388)
T ss_pred             cccccccCCCEEEEEc-CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHH-----------------HHHHHHHHHHHHH
Confidence            10    1233444454 55667888888854  221222 3455544444                 4566677888889


Q ss_pred             HHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHH
Q 012720          345 QGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQK  423 (458)
Q Consensus       345 ~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~  423 (458)
                      ..++|+..+|+++|+|.+.+.+..+....+       +..+ .+|.-+ -|.++.             ||..++...+  
T Consensus       209 a~~NE~a~lae~~GiD~~eV~~a~~~d~ri-------~~~~l~pG~G~-GG~Clp-------------kD~~~L~~~~--  265 (388)
T PRK15057        209 AYFNELDSYAESLGLNTRQIIEGVCLDPRI-------GNHYNNPSFGY-GGYCLP-------------KDTKQLLANY--  265 (388)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHhcCCCCC-------CCccCCCCCCC-CCcChh-------------hhHHHHHHhc--
Confidence            999999999999999988877643321111       0000 112212 133432             6666776554  


Q ss_pred             cCCCCcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720          424 YNVKMPVLTAVARIIDNELTPKKAVLELMS  453 (458)
Q Consensus       424 ~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~  453 (458)
                      .++++++++++.++  +...|.-+++++.+
T Consensus       266 ~~~~~~l~~~~~~~--N~~~~~~~~~~~~~  293 (388)
T PRK15057        266 QSVPNNLISAIVDA--NRTRKDFIADAILS  293 (388)
T ss_pred             cCCCcHHHHHHHHH--HHHhHHHHHHHHHH
Confidence            57888999998887  77778878777754

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.80  E-value=1.4e-17  Score=175.33  Aligned_cols=283  Identities=16%  Similarity=0.209  Sum_probs=196.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-C-----CCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-L-----PENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l-----~~~i~a~~~~~ea~~~a  200 (458)
                      ||||+|||+|.+|..+|..|+++|.+++|+++|.++++++.+++.+. ..+.++.. +     ...+.++++.+++++++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~-~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a   79 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL-PIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA   79 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC-ccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence            58999999999999999999998644889999999999999988653 22233321 1     22478889988889999


Q ss_pred             CEEEEcCccc---------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECc
Q 012720          201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP  265 (458)
Q Consensus       201 DiVilaVp~~---------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP  265 (458)
                      |++|+|||+.               .++++++.|.++++++++||.-| ++.+.+.+.+...+.+....  ..+.+.+.|
T Consensus        80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S-Tvp~Gtt~~~~~~l~~~~~g--~~f~v~~~P  156 (473)
T PLN02353         80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKG--INFQILSNP  156 (473)
T ss_pred             CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC-CCCCChHHHHHHHHHhhCCC--CCeEEEECC
Confidence            9999999631               57788889999999998877655 68888777766666553211  356778888


Q ss_pred             ccHHHHh--c--cCCeEEEEccCC----HHHHHHHHHHHhcCCC-eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012720          266 SFALELM--N--KLPTAMVVASKD----RKLANAVQQLLASKHL-RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN  336 (458)
Q Consensus       266 ~~a~ei~--~--g~~t~v~i~g~d----~e~~e~l~~lL~~~g~-~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~  336 (458)
                      .+..+.-  .  -.+..+++++.+    .+..++++++++...- ......++..+|..|+                 ..
T Consensus       157 Erl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~-----------------~e  219 (473)
T PLN02353        157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKL-----------------AA  219 (473)
T ss_pred             CccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHH-----------------HH
Confidence            8765421  1  234456667754    3457888888875421 2344567777776654                 44


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHH
Q 012720          337 NSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAG  415 (458)
Q Consensus       337 n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g  415 (458)
                      |.+.++....++|+..+|+++|+|...+.+..+....+       +.++ .+|.-+ -|.++             .||..
T Consensus       220 N~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~ri-------g~~~l~PG~G~-GG~Cl-------------pkD~~  278 (473)
T PLN02353        220 NAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRI-------GPKFLNASVGF-GGSCF-------------QKDIL  278 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCCcC-------CCCCCCCCCCC-CCcch-------------hhhHH
Confidence            56677788899999999999999987766533221110       0011 112111 13333             27889


Q ss_pred             HHHHHHHHcCCC--CcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720          416 AVIALAQKYNVK--MPVLTAVARIIDNELTPKKAVLELMS  453 (458)
Q Consensus       416 ~v~~lA~~~gv~--~P~~~~v~~ll~~~~~~~~~~~~l~~  453 (458)
                      ++...|+++|++  .++.+++.++  +...|..+++++..
T Consensus       279 ~L~~~a~~~g~~~~~~l~~~~~~i--N~~~~~~vv~~~~~  316 (473)
T PLN02353        279 NLVYICECNGLPEVAEYWKQVIKM--NDYQKSRFVNRVVS  316 (473)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence            999999999998  8888888765  56667777766653

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.79  E-value=3.5e-18  Score=179.65  Aligned_cols=203  Identities=10%  Similarity=0.074  Sum_probs=150.3

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCCEEEE
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCLH  205 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDiVil  205 (458)
                      +|+|||+|+||..||.+|+++|  ++|++|+|++++++.+.+.+...         .++..+.++++++   +.+|+||+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G--~~V~v~drt~~~~~~l~~~~~~g---------~~~~~~~s~~e~v~~l~~~dvIil   69 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHG--FTVSVYNRTPEKTDEFLAEHAKG---------KKIVGAYSIEEFVQSLERPRKIML   69 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHhhccCC---------CCceecCCHHHHHhhcCCCCEEEE
Confidence            4899999999999999999999  99999999999999888652110         0123445666654   56899999


Q ss_pred             cCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720          206 AMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (458)
Q Consensus       206 aVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~  284 (458)
                      |||+ .+++++++++.+++.++++||+++|+...++.+. .+.+.+. |     +.++.+|..+...+..... .++.|+
T Consensus        70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~-~~~l~~~-g-----i~fvdapVsGG~~gA~~G~-~im~GG  141 (467)
T TIGR00873        70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERR-YKELKAK-G-----ILFVGSGVSGGEEGARKGP-SIMPGG  141 (467)
T ss_pred             ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHH-HHHHHhc-C-----CEEEcCCCCCCHHHHhcCC-cCCCCC
Confidence            9997 6799999999999999999999998665554332 3333332 3     3466666665543322222 345677


Q ss_pred             CHHHHHHHHHHHhcCCCeE------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-Hc
Q 012720          285 DRKLANAVQQLLASKHLRI------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KM  357 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v------~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~-a~  357 (458)
                      +++.+++++++|+..+-++      .+.++.                 |.+..+|+.+|.+...+.++++|+..+++ +.
T Consensus       142 ~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~-----------------GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~  204 (467)
T TIGR00873       142 SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD-----------------GAGHYVKMVHNGIEYGDMQLICEAYDILKDGL  204 (467)
T ss_pred             CHHHHHHHHHHHHHHhhhcCCCCceEEECCc-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999766542      333332                 45566778888888889999999999985 79


Q ss_pred             CCCccccccc
Q 012720          358 GAKPATITGL  367 (458)
Q Consensus       358 Gi~~~~~~~~  367 (458)
                      |++++.+.++
T Consensus       205 g~~~~~l~~v  214 (467)
T TIGR00873       205 GLSNEEIAEV  214 (467)
T ss_pred             CCCHHHHHHH
Confidence            9998877654

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.76  E-value=1.4e-16  Score=156.29  Aligned_cols=252  Identities=12%  Similarity=0.128  Sum_probs=165.5

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC----eEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL----KVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~----~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |||+|||+|+||.+|+..|.++|  +    +|++| +|++++.+.+.+.|              +..+++..++++++|+
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g--~~~~~~i~v~~~r~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDv   64 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASG--VVPPSRISTADDSNPARRDVFQSLG--------------VKTAASNTEVVKSSDV   64 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCC--CCCcceEEEEeCCCHHHHHHHHHcC--------------CEEeCChHHHHhcCCE
Confidence            68999999999999999999998  6    89998 99998887776644              3455677787889999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      ||+|||++++++++.++.+.+.++++||++.+|+..+       .+.+.++..  . .+...|+.+..+..+.. .+..+
T Consensus        65 Vil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~-------~l~~~~~~~--~-vvr~mP~~~~~~~~~~~-~l~~~  133 (266)
T PLN02688         65 IILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLA-------DLQEWAGGR--R-VVRVMPNTPCLVGEAAS-VMSLG  133 (266)
T ss_pred             EEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHH-------HHHHHcCCC--C-EEEECCCcHHHHhCceE-EEEeC
Confidence            9999999999999999988888899999998887653       233444431  1 23367887776654432 23332


Q ss_pred             -cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720          283 -SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (458)
Q Consensus       283 -g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~  361 (458)
                       +.+++.++.++++|+..|. +.+.++-.        .+.+....|.+       ..+...+..++.|+   +++.|+++
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~--------~d~~~~~~g~g-------~a~~~~~~~a~~ea---~~~~Gl~~  194 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDEKL--------LDAVTGLSGSG-------PAYIFLAIEALADG---GVAAGLPR  194 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHH--------cchhHhhhcCH-------HHHHHHHHHHHHHH---HHHcCCCH
Confidence             3477889999999999997 65543210        11111111211       22355667777777   88899999


Q ss_pred             cccccccCCcchhhhhccCCCccchHHHHh-hCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720          362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN  440 (458)
Q Consensus       362 ~~~~~~~g~gd~~~t~~~~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~  440 (458)
                      +...++.      .....      .....+ ..|.+.+++.++.. ..-|  .....++..++.|+.-.+.+++.+.++.
T Consensus       195 ~~a~~~~------~~~~~------gs~~l~~~~~~~~~~l~~~v~-spgG--~t~~~l~~l~~~g~~~~~~~a~~~~~~r  259 (266)
T PLN02688        195 DVALSLA------AQTVL------GAAKMVLETGKHPGQLKDMVT-SPGG--TTIAGVHELEKGGFRAALMNAVVAAAKR  259 (266)
T ss_pred             HHHHHHH------HHHHH------HHHHHHHhcCCCHHHHHHhCC-CCch--HHHHHHHHHHHCChHHHHHHHHHHHHHH
Confidence            8776531      00000      001112 23444433322220 1111  2245567777888888888888877654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.73  E-value=3.9e-16  Score=156.08  Aligned_cols=216  Identities=17%  Similarity=0.154  Sum_probs=159.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~  199 (458)
                      .++|+|||+|.+|.++|..++++|  ++|+.+|.++.+++.+++. ......++..       -...+++++|+++ ++.
T Consensus         9 ~~~I~ViGLGYVGLPlA~~fA~~G--~~ViG~DIn~~~Vd~ln~G-~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~   84 (436)
T COG0677           9 SATIGVIGLGYVGLPLAAAFASAG--FKVIGVDINQKKVDKLNRG-ESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKE   84 (436)
T ss_pred             ceEEEEEccccccHHHHHHHHHcC--CceEeEeCCHHHHHHHhCC-cceeecCcHHHHHHHHHhcCCceEecChhh-ccc
Confidence            479999999999999999999999  9999999999999999873 3222222221       1345889999988 579


Q ss_pred             CCEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH-hCCCC-CCEEEEECccc
Q 012720          200 ADYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA-LRNPR-QPFIALSGPSF  267 (458)
Q Consensus       200 aDiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~-lg~~~-~~~~vl~gP~~  267 (458)
                      ||++|+|||+.          .+++..+.|++.+++|++||.=| ++.++|.+.+...+.+. -|-.. .++.+-+.|..
T Consensus        85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlES-T~~PGTTe~v~~plle~~sgL~~~~Df~laysPER  163 (436)
T COG0677          85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILES-TTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER  163 (436)
T ss_pred             CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEec-CCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence            99999999963          47778889999999999988666 68888877777766664 22111 23444455543


Q ss_pred             -----HHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Q 012720          268 -----ALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL  342 (458)
Q Consensus       268 -----a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al  342 (458)
                           ...-....+  =+++|.+++..+....+++..--.+....+...+|..|++-|                 ..+..
T Consensus       164 v~PG~~~~el~~~~--kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN-----------------~fRdV  224 (436)
T COG0677         164 VLPGNVLKELVNNP--KVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTEN-----------------TFRDV  224 (436)
T ss_pred             cCCCchhhhhhcCC--ceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhh-----------------hhhHH
Confidence                 221111222  256787888888888888876555777788888888776554                 55667


Q ss_pred             HHHHHHHHHHHHHHcCCCcccccc
Q 012720          343 VAQGCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       343 ~~~~l~E~~~la~a~Gi~~~~~~~  366 (458)
                      ..+..+|+..+|.++|+|...+.+
T Consensus       225 NIALaNElali~~~~GIdvwevIe  248 (436)
T COG0677         225 NIALANELALICNAMGIDVWEVIE  248 (436)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHH
Confidence            788999999999999999665554

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.70  E-value=1.8e-15  Score=146.54  Aligned_cols=201  Identities=15%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCC-CCe-EEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKS-QLK-VYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~-~~~-V~v~~r~-~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      ||+.|||+|||+|.||.+++..|.++|. +.+ +++++|+ +++.+.+.+..             ++..+.+.+++++++
T Consensus         1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~   67 (245)
T PRK07634          1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------------NVSTTTDWKQHVTSV   67 (245)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------------CcEEeCChHHHHhcC
Confidence            5667899999999999999999998762 233 7778874 66676665531             134556788888999


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~  280 (458)
                      |+||+|+|.+.++++++++.++++ +++||++++|+..+       .+++.++..  ...++.+|+++.+++.+.+....
T Consensus        68 DiViiavp~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~-------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~  137 (245)
T PRK07634         68 DTIVLAMPPSAHEELLAELSPLLS-NQLVVTVAAGIGPS-------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTM  137 (245)
T ss_pred             CEEEEecCHHHHHHHHHHHHhhcc-CCEEEEECCCCCHH-------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEee
Confidence            999999999999999999988776 67999999999864       355555432  23568999999999888665544


Q ss_pred             EccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      ....+++..+.++++|+..|......++.         .+.++...|.       ..   +++...+..+...+.+.|++
T Consensus       138 ~~~~~~~~~~~v~~lf~~~G~~~~~~e~~---------~~~~~a~~gs-------~p---a~~~~~~~a~~~~~~~~Gl~  198 (245)
T PRK07634        138 GQSVNETHKETLQLILKGIGTSQLCTEEE---------VHQLTAVTGS-------AP---AFLYYFAESLIEATKSYGVD  198 (245)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEECHHH---------cchHHhhhcc-------hH---HHHHHHHHHHHHHHHHcCCC
Confidence            44567888999999999999887654321         1222211121       11   22233334455558888999


Q ss_pred             cccccc
Q 012720          361 PATITG  366 (458)
Q Consensus       361 ~~~~~~  366 (458)
                      ++...+
T Consensus       199 ~~~a~~  204 (245)
T PRK07634        199 EETAKH  204 (245)
T ss_pred             HHHHHH
Confidence            776543

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.68  E-value=6.2e-16  Score=162.15  Aligned_cols=193  Identities=11%  Similarity=0.057  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCC---CCEEEEcCcc-ccH
Q 012720          138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLG---ADYCLHAMPV-QFS  212 (458)
Q Consensus       138 mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiVilaVp~-~~v  212 (458)
                      ||..||.+|+++|  ++|++|||++++++.+.+. +..          .++..+.+++++++.   +|+||+|||+ .++
T Consensus         1 MG~~mA~nL~~~G--~~V~v~nrt~~~~~~l~~~~g~~----------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v   68 (459)
T PRK09287          1 MGKNLALNIASHG--YTVAVYNRTPEKTDEFLAEEGKG----------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPV   68 (459)
T ss_pred             CcHHHHHHHHhCC--CeEEEECCCHHHHHHHHHhhCCC----------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHH
Confidence            8999999999999  9999999999999998873 310          135667789887764   8999999997 579


Q ss_pred             HHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHH
Q 012720          213 SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV  292 (458)
Q Consensus       213 ~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~e~l  292 (458)
                      ++++.++.+.+.+|.+||+++|....++ ....+.+.+. |     +.++..|..+.+.+...... ++.|++++.++++
T Consensus        69 ~~Vi~~l~~~l~~GdiiID~gn~~~~~t-~~~~~~l~~~-G-----i~fvdapVSGG~~gA~~G~s-iM~GG~~~a~~~~  140 (459)
T PRK09287         69 DAVIEQLLPLLEKGDIIIDGGNSNYKDT-IRREKELAEK-G-----IHFIGMGVSGGEEGALHGPS-IMPGGQKEAYELV  140 (459)
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCCHHHH-HHHHHHHHhc-C-----CeEEecCCCCCHHHHhcCCE-EEEeCCHHHHHHH
Confidence            9999999999999999999997554443 3344444443 3     34666666654433222233 4566689999999


Q ss_pred             HHHHhcCCCeE-------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHH-HcCCCcccc
Q 012720          293 QQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLAT-KMGAKPATI  364 (458)
Q Consensus       293 ~~lL~~~g~~v-------~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~-a~Gi~~~~~  364 (458)
                      +++|+..+-++       .+.++.                 |.+..+|+.+|.+.....++++|+..+++ ++|++++.+
T Consensus       141 ~piL~~ia~~~~~g~~c~~~vG~~-----------------GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l  203 (459)
T PRK09287        141 APILEKIAAKVEDGEPCVTYIGPD-----------------GAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEI  203 (459)
T ss_pred             HHHHHHHhhhhcCCCCceeeeCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            99999766543       344432                 55566778888888889999999999999 589998877


Q ss_pred             ccc
Q 012720          365 TGL  367 (458)
Q Consensus       365 ~~~  367 (458)
                      .++
T Consensus       204 ~~v  206 (459)
T PRK09287        204 ADV  206 (459)
T ss_pred             HHH
Confidence            654

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.68  E-value=4.4e-15  Score=146.96  Aligned_cols=199  Identities=18%  Similarity=0.217  Sum_probs=134.6

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcC--CCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKK--SQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG--~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ..|||+|||+|+||.+|+..|.++|  .+++|++|+|+. ++++.+....             ++..+.++.++++++|+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------------g~~~~~~~~e~~~~aDv   68 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY-------------GVKGTHNKKELLTDANI   68 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc-------------CceEeCCHHHHHhcCCE
Confidence            3479999999999999999999886  247899999975 4566665431             23455677787889999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      ||+|||++.+.+++.++.+.+.++++||++.+|+.+++       +.+.++..  ...+...|+.+.....+ .+ ++.+
T Consensus        69 Vilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~-------l~~~~~~~--~~v~r~mPn~~~~~~~~-~t-~~~~  137 (279)
T PRK07679         69 LFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHS-------IRNLLQKD--VPIIRAMPNTSAAILKS-AT-AISP  137 (279)
T ss_pred             EEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHH-------HHHHcCCC--CeEEEECCCHHHHHhcc-cE-EEee
Confidence            99999999999999999888888999999988998753       33333321  12345667666554433 23 2223


Q ss_pred             c--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720          283 S--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       283 g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      +  .+++..+.++++|+..|..+...++..         +.+...+|.+       +.+...+..++.|+   +++.|++
T Consensus       138 ~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~---------~~~~a~~Gsg-------pa~~~~~~eal~e~---~~~~Gl~  198 (279)
T PRK07679        138 SKHATAEHIQTAKALFETIGLVSVVEEEDM---------HAVTALSGSG-------PAYIYYVVEAMEKA---AKKIGLK  198 (279)
T ss_pred             CCCCCHHHHHHHHHHHHhCCcEEEeCHHHh---------hhHHHhhcCH-------HHHHHHHHHHHHHH---HHHcCCC
Confidence            3  246788999999999997665543311         1111111211       12234444454444   8899999


Q ss_pred             ccccccc
Q 012720          361 PATITGL  367 (458)
Q Consensus       361 ~~~~~~~  367 (458)
                      ++...++
T Consensus       199 ~~~a~~~  205 (279)
T PRK07679        199 EDVAKSL  205 (279)
T ss_pred             HHHHHHH
Confidence            8877653

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.68  E-value=9e-15  Score=144.20  Aligned_cols=197  Identities=13%  Similarity=0.123  Sum_probs=140.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .|||+|||+|+||.+|+..|.++|.  ..+|++|+|++++++.+.+ .|              +..+++..++++++|+|
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g--------------~~~~~~~~e~~~~aDiI   67 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG--------------ITITTNNNEVANSADIL   67 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC--------------cEEeCCcHHHHhhCCEE
Confidence            3689999999999999999999872  2479999999988887765 33              34455777778899999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-  282 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~-  282 (458)
                      |+|||++.+.++++++.+.++++++|||+..|+..+       .+.+.++..  .-.+...|+.+..++.|.. .+..+ 
T Consensus        68 iLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~-------~l~~~l~~~--~~vvR~MPN~~~~vg~g~t-~~~~~~  137 (272)
T PRK12491         68 ILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIK-------STENEFDRK--LKVIRVMPNTPVLVGEGMS-ALCFNE  137 (272)
T ss_pred             EEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHH-------HHHHhcCCC--CcEEEECCChHHHHcCceE-EEEeCC
Confidence            999999999999999999888889999999999874       355555431  1257889999988776632 23232 


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~  362 (458)
                      ..+.+..+.++.+|+..|......++..         +++...+|.       .   -+++...+..+..-+.+.|++.+
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~~~~~E~~~---------d~~talsgs-------g---PAf~~~~~eal~~a~v~~Gl~~~  198 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQTEVVNEKLM---------DVVTSISGS-------S---PAYVYMFIEAMADAAVLGGMPRK  198 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEcHHHh---------hhHHHhccC-------c---HHHHHHHHHHHHHHHHHcCCCHH
Confidence            2356678899999999997765544322         222211121       1   13334444556666777888876


Q ss_pred             cccc
Q 012720          363 TITG  366 (458)
Q Consensus       363 ~~~~  366 (458)
                      +..+
T Consensus       199 ~A~~  202 (272)
T PRK12491        199 QAYK  202 (272)
T ss_pred             HHHH
Confidence            5543

>PRK07680 late competence protein ComER; Validated

Probab=99.65  E-value=3.1e-14  Score=140.43  Aligned_cols=158  Identities=11%  Similarity=0.168  Sum_probs=116.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|||+|+||.+++..|.++|.  .++|++|+|+++..+.+.+..            .++..+.+..+++.++|+||+
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~------------~g~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY------------PGIHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc------------CCeEEECCHHHHHHhCCEEEE
Confidence            589999999999999999999872  137999999998877775531            024556677777889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-C
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K  284 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-~  284 (458)
                      |||++++.++++++.+++.++++||++++|+..       +.+.+.++.    ..+..-|+.+.....|.. .+..+. .
T Consensus        69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~-------~~L~~~~~~----~~~r~~p~~~~~~~~G~t-~~~~g~~~  136 (273)
T PRK07680         69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISV-------EQLETLVPC----QVARIIPSITNRALSGAS-LFTFGSRC  136 (273)
T ss_pred             ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCH-------HHHHHHcCC----CEEEECCChHHHHhhccE-EEeeCCCC
Confidence            999999999999999989888999999998854       234444442    133445665544434432 222332 3


Q ss_pred             CHHHHHHHHHHHhcCCCeEEEcCCh
Q 012720          285 DRKLANAVQQLLASKHLRISTSSDV  309 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~~~~di  309 (458)
                      +.+..+.+.++|+..|..+...+++
T Consensus       137 ~~~~~~~~~~ll~~~G~~~~i~e~~  161 (273)
T PRK07680        137 SEEDQQKLERLFSNISTPLVIEEDI  161 (273)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEChHh
Confidence            5677899999999999877776654

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.64  E-value=3.7e-15  Score=151.13  Aligned_cols=200  Identities=14%  Similarity=0.121  Sum_probs=136.9

Q ss_pred             CeEEEECcchH--------------------HHHHHHHHHhcCCCCeEEEEeCCHHH-----HHHHHhhcCCCccCCCCC
Q 012720          128 NKVVVLGGGSF--------------------GTAMAAHVANKKSQLKVYMLMRDPAV-----CQSINEKHCNCRYFPEQK  182 (458)
Q Consensus       128 ~kI~IIGaG~m--------------------G~~iA~~La~aG~~~~V~v~~r~~~~-----~e~l~~~g~~~~~~~~~~  182 (458)
                      |||.|.|+|+-                    |++||.+|+++|  |+|++|||+++.     ++.+.+.|          
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG--~~V~v~Dr~~~~l~~~~~~~l~~~G----------   68 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAG--HDVVLAEPNRSILSEELWKKVEDAG----------   68 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCC--CeEEEEECCHHHhhHHHHHHHHHCC----------
Confidence            68888888873                    888999999999  999999999873     33344332          


Q ss_pred             CCCceEEeCCHHhhcCCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC------
Q 012720          183 LPENVIATTDAKTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP------  255 (458)
Q Consensus       183 l~~~i~a~~~~~ea~~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~------  255 (458)
                          +.++++..++++++|+||+|+|... +++++.++.+.++++++|+++++ +.+..   .++.+.+.++..      
T Consensus        69 ----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST-~~~~~---~s~~l~~~l~~~~~~~gi  140 (342)
T PRK12557         69 ----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCT-VSPVV---LYYSLEGELRTKRKDVGI  140 (342)
T ss_pred             ----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecC-CCHHH---HHHHHHHHhcccccccCe
Confidence                4566788888899999999999877 89999999999999999999885 44432   223333333210      


Q ss_pred             --CCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhccc
Q 012720          256 --RQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN  333 (458)
Q Consensus       256 --~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~k  333 (458)
                        ..+..+..+|.++..+..|.++. ...+.+++.+++++++|+..|.+++..+.                  |....+|
T Consensus       141 ~~~~p~~v~Gae~g~l~Vm~gg~t~-~~~~~~~e~~e~v~~LL~a~G~~v~~~~~------------------g~~~~vk  201 (342)
T PRK12557        141 SSMHPAAVPGTPQHGHYVIAGKTTN-GTELATEEQIEKCVELAESIGKEPYVVPA------------------DVVSAVA  201 (342)
T ss_pred             eecCCccccccccchheEEeCCCcc-cccCCCHHHHHHHHHHHHHcCCEEEEeCH------------------HHHHHHH
Confidence              01222223333333222222221 11234788899999999999998876552                  1223334


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720          334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       334 l~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~  366 (458)
                      +.+|.+.++...++.|++.++++.|.+|..+.+
T Consensus       202 ~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~  234 (342)
T PRK12557        202 DMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIE  234 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            556677777788889999999999888776654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.63  E-value=6e-14  Score=140.83  Aligned_cols=255  Identities=16%  Similarity=0.129  Sum_probs=157.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCC---CCCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPE---QKLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-------~~~~~~~~---~~l~~~i~a~~~~~ea  196 (458)
                      +|||+|||+|.||+.||..|+++|  ++|++|||+++.++...+.-       ....+.++   ..+..++..+++++++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a   79 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA   79 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence            468999999999999999999999  99999999998776543210       00001110   1123456788899888


Q ss_pred             cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc
Q 012720          197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK  274 (458)
Q Consensus       197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g  274 (458)
                      ++++|+||.|+|..  ....++.++....+++.++.+.+++...       ..+.+.+..+  ...+...|..+....  
T Consensus        80 ~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~-------~~la~~~~~~--~~~~~~hp~~p~~~~--  148 (308)
T PRK06129         80 VADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA-------SAFTEHLAGR--ERCLVAHPINPPYLI--  148 (308)
T ss_pred             hCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCH-------HHHHHhcCCc--ccEEEEecCCCcccC--
Confidence            89999999999975  3566667777777666666554443322       2233333221  123344444332111  


Q ss_pred             CCeEEEEc---cCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720          275 LPTAMVVA---SKDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI  350 (458)
Q Consensus       275 ~~t~v~i~---g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~  350 (458)
                       + .+.+.   +.+++.++++.++|+..|.++.+.+ +..+.     +                .|    .+...+++|+
T Consensus       149 -~-lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~-----i----------------~n----rl~~a~~~EA  201 (308)
T PRK06129        149 -P-VVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF-----V----------------LN----RLQGALLREA  201 (308)
T ss_pred             -c-eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH-----H----------------HH----HHHHHHHHHH
Confidence             1 22333   3678999999999999998877653 43221     1                11    1345789999


Q ss_pred             HHHHHHcCCCcccccccc--CCcchhhhhccCCCccchHHHHh-hCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCC
Q 012720          351 RWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK  427 (458)
Q Consensus       351 ~~la~a~Gi~~~~~~~~~--g~gd~~~t~~~~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~  427 (458)
                      +.++++.|++++.+.+..  +.|..... .    ..+ .-.++ ..|+... .         ..+|..+..++++..+.+
T Consensus       202 ~~l~~~g~~~~~~id~~~~~~~g~~~~~-~----gp~-~~~d~~~~~g~~~-~---------~~k~~~l~~~~~~~~~~~  265 (308)
T PRK06129        202 FRLVADGVASVDDIDAVIRDGLGLRWSF-M----GPF-ETIDLNAPGGVAD-Y---------AQRYGPMYRRMAAERGQP  265 (308)
T ss_pred             HHHHHcCCCCHHHHHHHHHhccCCCccC-c----CHH-HHHhccccccHHH-H---------HHHHHHHHHhhccccCCC
Confidence            999999999998876542  22211000 0    000 01111 1122211 1         247888999999999999


Q ss_pred             CcHHHHHHHH
Q 012720          428 MPVLTAVARI  437 (458)
Q Consensus       428 ~P~~~~v~~l  437 (458)
                      .|+++..++-
T Consensus       266 ~~~~~~~~~~  275 (308)
T PRK06129        266 VPWDGELVAR  275 (308)
T ss_pred             chhhHHHHHH
Confidence            9988765553

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.60  E-value=6.1e-14  Score=136.52  Aligned_cols=196  Identities=15%  Similarity=0.168  Sum_probs=142.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKK--SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG--~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +|||+|||+|+||.+|+..|.++|  ...+|++.+|++++.+++.+.-             ++..+++..+++.++|+||
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-------------g~~~~~~~~~~~~~advv~   67 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-------------GVVTTTDNQEAVEEADVVF   67 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-------------CCcccCcHHHHHhhCCEEE
Confidence            479999999999999999999998  2368999999999887565531             1122557778889999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE-cc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV-AS  283 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i-~g  283 (458)
                      +|||++..++++.++.+ ..++++|||+..|+..+       .+.+.++.  . -.+...|+.+..++.|... +.. ..
T Consensus        68 LavKPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~-------~l~~~l~~--~-~vvR~MPNt~a~vg~g~t~-i~~~~~  135 (266)
T COG0345          68 LAVKPQDLEEVLSKLKP-LTKDKLVISIAAGVSIE-------TLERLLGG--L-RVVRVMPNTPALVGAGVTA-ISANAN  135 (266)
T ss_pred             EEeChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHH-------HHHHHcCC--C-ceEEeCCChHHHHcCccee-eecCcc
Confidence            99999999999999998 77899999999999874       45566652  1 2577899998888776432 222 12


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      .+++..+.+.++|+..|.-+.+.++..         +.+...+|.       ..   +++...+..+..-+.+.|++.++
T Consensus       136 ~~~~~~~~v~~l~~~~G~v~~v~E~~~---------da~TaisGS-------gP---Ayv~~~iEal~~agv~~Gl~~~~  196 (266)
T COG0345         136 VSEEDKAFVEALLSAVGKVVEVEESLM---------DAVTALSGS-------GP---AYVFLFIEALADAGVRLGLPREE  196 (266)
T ss_pred             CCHHHHHHHHHHHHhcCCeEEechHHh---------hHHHHHhcC-------CH---HHHHHHHHHHHHHHHHcCCCHHH
Confidence            356778899999999998777665432         222222221       12   33334444566667788998776


Q ss_pred             ccc
Q 012720          364 ITG  366 (458)
Q Consensus       364 ~~~  366 (458)
                      ..+
T Consensus       197 A~~  199 (266)
T COG0345         197 ARE  199 (266)
T ss_pred             HHH
Confidence            654

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.60  E-value=4.7e-14  Score=150.31  Aligned_cols=201  Identities=16%  Similarity=0.210  Sum_probs=135.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc----CCCccCCCCCC--CCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH----CNCRYFPEQKL--PENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g----~~~~~~~~~~l--~~~i~a~~~~~ea~~~a  200 (458)
                      .|||+|||+|.||.+||..|+++|  ++|++||++++.++.+.+.-    ....++....+  ..++..++++++++++|
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G--~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~a   81 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAG--IDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGA   81 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCC
Confidence            579999999999999999999999  99999999998877653210    00011111111  12367788998889999


Q ss_pred             CEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeE
Q 012720          201 DYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA  278 (458)
Q Consensus       201 DiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~  278 (458)
                      |+||.|+|...  ...++.++.+.++++++|.+.+.|+...       .+.+.+..+  ...++.-|..+...  + + .
T Consensus        82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s-------~l~~~~~~~--~r~~~~hP~nP~~~--~-~-L  148 (495)
T PRK07531         82 DWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPS-------DLQEGMTHP--ERLFVAHPYNPVYL--L-P-L  148 (495)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCc--ceEEEEecCCCccc--C-c-e
Confidence            99999999764  4556677888888888887777777643       223333321  23455555443321  1 2 2


Q ss_pred             EEEccC---CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH-HHHHHHHHHHHHH
Q 012720          279 MVVASK---DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA-LVAQGCSEIRWLA  354 (458)
Q Consensus       279 v~i~g~---d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~a-l~~~~l~E~~~la  354 (458)
                      +.+.++   +++.+++++++|+..|....+...                         ..+|.... ++...++|++.++
T Consensus       149 vevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k-------------------------~~~gfi~nrl~~a~~~EA~~L~  203 (495)
T PRK07531        149 VELVGGGKTSPETIRRAKEILREIGMKPVHIAK-------------------------EIDAFVGDRLLEALWREALWLV  203 (495)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecC-------------------------CCcchhHHHHHHHHHHHHHHHH
Confidence            334333   378999999999999988766431                         22333332 3344469999999


Q ss_pred             HHcCCCccccccc
Q 012720          355 TKMGAKPATITGL  367 (458)
Q Consensus       355 ~a~Gi~~~~~~~~  367 (458)
                      ++.|++++++.+.
T Consensus       204 ~~g~~s~~~id~~  216 (495)
T PRK07531        204 KDGIATTEEIDDV  216 (495)
T ss_pred             HcCCCCHHHHHHH
Confidence            9999998877654

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.59  E-value=1.6e-13  Score=134.75  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=113.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||||+|||+|+||..++..|.++|. .++|.+|+|+++..+.+.+..             ++..+.+.++++.++|+||+
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-------------g~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-------------GVRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-------------CCeecCChHHHHhcCCEEEE
Confidence            6899999999999999999998862 257999999998888777641             12344577777789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-C
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-K  284 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-~  284 (458)
                      |||.+.+.++++.+.+.+  +++||++++|+..+       .+.+.++..  .-.+..-|+++.....+. +.+..+. .
T Consensus        69 ~v~~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~-------~l~~~~~~~--~~iv~~~P~~p~~~~~~~-~~i~~~~~~  136 (267)
T PRK11880         69 AVKPQVMEEVLSELKGQL--DKLVVSIAAGVTLA-------RLERLLGAD--LPVVRAMPNTPALVGAGM-TALTANALV  136 (267)
T ss_pred             EcCHHHHHHHHHHHHhhc--CCEEEEecCCCCHH-------HHHHhcCCC--CcEEEecCCchHHHcCce-EEEecCCCC
Confidence            999999999999998876  57899999998643       344444421  112345677665554432 2222232 4


Q ss_pred             CHHHHHHHHHHHhcCCCeEEEc
Q 012720          285 DRKLANAVQQLLASKHLRISTS  306 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~~~  306 (458)
                      +++..+.++.+|+..|..+...
T Consensus       137 ~~~~~~~v~~l~~~lG~~~~~~  158 (267)
T PRK11880        137 SAEDRELVENLLSAFGKVVWVD  158 (267)
T ss_pred             CHHHHHHHHHHHHhCCeEEEEC
Confidence            7888899999999999765554

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.57  E-value=1.4e-13  Score=138.32  Aligned_cols=202  Identities=19%  Similarity=0.214  Sum_probs=133.3

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----cCCCccCCCC--CCCCceEEeCCHHhh
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYFPEQ--KLPENVIATTDAKTA  196 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-----g~~~~~~~~~--~l~~~i~a~~~~~ea  196 (458)
                      |..++||+|||+|.||+.||..|+++|  ++|++|+++++.++.+++.     +....  .+.  .....+..+++.+++
T Consensus         1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~   76 (311)
T PRK06130          1 MNPIQNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVYAP--LGIASAGMGRIRMEAGLAAA   76 (311)
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHhhh--cccHHHHhhceEEeCCHHHH
Confidence            345679999999999999999999999  9999999999888777652     21000  000  011235667788887


Q ss_pred             cCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc
Q 012720          197 LLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK  274 (458)
Q Consensus       197 ~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g  274 (458)
                      ++++|+||+|||...  ...++.++.+.++++++|++.+.|+...       .+.+.++... .+ +..-|..+...  +
T Consensus        77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~-------~l~~~~~~~~-~~-ig~h~~~p~~~--~  145 (311)
T PRK06130         77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT-------AIAQAVTRPE-RF-VGTHFFTPADV--I  145 (311)
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH-------HHHhhcCCcc-cE-EEEccCCCCcc--C
Confidence            899999999999753  6778888888888888888888777542       2333333210 11 11112222111  1


Q ss_pred             CCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcC-ChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHH
Q 012720          275 LPTAMVVAS--KDRKLANAVQQLLASKHLRISTSS-DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIR  351 (458)
Q Consensus       275 ~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~  351 (458)
                      ... .++.+  .+++.++.+.++|+..|..+.... |..+..                     .+|    ++...++|+.
T Consensus       146 ~l~-~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i---------------------~nr----~~~~~~~Ea~  199 (311)
T PRK06130        146 PLV-EVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFI---------------------ANR----IQHALAREAI  199 (311)
T ss_pred             ceE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcH---------------------HHH----HHHHHHHHHH
Confidence            122 22333  268899999999999998766653 543321                     111    2235789999


Q ss_pred             HHHHHcCCCcccccc
Q 012720          352 WLATKMGAKPATITG  366 (458)
Q Consensus       352 ~la~a~Gi~~~~~~~  366 (458)
                      .++++.|++++++..
T Consensus       200 ~l~~~g~~~~~~id~  214 (311)
T PRK06130        200 SLLEKGVASAEDIDE  214 (311)
T ss_pred             HHHHcCCCCHHHHHH
Confidence            999999999877654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.56  E-value=4.1e-13  Score=132.84  Aligned_cols=158  Identities=11%  Similarity=0.144  Sum_probs=119.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |+||+|||+|+||.+++..|.++|.  .++|.+|+|+. ++.+.+....            ..+..+.+..++++++|+|
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~------------~~~~~~~~~~e~~~~aDvV   68 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKY------------PTVELADNEAEIFTKCDHS   68 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHc------------CCeEEeCCHHHHHhhCCEE
Confidence            4789999999999999999998861  36899999864 4444444321            0134456777778899999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-  282 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~-  282 (458)
                      |+|||.+.+.+++.++.++++++++||++++|+..+       .+.+.++.   .-.+...|+.+..++.|.. .+... 
T Consensus        69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~-------~l~~~~~~---~~vvR~MPN~~~~~g~g~t-~~~~~~  137 (277)
T PRK06928         69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLD-------DLLEITPG---LQVSRLIPSLTSAVGVGTS-LVAHAE  137 (277)
T ss_pred             EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH-------HHHHHcCC---CCEEEEeCccHHHHhhhcE-EEecCC
Confidence            999999999999999999888888999999999874       34455543   1257888999988877643 23222 


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcC
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSS  307 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~  307 (458)
                      .-+++..+.++.+|+..|......+
T Consensus       138 ~~~~~~~~~v~~l~~~~G~~~~v~E  162 (277)
T PRK06928        138 TVNEANKSRLEETLSHFSHVMTIRE  162 (277)
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEEch
Confidence            2356778899999999998776654

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.54  E-value=2.5e-13  Score=129.74  Aligned_cols=175  Identities=19%  Similarity=0.193  Sum_probs=119.9

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+||| +|+||+++|..|+++|  ++|++|+|++++++.+.+....  .+........+..+ +..++++++|+||+|
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~~~~~~l~~~~~~--~~~~~g~~~~~~~~-~~~ea~~~aDvVila   75 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDLEKAEEAAAKALE--ELGHGGSDIKVTGA-DNAEAAKRADVVILA   75 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCHHHHHHHHHHHHh--hccccCCCceEEEe-ChHHHHhcCCEEEEE
Confidence            6899997 8999999999999999  9999999999888877654321  01100111122333 456678899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcch----------hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc--
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT----------LRMMSQIIPQALRNPRQPFIALSGPSFALELMNK--  274 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t----------~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g--  274 (458)
                      +|.+++.++++++.+.+. +++||+++||+..+.          ....++.+++.++..  .-.+..-|+...+...+  
T Consensus        76 vp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~  152 (219)
T TIGR01915        76 VPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVD  152 (219)
T ss_pred             CCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCC
Confidence            999999999999877765 589999999997520          012346676766531  01122223333332221  


Q ss_pred             --CCeEEEEccCCHHHHHHHHHHHhcC-CCeEEEcCChH
Q 012720          275 --LPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVT  310 (458)
Q Consensus       275 --~~t~v~i~g~d~e~~e~l~~lL~~~-g~~v~~~~di~  310 (458)
                        ....+.++|.+++..+.+.++.+.. ||..+..+.+.
T Consensus       153 ~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~  191 (219)
T TIGR01915       153 DEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLE  191 (219)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchh
Confidence              1223456777788888999999998 99988766553

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.54  E-value=9.7e-14  Score=129.17  Aligned_cols=163  Identities=23%  Similarity=0.262  Sum_probs=107.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------C-CCceEEeCCHHhhcCCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------L-PENVIATTDAKTALLGA  200 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l-~~~i~a~~~~~ea~~~a  200 (458)
                      |||+|||+|.+|..+|..|+++|  |+|+.+|.++++++.+++ |..+.+.++..      . ..++.++++.++++.++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~-g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNN-GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHT-TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhh-ccccccccchhhhhccccccccchhhhhhhhhhhcc
Confidence            79999999999999999999999  999999999999999887 43333444421      1 35788999999989999


Q ss_pred             CEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhh-HHHHHHHHhCCCCCCEEEEECcccHH
Q 012720          201 DYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRM-MSQIIPQALRNPRQPFIALSGPSFAL  269 (458)
Q Consensus       201 DiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~-l~e~l~~~lg~~~~~~~vl~gP~~a~  269 (458)
                      |++|+|||+.          .+.++++.|.+.++++++||.-| ++.+++.+. +..++++. +.....+.+.+.|.+..
T Consensus        78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S-TvppGtt~~~~~~ile~~-~~~~~~f~la~~PErl~  155 (185)
T PF03721_consen   78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES-TVPPGTTEELLKPILEKR-SGKKEDFHLAYSPERLR  155 (185)
T ss_dssp             SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS-SSSTTHHHHHHHHHHHHH-CCTTTCEEEEE------
T ss_pred             ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc-EEEEeeehHhhhhhhhhh-cccccCCeEEECCCccC
Confidence            9999999853          37888899999999988887666 789887763 44555544 32224567778887654


Q ss_pred             HH----hccCCeEEEEccCCHHHHHHHHHH
Q 012720          270 EL----MNKLPTAMVVASKDRKLANAVQQL  295 (458)
Q Consensus       270 ei----~~g~~t~v~i~g~d~e~~e~l~~l  295 (458)
                      +.    -...+..++.|..+....++++++
T Consensus       156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l  185 (185)
T PF03721_consen  156 EGRAIEDFRNPPRVVGGCDDESAEERLKEL  185 (185)
T ss_dssp             TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred             CCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence            31    012455666676666665566654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.52  E-value=6.3e-13  Score=131.31  Aligned_cols=173  Identities=16%  Similarity=0.167  Sum_probs=113.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.||..||..|.++|..++|++|+|+++.++.+.+.|..             ....+.+++. ++|+||+||
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~-~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV-------------DEIVSFEELK-KCDVIFLAI   66 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC-------------cccCCHHHHh-cCCEEEEeC
Confidence            58999999999999999999998334789999999888877665421             1123556654 599999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE-----ECcccHH-HHhccCCeEEEE
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-----SGPSFAL-ELMNKLPTAMVV  281 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl-----~gP~~a~-ei~~g~~t~v~i  281 (458)
                      |...+.+++.++.+ ++++++|+++.. +.    ..+.+.+.+..+..+.....+     .||..+. ....|....++.
T Consensus        67 p~~~~~~~~~~l~~-l~~~~iv~d~gs-~k----~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~  140 (275)
T PRK08507         67 PVDAIIEILPKLLD-IKENTTIIDLGS-TK----AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCD  140 (275)
T ss_pred             cHHHHHHHHHHHhc-cCCCCEEEECcc-ch----HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEec
Confidence            99999999999988 888999988642 21    223344433322111111111     2232222 223444332222


Q ss_pred             c-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHH
Q 012720          282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN  320 (458)
Q Consensus       282 ~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkN  320 (458)
                      . ..+++.++.++++|+..|.++...+....++..+++-|
T Consensus       141 ~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~  180 (275)
T PRK08507        141 VEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISH  180 (275)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhH
Confidence            2 24677889999999999999888776655555554444

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.52  E-value=3.5e-13  Score=133.42  Aligned_cols=172  Identities=16%  Similarity=0.177  Sum_probs=115.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.||..+|..|.++|  ++|++|+++++..+.+.+.|...            ...++. ++++++|+||+|+
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGLVD------------EASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCcc------------cccCCH-hHhcCCCEEEEcC
Confidence            58999999999999999999999  99999999998888877654210            122344 4578999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECccc-HHH-----HhccCCeEEEE
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF-ALE-----LMNKLPTAMVV  281 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~-a~e-----i~~g~~t~v~i  281 (458)
                      |...+.++++++.+.++++++|++++ ++....    .+.+.+... .+.....+.|+.. +.+     ...|....++.
T Consensus        66 p~~~~~~~~~~l~~~l~~~~ii~d~~-Svk~~~----~~~~~~~~~-~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p  139 (279)
T PRK07417         66 PIGLLLPPSEQLIPALPPEAIVTDVG-SVKAPI----VEAWEKLHP-RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP  139 (279)
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEeCc-chHHHH----HHHHHHhhC-CceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence            99999999999999888888887766 444321    222222211 1111123344431 111     23454443332


Q ss_pred             c-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHH
Q 012720          282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN  320 (458)
Q Consensus       282 ~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkN  320 (458)
                      . ..+++.++.++++++..|.++...+....+...++.-|
T Consensus       140 ~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~sh  179 (279)
T PRK07417        140 TENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISH  179 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcc
Confidence            2 34678889999999999988876665544444444333

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.51  E-value=2.1e-12  Score=126.31  Aligned_cols=190  Identities=15%  Similarity=0.150  Sum_probs=128.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|||+|+||.+|+..|.++|.. .++.+|+|++++.+.+.+...            ++..+++..++++++|+||+|
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~------------~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP------------KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC------------CceEeCCHHHHHHhCCEEEEE
Confidence            5899999999999999999998721 245789999988887766421            134556788878899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~  286 (458)
                      +|++.+.++++++.  +.++++||++..|+..+       .+++.++..  ...+...|+.+.....| .+.  +... .
T Consensus        69 v~p~~~~~vl~~l~--~~~~~~vis~~ag~~~~-------~l~~~~~~~--~~~~r~~P~~~~a~~~g-~t~--~~~~-~  133 (258)
T PRK06476         69 VRPQIAEEVLRALR--FRPGQTVISVIAATDRA-------ALLEWIGHD--VKLVRAIPLPFVAERKG-VTA--IYPP-D  133 (258)
T ss_pred             eCHHHHHHHHHHhc--cCCCCEEEEECCCCCHH-------HHHHHhCCC--CCEEEECCCChhhhCCC-CeE--ecCC-H
Confidence            99988999998863  46788999988776653       344444321  13466778766553333 222  3332 2


Q ss_pred             HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~  366 (458)
                         +.++++|+..|..+...+.       + .++.+....+           ..+.+...+.|+...+++.|++++...+
T Consensus       134 ---~~~~~l~~~lG~~~~~~~e-------~-~~d~~~a~~s-----------~~a~~~~~~~~~~~~~~~~Gl~~~~a~~  191 (258)
T PRK06476        134 ---PFVAALFDALGTAVECDSE-------E-EYDLLAAASA-----------LMATYFGILETATGWLEEQGLKRQKARA  191 (258)
T ss_pred             ---HHHHHHHHhcCCcEEECCh-------H-hccceeehhc-----------cHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence               5789999988877664322       1 1122211111           1223345788999999999999887654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.49  E-value=5.7e-13  Score=132.45  Aligned_cols=166  Identities=13%  Similarity=0.171  Sum_probs=112.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCC---CCCCCceEEeCCHHhhc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPE---QKLPENVIATTDAKTAL  197 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-------g~~~~~~~~---~~l~~~i~a~~~~~ea~  197 (458)
                      +||+|||+|.||..||..|+++|  ++|++||++++.++.+.+.       +........   .....++..++++++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            58999999999999999999999  9999999999988876542       110000000   00123467778888889


Q ss_pred             CCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhc
Q 012720          198 LGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMN  273 (458)
Q Consensus       198 ~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~  273 (458)
                      ++||+||+|+|...  ...++.++.+.+++++++++.+.++.+.+       +.+....+  .....++ .|.+..    
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~-------l~~~~~~~~r~~g~h~~-~Pv~~~----  147 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTE-------IASFTKRPERVIAMHFF-NPVHKM----  147 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH-------HHhhcCCcccEEEEecC-CCcccC----
Confidence            99999999999754  45667788888888987755554676642       22222211  0112233 454321    


Q ss_pred             cCCeEEEEccC---CHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720          274 KLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVT  310 (458)
Q Consensus       274 g~~t~v~i~g~---d~e~~e~l~~lL~~~g~~v~~~~di~  310 (458)
                         ..+.+.++   +++.+++++++|+..|..+.+..|..
T Consensus       148 ---~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~  184 (288)
T PRK09260        148 ---KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP  184 (288)
T ss_pred             ---ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence               23344444   78999999999999998887776654

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.49  E-value=3.7e-12  Score=124.86  Aligned_cols=190  Identities=14%  Similarity=0.132  Sum_probs=129.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .|||+|||+|+||++|+..|.+++.  ..++++++|+++..      +              +....++.++++++|+||
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~--------------~~~~~~~~~~~~~~D~Vi   62 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P--------------FVYLQSNEELAKTCDIIV   62 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C--------------eEEeCChHHHHHhCCEEE
Confidence            3799999999999999999998862  23588888876421      1              123456677778999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-c
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-S  283 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~-g  283 (458)
                      +|+|++++++++.++.+++.+ ..||++.+|+..+       .+++.++..  ...+...|+++..+..|. +.+... .
T Consensus        63 lavkp~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~-------~l~~~~~~~--~~vvr~mPn~p~~~g~g~-t~i~~~~~  131 (260)
T PTZ00431         63 LAVKPDLAGKVLLEIKPYLGS-KLLISICGGLNLK-------TLEEMVGVE--AKIVRVMPNTPSLVGQGS-LVFCANNN  131 (260)
T ss_pred             EEeCHHHHHHHHHHHHhhccC-CEEEEEeCCccHH-------HHHHHcCCC--CeEEEECCCchhHhccee-EEEEeCCC
Confidence            999999999999999988764 5789999999864       344544431  124678999997765543 222222 2


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      .+.+..+.++.+|+..|..+...++..         +++...+|.       .   -+++...+..+..-+.+.|++.++
T Consensus       132 ~~~~~~~~v~~l~~~~G~~~~v~E~~~---------d~~ta~~gs-------g---PA~~~~~~~al~~~~v~~Gl~~~~  192 (260)
T PTZ00431        132 VDSTDKKKVIDIFSACGIIQEIKEKDM---------DIATAISGC-------G---PAYVFLFIESLIDAGVKNGLNRDV  192 (260)
T ss_pred             CCHHHHHHHHHHHHhCCcEEEEChHHc---------chhhhhcCC-------H---HHHHHHHHHHHHHHHHHcCCCHHH
Confidence            356778999999999998887754321         221111121       1   233344444556667778888765


Q ss_pred             ccc
Q 012720          364 ITG  366 (458)
Q Consensus       364 ~~~  366 (458)
                      ..+
T Consensus       193 a~~  195 (260)
T PTZ00431        193 SKN  195 (260)
T ss_pred             HHH
Confidence            544

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=7.9e-12  Score=117.44  Aligned_cols=195  Identities=10%  Similarity=0.099  Sum_probs=134.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDiVi  204 (458)
                      |+|+.||+|.||..+..+|.+.|  |+|..||++++.++++...+.              ..++++++.   +....+|.
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~g--hdvV~yD~n~~av~~~~~~ga--------------~~a~sl~el~~~L~~pr~vW   64 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGG--HDVVGYDVNQTAVEELKDEGA--------------TGAASLDELVAKLSAPRIVW   64 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCC--CeEEEEcCCHHHHHHHHhcCC--------------ccccCHHHHHHhcCCCcEEE
Confidence            68999999999999999999999  999999999999999988763              233455554   45679999


Q ss_pred             EcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       205 laVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      ++||.. .+.++++++.+.+.+|.+||+-.|.-..++.+.. +.+.+. |..+.++....|+-     +.....+++++ 
T Consensus        65 lMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~-~~l~~k-gi~flD~GTSGG~~-----G~~~G~~lMiG-  136 (300)
T COG1023          65 LMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRA-KLLAEK-GIHFLDVGTSGGVW-----GAERGYCLMIG-  136 (300)
T ss_pred             EEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHH-HHHHhc-CCeEEeccCCCCch-----hhhcCceEEec-
Confidence            999975 7999999999999999999998876665543322 223232 32222333333332     11223344445 


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      ++.+.++++.++|+.....    ++  +        ..++=.+|...=+|+.+|-+---+.++++|...+.+....|
T Consensus       137 G~~~a~~~~~pif~~lA~g----e~--G--------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD  199 (300)
T COG1023         137 GDEEAVERLEPIFKALAPG----ED--G--------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFD  199 (300)
T ss_pred             CcHHHHHHHHHHHHhhCcC----cC--c--------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCC
Confidence            4899999999999863221    00  0        00001123344445666776677789999999999987655

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.45  E-value=3.4e-13  Score=111.56  Aligned_cols=93  Identities=26%  Similarity=0.338  Sum_probs=77.1

Q ss_pred             eEEEECcchHHHHHHHHHHhcC-CCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCCEEEE
Q 012720          129 KVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH  205 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG-~~~~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil  205 (458)
                      ||+|||+|+||.+++..|.++| .+++|.++ +|++++.+++.++..             +.++. +..++++++|+||+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------------VQATADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------------TEEESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------------cccccCChHHhhccCCEEEE
Confidence            7999999999999999999987 34789955 999999988876531             23444 67888899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      |||.+.+.+++.++ +...+++++|++.+|
T Consensus        68 av~p~~~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVKPQQLPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S-GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             EECHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence            99999999999999 667789999999876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.45  E-value=3.9e-12  Score=133.53  Aligned_cols=163  Identities=15%  Similarity=0.242  Sum_probs=113.7

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+||| +|.||.++|..|.++|  ++|++|+|+++.++.+....             ++..+++.++++.++|+||+|
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G--~~V~v~~r~~~~~~~~a~~~-------------gv~~~~~~~e~~~~aDvVIla   65 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKG--FEVIVTGRDPKKGKEVAKEL-------------GVEYANDNIDAAKDADIVIIS   65 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCC--CEEEEEECChHHHHHHHHHc-------------CCeeccCHHHHhccCCEEEEe
Confidence            6899998 7999999999999999  99999999987765554321             123455777788999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEEc-c
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVA-S  283 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t~v~i~-g  283 (458)
                      +|...+.+++.++.+.++++++|++++. +-.    ...+.+.+.++..  +.....+.||..+  ...|....+... +
T Consensus        66 vp~~~~~~vl~~l~~~l~~~~iViDvsS-vK~----~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p~~~  138 (437)
T PRK08655         66 VPINVTEDVIKEVAPHVKEGSLLMDVTS-VKE----RPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTPTEK  138 (437)
T ss_pred             cCHHHHHHHHHHHHhhCCCCCEEEEccc-ccH----HHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEecCCC
Confidence            9999999999999999999999999883 221    2234444444321  1111123345433  223443322222 1


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHH
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGV  312 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~  312 (458)
                      .+.+.++.++++|+..|.++...+....+
T Consensus       139 ~~~~~~~~v~~ll~~~G~~v~~~~~e~HD  167 (437)
T PRK08655        139 RSNPWFDKVKNFLEKEGARVIVTSPEEHD  167 (437)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEECCHHHHH
Confidence            35788899999999999998876554433

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=99.45  E-value=2.8e-13  Score=121.34  Aligned_cols=115  Identities=18%  Similarity=0.305  Sum_probs=87.5

Q ss_pred             EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc
Q 012720          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (458)
Q Consensus       130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~  209 (458)
                      |+|+|+|+||+.+|.+|+++|  ++|+++.|++ ..+.+++.|+......+...........+..+..+.+|+||+|||+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            789999999999999999999  9999999999 8888988876433222111101112222332335789999999999


Q ss_pred             ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       210 ~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      .+++++++.+++++.+++.|+.++||++..      +.+.+.++
T Consensus        78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~------~~l~~~~~  115 (151)
T PF02558_consen   78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNE------EVLAEYFP  115 (151)
T ss_dssp             GGHHHHHHHHCTGEETTEEEEEESSSSSHH------HHHHCHST
T ss_pred             cchHHHHHHHhhccCCCcEEEEEeCCCCcH------HHHHHHcC
Confidence            999999999999999999999999999875      44555543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.43  E-value=2.9e-12  Score=119.50  Aligned_cols=164  Identities=16%  Similarity=0.191  Sum_probs=115.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||+|+|+|+|+||.++|.+|+++|  |+|++-+|+.+ ..+...+ .+..          .+... +.+++.+.+|+||+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag--~eV~igs~r~~~~~~a~a~-~l~~----------~i~~~-~~~dA~~~aDVVvL   66 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAG--HEVIIGSSRGPKALAAAAA-ALGP----------LITGG-SNEDAAALADVVVL   66 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCC--CeEEEecCCChhHHHHHHH-hhcc----------ccccC-ChHHHHhcCCEEEE
Confidence            589999999999999999999999  99999865544 3333333 2211          12222 56678899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCc----c------hhhhHHHHHHHHhCCCCCCEEEEECcc--cHHHHhc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL----N------TLRMMSQIIPQALRNPRQPFIALSGPS--FALELMN  273 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~----~------t~~~l~e~l~~~lg~~~~~~~vl~gP~--~a~ei~~  273 (458)
                      +||..++.+++.++...+. |++||+.+|.+.+    .      .....++.+.+.++...    ++.+-+  .+..+..
T Consensus        67 AVP~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ak----VVkAFn~i~a~~l~~  141 (211)
T COG2085          67 AVPFEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAK----VVKAFNTIPAAVLAD  141 (211)
T ss_pred             eccHHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcc----hhhhhcccCHHHhcc
Confidence            9999999999999998887 8999999997521    1      12235677777776531    221111  1112111


Q ss_pred             ----cCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCCh
Q 012720          274 ----KLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDV  309 (458)
Q Consensus       274 ----g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di  309 (458)
                          +....+.+++.|.+..+.+.++.++.||+....+.+
T Consensus       142 ~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L  181 (211)
T COG2085         142 LAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPL  181 (211)
T ss_pred             CCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceeecccc
Confidence                122345678888889999999999999998765543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.43  E-value=4.8e-12  Score=125.77  Aligned_cols=198  Identities=20%  Similarity=0.233  Sum_probs=126.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc--CCCccCCCCC---------CCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH--CNCRYFPEQK---------LPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g--~~~~~~~~~~---------l~~~i~a~~~~~e  195 (458)
                      ++||+|||+|.||..+|..|+++|  ++|++||++++.++.+.+.-  ....+.+...         ...++..++|.++
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~   80 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHG--FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE   80 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence            579999999999999999999999  99999999998777665421  0011111111         1245778889988


Q ss_pred             hcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHH
Q 012720          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALEL  271 (458)
Q Consensus       196 a~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei  271 (458)
                      +++++|+||.|+|..  ...++++++.+.++++++|++.+.++.+.      + +.+.+..+. .+.  -...|.+    
T Consensus        81 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~------~-~~~~~~~~~-r~vg~Hf~~p~~----  148 (287)
T PRK08293         81 AVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS------Q-FAEATGRPE-KFLALHFANEIW----  148 (287)
T ss_pred             HhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH------H-HHhhcCCcc-cEEEEcCCCCCC----
Confidence            889999999999965  57788889989898888887666555442      1 223222210 111  1122221    


Q ss_pred             hccCCeEEEE-ccCCHHHHHHHHHHHhcCCCeEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012720          272 MNKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE  349 (458)
Q Consensus       272 ~~g~~t~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~-~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E  349 (458)
                       ......++. ...+++.++++.++++..|...... .|..+-.                         ...+....++|
T Consensus       149 -~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi-------------------------~nRi~~~~~~e  202 (287)
T PRK08293        149 -KNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYI-------------------------LNSLLVPFLSA  202 (287)
T ss_pred             -cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHh-------------------------HHHHHHHHHHH
Confidence             111111221 2357889999999999999875544 3543211                         12344567788


Q ss_pred             HHHHHHHcCCCcccc
Q 012720          350 IRWLATKMGAKPATI  364 (458)
Q Consensus       350 ~~~la~a~Gi~~~~~  364 (458)
                      ++.+.+.--.+++++
T Consensus       203 a~~l~~~g~a~~~~i  217 (287)
T PRK08293        203 ALALWAKGVADPETI  217 (287)
T ss_pred             HHHHHHcCCCCHHHH
Confidence            888877533456554

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.41  E-value=1e-11  Score=123.76  Aligned_cols=171  Identities=16%  Similarity=0.215  Sum_probs=111.7

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-CCC-ccCCCCCC--------CCceEEeCCH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-CNC-RYFPEQKL--------PENVIATTDA  193 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-~~~-~~~~~~~l--------~~~i~a~~~~  193 (458)
                      |+..+||+|||+|.||..||..|+++|  ++|++||++++.++.+.+.- .+. .+.....+        ..++..+++.
T Consensus         1 ~~~~~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~   78 (292)
T PRK07530          1 MMAIKKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL   78 (292)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH
Confidence            455689999999999999999999999  99999999998877643210 000 00000011        1346677787


Q ss_pred             HhhcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccHH
Q 012720          194 KTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFAL  269 (458)
Q Consensus       194 ~ea~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a~  269 (458)
                      ++ ++++|+||+|+|..  ....++.++.+.++++++|++.+.|+...       .+.+.+..+.  ..+.++ .|....
T Consensus        79 ~~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s-------~la~~~~~~~r~~g~h~~-~p~~~~  149 (292)
T PRK07530         79 ED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT-------RLASATDRPERFIGIHFM-NPVPVM  149 (292)
T ss_pred             HH-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCcccEEEeecc-CCcccC
Confidence            64 78999999999974  35677788989999999988766666542       2333322110  011122 232211


Q ss_pred             HHhccCCeEEEE-ccCCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720          270 ELMNKLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVT  310 (458)
Q Consensus       270 ei~~g~~t~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~~di~  310 (458)
                          +. ..++. .+.+++.++++.++|+..|..+.+..|..
T Consensus       150 ----~~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p  186 (292)
T PRK07530        150 ----KL-VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP  186 (292)
T ss_pred             ----ce-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Confidence                11 11222 24678999999999999998877766654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.40  E-value=9.5e-12  Score=128.16  Aligned_cols=182  Identities=15%  Similarity=0.193  Sum_probs=124.8

Q ss_pred             ccchhhHHhhhhcccccchhhcccc-chhhcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012720           96 DRRKIVKVAWEKLVRWSRTWRSKAK-TDILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (458)
Q Consensus        96 ~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~  173 (458)
                      -+....+.-|..++++++....+.+ ..++..++||+||| +|.||..||..|.++|  ++|++|+|+..          
T Consensus        66 l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G--~~V~~~d~~~~----------  133 (374)
T PRK11199         66 VPPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSG--YQVRILEQDDW----------  133 (374)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCC--CeEEEeCCCcc----------
Confidence            3444456678888877776665543 44554578999999 9999999999999999  99999998531          


Q ss_pred             CCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       174 ~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                                       +++++++.+||+||+|+|.....+++.++.+ ++++++|++++. +-.    .+.+.+.+..+
T Consensus       134 -----------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~~~iv~Dv~S-vK~----~~~~~~~~~~~  190 (374)
T PRK11199        134 -----------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPEDCILVDLTS-VKN----APLQAMLAAHS  190 (374)
T ss_pred             -----------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCCCcEEEECCC-ccH----HHHHHHHHhCC
Confidence                             1445667899999999999888999999988 889999999863 322    12223333322


Q ss_pred             CCCCCEEEEECcccHHHHhccCCeEEEEccC-CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHH
Q 012720          254 NPRQPFIALSGPSFALELMNKLPTAMVVASK-DRKLANAVQQLLASKHLRISTSSDVTGVEIAG  316 (458)
Q Consensus       254 ~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~-d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~k  316 (458)
                      ..+.....+.||....  ..+.  .+++.++ +++.++.+.++++..|.++...+.-..+...+
T Consensus       191 ~~fvg~HPm~G~~~~~--~~~~--~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a  250 (374)
T PRK11199        191 GPVLGLHPMFGPDVGS--LAKQ--VVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMA  250 (374)
T ss_pred             CCEEeeCCCCCCCCcc--cCCC--EEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHH
Confidence            2222233455654321  1222  2344443 56788999999999999988876554444433

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.39  E-value=1.6e-12  Score=129.52  Aligned_cols=170  Identities=19%  Similarity=0.225  Sum_probs=109.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh------cCCC----ccCCCC---CCCCceEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK------HCNC----RYFPEQ---KLPENVIATTDA  193 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~------g~~~----~~~~~~---~l~~~i~a~~~~  193 (458)
                      .+||+|||+|.||..+|..|+++|  ++|++||++++.++...+.      ++..    ......   .+..++..+++.
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~   80 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY   80 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence            468999999999999999999999  9999999999887654321      1100    000000   012345566676


Q ss_pred             HhhcCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCE-EEEECcccHHH
Q 012720          194 KTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF-IALSGPSFALE  270 (458)
Q Consensus       194 ~ea~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~-~vl~gP~~a~e  270 (458)
                       ++++++|+||+|+|.+.  ..+++.++.+.+++++++++.++|+...       .+.+.+..+..-+ .....|.... 
T Consensus        81 -~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~-------~la~~~~~~~r~ig~hf~~P~~~~-  151 (291)
T PRK06035         81 -ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA-------EIATALERKDRFIGMHWFNPAPVM-  151 (291)
T ss_pred             -HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHH-------HHHhhcCCcccEEEEecCCCcccC-
Confidence             46799999999999764  6778888988899999999888887653       2223322210000 1111222111 


Q ss_pred             HhccCCeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720          271 LMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTG  311 (458)
Q Consensus       271 i~~g~~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~  311 (458)
                         +.. .++.+ .-+++.++++.++++..|..+....|..+
T Consensus       152 ---~~v-Ev~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pg  189 (291)
T PRK06035        152 ---KLI-EVVRAALTSEETFNTTVELSKKIGKIPIEVADVPG  189 (291)
T ss_pred             ---ccE-EEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence               011 11111 13688999999999999988887766543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.39  E-value=1.3e-11  Score=123.79  Aligned_cols=162  Identities=17%  Similarity=0.205  Sum_probs=110.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.||..+|..|.++|..++|++|+|+++..+.+++.|..            .....+.+++++++|+||+|
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~------------~~~~~~~~~~~~~aDvViia   73 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG------------DRVTTSAAEAVKGADLVILC   73 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC------------ceecCCHHHHhcCCCEEEEC
Confidence            468999999999999999999988334899999999888777665421            12334666778899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEEC----------cccHH-HHhccC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSG----------PSFAL-ELMNKL  275 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~g----------P~~a~-ei~~g~  275 (458)
                      +|.....++++++.+.++++++|+++. ++...    ..+.+.+.++.   .+.++.+          |..+. +...|.
T Consensus        74 vp~~~~~~v~~~l~~~l~~~~iv~dvg-s~k~~----~~~~~~~~~~~---~~~~v~~hPm~g~e~~G~~~a~~~l~~g~  145 (307)
T PRK07502         74 VPVGASGAVAAEIAPHLKPGAIVTDVG-SVKAS----VIAAMAPHLPE---GVHFIPGHPLAGTEHSGPDAGFAELFENR  145 (307)
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEeCc-cchHH----HHHHHHHhCCC---CCeEEeCCCCCCCcccchhhcCHHHHCCC
Confidence            999888999999988888888887764 33322    12223332221   1122322          22111 223343


Q ss_pred             CeEEEE-ccCCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720          276 PTAMVV-ASKDRKLANAVQQLLASKHLRISTSSD  308 (458)
Q Consensus       276 ~t~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~~d  308 (458)
                      ...+.. .+.+.+.++.+.++|+..|.+++..+.
T Consensus       146 ~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~  179 (307)
T PRK07502        146 WCILTPPEGTDPAAVARLTAFWRALGARVEEMDP  179 (307)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            332222 245678899999999999998877543

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.38  E-value=2.7e-11  Score=120.03  Aligned_cols=197  Identities=15%  Similarity=0.196  Sum_probs=125.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH-----------HHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS-----------INEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~-----------l~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      ++||+|||+|.||..+|..|+++|  ++|++||++++.++.           +.+.|..... .......+++.+++.++
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~-~~~~~~~~l~~~~~~~~   79 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA-DKEAALARITGTTDLDD   79 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH
Confidence            568999999999999999999999  999999999987753           2222210000 00001124667778765


Q ss_pred             hcCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhc
Q 012720          196 ALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMN  273 (458)
Q Consensus       196 a~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~  273 (458)
                       +++||+||+|+|.+.  ..+++.++.++++++++|++.+.|+...       .+.+.++.+. . .+..-|..+.++..
T Consensus        80 -~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~-------~la~~~~~~~-r-~ig~h~~~P~~~~~  149 (282)
T PRK05808         80 -LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT-------ELAAATKRPD-K-VIGMHFFNPVPVMK  149 (282)
T ss_pred             -hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHHhhCCCc-c-eEEeeccCCcccCc
Confidence             789999999999643  3688899999999999998888777653       2333333211 1 11111222222111


Q ss_pred             cCCeEEEE-ccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHH
Q 012720          274 KLPTAMVV-ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW  352 (458)
Q Consensus       274 g~~t~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~  352 (458)
                      +. . ++. .+.+++..+.+.++|+..|..+....|..+..                         ...++...++|+..
T Consensus       150 ~v-e-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i-------------------------~~Ri~~~~~~ea~~  202 (282)
T PRK05808        150 LV-E-IIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFV-------------------------VNRILIPMINEAIF  202 (282)
T ss_pred             cE-E-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChH-------------------------HHHHHHHHHHHHHH
Confidence            11 1 222 23578999999999999998887766654311                         12345567788888


Q ss_pred             HHHHcCC-Ccccc
Q 012720          353 LATKMGA-KPATI  364 (458)
Q Consensus       353 la~a~Gi-~~~~~  364 (458)
                      +.+. |+ +++++
T Consensus       203 ~~~~-gv~~~~di  214 (282)
T PRK05808        203 VLAE-GVATAEDI  214 (282)
T ss_pred             HHHh-CCCCHHHH
Confidence            7764 43 44443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.37  E-value=5.6e-11  Score=118.58  Aligned_cols=170  Identities=17%  Similarity=0.249  Sum_probs=108.2

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-----------hhcCCCccCCCCCCCCceEEeCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-----------EKHCNCRYFPEQKLPENVIATTD  192 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~-----------~~g~~~~~~~~~~l~~~i~a~~~  192 (458)
                      |+.++||+|||+|.||..||..|+.+|  ++|++||++++.++...           +.|.-..... ......+...++
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~   77 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEA-DATLGRIRCTTN   77 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHhceEeeCC
Confidence            445678999999999999999999999  99999999998765322           2221000000 000112445556


Q ss_pred             HHhhcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccH
Q 012720          193 AKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFA  268 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a  268 (458)
                      .+ ++++||+||+|||.  .....++.++.+.++++++|++.+.|+.+.+       +.+.++.+.  ..+.+...|.. 
T Consensus        78 ~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~-------l~~~~~~~~r~~g~h~~~pp~~-  148 (295)
T PLN02545         78 LE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITR-------LASATQRPQQVIGMHFMNPPPI-  148 (295)
T ss_pred             HH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCcceEEEeccCCccc-
Confidence            64 57999999999994  4466677888888999998887666776532       223222210  11112222211 


Q ss_pred             HHHhccCCeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720          269 LELMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVT  310 (458)
Q Consensus       269 ~ei~~g~~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~  310 (458)
                           +....++.+ ..+++.+++++++|+..|..+.+..|..
T Consensus       149 -----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~  186 (295)
T PLN02545        149 -----MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP  186 (295)
T ss_pred             -----CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence                 122222222 2478899999999999998887766643

>PLN02256 arogenate dehydrogenase

Probab=99.37  E-value=3.9e-11  Score=120.07  Aligned_cols=211  Identities=14%  Similarity=0.099  Sum_probs=127.0

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADY  202 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDi  202 (458)
                      .+++|||+|||+|.||..+|..|.+.|  ++|++|+++... +...+.|              +...++.++++ .++|+
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G--~~V~~~d~~~~~-~~a~~~g--------------v~~~~~~~e~~~~~aDv   95 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQG--HTVLATSRSDYS-DIAAELG--------------VSFFRDPDDFCEEHPDV   95 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECccHH-HHHHHcC--------------CeeeCCHHHHhhCCCCE
Confidence            345689999999999999999999988  899999998642 2233222              22345777765 47999


Q ss_pred             EEEcCccccHHHHHHhh-hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEE
Q 012720          203 CLHAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAM  279 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i-~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t~v  279 (458)
                      ||+|||...+.++++++ .+.++++++|+++..+=     ....+.+.+.++..  +.....+.|+........+..  +
T Consensus        96 Vilavp~~~~~~vl~~l~~~~l~~~~iviDv~SvK-----~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~--~  168 (304)
T PLN02256         96 VLLCTSILSTEAVLRSLPLQRLKRSTLFVDVLSVK-----EFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP--F  168 (304)
T ss_pred             EEEecCHHHHHHHHHhhhhhccCCCCEEEecCCch-----HHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe--E
Confidence            99999999999999998 67788999999987421     12234455544321  111111223332211122222  1


Q ss_pred             EEc-------cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHH---HHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012720          280 VVA-------SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE  349 (458)
Q Consensus       280 ~i~-------g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~ka---lkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E  349 (458)
                      ++.       ..+++..+.+.++++..|.++...+--..++...+   +.++++.+.  .... ..   ...+...++..
T Consensus       169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L--~~~~-~~---~~~~~~~gfrd  242 (304)
T PLN02256        169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRIL--GKME-LE---STPINTKGYET  242 (304)
T ss_pred             EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHH--HHcC-Cc---ccccccccHHH
Confidence            122       23567889999999999999887665444444332   233332221  1111 00   12344456677


Q ss_pred             HHHHHHHc-CCCcccc
Q 012720          350 IRWLATKM-GAKPATI  364 (458)
Q Consensus       350 ~~~la~a~-Gi~~~~~  364 (458)
                      +.+++.+. ..+|+.+
T Consensus       243 ~tria~r~~~~~p~lw  258 (304)
T PLN02256        243 LLRLVENTSSDSFDLY  258 (304)
T ss_pred             HHHHHHhhcCCCHHHH
Confidence            77777532 3445433

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.36  E-value=8.5e-12  Score=127.92  Aligned_cols=164  Identities=17%  Similarity=0.233  Sum_probs=107.5

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      +||+|||+|.||..||..|.++|  ++|.+|++++...+.....+....          -..+++.++++++||+||+||
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARALGFGVI----------DELAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHhcCCCC----------cccccCHHHHhcCCCEEEEeC
Confidence            47999999999999999999999  899999988765544443332110          013346777889999999999


Q ss_pred             ccccHHHHHHhhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEEC-----cccHH-HHhccCCeE
Q 012720          208 PVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSG-----PSFAL-ELMNKLPTA  278 (458)
Q Consensus       208 p~~~v~~vl~~i~~-~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~g-----P~~a~-ei~~g~~t~  278 (458)
                      |...+.++++++.+ .++++++|.++. ++...    +.+.+.+.++..  +.....+.|     +..+. .+..+..+.
T Consensus        69 P~~~~~~vl~~l~~~~l~~~~ivtDv~-SvK~~----i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~i  143 (359)
T PRK06545         69 PVDATAALLAELADLELKPGVIVTDVG-SVKGA----ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWV  143 (359)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcEEEeCc-cccHH----HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEE
Confidence            99999999999987 478887777665 44322    223333332211  001011222     22222 334555554


Q ss_pred             EEEcc-CCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720          279 MVVAS-KDRKLANAVQQLLASKHLRISTSSD  308 (458)
Q Consensus       279 v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~d  308 (458)
                      ++... .+.+.++.++++|+..|..+...+.
T Consensus       144 l~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~  174 (359)
T PRK06545        144 LTPDDHTDPDAVAELKDLLSGTGAKFVVLDA  174 (359)
T ss_pred             EecCCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence            43332 4678899999999999988865543

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.35  E-value=3e-11  Score=121.43  Aligned_cols=149  Identities=14%  Similarity=0.136  Sum_probs=104.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l-~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||+|+||.++|.+|.+.|  ++|++++++....... .+.|              +... +.+++++.+|+|++
T Consensus        17 gktIgIIG~GsmG~AlA~~L~~sG--~~Vvv~~r~~~~s~~~A~~~G--------------~~~~-s~~eaa~~ADVVvL   79 (330)
T PRK05479         17 GKKVAIIGYGSQGHAHALNLRDSG--VDVVVGLREGSKSWKKAEADG--------------FEVL-TVAEAAKWADVIMI   79 (330)
T ss_pred             CCEEEEEeeHHHHHHHHHHHHHCC--CEEEEEECCchhhHHHHHHCC--------------CeeC-CHHHHHhcCCEEEE
Confidence            478999999999999999999999  8999988775433322 2223              2233 77888999999999


Q ss_pred             cCccccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-------HhccCCe
Q 012720          206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-------LMNKLPT  277 (458)
Q Consensus       206 aVp~~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e-------i~~g~~t  277 (458)
                      +||.....+++ +++.+.++++++| ++..|+....       .....+.. .+ .++..|+.+.+       .+.|.+.
T Consensus        80 aVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~-------~~~~p~~~-~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~  149 (330)
T PRK05479         80 LLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF-------GQIVPPAD-VD-VIMVAPKGPGHLVRREYEEGGGVPC  149 (330)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh-------ceeccCCC-Cc-EEEeCCCCCchhhhhhhhcCCCceE
Confidence            99998889998 7799999999887 5555877542       22222221 22 45566776655       4455544


Q ss_pred             EEEEcc-CCHHHHHHHHHHHhcCCCe
Q 012720          278 AMVVAS-KDRKLANAVQQLLASKHLR  302 (458)
Q Consensus       278 ~v~i~g-~d~e~~e~l~~lL~~~g~~  302 (458)
                      .+.+.. .+.+..+.+..++...|..
T Consensus       150 l~av~~d~t~~a~~~a~~l~~aiG~~  175 (330)
T PRK05479        150 LIAVHQDASGNAKDLALAYAKGIGGT  175 (330)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence            331222 2367788889999877655

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.34  E-value=6.6e-11  Score=126.36  Aligned_cols=196  Identities=18%  Similarity=0.182  Sum_probs=126.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l-----------~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      .+||+|||+|.||..||..|+++|  ++|++||++++.+++.           .+.|.-... .....-..+..++++++
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE-QADAALARLRPVEALAD   83 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH
Confidence            468999999999999999999999  9999999999987763           222210000 00001124677788876


Q ss_pred             hcCCCCEEEEcCcc-ccHHH-HHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHH
Q 012720          196 ALLGADYCLHAMPV-QFSSS-FLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALEL  271 (458)
Q Consensus       196 a~~~aDiVilaVp~-~~v~~-vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei  271 (458)
                       +.+||+||.||+. ..++. ++.++...+++++++.+.+.++.+.       .+.+.+..+  .....+ ..|....  
T Consensus        84 -~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~-------~la~~~~~p~r~~G~hf-f~Pa~v~--  152 (507)
T PRK08268         84 -LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT-------AIAAALKHPERVAGLHF-FNPVPLM--  152 (507)
T ss_pred             -hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCcccEEEEee-cCCcccC--
Confidence             5799999999996 34554 4466777788888887655577764       133332221  011222 2332221  


Q ss_pred             hccCCeEEEEcc---CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720          272 MNKLPTAMVVAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS  348 (458)
Q Consensus       272 ~~g~~t~v~i~g---~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~  348 (458)
                           ..+.+.+   .+++.++++.++++..|....+..|..|-     +.|                    .++...++
T Consensus       153 -----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N--------------------rll~~~~~  202 (507)
T PRK08268        153 -----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGF-----IVN--------------------RAARPYYT  202 (507)
T ss_pred             -----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCCh-----HHH--------------------HHHHHHHH
Confidence                 1233333   47899999999999999887776664331     111                    12234778


Q ss_pred             HHHHHHHHcCCCcccccc
Q 012720          349 EIRWLATKMGAKPATITG  366 (458)
Q Consensus       349 E~~~la~a~Gi~~~~~~~  366 (458)
                      |+..+++..|++++++.+
T Consensus       203 Ea~~l~~~g~~~~~~iD~  220 (507)
T PRK08268        203 EALRVLEEGVADPATIDA  220 (507)
T ss_pred             HHHHHHHcCCCCHHHHHH
Confidence            888888887787766554

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.34  E-value=1.6e-10  Score=116.00  Aligned_cols=149  Identities=16%  Similarity=0.191  Sum_probs=106.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~-~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+||+|||+|+||.++|..|.+.|  ++|+++++. .+..+.+.+.|              +... +..++++++|+|++
T Consensus         3 ~kkIgiIG~G~mG~AiA~~L~~sG--~~Viv~~~~~~~~~~~a~~~G--------------v~~~-s~~ea~~~ADiVvL   65 (314)
T TIGR00465         3 GKTVAIIGYGSQGHAQALNLRDSG--LNVIVGLRKGGASWKKATEDG--------------FKVG-TVEEAIPQADLIMN   65 (314)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCC--CeEEEEECcChhhHHHHHHCC--------------CEEC-CHHHHHhcCCEEEE
Confidence            478999999999999999999999  888876654 34445554433              2333 56778899999999


Q ss_pred             cCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-H------hccCCe
Q 012720          206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-L------MNKLPT  277 (458)
Q Consensus       206 aVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e-i------~~g~~t  277 (458)
                      +||++ +...+++++.+.++++. +|++.-|+...       .+...++.. . -.++..|+.+.+ +      +.|.+.
T Consensus        66 aVpp~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~-------~~~~~~~~~-~-~VvrvmPn~p~~~vr~~~~~G~G~~~  135 (314)
T TIGR00465        66 LLPDEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIH-------FVQIVPPKD-V-DVVMVAPKGPGTLVREEYKEGFGVPT  135 (314)
T ss_pred             eCCcHhHHHHHHHHHHhhCCCCc-EEEEeCCccHh-------hccccCCCC-C-cEEEECCCCCcHHHHHHhhcCCCeeE
Confidence            99988 67767778988888775 78888898864       233444431 1 257788888876 3      556544


Q ss_pred             EEEEc-cCCHHHHHHHHHHHhcCCCe
Q 012720          278 AMVVA-SKDRKLANAVQQLLASKHLR  302 (458)
Q Consensus       278 ~v~i~-g~d~e~~e~l~~lL~~~g~~  302 (458)
                      .+.+. ..+.+..+.+..+|+..|..
T Consensus       136 l~a~~~~~~~~~~~~~~~~~~~iG~~  161 (314)
T TIGR00465       136 LIAVEQDPTGEAMAIALAYAKAIGGG  161 (314)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCC
Confidence            32122 23567778899999987755

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.34  E-value=4.3e-11  Score=120.38  Aligned_cols=198  Identities=15%  Similarity=0.165  Sum_probs=124.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh---cC---CCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---HC---NCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~---g~---~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      .+||+|||+|.||..||..|+.+|  ++|++||++++..+++.+.   ..   ....+.....+..+..++++++++++|
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a   84 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA   84 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC
Confidence            478999999999999999999999  9999999998766544321   00   000000111234567778998889999


Q ss_pred             CEEEEcCccc-c-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHHhccCC
Q 012720          201 DYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALELMNKLP  276 (458)
Q Consensus       201 DiVilaVp~~-~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei~~g~~  276 (458)
                      |+||.|+|.. . ...++.++.+.++++++|.+.+.++...       .+.+.+..+. .+.  -...|.+...     .
T Consensus        85 DlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s-------~la~~~~~p~-R~~g~HffnP~~~~p-----L  151 (321)
T PRK07066         85 DFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT-------DFYARATHPE-RCVVGHPFNPVYLLP-----L  151 (321)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHH-------HHHHhcCCcc-cEEEEecCCccccCc-----e
Confidence            9999999963 3 5566688999999999776666555432       2333333221 111  2234433221     1


Q ss_pred             eEEEEcc-CCHHHHHHHHHHHhcCCCeEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Q 012720          277 TAMVVAS-KDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA  354 (458)
Q Consensus       277 t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~-~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la  354 (458)
                      ..++.+. -+++.++++.+++...|...... .|+.|-.     .                    ..+....++|++.+.
T Consensus       152 VEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi-----~--------------------NRl~~a~~~EA~~lv  206 (321)
T PRK07066        152 VEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFI-----A--------------------DRLLEALWREALHLV  206 (321)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHH-----H--------------------HHHHHHHHHHHHHHH
Confidence            1122222 36889999999999999776554 4654311     1                    123445677777776


Q ss_pred             HHcCCCcccc
Q 012720          355 TKMGAKPATI  364 (458)
Q Consensus       355 ~a~Gi~~~~~  364 (458)
                      +.-..+++++
T Consensus       207 ~eGvas~edI  216 (321)
T PRK07066        207 NEGVATTGEI  216 (321)
T ss_pred             HhCCCCHHHH
Confidence            6543555544

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.34  E-value=4.5e-11  Score=127.34  Aligned_cols=196  Identities=15%  Similarity=0.147  Sum_probs=126.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~-----------~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      .+||+|||+|.||..||..|+++|  ++|++||++++.+++..+           .|.-... .......+++.++++++
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~   81 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE-ECERTLKRLIPVTDLHA   81 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHhccEEeCCHHH
Confidence            468999999999999999999999  999999999988765322           1210000 00011235677888876


Q ss_pred             hcCCCCEEEEcCcc-cc-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHH
Q 012720          196 ALLGADYCLHAMPV-QF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALEL  271 (458)
Q Consensus       196 a~~~aDiVilaVp~-~~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei  271 (458)
                       +.+||+||.|++. .+ ...++.++.+.++++++|.+.+.++.+.   .    +.+.+..+  ...+.+ ..|....  
T Consensus        82 -l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~---~----iA~~~~~p~r~~G~HF-f~Papv~--  150 (503)
T TIGR02279        82 -LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSIT---A----IAAGLARPERVAGLHF-FNPAPVM--  150 (503)
T ss_pred             -hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH---H----HHHhcCcccceEEEec-cCccccC--
Confidence             5799999999996 34 4445667888888888877666566553   1    22322221  111112 2222211  


Q ss_pred             hccCCeEEEEccC---CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720          272 MNKLPTAMVVASK---DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS  348 (458)
Q Consensus       272 ~~g~~t~v~i~g~---d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~  348 (458)
                           ..+.+.++   +++.++++.++++..|....+..|..|-     +.|                    .++...++
T Consensus       151 -----~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~N--------------------rl~~~~~~  200 (503)
T TIGR02279       151 -----ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVN--------------------RVARPYYA  200 (503)
T ss_pred             -----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHH--------------------HHHHHHHH
Confidence                 13344444   7899999999999999888776664431     111                    12245778


Q ss_pred             HHHHHHHHcCCCcccccc
Q 012720          349 EIRWLATKMGAKPATITG  366 (458)
Q Consensus       349 E~~~la~a~Gi~~~~~~~  366 (458)
                      |+..+++..+++++++..
T Consensus       201 EA~~l~e~g~a~~~~ID~  218 (503)
T TIGR02279       201 EALRALEEQVAAPAVLDA  218 (503)
T ss_pred             HHHHHHHcCCCCHHHHHH
Confidence            888888888887766544

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=7.7e-11  Score=117.94  Aligned_cols=209  Identities=12%  Similarity=0.132  Sum_probs=142.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---hcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a~~~aDiV  203 (458)
                      .+.||+||+|.||.-+|.+.+++|  +.|.+|+|+.++.+.+.++....+         ++..+.+++|   .++...-|
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G--~~VavyNRt~~ktd~f~~~~~~~k---------~i~~~~sieefV~~Le~PRkI   71 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHG--YTVAVYNRTTEKTDEFLAERAKGK---------NIVPAYSIEEFVASLEKPRKI   71 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcC--ceEEEEeCCHHHHHHHHHhCccCC---------CccccCcHHHHHHHhcCCceE
Confidence            467999999999999999999999  999999999999999877543211         2333345554   46788999


Q ss_pred             EEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECccc-HHHHhccCCeEEEE
Q 012720          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF-ALELMNKLPTAMVV  281 (458)
Q Consensus       204 ilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~-a~ei~~g~~t~v~i  281 (458)
                      +++|++ ..++.++++|++++.+|.+||+-.|....+|.++..+.- +. |     +.++..-.. +++.+...|+  ++
T Consensus        72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~-~~-G-----i~FvG~GVSGGEeGA~~GPS--iM  142 (473)
T COG0362          72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELS-EK-G-----ILFVGMGVSGGEEGARHGPS--IM  142 (473)
T ss_pred             EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHH-hc-C-----CeEEeccccccccccccCCC--cC
Confidence            999998 678999999999999999999999988888765544332 22 3     223322222 2333333454  45


Q ss_pred             ccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH-cCCC
Q 012720          282 ASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK-MGAK  360 (458)
Q Consensus       282 ~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a-~Gi~  360 (458)
                      .|++++..+.++++|.+..-++.  ++. ...|-+        .-|...=+|..+|-.---=.+.++|+..+.+. +|.+
T Consensus       143 pGG~~eay~~v~pil~~IaAk~~--g~p-Cc~~iG--------~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls  211 (473)
T COG0362         143 PGGQKEAYELVAPILTKIAAKVD--GEP-CCTWIG--------PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLS  211 (473)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcC--CCC-ceeeEC--------CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCC
Confidence            67789999999999985432221  111 000100        01334445666665555557889999999988 7887


Q ss_pred             cccccc
Q 012720          361 PATITG  366 (458)
Q Consensus       361 ~~~~~~  366 (458)
                      .+.+.+
T Consensus       212 ~~ei~~  217 (473)
T COG0362         212 AEEIAE  217 (473)
T ss_pred             HHHHHH
Confidence            665543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.29  E-value=1.3e-10  Score=114.77  Aligned_cols=172  Identities=15%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH-HhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA-KTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~-~ea~~~aDiVil  205 (458)
                      +++|+|+|+|.||..||+.|.++|  +.|.+++++...........+...+          ..+.+. .+++.++|+||+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g--~~v~i~g~d~~~~~~~~a~~lgv~d----------~~~~~~~~~~~~~aD~Viv   70 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAG--LVVRIIGRDRSAATLKAALELGVID----------ELTVAGLAEAAAEADLVIV   70 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcC--CeEEEEeecCcHHHHHHHhhcCccc----------ccccchhhhhcccCCEEEE
Confidence            589999999999999999999999  8887777665433322222222111          111232 456778999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--CCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--PRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~--~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      |||-..+.++++++.+.+++|++|++++. +    ...+.+.+.+..+.  ...+...+.||..-.+...+....+....
T Consensus        71 avPi~~~~~~l~~l~~~l~~g~iv~Dv~S-~----K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~  145 (279)
T COG0287          71 AVPIEATEEVLKELAPHLKKGAIVTDVGS-V----KSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSE  145 (279)
T ss_pred             eccHHHHHHHHHHhcccCCCCCEEEeccc-c----cHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCC
Confidence            99999999999999999999999998873 1    12334555555433  11222234566301122233332222222


Q ss_pred             -CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHH
Q 012720          284 -KDRKLANAVQQLLASKHLRISTSSDVTGVEIA  315 (458)
Q Consensus       284 -~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~  315 (458)
                       .+.+.++++.++++..|-++...+.-..+...
T Consensus       146 ~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~  178 (279)
T COG0287         146 GTEKEWVEEVKRLWEALGARLVEMDAEEHDRVM  178 (279)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHH
Confidence             34678999999999999888877654444433

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.28  E-value=3.8e-10  Score=111.50  Aligned_cols=208  Identities=16%  Similarity=0.136  Sum_probs=126.9

Q ss_pred             CeEEEECcchH--------------------HHHHHHHHHhcCCCCeEEEEeCCHHHH-----HHHHhhcCCCccCCCCC
Q 012720          128 NKVVVLGGGSF--------------------GTAMAAHVANKKSQLKVYMLMRDPAVC-----QSINEKHCNCRYFPEQK  182 (458)
Q Consensus       128 ~kI~IIGaG~m--------------------G~~iA~~La~aG~~~~V~v~~r~~~~~-----e~l~~~g~~~~~~~~~~  182 (458)
                      |||.|.|+|+-                    |.+||.+|+++|  |+|++|||+++.+     +.+.+.|          
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAG--heV~V~Drnrsa~e~e~~e~LaeaG----------   68 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAG--HDVVLAEPNREFMSDDLWKKVEDAG----------   68 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhHHHHHCC----------
Confidence            68999999873                    889999999999  9999999987654     3455544          


Q ss_pred             CCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh--CCCCCCE
Q 012720          183 LPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL--RNPRQPF  259 (458)
Q Consensus       183 l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~l--g~~~~~~  259 (458)
                          +..++++.++++++|+||+|+|.. ++++++.++.+.+++|++||+++ ++++++.   ...+++.+  ++.  ++
T Consensus        69 ----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~S-TIsP~t~---~~~~e~~l~~~r~--d~  138 (341)
T TIGR01724        69 ----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTC-TVSPVVL---YYSLEKILRLKRT--DV  138 (341)
T ss_pred             ----CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECC-CCCHHHH---HHHHHHHhhcCcc--cc
Confidence                346668889999999999999964 58899888999999999999998 6777543   33343322  221  12


Q ss_pred             EEEEC-----cccHHH---HhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHH--HHHHHHHHHHHHHHH
Q 012720          260 IALSG-----PSFALE---LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS-DVTGVE--IAGALKNVLAIAAGI  328 (458)
Q Consensus       260 ~vl~g-----P~~a~e---i~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~--~~kalkNi~ai~~G~  328 (458)
                      .+.+-     |+...+   +..|... .--+-.+++..+++.++.++.+...+..+ |+.+..  .+.++--+  ...|+
T Consensus       139 ~v~s~HP~~vP~~~~~~~~~~~~~~~-~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta~--~~~gi  215 (341)
T TIGR01724       139 GISSMHPAAVPGTPQHGHYVIGGKPT-AGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTAV--ALAGV  215 (341)
T ss_pred             CeeccCCCCCCCCCCCceeeeccccc-cccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHH--HHHHH
Confidence            22111     221111   0011110 00111468899999999999887766543 333221  12211110  01233


Q ss_pred             Hhcc----c-CCCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012720          329 VVGM----N-LGNN--SMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       329 ~~~~----k-l~~n--~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      ++=.    + ++..  ..-..+...+.-+..+-+..|++
T Consensus       216 l~y~~~~t~i~~ap~~~~~~~~~~~l~~~a~l~~~~Gi~  254 (341)
T TIGR01724       216 LDYYYVGTQIINAPKEMIEKQILMTLQTMASLVETSGVE  254 (341)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            2111    1 2222  22344556666777788888876

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.27  E-value=5.4e-11  Score=118.25  Aligned_cols=197  Identities=14%  Similarity=0.163  Sum_probs=121.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-----------HhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI-----------NEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l-----------~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      +.||+|||+|.||..||..|+.+|  ++|++||++++.+++.           .+.|.-..- .......+++.+++++ 
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~-   80 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER-ERDAALARLRFTTDLG-   80 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChh-hHHHHHhCeEeeCCHH-
Confidence            458999999999999999999999  9999999999887662           222211000 0001123567788885 


Q ss_pred             hcCCCCEEEEcCccc-c-HHHHHHhhhhcC-CCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHH
Q 012720          196 ALLGADYCLHAMPVQ-F-SSSFLEGISDYV-DPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALEL  271 (458)
Q Consensus       196 a~~~aDiVilaVp~~-~-v~~vl~~i~~~l-~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~-~~vl~gP~~a~ei  271 (458)
                      ++++||+||.|+|.. . ...++..+.+.+ ++++++++.+.++....       +......+..- ......|.+..  
T Consensus        81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~-------la~~~~~~~r~~g~hf~~P~~~~--  151 (286)
T PRK07819         81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK-------LAAATKRPGRVLGLHFFNPVPVL--  151 (286)
T ss_pred             HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHhhcCCCccEEEEecCCCcccC--
Confidence            479999999999963 3 445556777777 78999988886665531       22222211010 01122332221  


Q ss_pred             hccCCeEEEEccCCHHHHHHHHHHHh-cCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720          272 MNKLPTAMVVASKDRKLANAVQQLLA-SKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI  350 (458)
Q Consensus       272 ~~g~~t~v~i~g~d~e~~e~l~~lL~-~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~  350 (458)
                        +....+.....+++.++++.+++. ..|..+....|..|-.                         ...+....++|+
T Consensus       152 --~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi-------------------------~nRi~~~~~~Ea  204 (286)
T PRK07819        152 --PLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFV-------------------------VNALLVPYLLSA  204 (286)
T ss_pred             --ceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCChH-------------------------HHHHHHHHHHHH
Confidence              111222223457899999999987 4787766555543211                         123445677888


Q ss_pred             HHHHHHcCC-Ccccc
Q 012720          351 RWLATKMGA-KPATI  364 (458)
Q Consensus       351 ~~la~a~Gi-~~~~~  364 (458)
                      .++.+ .|+ +++++
T Consensus       205 ~~ll~-eGv~~~~dI  218 (286)
T PRK07819        205 IRMVE-SGFATAEDI  218 (286)
T ss_pred             HHHHH-hCCCCHHHH
Confidence            88776 453 44443

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.20  E-value=3.4e-11  Score=105.00  Aligned_cols=96  Identities=26%  Similarity=0.298  Sum_probs=67.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+||+|||+|++|..++..|.++|  |.|.. |+|+.+..+.+...-      ++       ....+++|.+.++|++|+
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag--~~v~~v~srs~~sa~~a~~~~------~~-------~~~~~~~~~~~~aDlv~i   74 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAG--HEVVGVYSRSPASAERAAAFI------GA-------GAILDLEEILRDADLVFI   74 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTT--SEEEEESSCHH-HHHHHHC--------TT------------TTGGGCC-SEEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCCccccccccccc------cc-------ccccccccccccCCEEEE
Confidence            589999999999999999999999  88875 578887766665421      11       122356678899999999


Q ss_pred             cCccccHHHHHHhhhhc--CCCCCeEEEeccCCC
Q 012720          206 AMPVQFSSSFLEGISDY--VDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~--l~~~~ivV~~snGi~  237 (458)
                      +||++.+.+++++|...  ..++++|+.++-.++
T Consensus        75 avpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~  108 (127)
T PF10727_consen   75 AVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG  108 (127)
T ss_dssp             -S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred             EechHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence            99999999999999877  788999999993333

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.20  E-value=3.7e-10  Score=126.24  Aligned_cols=164  Identities=16%  Similarity=0.122  Sum_probs=109.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.||.++|..|.++|..++|++|+|+++.++.+.+.|...            ...++.+++++++|+||+|
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~------------~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID------------RGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC------------cccCCHHHHhcCCCEEEEC
Confidence            3689999999999999999999883358999999998877766654310            1234667778899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC---EEEEECccc-----HH-HHhccCCe
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP---FIALSGPSF-----AL-ELMNKLPT  277 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~---~~vl~gP~~-----a~-ei~~g~~t  277 (458)
                      ||.+.+.++++++.++++++++|++++ ++....    .+.+.+.++.....   ...+.|+..     +. +...+...
T Consensus        71 vp~~~~~~vl~~l~~~~~~~~ii~d~~-svk~~~----~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~  145 (735)
T PRK14806         71 VPVLAMEKVLADLKPLLSEHAIVTDVG-STKGNV----VDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKV  145 (735)
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEcC-CCchHH----HHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeE
Confidence            999999999999999888888777776 444322    23333333321000   011122221     11 22234333


Q ss_pred             EEEE-ccCCHHHHHHHHHHHhcCCCeEEEcC
Q 012720          278 AMVV-ASKDRKLANAVQQLLASKHLRISTSS  307 (458)
Q Consensus       278 ~v~i-~g~d~e~~e~l~~lL~~~g~~v~~~~  307 (458)
                      .+.. ...+++..+.+.++|+..|.++...+
T Consensus       146 ~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~  176 (735)
T PRK14806        146 ILTPLAETDPAALARVDRLWRAVGADVLHMD  176 (735)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            3333 23567788999999999998776654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.19  E-value=3e-10  Score=105.32  Aligned_cols=165  Identities=20%  Similarity=0.289  Sum_probs=102.1

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-------CccCCC---CCCCCceEEeCCHHhhcC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-------CRYFPE---QKLPENVIATTDAKTALL  198 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~-------~~~~~~---~~l~~~i~a~~~~~ea~~  198 (458)
                      ||+|||+|.||..+|..++.+|  ++|++||++++.++...+.-..       ...+..   .....++..++|++++. 
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-   77 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-   77 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred             CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence            7999999999999999999999  9999999999876544331000       000000   01124678889999876 


Q ss_pred             CCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHHhccC
Q 012720          199 GADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALELMNKL  275 (458)
Q Consensus       199 ~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~-~~vl~gP~~a~ei~~g~  275 (458)
                      ++|+||-|+|.  ....+++.++...+++++++.+.+.++...       .+.+.++.+..- ..-...|.+...     
T Consensus        78 ~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~-------~la~~~~~p~R~ig~Hf~~P~~~~~-----  145 (180)
T PF02737_consen   78 DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS-------ELAAALSRPERFIGMHFFNPPHLMP-----  145 (180)
T ss_dssp             TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH-------HHHTTSSTGGGEEEEEE-SSTTT-------
T ss_pred             hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH-------HHHhccCcCceEEEEecccccccCc-----
Confidence            99999999996  457888899999999999998888777654       233333322111 112334543321     


Q ss_pred             CeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720          276 PTAMVVAS-KDRKLANAVQQLLASKHLRISTSSD  308 (458)
Q Consensus       276 ~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~d  308 (458)
                      ...++.+. -+++.++++..++...|.......|
T Consensus       146 lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D  179 (180)
T PF02737_consen  146 LVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD  179 (180)
T ss_dssp             EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence            11222332 4678999999999999988766544

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PLN02712 arogenate dehydrogenase

Probab=99.15  E-value=2.9e-09  Score=117.06  Aligned_cols=165  Identities=13%  Similarity=0.136  Sum_probs=108.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil  205 (458)
                      +|||+|||+|.||..+|..|.++|  ++|++|+|+... +...+.|              +...++.++++ .++|+||+
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~-~~A~~~G--------------v~~~~d~~e~~~~~aDvViL  114 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQG--HTVLAHSRSDHS-LAARSLG--------------VSFFLDPHDLCERHPDVILL  114 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHH-HHHHHcC--------------CEEeCCHHHHhhcCCCEEEE
Confidence            579999999999999999999998  999999998543 3333322              23455777744 56999999


Q ss_pred             cCccccHHHHHHhhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          206 AMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       206 aVp~~~v~~vl~~i~-~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |||...+.++++++. +.++++++|+++. ++-    ..+.+.+.+.++..  +.....+.||........+..  .++.
T Consensus       115 avP~~~~~~vl~~l~~~~l~~g~iVvDv~-SvK----~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~--~~~~  187 (667)
T PLN02712        115 CTSIISTENVLKSLPLQRLKRNTLFVDVL-SVK----EFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR--FVYE  187 (667)
T ss_pred             cCCHHHHHHHHHhhhhhcCCCCeEEEECC-CCc----HHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc--EEEe
Confidence            999999999999885 6788899999986 222    23334455544321  111223446653322223333  1222


Q ss_pred             ----cCC---HHHHHHHHHHHhcCCCeEEEcCChHHHHHH
Q 012720          283 ----SKD---RKLANAVQQLLASKHLRISTSSDVTGVEIA  315 (458)
Q Consensus       283 ----g~d---~e~~e~l~~lL~~~g~~v~~~~di~~~~~~  315 (458)
                          +.+   .+.++.+.+++...|.++...+.-..+...
T Consensus       188 ~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~  227 (667)
T PLN02712        188 KVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYA  227 (667)
T ss_pred             eccCCCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence                222   245677789999999998876554444443

>PLN02712 arogenate dehydrogenase

Probab=99.11  E-value=1.7e-09  Score=118.82  Aligned_cols=165  Identities=15%  Similarity=0.123  Sum_probs=103.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVil  205 (458)
                      .|||+|||+|.||..+|..|.+.|  ++|++|+|+.+. +...+.|              +....+.++++. .+|+||+
T Consensus       369 ~~kIgIIGlG~mG~slA~~L~~~G--~~V~~~dr~~~~-~~a~~~G--------------v~~~~~~~el~~~~aDvVIL  431 (667)
T PLN02712        369 KLKIAIVGFGNFGQFLAKTMVKQG--HTVLAYSRSDYS-DEAQKLG--------------VSYFSDADDLCEEHPEVILL  431 (667)
T ss_pred             CCEEEEEecCHHHHHHHHHHHHCc--CEEEEEECChHH-HHHHHcC--------------CeEeCCHHHHHhcCCCEEEE
Confidence            589999999999999999999988  999999998643 3333333              234457777665 5899999


Q ss_pred             cCccccHHHHHHhhhh-cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCe---EE
Q 012720          206 AMPVQFSSSFLEGISD-YVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPT---AM  279 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~-~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t---~v  279 (458)
                      |||...+.++++++.. .++++++|++++.+-.     ...+.+.+.++..  +.....+.|+............   ..
T Consensus       432 avP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~-----~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~  506 (667)
T PLN02712        432 CTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKE-----FPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKV  506 (667)
T ss_pred             CCChHHHHHHHHHHHHhcCCCCcEEEECCCccH-----HHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCc
Confidence            9999999999998865 6888999999964321     1223444443321  1111123333322100001110   01


Q ss_pred             EEccC--CHHHHHHHHHHHhcCCCeEEEcCChHHHH
Q 012720          280 VVASK--DRKLANAVQQLLASKHLRISTSSDVTGVE  313 (458)
Q Consensus       280 ~i~g~--d~e~~e~l~~lL~~~g~~v~~~~di~~~~  313 (458)
                      .+++.  ..+.++.+.+++...|.+++..+--..+.
T Consensus       507 ~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~  542 (667)
T PLN02712        507 RIGSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDW  542 (667)
T ss_pred             EeCCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHH
Confidence            12221  23456677799999998887765444333

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=99.06  E-value=1.6e-09  Score=112.09  Aligned_cols=224  Identities=15%  Similarity=0.105  Sum_probs=130.5

Q ss_pred             CeEEEECcchHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccC-CCC---CCCCceEEeC--CHHh---hc
Q 012720          128 NKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF-PEQ---KLPENVIATT--DAKT---AL  197 (458)
Q Consensus       128 ~kI~IIGaG~mG~-~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~-~~~---~l~~~i~a~~--~~~e---a~  197 (458)
                      |||.++|+|+||. .++..|.++|  ++|++++++++.+++++++|+..... +..   ..-..+....  +.++   .+
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~   78 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAI   78 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCC--CeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHh
Confidence            6899999999998 5588999988  99999999999999999987531111 111   1111233331  2122   34


Q ss_pred             CCCCEEEEcCccccHHHHHHhhhhcCCC--------CCeEEEeccCCCcchhhhHHHHHHHHh------------CCCCC
Q 012720          198 LGADYCLHAMPVQFSSSFLEGISDYVDP--------GLPFISLSKGLELNTLRMMSQIIPQAL------------RNPRQ  257 (458)
Q Consensus       198 ~~aDiVilaVp~~~v~~vl~~i~~~l~~--------~~ivV~~snGi~~~t~~~l~e~l~~~l------------g~~~~  257 (458)
                      .++|+|+++|+....+.++..|.+.+.+        +-.|++|.||+.++  ..+.+.+.+..            +-+ .
T Consensus        79 ~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng--~~L~~~V~~~~~~~~~~wi~~~~~f~-~  155 (381)
T PRK02318         79 AEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGT--SFLKKHVLKALSEDEKAWLEEHVGFV-D  155 (381)
T ss_pred             cCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHH--HHHHHHHHHhCCHHHHHHHHhcCCCC-C
Confidence            5889999999988877777766555433        23789999999875  23333332211            100 0


Q ss_pred             CEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCC-----CeEEEcCChHHHHHHHHHHHH-HHH---HHHH
Q 012720          258 PFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKH-----LRISTSSDVTGVEIAGALKNV-LAI---AAGI  328 (458)
Q Consensus       258 ~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g-----~~v~~~~di~~~~~~kalkNi-~ai---~~G~  328 (458)
                      ..+-+.+|....   .+..  .+..   +...+.+.+-++..+     ..+.+++|+...+|.|+..|. .+.   ..|.
T Consensus       156 t~VDrI~P~~~~---~d~~--~v~~---E~f~~wviE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~  227 (381)
T PRK02318        156 SAVDRIVPAQKN---EDPL--DVTV---EPFSEWIVDKTQFKGALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGY  227 (381)
T ss_pred             cHHhcCCCCCCc---cCCc--cccc---ccceEEEEecccccCCCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHH
Confidence            111223341110   0000  0000   000111111111111     257889999999999998653 222   2344


Q ss_pred             Hhccc-----CCCcHHHHHHHHHHHHHHHHHH-HcCCCcccc
Q 012720          329 VVGMN-----LGNNSMAALVAQGCSEIRWLAT-KMGAKPATI  364 (458)
Q Consensus       329 ~~~~k-----l~~n~~~al~~~~l~E~~~la~-a~Gi~~~~~  364 (458)
                      ..+.+     +.+.....++...+.|+..++. +.|++++.+
T Consensus       228 l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~g~~~~~l  269 (381)
T PRK02318        228 LKGYKTIREAILDPSIRAVVKGALEESGAVLIKKYGFDKEEH  269 (381)
T ss_pred             HcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcCCcCHHHH
Confidence            33333     3345567888999999999996 468865443

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.03  E-value=6.2e-09  Score=106.59  Aligned_cols=158  Identities=13%  Similarity=0.190  Sum_probs=104.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+||+|||+ |.||..+|..|.+.. +++|+.+|+..+                         ...++++++++||+||+
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVil   57 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP-------------------------GSLDPATLLQRADVLIF   57 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEEE
Confidence            579999999 999999999999752 389999998521                         11256677899999999


Q ss_pred             cCccccHHHHHHhhhhc---CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          206 AMPVQFSSSFLEGISDY---VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~---l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |||...+.++++++.++   ++++++|.++.. +=    ..+.+.+.+. +..+.....+.||... ....+....+ ..
T Consensus        58 avPv~~~~~~l~~l~~~~~~l~~~~iVtDVgS-vK----~~i~~~~~~~-~~~fVG~HPMaG~E~s-~lf~g~~~il-tp  129 (370)
T PRK08818         58 SAPIRHTAALIEEYVALAGGRAAGQLWLDVTS-IK----QAPVAAMLAS-QAEVVGLHPMTAPPKS-PTLKGRVMVV-CE  129 (370)
T ss_pred             eCCHHHHHHHHHHHhhhhcCCCCCeEEEECCC-Cc----HHHHHHHHhc-CCCEEeeCCCCCCCCC-cccCCCeEEE-eC
Confidence            99999999999999876   789999998872 21    1122222221 1111112234455322 1234544322 22


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHH
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGAL  318 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kal  318 (458)
                      ....+..+.++++++..|.++...+--..++..+.+
T Consensus       130 ~~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~v  165 (370)
T PRK08818        130 ARLQHWSPWVQSLCSALQAECVYATPEHHDRVMALV  165 (370)
T ss_pred             CCchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence            344555788999999999998877655555554443

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.03  E-value=2.4e-09  Score=108.47  Aligned_cols=121  Identities=19%  Similarity=0.240  Sum_probs=88.5

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.+.|+    |.+.   ..+.++.  .|+|+|||+|.||..+|.+|...|  ++|.+|+|+++.....  
T Consensus       119 R~~~~~~~~~~~~~~~----w~~~---~~~~~l~--g~~VgIIG~G~IG~~vA~~L~~~G--~~V~~~d~~~~~~~~~--  185 (330)
T PRK12480        119 RRFPDIERRVQAHDFT----WQAE---IMSKPVK--NMTVAIIGTGRIGAATAKIYAGFG--ATITAYDAYPNKDLDF--  185 (330)
T ss_pred             HhHHHHHHHHHhCCcc----cccc---cCccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCChhHhhhh--
Confidence            4445566666666552    3221   1233443  579999999999999999999888  9999999987542211  


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcccc-HHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                                      +....+++++++++|+|++++|... +..++ .++.+.+++++++|++++|-..++
T Consensus       186 ----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~  241 (330)
T PRK12480        186 ----------------LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINT  241 (330)
T ss_pred             ----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCH
Confidence                            1123478889999999999999653 55555 567888999999999999987764

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.98  E-value=4.6e-08  Score=95.11  Aligned_cols=173  Identities=15%  Similarity=0.157  Sum_probs=117.7

Q ss_pred             CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEE
Q 012720          152 QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS  231 (458)
Q Consensus       152 ~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~  231 (458)
                      +++|++++|+.++++.+.+..             ++..+.+..+++.++|+||+|||++.+.+++.++.+.+.++++||+
T Consensus         9 ~~~I~v~~R~~e~~~~l~~~~-------------g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS   75 (245)
T TIGR00112         9 AYDIIVINRSPEKLAALAKEL-------------GIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLIS   75 (245)
T ss_pred             CCeEEEEcCCHHHHHHHHHHc-------------CcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEE
Confidence            378999999998887776531             1345567778788999999999999999999999887777889999


Q ss_pred             eccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720          232 LSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVT  310 (458)
Q Consensus       232 ~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~  310 (458)
                      +.+|+..+       .+.+.++..  ...+...|+.+..++.|. +.+..+. .+++..+.++.+|+..|..+...++..
T Consensus        76 ~~agi~~~-------~l~~~~~~~--~~ivR~mPn~~~~~~~g~-t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~  145 (245)
T TIGR00112        76 IAAGVTLE-------KLSQLLGGT--RRVVRVMPNTPAKVGAGV-TAIAANANVSEEDRALVLALFKAVGEVVELPEALM  145 (245)
T ss_pred             ecCCCCHH-------HHHHHcCCC--CeEEEECCChHHHHhCCe-EEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHc
Confidence            99999864       355556531  135778899888776653 2233332 345677899999999997776654322


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720          311 GVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       311 ~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~  366 (458)
                               +.+...+|       ..+.   ++...+..+..-+.+.|++++....
T Consensus       146 ---------~~~talsg-------sgPA---~~~~~~~al~~~~v~~Gl~~~~A~~  182 (245)
T TIGR00112       146 ---------DAVTALSG-------SGPA---YVFLFIEALADAGVKQGLPRELALE  182 (245)
T ss_pred             ---------chHHhhcc-------CcHH---HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence                     21111111       1122   3333444455567778988776544

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=98.98  E-value=1.5e-08  Score=98.76  Aligned_cols=189  Identities=17%  Similarity=0.187  Sum_probs=124.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------CCCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l~~~i~a~~~~~ea~~~a  200 (458)
                      |+||+.||+|.+|.+....++..-.+..|+++|.+..+..+++... -+.|.||..      .-.++.+.+|.+.++.++
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~-lpiyepgldevv~~crgknlffstdiekai~ea   79 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDK-LPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA   79 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCC-CcccCCCHHHHHHHhcCCceeeecchHHHhhhc
Confidence            4799999999999998888775543468999999998888887754 356777753      245677889999999999


Q ss_pred             CEEEEcCccc---------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC--CCCCCEEEEE
Q 012720          201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR--NPRQPFIALS  263 (458)
Q Consensus       201 DiVilaVp~~---------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg--~~~~~~~vl~  263 (458)
                      |+||++|-..               .+++....|...-....+|+.-+ ++...+    +|.+...+.  .+...+-+++
T Consensus        80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivveks-tvpv~a----aesi~~il~~n~~~i~fqils  154 (481)
T KOG2666|consen   80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKS-TVPVKA----AESIEKILNHNSKGIKFQILS  154 (481)
T ss_pred             ceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeec-cccchH----HHHHHHHHhcCCCCceeEecc
Confidence            9999988531               36666677777666666776555 455433    344444432  1234567899


Q ss_pred             CcccHHHHh----ccCCeEEEEccCC-H---HHHHHHHHHHhcCC-CeEEEcCChHHHHHHHHHHHH
Q 012720          264 GPSFALELM----NKLPTAMVVASKD-R---KLANAVQQLLASKH-LRISTSSDVTGVEIAGALKNV  321 (458)
Q Consensus       264 gP~~a~ei~----~g~~t~v~i~g~d-~---e~~e~l~~lL~~~g-~~v~~~~di~~~~~~kalkNi  321 (458)
                      .|.+..|..    .-.+..+.++|.+ +   ...+.+..+++..- ..-..+.+....|+.|+..|.
T Consensus       155 npeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaana  221 (481)
T KOG2666|consen  155 NPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANA  221 (481)
T ss_pred             ChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence            998866431    1245667777754 2   34555666665432 123345555566666655554

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.98  E-value=1.2e-08  Score=113.42  Aligned_cols=170  Identities=14%  Similarity=0.169  Sum_probs=112.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea  196 (458)
                      .+||+|||+|.||..||..++.+|  ++|+++|++++.++...+.       ......+...   .....++.+++.++ 
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  389 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-  389 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence            468999999999999999999999  9999999999876532211       0000001110   11246788888854 


Q ss_pred             cCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCE-EEEECcccHHHHhc
Q 012720          197 LLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF-IALSGPSFALELMN  273 (458)
Q Consensus       197 ~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~-~vl~gP~~a~ei~~  273 (458)
                      +++||+||-|++.  ....+++.++.+++++++++.+.+.++...       .+.+.+..+..-+ .....|.+...   
T Consensus       390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p~r~~g~Hff~P~~~~~---  459 (715)
T PRK11730        390 FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS-------LLAKALKRPENFCGMHFFNPVHRMP---  459 (715)
T ss_pred             hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCCccEEEEecCCcccccc---
Confidence            7999999999996  347788899999999999998877777653       2333333221101 12234432221   


Q ss_pred             cCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720          274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG  311 (458)
Q Consensus       274 g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~  311 (458)
                        ...++.+. -+++.++.+..++...|...+...|..|
T Consensus       460 --lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG  496 (715)
T PRK11730        460 --LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG  496 (715)
T ss_pred             --eEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc
Confidence              11122222 3678999999999999988777677655

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.95  E-value=1.6e-08  Score=112.24  Aligned_cols=169  Identities=17%  Similarity=0.192  Sum_probs=111.8

Q ss_pred             CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhhc---C----CCccCCCC---CCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKH---C----NCRYFPEQ---KLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~v~~r~~~~~e~l~~~g---~----~~~~~~~~---~l~~~i~a~~~~~e  195 (458)
                      .+||+|||+|.||..+|..++ .+|  ++|+++|.+++.++...+.-   +    ....+...   .....+..+++.+ 
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  380 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATKAG--IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-  380 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-
Confidence            468999999999999999998 589  99999999997655432210   0    00000000   1124577888885 


Q ss_pred             hcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHH
Q 012720          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALEL  271 (458)
Q Consensus       196 a~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei  271 (458)
                      ++++||+||-|++..  ...+++.++.+++++++++.+.+.++....       +.+.+..+. .+.  -...|.+..  
T Consensus       381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~-------la~~~~~p~-r~~g~HffnP~~~~--  450 (699)
T TIGR02440       381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ-------IAAAASRPE-NVIGLHYFSPVEKM--  450 (699)
T ss_pred             HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH-------HHHhcCCcc-cEEEEecCCccccC--
Confidence            579999999999963  467788999999999999988887777641       223333211 111  223343221  


Q ss_pred             hccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720          272 MNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG  311 (458)
Q Consensus       272 ~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~  311 (458)
                         ....++.+. -+++.++.+..++...|...+...|..|
T Consensus       451 ---~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG  488 (699)
T TIGR02440       451 ---PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG  488 (699)
T ss_pred             ---ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence               111122222 3578999999999999988877777654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.95  E-value=1.1e-08  Score=101.83  Aligned_cols=169  Identities=18%  Similarity=0.219  Sum_probs=107.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh---cC----CCccCCCC---CCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK---HC----NCRYFPEQ---KLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~---g~----~~~~~~~~---~l~~~i~a~~~~~ea  196 (458)
                      .+||+|||+|.||..+|..++.+|  ++|+++|++++.+++....   .+    ....+...   ..-..++.++++. +
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G--~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~   79 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAG--YDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-A   79 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcC--CceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-H
Confidence            579999999999999999999988  9999999998765433221   00    00001110   1123455566665 5


Q ss_pred             cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCC-CEEEEECcccHHHHhc
Q 012720          197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ-PFIALSGPSFALELMN  273 (458)
Q Consensus       197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~-~~~vl~gP~~a~ei~~  273 (458)
                      +++||+||-+++..  --.+++.++..+.++++++-+.+.++.+..       +.+.+..+-. -..-...|.....   
T Consensus        80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~-------ia~~~~rper~iG~HFfNP~~~m~---  149 (307)
T COG1250          80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITE-------LAEALKRPERFIGLHFFNPVPLMP---  149 (307)
T ss_pred             hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHH-------HHHHhCCchhEEEEeccCCCCcce---
Confidence            89999999999963  467788899999999999988887887642       2233222111 0112234443221   


Q ss_pred             cCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720          274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVT  310 (458)
Q Consensus       274 g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~  310 (458)
                        ...++.+. -+++.++++.++..+.|.......|..
T Consensus       150 --LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~p  185 (307)
T COG1250         150 --LVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVP  185 (307)
T ss_pred             --eEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCC
Confidence              11122222 257889999999999885544445543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.94  E-value=2.2e-08  Score=111.14  Aligned_cols=170  Identities=13%  Similarity=0.147  Sum_probs=112.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCCC---CCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPEQ---KLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-------g~~~~~~~~~---~l~~~i~a~~~~~ea  196 (458)
                      .+||+|||+|.||..||..++.+|  ++|+++|++++.+++..+.       ......+...   .....++.+++.++ 
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  389 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKG--TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG-  389 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-
Confidence            468999999999999999999999  9999999999876543221       0000001100   11235777888854 


Q ss_pred             cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHHhc
Q 012720          197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALELMN  273 (458)
Q Consensus       197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~-~~vl~gP~~a~ei~~  273 (458)
                      +++||+||-||+..  ...+++.++.+.+++++++.+.+.++...       .+.+.+..+..- ..-...|.+...   
T Consensus       390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~-------~ia~~~~~p~r~ig~Hff~P~~~~~---  459 (714)
T TIGR02437       390 FDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS-------LLAKALKRPENFCGMHFFNPVHRMP---  459 (714)
T ss_pred             hcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH-------HHHhhcCCcccEEEEecCCCcccCc---
Confidence            79999999999963  47788899999999999998887777653       233333322110 112234433221   


Q ss_pred             cCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720          274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG  311 (458)
Q Consensus       274 g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~  311 (458)
                        ...++.+. -+++.++.+.+++...|.......|..|
T Consensus       460 --lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG  496 (714)
T TIGR02437       460 --LVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG  496 (714)
T ss_pred             --eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc
Confidence              11122222 3578899999999999988777677654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.93  E-value=1.6e-08  Score=112.36  Aligned_cols=170  Identities=20%  Similarity=0.193  Sum_probs=111.8

Q ss_pred             CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhh---c----CCCccCCC---CCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEK---H----CNCRYFPE---QKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~v~~r~~~~~e~l~~~---g----~~~~~~~~---~~l~~~i~a~~~~~e  195 (458)
                      .+||+|||+|.||..||..++ .+|  ++|+++|++++.++...+.   .    .....+..   ......++.+++.+ 
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  385 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAG--LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR-  385 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence            468999999999999999999 888  9999999998765543221   0    00000110   01124678888885 


Q ss_pred             hcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC-EEEEECcccHHHHh
Q 012720          196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP-FIALSGPSFALELM  272 (458)
Q Consensus       196 a~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~-~~vl~gP~~a~ei~  272 (458)
                      ++++||+||-|++.  ....+++.++.+++++++++.+.+.++....       +.+.+..+..- ..-...|.+...  
T Consensus       386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~-------la~~~~~p~r~ig~Hff~P~~~~~--  456 (708)
T PRK11154        386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ-------IAAAAARPEQVIGLHYFSPVEKMP--  456 (708)
T ss_pred             HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH-------HHHhcCcccceEEEecCCccccCc--
Confidence            57999999999996  3477888999999999999988887777642       22332321110 112234433221  


Q ss_pred             ccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720          273 NKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG  311 (458)
Q Consensus       273 ~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~  311 (458)
                         ...++.+. -+++.++.+..++...|.......|..|
T Consensus       457 ---lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG  493 (708)
T PRK11154        457 ---LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG  493 (708)
T ss_pred             ---eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc
Confidence               11222222 3678999999999998887666666543

>PLN03139 formate dehydrogenase; Provisional

Probab=98.93  E-value=5.1e-09  Score=107.82  Aligned_cols=126  Identities=13%  Similarity=0.130  Sum_probs=91.6

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-.+.++.++.|.|...     .+ ...+.++.  .++|+|||+|+||..+|++|..-|  ++|.+|+|.....+...+
T Consensus       171 R~~~~~~~~~~~g~W~~~-----~~-~~~~~~L~--gktVGIVG~G~IG~~vA~~L~afG--~~V~~~d~~~~~~~~~~~  240 (386)
T PLN03139        171 RNFLPGYHQVVSGEWNVA-----GI-AYRAYDLE--GKTVGTVGAGRIGRLLLQRLKPFN--CNLLYHDRLKMDPELEKE  240 (386)
T ss_pred             cCcHHHHHHHHhCCCccc-----cc-cCCCcCCC--CCEEEEEeecHHHHHHHHHHHHCC--CEEEEECCCCcchhhHhh
Confidence            445667777788877531     11 11233444  679999999999999999999777  999999987532222222


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+              +...++++++++++|+|++++|. ..++.++ .++...+++++++|+++.|-..++
T Consensus       241 ~g--------------~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe  298 (386)
T PLN03139        241 TG--------------AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDT  298 (386)
T ss_pred             cC--------------ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhH
Confidence            22              23345889999999999999995 5678777 457888999999999998866553

>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1

Probab=98.92  E-value=7.1e-09  Score=90.08  Aligned_cols=117  Identities=17%  Similarity=0.164  Sum_probs=76.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHcCCCccc--cccccCCcchhhhhccCC
Q 012720          308 DVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKMGAKPAT--ITGLSGTGDIMLTCFVNL  381 (458)
Q Consensus       308 di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~~~la~a~Gi~~~~--~~~~~g~gd~~~t~~~~~  381 (458)
                      ||....|.|++.|....+.+....+.++    +.....++...+.|+.+++++.|++.+.  +.+.     +...+....
T Consensus         1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~~~~~~l~~E~~~va~a~G~~l~~~~~~~~-----~~~~~~~~~   75 (125)
T PF08546_consen    1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEARELIRALMREVIAVARALGIPLDPDDLEEA-----IERLIRSTP   75 (125)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHH-----HHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHHHHHHHHHHHHHHHHHHhhccCcHHHHHHH-----HHHHHHhcC
Confidence            6788899999999766665555554432    3446699999999999999999986332  2110     111111111


Q ss_pred             CccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720          382 SRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN  440 (458)
Q Consensus       382 srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~  440 (458)
                      ....++.+|+.+|+++| +          ...+|+++++|+++|+++|.++.+|++++.
T Consensus        76 ~~~~SM~~D~~~gr~tE-i----------d~i~G~vv~~a~~~gv~~P~~~~i~~lvk~  123 (125)
T PF08546_consen   76 DNRSSMLQDIEAGRPTE-I----------DYINGYVVRLAKKHGVPTPVNETIYALVKA  123 (125)
T ss_dssp             TT--HHHHHHHTTB--S-H----------HHTHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred             CccccHHHHHHHccccc-H----------HHHHHHHHHHHHHHCCCCcHHHHHHHHHHH
Confidence            12235678888888765 2          366799999999999999999999999875

1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....

>PRK07574 formate dehydrogenase; Provisional

Probab=98.92  E-value=9.6e-09  Score=105.80  Aligned_cols=126  Identities=13%  Similarity=0.139  Sum_probs=91.2

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|...      .....+.++.  .|+|+|||+|+||..+|++|..-|  ++|.+|+|.....+....
T Consensus       164 R~~~~~~~~~~~g~W~~~------~~~~~~~~L~--gktVGIvG~G~IG~~vA~~l~~fG--~~V~~~dr~~~~~~~~~~  233 (385)
T PRK07574        164 RNYEPSHRQAVEGGWNIA------DCVSRSYDLE--GMTVGIVGAGRIGLAVLRRLKPFD--VKLHYTDRHRLPEEVEQE  233 (385)
T ss_pred             cCHHHHHHHHHhCCCCcc------cccccceecC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCchhhHhh
Confidence            555667777777777641      1111123343  579999999999999999999777  999999997632222222


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+              +....+++++++.||+|++++|. ..++.++. +....+++|+++|+++.|-..++
T Consensus       234 ~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe  291 (385)
T PRK07574        234 LG--------------LTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDR  291 (385)
T ss_pred             cC--------------ceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhH
Confidence            11              23335789999999999999995 56888884 57788999999999998876653

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.91  E-value=6.1e-09  Score=105.73  Aligned_cols=127  Identities=14%  Similarity=0.220  Sum_probs=91.8

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhc--cccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRS--KAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l  168 (458)
                      ++-...++.++.|.|.+.   ...|..  ..+.++.  .++|+|||+|+||..+|.+|...|  ++|.+|+|+..... .
T Consensus       117 R~~~~~~~~~~~g~W~~~---~~~~~~~~~~g~~L~--gktvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~-~  188 (333)
T PRK13243        117 RRLVEADHFVRSGEWKRR---GVAWHPLMFLGYDVY--GKTIGIIGFGRIGQAVARRAKGFG--MRILYYSRTRKPEA-E  188 (333)
T ss_pred             hCHHHHHHHHHcCCCCcc---ccccccccccccCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCChhh-H
Confidence            455667788888888641   111221  1234454  679999999999999999999887  99999999764321 1


Q ss_pred             HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       169 ~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      ...+              +. ..+++++++++|+|++++|. ..+..++ .+....+++++++|+++.|-..++
T Consensus       189 ~~~~--------------~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~  247 (333)
T PRK13243        189 KELG--------------AE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDT  247 (333)
T ss_pred             HHcC--------------CE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCH
Confidence            1111              12 23788889999999999995 4577777 467788999999999998866653

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=4.2e-08  Score=97.09  Aligned_cols=209  Identities=13%  Similarity=0.136  Sum_probs=134.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDiVi  204 (458)
                      +.|+.||++.||..++.+.+++|  +.|.+|+|+..+++.+.++..+-.         .+.-..++++.   ++....|+
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~G--f~v~~yNRT~skvD~flaneak~~---------~i~ga~S~ed~v~klk~PR~ii   75 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKG--FTVCAYNRTTSKVDEFLANEAKGT---------KIIGAYSLEDFVSKLKKPRVII   75 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccC--ceEEEeccchHhHHHHHHHhhcCC---------cccCCCCHHHHHHhcCCCcEEE
Confidence            68999999999999999999999  999999999999998876532210         12223466665   46789999


Q ss_pred             EcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE-ECcccHHHHhccCCeEEEEc
Q 012720          205 HAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       205 laVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl-~gP~~a~ei~~g~~t~v~i~  282 (458)
                      +.||+ ..+..++++|.+++.+|.+||+-.|.-.++|.++..+ +.+ .|.     -++ .|-+-.+|.+.-.|+  .+.
T Consensus        76 llvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e-l~k-~Gi-----lfvG~GVSGGEEGAR~GPS--lMp  146 (487)
T KOG2653|consen   76 LLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE-LAK-KGI-----LFVGSGVSGGEEGARYGPS--LMP  146 (487)
T ss_pred             EEeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH-HHh-cCc-----EEEecCccCcccccccCCc--cCC
Confidence            99997 5699999999999999999999888777776544333 222 132     222 222223344333444  356


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH-cCCCc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK-MGAKP  361 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a-~Gi~~  361 (458)
                      |++.+....++++|.....++..++.  -..|-+   +     .|...=+|+.+|-+---=.+.+.|+..+.+. .|+.-
T Consensus       147 Gg~~~Awp~ik~ifq~iaakv~~~ep--Cc~wvG---~-----~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~  216 (487)
T KOG2653|consen  147 GGSKEAWPHIKDIFQKIAAKVSDGEP--CCDWVG---E-----GGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN  216 (487)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCC--Ceeeec---C-----CCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH
Confidence            66888999999999753222111100  011100   0     0222222333332222226789999999999 67775


Q ss_pred             ccccc
Q 012720          362 ATITG  366 (458)
Q Consensus       362 ~~~~~  366 (458)
                      +.+.+
T Consensus       217 ~eia~  221 (487)
T KOG2653|consen  217 DEIAE  221 (487)
T ss_pred             HHHHH
Confidence            55543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.90  E-value=5.9e-09  Score=105.13  Aligned_cols=124  Identities=16%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             cccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720           90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus        90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++-...++.+++|.|++        ....+.++.  .+++||||+|++|+.+|.+|..-|  ++|.+||+....- ...
T Consensus       115 ~R~~~~~~~~~~~g~W~~--------~~~~g~el~--gkTvGIiG~G~IG~~va~~l~afg--m~v~~~d~~~~~~-~~~  181 (324)
T COG0111         115 ARRIPDADASQRRGEWDR--------KAFRGTELA--GKTVGIIGLGRIGRAVAKRLKAFG--MKVIGYDPYSPRE-RAG  181 (324)
T ss_pred             hcCchhhHHHHHcCCccc--------ccccccccc--CCEEEEECCCHHHHHHHHHHHhCC--CeEEEECCCCchh-hhc
Confidence            366677788888887776        122344555  679999999999999999999777  9999999943221 111


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      ..              .....+++++.++.||+|.+.+|. ..++.++. +....|++|.++|+++.|-..++
T Consensus       182 ~~--------------~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde  240 (324)
T COG0111         182 VD--------------GVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDE  240 (324)
T ss_pred             cc--------------cceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecH
Confidence            11              123345899999999999999995 56888884 45778999999999999977653

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.89  E-value=5.5e-09  Score=105.31  Aligned_cols=148  Identities=16%  Similarity=0.213  Sum_probs=105.4

Q ss_pred             ceecCCCCCCCCCCccccccc----ccccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHH
Q 012720           68 TIITPYPDDPDPEPVSAVSSE----IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMA  143 (458)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA  143 (458)
                      ...|-.|+ -.++.++|-.--    ..++-.+.+|..|.|.|..   |. ......+.++.  .+++||||+|.+|.++|
T Consensus        90 I~Vtnvp~-~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~---~~-~~~~~~~~~l~--gktvGIiG~GrIG~avA  162 (324)
T COG1052          90 ITVTNVPG-YSTEAVAEHAVALILALARRIHEGDRRVREGNWSL---SG-GPDPLLGFDLR--GKTLGIIGLGRIGQAVA  162 (324)
T ss_pred             cEEEeCCC-CCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccc---cC-CcccccccCCC--CCEEEEECCCHHHHHHH
Confidence            55666665 444443332111    4588889999999998887   21 11122355565  67999999999999999


Q ss_pred             HHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhh
Q 012720          144 AHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISD  221 (458)
Q Consensus       144 ~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~  221 (458)
                      +++.  |++.+|..|+|.+.  ....+.+ .            .... +++++++++|+|++.+|. .....++. +...
T Consensus       163 ~r~~--~Fgm~v~y~~~~~~--~~~~~~~-~------------~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~  224 (324)
T COG1052         163 RRLK--GFGMKVLYYDRSPN--PEAEKEL-G------------ARYV-DLDELLAESDIISLHCPLTPETRHLINAEELA  224 (324)
T ss_pred             HHHh--cCCCEEEEECCCCC--hHHHhhc-C------------ceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHH
Confidence            9998  55699999999874  1222211 1            2233 488999999999999995 56888884 5678


Q ss_pred             cCCCCCeEEEeccCCCcch
Q 012720          222 YVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       222 ~l~~~~ivV~~snGi~~~t  240 (458)
                      .++++.++|+++.|-..++
T Consensus       225 ~mk~ga~lVNtaRG~~VDe  243 (324)
T COG1052         225 KMKPGAILVNTARGGLVDE  243 (324)
T ss_pred             hCCCCeEEEECCCccccCH
Confidence            8999999999999977664

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.89  E-value=2.2e-08  Score=111.52  Aligned_cols=169  Identities=16%  Similarity=0.197  Sum_probs=113.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCCC---CCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPEQ---KLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-------~~~~~~~~~---~l~~~i~a~~~~~ea  196 (458)
                      .+||+|||+|.||..||..++.+|  ++|+++|++++.+++..+.-       .....+...   .....++.++|.+ +
T Consensus       335 i~~v~ViGaG~MG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  411 (737)
T TIGR02441       335 VKTLAVLGAGLMGAGIAQVSVDKG--LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-G  411 (737)
T ss_pred             ccEEEEECCCHhHHHHHHHHHhCC--CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-H
Confidence            468999999999999999999999  99999999998766432210       000001100   1124577888886 4


Q ss_pred             cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHHh
Q 012720          197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALELM  272 (458)
Q Consensus       197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei~  272 (458)
                      +++||+||-+|+..  ...+++.++.+++++++++.+.+.++...       .+.+.+..+. .+.  -...|.+...  
T Consensus       412 ~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~-------~la~~~~~p~-r~ig~Hff~P~~~m~--  481 (737)
T TIGR02441       412 FKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIK-------DIAAVSSRPE-KVIGMHYFSPVDKMQ--  481 (737)
T ss_pred             hccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH-------HHHhhcCCcc-ceEEEeccCCcccCc--
Confidence            79999999999963  47778899999999999998887777764       2333333221 111  2233432221  


Q ss_pred             ccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720          273 NKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG  311 (458)
Q Consensus       273 ~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~  311 (458)
                         ...++.+. -+++.++.+..++...|.......|..|
T Consensus       482 ---LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG  518 (737)
T TIGR02441       482 ---LLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG  518 (737)
T ss_pred             ---eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC
Confidence               11122222 3578899999999999988777677554

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.84  E-value=9.4e-09  Score=104.33  Aligned_cols=123  Identities=20%  Similarity=0.226  Sum_probs=86.2

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.+.|.    |....   .+.++.  .|+|+|||+|.||..+|.+|++ +++++|++|+++....  ...
T Consensus       119 R~~~~~~~~~~~~~~~----~~~~~---~~~~l~--g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~--~~~  186 (332)
T PRK08605        119 RHFNQIQTKVREHDFR----WEPPI---LSRSIK--DLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDPFPNAK--AAT  186 (332)
T ss_pred             cChHHHHHHHHhCCcc----ccccc---ccceeC--CCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECCCccHh--HHh
Confidence            4445566667777662    32211   233444  5799999999999999999954 3338999999876432  111


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcccc-HHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                       .              +...++++++++++|+|++++|... ...++ .+..+.+++++++|++++|...++
T Consensus       187 -~--------------~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~  243 (332)
T PRK08605        187 -Y--------------VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT  243 (332)
T ss_pred             -h--------------ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH
Confidence             1              2234578899999999999999754 44444 346778999999999999987765

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.84  E-value=1.3e-08  Score=91.56  Aligned_cols=93  Identities=19%  Similarity=0.322  Sum_probs=70.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||.|+.|.+.|.+|.+.|  .+|++-.|... ..+..++.|..              + .+.+|+++.+|+|++
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrDSG--~~V~Vglr~~s~s~~~A~~~Gf~--------------v-~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRDSG--VNVIVGLREGSASWEKAKADGFE--------------V-MSVAEAVKKADVVML   66 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT-E--------------C-CEHHHHHHC-SEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCC--CCEEEEecCCCcCHHHHHHCCCe--------------e-ccHHHHHhhCCEEEE
Confidence            579999999999999999999999  99999888765 55666666642              2 377889999999999


Q ss_pred             cCccccHHHHH-HhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~~v~~vl-~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+|+....+++ ++|.+.+++|+.++... |+.
T Consensus        67 L~PD~~q~~vy~~~I~p~l~~G~~L~fah-Gfn   98 (165)
T PF07991_consen   67 LLPDEVQPEVYEEEIAPNLKPGATLVFAH-GFN   98 (165)
T ss_dssp             -S-HHHHHHHHHHHHHHHS-TT-EEEESS-SHH
T ss_pred             eCChHHHHHHHHHHHHhhCCCCCEEEeCC-cch
Confidence            99999999999 77999999999887544 654

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.83  E-value=1.8e-08  Score=93.23  Aligned_cols=101  Identities=18%  Similarity=0.274  Sum_probs=74.9

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      +.++.  .++|+|||+|.+|..+|.+|..-|  .+|++|+|.....+.....+              + ...+++++++.
T Consensus        31 ~~~l~--g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~~~--------------~-~~~~l~ell~~   91 (178)
T PF02826_consen   31 GRELR--GKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADEFG--------------V-EYVSLDELLAQ   91 (178)
T ss_dssp             BS-ST--TSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHHTT--------------E-EESSHHHHHHH
T ss_pred             ccccC--CCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccccc--------------c-eeeehhhhcch
Confidence            34444  579999999999999999999777  99999999987554333322              2 23488999999


Q ss_pred             CCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcc
Q 012720          200 ADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       200 aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      +|+|++++|. ..+..++ .+....++++.++|+++.|-..+
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vd  133 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVD  133 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhh
Confidence            9999999995 4565555 34677789999999999886655

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.82  E-value=2.2e-08  Score=99.79  Aligned_cols=94  Identities=17%  Similarity=0.235  Sum_probs=74.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|+||.++|.+|...|  ++|++|+|.....+.....|              +.. .+++++++.+|+|+++
T Consensus        16 gKtVGIIG~GsIG~amA~nL~d~G--~~ViV~~r~~~s~~~A~~~G--------------~~v-~sl~Eaak~ADVV~ll   78 (335)
T PRK13403         16 GKTVAVIGYGSQGHAQAQNLRDSG--VEVVVGVRPGKSFEVAKADG--------------FEV-MSVSEAVRTAQVVQML   78 (335)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCc--CEEEEEECcchhhHHHHHcC--------------CEE-CCHHHHHhcCCEEEEe
Confidence            478999999999999999999999  99999987654333333333              222 3788999999999999


Q ss_pred             CccccHHHHHH-hhhhcCCCCCeEEEeccCCCc
Q 012720          207 MPVQFSSSFLE-GISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       207 Vp~~~v~~vl~-~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|.....+++. ++.+.++++++++. +-|+..
T Consensus        79 LPd~~t~~V~~~eil~~MK~GaiL~f-~hgfni  110 (335)
T PRK13403         79 LPDEQQAHVYKAEVEENLREGQMLLF-SHGFNI  110 (335)
T ss_pred             CCChHHHHHHHHHHHhcCCCCCEEEE-CCCcce
Confidence            99876778874 68999999987764 447765

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.77  E-value=5.7e-08  Score=97.84  Aligned_cols=186  Identities=14%  Similarity=0.119  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCCHHH-------HHHH-----------HhhcCCCccCCCC---CCCCceEEeCC--HH
Q 012720          138 FGTAMAAHVANKKSQLKVYMLMRDPAV-------CQSI-----------NEKHCNCRYFPEQ---KLPENVIATTD--AK  194 (458)
Q Consensus       138 mG~~iA~~La~aG~~~~V~v~~r~~~~-------~e~l-----------~~~g~~~~~~~~~---~l~~~i~a~~~--~~  194 (458)
                      ||..||..++.+|  ++|+++|++++.       +++.           .+.|.    +...   ....+++.+++  +.
T Consensus         1 MG~giA~~~a~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~----~~~~~~~~~~~~i~~~~~~~~~   74 (314)
T PRK08269          1 MGQGIALAFAFAG--HDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGR----IDAAQADAVLARIAVVARDGAA   74 (314)
T ss_pred             CcHHHHHHHHhCC--CeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCC----CChhhHHHHHhCeEeecCcchH
Confidence            7999999999999  999999999842       1111           11111    1100   11235666644  56


Q ss_pred             hhcCCCCEEEEcCccc-c-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCE-EEEECcccHHHH
Q 012720          195 TALLGADYCLHAMPVQ-F-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF-IALSGPSFALEL  271 (458)
Q Consensus       195 ea~~~aDiVilaVp~~-~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~-~vl~gP~~a~ei  271 (458)
                      +++++||+||.||+.. . ...++.++.+.+++++++.+.+.++...       .+.+.+..+..-+ .....|.+... 
T Consensus        75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~-------~la~~~~~p~r~~g~Hf~~Pp~~~~-  146 (314)
T PRK08269         75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVT-------DLQRHVAHPERFLNAHWLNPAYLMP-  146 (314)
T ss_pred             HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHH-------HHHhhcCCcccEEEEecCCccccCc-
Confidence            7789999999999963 3 5556678888999999987666555442       2333322210000 11122222110 


Q ss_pred             hccCCeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720          272 MNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI  350 (458)
Q Consensus       272 ~~g~~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~  350 (458)
                          ...++.+ +.+++.++++.+++...|..+.+..|..+                         +....+....++|+
T Consensus       147 ----lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G-------------------------fi~nri~~~~l~EA  197 (314)
T PRK08269        147 ----LVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG-------------------------YIVPRIQALAMNEA  197 (314)
T ss_pred             ----eEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC-------------------------cchHHHHHHHHHHH
Confidence                0111111 34788999999999999988877666432                         12345667789999


Q ss_pred             HHHHHHcCCCcccccc
Q 012720          351 RWLATKMGAKPATITG  366 (458)
Q Consensus       351 ~~la~a~Gi~~~~~~~  366 (458)
                      +.++++.|++++++..
T Consensus       198 l~l~e~g~~~~e~iD~  213 (314)
T PRK08269        198 ARMVEEGVASAEDIDK  213 (314)
T ss_pred             HHHHHhCCCCHHHHHH
Confidence            9999999999887754

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.74  E-value=2.1e-07  Score=91.16  Aligned_cols=156  Identities=21%  Similarity=0.221  Sum_probs=98.1

Q ss_pred             HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccccHHHHHHhhhh
Q 012720          142 MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD  221 (458)
Q Consensus       142 iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~  221 (458)
                      ||..|.++|..++|+.||++++.++...+.|...            ...++ .++++++|+||+|||...+.++++++.+
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~------------~~~~~-~~~~~~~DlvvlavP~~~~~~~l~~~~~   67 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIID------------EASTD-IEAVEDADLVVLAVPVSAIEDVLEEIAP   67 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSS------------EEESH-HHHGGCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCee------------eccCC-HhHhcCCCEEEEcCCHHHHHHHHHHhhh
Confidence            6888999986689999999998887776666421            23334 4568999999999999999999999999


Q ss_pred             cCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC--CCCCEEEEECccc-----HH-HHhccCCeEEEEcc-CCHHHHHHH
Q 012720          222 YVDPGLPFISLSKGLELNTLRMMSQIIPQALRN--PRQPFIALSGPSF-----AL-ELMNKLPTAMVVAS-KDRKLANAV  292 (458)
Q Consensus       222 ~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~--~~~~~~vl~gP~~-----a~-ei~~g~~t~v~i~g-~d~e~~e~l  292 (458)
                      +++++++|++++ ++=    ..+.+.+.+.++.  .+.....+.||..     +. +...|....++... .+.+.++.+
T Consensus        68 ~~~~~~iv~Dv~-SvK----~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~  142 (258)
T PF02153_consen   68 YLKPGAIVTDVG-SVK----APIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV  142 (258)
T ss_dssp             GS-TTSEEEE---S-C----HHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred             hcCCCcEEEEeC-CCC----HHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence            999999999987 332    2334455555441  1223345566622     11 22345544333333 245788999


Q ss_pred             HHHHhcCCCeEEEcCChHHHHHH
Q 012720          293 QQLLASKHLRISTSSDVTGVEIA  315 (458)
Q Consensus       293 ~~lL~~~g~~v~~~~di~~~~~~  315 (458)
                      ++++...|.++...+--..++..
T Consensus       143 ~~l~~~~Ga~~~~~~~eeHD~~~  165 (258)
T PF02153_consen  143 EELWEALGARVVEMDAEEHDRIM  165 (258)
T ss_dssp             HHHHHHCT-EEEE--HHHHHHHH
T ss_pred             HHHHHHCCCEEEEcCHHHHHHHH
Confidence            99999999998876544444443

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.73  E-value=4.7e-08  Score=98.35  Aligned_cols=96  Identities=11%  Similarity=0.222  Sum_probs=75.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|+||..+|.+|..-|  ++|.+|+|..+...     +..           ......+++++++++|+|+++
T Consensus       136 g~tvgIvG~G~IG~~vA~~l~afG--~~V~~~~~~~~~~~-----~~~-----------~~~~~~~l~e~l~~aDvvv~~  197 (312)
T PRK15469        136 DFTIGILGAGVLGSKVAQSLQTWG--FPLRCWSRSRKSWP-----GVQ-----------SFAGREELSAFLSQTRVLINL  197 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCCCC-----Cce-----------eecccccHHHHHhcCCEEEEC
Confidence            579999999999999999999877  99999998753211     100           001123788899999999999


Q ss_pred             Ccc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720          207 MPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       207 Vp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      +|. .++..++. +....++++.++|++..|-..++
T Consensus       198 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde  233 (312)
T PRK15469        198 LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVE  233 (312)
T ss_pred             CCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCH
Confidence            995 56788774 46778999999999999876653

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.73  E-value=3.7e-08  Score=105.87  Aligned_cols=123  Identities=14%  Similarity=0.185  Sum_probs=90.3

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++.     .   +.+.++.  .++|+|||+|+||..+|.+|..-|  ++|.+|++.... +....
T Consensus       112 R~~~~~~~~~~~g~W~~~-----~---~~g~~l~--gktvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~  178 (525)
T TIGR01327       112 RNIPQADASLKEGEWDRK-----A---FMGTELY--GKTLGVIGLGRIGSIVAKRAKAFG--MKVLAYDPYISP-ERAEQ  178 (525)
T ss_pred             cCHHHHHHHHHcCCcccc-----c---cCccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence            555667778888877641     1   1234454  579999999999999999999777  999999985321 11222


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+              +...++++++++++|+|++++|. ..++.++ .+....+++++++|+++.|-..++
T Consensus       179 ~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde  236 (525)
T TIGR01327       179 LG--------------VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDE  236 (525)
T ss_pred             cC--------------CEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCH
Confidence            11              23345789999999999999995 4677777 456678999999999999876653

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.72  E-value=3.9e-08  Score=98.44  Aligned_cols=117  Identities=11%  Similarity=0.231  Sum_probs=85.7

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|..      .    .+.++.  .++|+|||+|+||..+|.+|..-|  ++|.+|+|+...      
T Consensus        98 R~i~~~~~~~~~g~w~~------~----~~~~L~--gktvgIiG~G~IG~~vA~~l~afG--~~V~~~~r~~~~------  157 (303)
T PRK06436         98 KNICENNYNMKNGNFKQ------S----PTKLLY--NKSLGILGYGGIGRRVALLAKAFG--MNIYAYTRSYVN------  157 (303)
T ss_pred             cChHHHHHHHHcCCCCC------C----CCCCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCcc------
Confidence            45556677777776653      1    122343  679999999999999999887667  999999997421      


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+..             ....+++++++++|+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus       158 ~~~~-------------~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~  216 (303)
T PRK06436        158 DGIS-------------SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK  216 (303)
T ss_pred             cCcc-------------cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence            1110             1124788999999999999995 5577776 346777999999999998866653

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.69  E-value=5.7e-08  Score=104.47  Aligned_cols=122  Identities=14%  Similarity=0.198  Sum_probs=90.2

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++      .  ...+.++.  .++|+|||+|+||..+|.+|..-|  ++|.+|+|.... +....
T Consensus       114 R~~~~~~~~~~~g~W~~------~--~~~g~~l~--gktvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~  180 (526)
T PRK13581        114 RNIPQAHASLKAGKWER------K--KFMGVELY--GKTLGIIGLGRIGSEVAKRAKAFG--MKVIAYDPYISP-ERAAQ  180 (526)
T ss_pred             cCHHHHHHHHHcCCCCc------c--CccccccC--CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence            45566677777787764      1  11234454  679999999999999999999877  999999985421 12222


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+              +... +++++++.+|+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus       181 ~g--------------~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde  237 (526)
T PRK13581        181 LG--------------VELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDE  237 (526)
T ss_pred             cC--------------CEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCH
Confidence            11              2333 788999999999999996 4677777 567888999999999999876653

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.67  E-value=1.9e-07  Score=92.20  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=108.4

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCC
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGAD  201 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aD  201 (458)
                      -+....+|+|||.|+||..+|..|.++|  |.|...+|.+  .+.+++...             ....+++.+.+ +..|
T Consensus        48 ~~k~tl~IaIIGfGnmGqflAetli~aG--h~li~hsRsd--yssaa~~yg-------------~~~ft~lhdlcerhpD  110 (480)
T KOG2380|consen   48 QWKATLVIAIIGFGNMGQFLAETLIDAG--HGLICHSRSD--YSSAAEKYG-------------SAKFTLLHDLCERHPD  110 (480)
T ss_pred             hcccceEEEEEecCcHHHHHHHHHHhcC--ceeEecCcch--hHHHHHHhc-------------ccccccHHHHHhcCCC
Confidence            3444579999999999999999999999  9999999987  334443211             11223444443 5789


Q ss_pred             EEEEcCccccHHHHHHhhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccHHHHhccCCeE
Q 012720          202 YCLHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALELMNKLPTA  278 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~-l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a~ei~~g~~t~  278 (458)
                      +|++||....++.++...-.. ++.++++++...=-.++     .+.+.+.++...  .-+..+.||....+..+|.+-.
T Consensus       111 vvLlctsilsiekilatypfqrlrrgtlfvdvlSvKefe-----k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV  185 (480)
T KOG2380|consen  111 VVLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEFE-----KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV  185 (480)
T ss_pred             EEEEEehhhhHHHHHHhcCchhhccceeEeeeeecchhH-----HHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence            999999999999998877555 77899988765311221     244555555421  1123467888666656666643


Q ss_pred             EEEc-----cCCHHHHHHHHHHHhcCCCeEEE
Q 012720          279 MVVA-----SKDRKLANAVQQLLASKHLRIST  305 (458)
Q Consensus       279 v~i~-----g~d~e~~e~l~~lL~~~g~~v~~  305 (458)
                      +.-.     ...++.+|.+-++|...|.+...
T Consensus       186 ydkvRig~~~~r~ercE~fleIf~cegckmVe  217 (480)
T KOG2380|consen  186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVE  217 (480)
T ss_pred             EEEeeccccccchHHHHHHHHHHHhcCCeEEE
Confidence            2211     12378999999999988877543

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.62  E-value=1.8e-07  Score=94.55  Aligned_cols=126  Identities=14%  Similarity=0.170  Sum_probs=89.3

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|...  +...   ..+.++.  .++|||||+|++|..+|+++. .+++.+|.+|+|.... +....
T Consensus       116 R~i~~~~~~~~~g~w~~~--~~~~---~~g~~L~--gktvGIiG~G~IG~~va~~l~-~~fgm~V~~~~~~~~~-~~~~~  186 (323)
T PRK15409        116 RRVVEVAERVKAGEWTAS--IGPD---WFGTDVH--HKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHK-EAEER  186 (323)
T ss_pred             cCHHHHHHHHHcCCCccc--Cccc---cccCCCC--CCEEEEEcccHHHHHHHHHHH-hcCCCEEEEECCCCch-hhHHh
Confidence            555677888888888641  1111   1244554  679999999999999999986 2334899999987421 11111


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+              +.. .++++++++||+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus       187 ~~--------------~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde  243 (323)
T PRK15409        187 FN--------------ARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDE  243 (323)
T ss_pred             cC--------------cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCH
Confidence            11              122 3788999999999999995 5677777 346788999999999999876653

>PLN02306 hydroxypyruvate reductase

Probab=98.60  E-value=2.1e-07  Score=96.17  Aligned_cols=140  Identities=12%  Similarity=0.083  Sum_probs=91.1

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHH-
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSI-  168 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l-  168 (458)
                      ++-...++.++.|.|.+   |...+  ..+.++.  .++|||||+|.+|..+|++|..+ ++.+|..||+.... .+.. 
T Consensus       136 R~i~~~~~~~~~g~w~~---~~~~~--~~g~~L~--gktvGIiG~G~IG~~vA~~l~~~-fGm~V~~~d~~~~~~~~~~~  207 (386)
T PLN02306        136 RRIVEADEFMRAGLYEG---WLPHL--FVGNLLK--GQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQSTRLEKFV  207 (386)
T ss_pred             hChHHHHHHHHcCCCcc---ccccc--cCCcCCC--CCEEEEECCCHHHHHHHHHHHhc-CCCEEEEECCCCchhhhhhh
Confidence            45556677778887754   43211  1234444  67999999999999999998632 34999999987532 1111 


Q ss_pred             HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       169 ~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      ...+....-...  .+..+....+++++++.+|+|++++|. ..++.++. +....|+++.++|+++.|-..++
T Consensus       208 ~~~~~~l~~~~~--~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe  279 (386)
T PLN02306        208 TAYGQFLKANGE--QPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDE  279 (386)
T ss_pred             hhhccccccccc--ccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCH
Confidence            111100000000  000122235899999999999999995 56777774 46788999999999999876653

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.59  E-value=1e-06  Score=84.40  Aligned_cols=159  Identities=16%  Similarity=0.170  Sum_probs=111.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHH-HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQS-INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~-l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      |+|+|||+|.|..++++.+.+.|.  ..++..+..+...... ++..|              ++.+.+..+.++.+|+++
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g--------------~~~~~~n~~~~~~s~v~~   66 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALG--------------VKTVFTNLEVLQASDVVF   66 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCC--------------ceeeechHHHHhhcccee
Confidence            689999999999999999999884  2345555553322222 44433              233333367788999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-  283 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-  283 (458)
                      ++||.+.+.+++.++...+..+.+|+++.-|+...+       +.+.++..  .-.+...|+.+..+..|.. .+..+. 
T Consensus        67 ~svKp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~-------l~~~l~~~--~rviRvmpNtp~~v~eg~s-v~~~g~~  136 (267)
T KOG3124|consen   67 LSVKPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSS-------LESKLSPP--TRVIRVMPNTPSVVGEGAS-VYAIGCH  136 (267)
T ss_pred             EeecchhHHHHhhcCccccccceEEEEEeecccHHH-------HHHhcCCC--CceEEecCCChhhhhcCcE-EEeeCCC
Confidence            999999999999999887778899999988887642       33444421  2246678888877766643 223333 


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVT  310 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~  310 (458)
                      ...+..+.++++|+..|+...+.++.+
T Consensus       137 ~~~~D~~l~~~ll~~vG~~~evpE~~i  163 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLCEEVPEKCI  163 (267)
T ss_pred             cchhhHHHHHHHHHhcCcceeCcHHhh
Confidence            234566889999999998887765543

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=98.58  E-value=2e-07  Score=93.47  Aligned_cols=135  Identities=15%  Similarity=0.267  Sum_probs=97.1

Q ss_pred             ccccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720           89 IRTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (458)
Q Consensus        89 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l  168 (458)
                      .-++-+.++|.++.|.| .   |..-|  ..+...+  .++|+|+|+|++|..+|.+|..-|  ..+....|++..-+..
T Consensus       132 ~~R~~~~g~~~~~~g~w-~---~~~~~--~~g~~~~--gK~vgilG~G~IG~~ia~rL~~Fg--~~i~y~~r~~~~~~~~  201 (336)
T KOG0069|consen  132 LLRRFSEGNEMVRNGGW-G---WAGGW--PLGYDLE--GKTVGILGLGRIGKAIAKRLKPFG--CVILYHSRTQLPPEEA  201 (336)
T ss_pred             HHhhhhhhhhhhhcCCc-c---ccCCc--ccccccc--CCEEEEecCcHHHHHHHHhhhhcc--ceeeeecccCCchhhH
Confidence            34778889999999988 2   22222  2344454  579999999999999999999755  6666677876544444


Q ss_pred             HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 012720          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQ  246 (458)
Q Consensus       169 ~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t~~~l~e  246 (458)
                      .+.+..               ..|.++.+.++|+|++|+|. ..+.++++ ++...++++.+||++..|-..+. +.+.+
T Consensus       202 ~~~~~~---------------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide-~~l~e  265 (336)
T KOG0069|consen  202 YEYYAE---------------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDE-EALVE  265 (336)
T ss_pred             HHhccc---------------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccH-HHHHH
Confidence            332211               23777888999999999995 56888885 57888999999999998876653 33344


Q ss_pred             HHH
Q 012720          247 IIP  249 (458)
Q Consensus       247 ~l~  249 (458)
                      .+.
T Consensus       266 aL~  268 (336)
T KOG0069|consen  266 ALK  268 (336)
T ss_pred             HHh
Confidence            443

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.57  E-value=3.7e-07  Score=95.18  Aligned_cols=120  Identities=15%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|.+      ..  ..+.++.  .++|||||+|++|..+|.++..-|  .+|..|++.+..    ..
T Consensus       125 R~~~~~~~~~~~g~w~~------~~--~~~~~L~--gktvGIiG~G~IG~~vA~~~~~fG--m~V~~~d~~~~~----~~  188 (409)
T PRK11790        125 RGIPEKNAKAHRGGWNK------SA--AGSFEVR--GKTLGIVGYGHIGTQLSVLAESLG--MRVYFYDIEDKL----PL  188 (409)
T ss_pred             cChHHHHHHHHcCcccc------cc--cCcccCC--CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCccc----cc
Confidence            45556677777776654      11  1233444  679999999999999999998766  999999986421    00


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                       +             .+....+++++++.||+|++++|. ..+..++ .+....+++++++|+++.|-..++
T Consensus       189 -~-------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde  246 (409)
T PRK11790        189 -G-------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI  246 (409)
T ss_pred             -C-------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCH
Confidence             0             123345889999999999999995 5577777 446788999999999999876654

>PLN02928 oxidoreductase family protein

Probab=98.55  E-value=2.7e-07  Score=94.23  Aligned_cols=109  Identities=14%  Similarity=0.140  Sum_probs=74.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..+|.+|..-|  ++|++|+|+...... ...+........  +........+++++++++|+|+++
T Consensus       159 gktvGIiG~G~IG~~vA~~l~afG--~~V~~~dr~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        159 GKTVFILGYGAIGIELAKRLRPFG--VKLLATRRSWTSEPE-DGLLIPNGDVDD--LVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHHhhCC--CEEEEECCCCChhhh-hhhccccccccc--cccccCcccCHHHHHhhCCEEEEC
Confidence            679999999999999999999777  999999987321111 000000000000  000000124788999999999999


Q ss_pred             Ccc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       207 Vp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      +|. ..+..++ .+....++++.++|+++.|-..++
T Consensus       234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde  269 (347)
T PLN02928        234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDY  269 (347)
T ss_pred             CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCH
Confidence            995 4567766 456778999999999999866653

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.55  E-value=9.3e-07  Score=83.02  Aligned_cols=167  Identities=10%  Similarity=0.203  Sum_probs=96.5

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|||+ |.||..++..|.++|  +.|+                                        ++++|+||+|
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g--~~v~----------------------------------------~~~~DlVila   38 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNG--LGVY----------------------------------------IKKADHAFLS   38 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCC--CEEE----------------------------------------ECCCCEEEEe
Confidence            68999998 999999999999999  8875                                        1468999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-cCC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-SKD  285 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~-g~d  285 (458)
                      +|.....++++++.+      +|+++.. +=    ..+.+...+.+|     ...+.||..+..... . ..++.. ..+
T Consensus        39 vPv~~~~~~i~~~~~------~v~Dv~S-vK----~~i~~~~~~~vg-----~HPMfGp~~a~~~lf-~-~~iv~~~~~~  100 (197)
T PRK06444         39 VPIDAALNYIESYDN------NFVEISS-VK----WPFKKYSGKIVS-----IHPLFGPMSYNDGVH-R-TVIFINDISR  100 (197)
T ss_pred             CCHHHHHHHHHHhCC------eEEeccc-cC----HHHHHhcCCEEe-----cCCCCCCCcCccccc-c-eEEEECCCCC
Confidence            999998888887642      5777652 11    111111111122     223457766542111 1 222232 345


Q ss_pred             HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHH---HHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHc-CCCc
Q 012720          286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGA---LKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM-GAKP  361 (458)
Q Consensus       286 ~e~~e~l~~lL~~~g~~v~~~~di~~~~~~ka---lkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~-Gi~~  361 (458)
                      ++..+.++++++  |.++...+--..++....   +-++++.+..  . ++      ..+....+....++++.. +.++
T Consensus       101 ~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~ishLpH~ia~al~--~-~~------~~~~t~~fr~l~ria~~~~~~~p  169 (197)
T PRK06444        101 DNYLNEINEMFR--GYHFVEMTADEHDLLMSEIMVKPYIISMILK--D-IK------SDIKTGSFDKLLEVSEIKEKENW  169 (197)
T ss_pred             HHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHHHHHHHHHHHHc--c-CC------CCCCCccHHHHHHHHHHhccCCH
Confidence            566788999998  667766554444443332   2233222111  1 11      122334666666676665 4455


Q ss_pred             cccc
Q 012720          362 ATIT  365 (458)
Q Consensus       362 ~~~~  365 (458)
                      +.+.
T Consensus       170 ~lw~  173 (197)
T PRK06444        170 EVFN  173 (197)
T ss_pred             HHHH
Confidence            5443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.52  E-value=2.4e-07  Score=93.35  Aligned_cols=124  Identities=16%  Similarity=0.180  Sum_probs=86.5

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...+|.++.+.|.+...|.  +..+.+.++.  .++|+|||.|.+|..+|+++..=|  .+|..|++....  ..  
T Consensus       115 R~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~l~--gktvgIiG~G~IG~~va~~l~~fg--~~V~~~~~~~~~--~~--  184 (314)
T PRK06932        115 HSLMGWYRDQLSDRWATCKQFC--YFDYPITDVR--GSTLGVFGKGCLGTEVGRLAQALG--MKVLYAEHKGAS--VC--  184 (314)
T ss_pred             hChHHHHHHHHcCCCCcCcccc--ccCCcccccC--CCEEEEECCCHHHHHHHHHHhcCC--CEEEEECCCccc--cc--
Confidence            4555667777788776421111  0011122343  679999999999999999997545  999999875321  00  


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                       .              . ...+++++++.||+|++++|. ..+..++ .+....++++.++|+++.|-..++
T Consensus       185 -~--------------~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde  240 (314)
T PRK06932        185 -R--------------E-GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDE  240 (314)
T ss_pred             -c--------------c-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence             0              0 013788999999999999994 5677777 456778999999999999876653

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.52  E-value=1.8e-07  Score=94.12  Aligned_cols=125  Identities=14%  Similarity=0.117  Sum_probs=87.9

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.+.|....-|..  ....+.++.  .++|||||+|++|..+|.++..=|  .+|..|+|.....    .
T Consensus       113 R~~~~~~~~~~~g~w~~~~~~~~--~~~~~~~L~--gktvGIiG~G~IG~~vA~~~~~fg--m~V~~~d~~~~~~----~  182 (311)
T PRK08410        113 GRINYYDRYVKSGEYSESPIFTH--ISRPLGEIK--GKKWGIIGLGTIGKRVAKIAQAFG--AKVVYYSTSGKNK----N  182 (311)
T ss_pred             hCHHHHHHHHHcCCCCcCCCccc--cCccccccC--CCEEEEECCCHHHHHHHHHHhhcC--CEEEEECCCcccc----c
Confidence            55566778888887764110100  000123444  679999999999999999997544  9999999864210    0


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+              +. ..+++++++.||+|++++|. ..++.++ ++....++++.++|+++.|-..++
T Consensus       183 ~~--------------~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe  239 (311)
T PRK08410        183 EE--------------YE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNE  239 (311)
T ss_pred             cC--------------ce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCH
Confidence            01              11 23789999999999999995 5677777 446788999999999999976654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.50  E-value=2.4e-07  Score=93.43  Aligned_cols=123  Identities=14%  Similarity=0.163  Sum_probs=87.9

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|.+...+.  ...+.+.++.  .++|||||+|++|..+|++|..-|  .+|..|+|....      
T Consensus       116 R~~~~~~~~~~~g~W~~~~~~~--~~~~~~~~l~--gktvgIiG~G~IG~~vA~~l~~fg--m~V~~~~~~~~~------  183 (317)
T PRK06487        116 TRLPDYQQAVAAGRWQQSSQFC--LLDFPIVELE--GKTLGLLGHGELGGAVARLAEAFG--MRVLIGQLPGRP------  183 (317)
T ss_pred             cCHHHHHHHHHcCCCccCcccc--cccCcccccC--CCEEEEECCCHHHHHHHHHHhhCC--CEEEEECCCCCc------
Confidence            5566777888888886521111  0011123344  679999999999999999998555  999999986321      


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      ..              .. ..+++++++.+|+|++++|. ..++.++. +....++++.++|+++.|-..++
T Consensus       184 ~~--------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde  240 (317)
T PRK06487        184 AR--------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDE  240 (317)
T ss_pred             cc--------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence            00              00 12788999999999999995 56777773 46778999999999999876653

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.47  E-value=6.8e-07  Score=80.07  Aligned_cols=96  Identities=22%  Similarity=0.296  Sum_probs=68.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|+|+|.||..++..|.+.| .++|++|+|+++..+.+.+.... .+     .   .....+.+++++++|+||.|
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~-~~-----~---~~~~~~~~~~~~~~Dvvi~~   88 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE-LG-----I---AIAYLDLEELLAEADLIINT   88 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh-cc-----c---ceeecchhhccccCCEEEeC
Confidence            578999999999999999999885 27899999999887776554211 00     0   01223666667899999999


Q ss_pred             CccccH--HHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFS--SSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v--~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|....  ..+... ...+++++++++++
T Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~~~v~D~~  116 (155)
T cd01065          89 TPVGMKPGDELPLP-PSLLKPGGVVYDVV  116 (155)
T ss_pred             cCCCCCCCCCCCCC-HHHcCCCCEEEEcC
Confidence            997653  222111 22357889999986

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.46  E-value=1.4e-06  Score=85.83  Aligned_cols=93  Identities=13%  Similarity=0.182  Sum_probs=68.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~-V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||||+|||+|.||..++..|.+.+.+++ +.+++|++++++.+.+..             +....++.++.+.++|+|++
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-------------~~~~~~~~~ell~~~DvVvi   67 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-------------GAKACLSIDELVEDVDLVVE   67 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-------------CCeeECCHHHHhcCCCEEEE
Confidence            4799999999999999999987531255 457899998877765521             12355688887789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      |++...+.+++..+..   .|..++.++.|
T Consensus        68 ~a~~~~~~~~~~~al~---~Gk~Vvv~s~g   94 (265)
T PRK13304         68 CASVNAVEEVVPKSLE---NGKDVIIMSVG   94 (265)
T ss_pred             cCChHHHHHHHHHHHH---cCCCEEEEchH
Confidence            9998888887766554   34445555543

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.42  E-value=7.5e-07  Score=91.79  Aligned_cols=93  Identities=18%  Similarity=0.199  Sum_probs=72.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|||||+|+||..+|.+|..-|  ++|.+||+.....    . +             .. ...++++++++||+|+++
T Consensus       116 gktvGIIG~G~IG~~va~~l~a~G--~~V~~~Dp~~~~~----~-~-------------~~-~~~~l~ell~~aDiV~lh  174 (381)
T PRK00257        116 ERTYGVVGAGHVGGRLVRVLRGLG--WKVLVCDPPRQEA----E-G-------------DG-DFVSLERILEECDVISLH  174 (381)
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCccccc----c-c-------------Cc-cccCHHHHHhhCCEEEEe
Confidence            579999999999999999999888  9999999854311    0 1             01 123788988999999999


Q ss_pred             Cccc-----cHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          207 MPVQ-----FSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       207 Vp~~-----~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      +|..     .+..++ .+....+++++++|+++.|-..++
T Consensus       175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde  214 (381)
T PRK00257        175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN  214 (381)
T ss_pred             CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence            9953     366666 346778999999999999876653

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.40  E-value=1.6e-06  Score=85.66  Aligned_cols=92  Identities=21%  Similarity=0.215  Sum_probs=67.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ++||+|||+|.||..++..|.+...+++|. +|+|++++++.+.+....            ....++.++++.++|+|++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~------------~~~~~~~eell~~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR------------PPPVVPLDQLATHADIVVE   73 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC------------CcccCCHHHHhcCCCEEEE
Confidence            589999999999999999998741127776 789998887766553100            1234578888889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+|...+.++...+.   +.|..++..+
T Consensus        74 ~tp~~~h~e~~~~aL---~aGk~Vi~~s   98 (271)
T PRK13302         74 AAPASVLRAIVEPVL---AAGKKAIVLS   98 (271)
T ss_pred             CCCcHHHHHHHHHHH---HcCCcEEEec
Confidence            999888877776654   3466565554

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.40  E-value=9.6e-07  Score=90.79  Aligned_cols=93  Identities=16%  Similarity=0.196  Sum_probs=72.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|||||+|+||+.+|.+|..-|  ++|.+||+....      .+..            . ...++++++++||+|+++
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~G--~~V~~~dp~~~~------~~~~------------~-~~~~L~ell~~sDiI~lh  174 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEALG--IKTLLCDPPRAD------RGDE------------G-DFRSLDELVQEADILTFH  174 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCcccc------cccc------------c-ccCCHHHHHhhCCEEEEe
Confidence            679999999999999999999877  999999975321      0100            0 123788999999999999


Q ss_pred             Ccccc-----HHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          207 MPVQF-----SSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       207 Vp~~~-----v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      +|...     +..++ ++....+++++++|+++.|-..++
T Consensus       175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe  214 (378)
T PRK15438        175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDN  214 (378)
T ss_pred             CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCH
Confidence            99533     66666 456778999999999999876653

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.39  E-value=1.8e-06  Score=86.61  Aligned_cols=105  Identities=20%  Similarity=0.302  Sum_probs=68.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||||+|||+|.||..+|..++..|.. +|.++|++++.++.....-....  ........++.++|.+ ++++||+||++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~--~~~~~~~~i~~~~d~~-~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAA--PVEGFDTKITGTNDYE-DIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhh--hhcCCCcEEEeCCCHH-HHCCCCEEEEC
Confidence            57999999999999999999998832 99999998865543221100000  0001122455556775 47999999998


Q ss_pred             Ccc----------------ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~----------------~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +..                ..+.++++++.+..+ +.++|..+|..
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~-~~~viv~tNP~  122 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP-DAIVIVVTNPV  122 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence            631                125566666777664 56677777744

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.36  E-value=1.6e-06  Score=86.37  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=69.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..+|..|...|  .+|++++|++++.+.+.+.+..            .....++.+.++++|+||.+
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDiVint  216 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARITEMGLI------------PFPLNKLEEKVAEIDIVINT  216 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCCe------------eecHHHHHHHhccCCEEEEC
Confidence            469999999999999999999988  8999999998776665543321            01123566778899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|..-+.   .+....++++.++|+++.
T Consensus       217 ~P~~ii~---~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       217 IPALVLT---ADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence            9975321   234556788999999874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.34  E-value=1.4e-06  Score=91.47  Aligned_cols=79  Identities=22%  Similarity=0.269  Sum_probs=58.8

Q ss_pred             CeEEEECcchHHHHHHH--HH----HhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          128 NKVVVLGGGSFGTAMAA--HV----ANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~--~L----a~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +||+|||+|+||.+++.  .+    +.+|  ++|.+||++++.++.+.....  .+......+.++..++|.++++++||
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g--~eV~L~Did~e~l~~~~~~~~--~~~~~~~~~~~I~~ttD~~eal~~AD   76 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSG--STIALMDIDEERLETVEILAK--KIVEELGAPLKIEATTDRREALDGAD   76 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCC--CEEEEECCCHHHHHHHHHHHH--HHHHhcCCCeEEEEeCCHHHHhcCCC
Confidence            58999999999998766  34    3445  899999999988776655321  12222223456788899999999999


Q ss_pred             EEEEcCccc
Q 012720          202 YCLHAMPVQ  210 (458)
Q Consensus       202 iVilaVp~~  210 (458)
                      +||++++..
T Consensus        77 ~Vi~ai~~~   85 (423)
T cd05297          77 FVINTIQVG   85 (423)
T ss_pred             EEEEeeEec
Confidence            999999953

linked to 3D####ucture

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.31  E-value=3.6e-05  Score=73.65  Aligned_cols=160  Identities=16%  Similarity=0.123  Sum_probs=102.1

Q ss_pred             CCeEEEECcchH--------------------HHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCC
Q 012720          127 TNKVVVLGGGSF--------------------GTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQ  181 (458)
Q Consensus       127 ~~kI~IIGaG~m--------------------G~~iA~~La~aG~~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~  181 (458)
                      +|||+|.|+|+-                    |..||..++++|  |||.+.+.+.+     +.+++...|         
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAG--HDVVLaePn~d~~dd~~w~~vedAG---------   69 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAG--HDVVLAEPNRDIMDDEHWKRVEDAG---------   69 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcC--CcEEeecCCccccCHHHHHHHHhcC---------
Confidence            478999999973                    788999999999  99999987653     344444443         


Q ss_pred             CCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE
Q 012720          182 KLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI  260 (458)
Q Consensus       182 ~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~  260 (458)
                           +.+++|-.++++.+++.++.+|- ..+-.+.++|.+++++|.+|.+.- ++++-   .+..-++..+.....++.
T Consensus        70 -----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTC-T~sp~---vLy~~LE~~Lr~kR~dVG  140 (340)
T COG4007          70 -----VEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTC-TVSPV---VLYYSLEGELRTKREDVG  140 (340)
T ss_pred             -----cEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccc-cCchh---HHHHHhhhhhcCchhhcC
Confidence                 56776767788999999999996 478889999999999998876532 34432   122223222221111111


Q ss_pred             EEE-----CcccHHH---HhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC
Q 012720          261 ALS-----GPSFALE---LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS  307 (458)
Q Consensus       261 vl~-----gP~~a~e---i~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~  307 (458)
                      +.+     =|+...+   +..|..+.. ..-..++..+++.++.++.|..++..+
T Consensus       141 vssmHPAgvPGtp~h~~yviagr~t~g-~elATeEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         141 VSSMHPAGVPGTPQHGHYVIAGRSTEG-KELATEEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             ccccCCCCCCCCCCCceEEEeccCCCc-eeeccHHHHHHHHHHHHhcCCceEecC
Confidence            111     1222221   011111110 011247889999999999999988764

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.30  E-value=4.4e-06  Score=83.93  Aligned_cols=103  Identities=18%  Similarity=0.225  Sum_probs=69.2

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|||+|.||+.+|..|+..|  + +|+++|+.++..+...-.-....  ........++.++|.++ ++++|+||++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g--~~~VvlvDi~~~l~~g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~~~aDiVIit   76 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKE--LADLVLLDVVEGIPQGKALDMYEAS--PVGGFDTKVTGTNNYAD-TANSDIVVIT   76 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcC--CCeEEEEeCCCChhHHHHHhhhhhh--hccCCCcEEEecCCHHH-hCCCCEEEEc
Confidence            69999999999999999999988  5 89999997654331110000000  00111235667788877 7899999999


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +...                .++++++++.++. ++.++|..+|-.
T Consensus        77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~  121 (305)
T TIGR01763        77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL  121 (305)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence            9831                2444556666664 567788888744

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.22  E-value=4e-06  Score=84.53  Aligned_cols=93  Identities=20%  Similarity=0.318  Sum_probs=66.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||+|.||..++..+.. .+ ..+|++|+|++++++++.+.-.. .       ...+.+..+++++++++|+|+.
T Consensus       125 ~~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~-~-------g~~~~~~~~~~~av~~aDIVi~  195 (314)
T PRK06141        125 ASRLLVVGTGRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRA-Q-------GFDAEVVTDLEAAVRQADIISC  195 (314)
T ss_pred             CceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHh-c-------CCceEEeCCHHHHHhcCCEEEE
Confidence            4789999999999999986654 23 27899999999998888764210 0       0125566788888999999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+++.  ..++.  ...+++|++ |++.
T Consensus       196 aT~s~--~pvl~--~~~l~~g~~-i~~i  218 (314)
T PRK06141        196 ATLST--EPLVR--GEWLKPGTH-LDLV  218 (314)
T ss_pred             eeCCC--CCEec--HHHcCCCCE-EEee
Confidence            99865  22222  245678884 4444

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=2.9e-06  Score=84.34  Aligned_cols=71  Identities=24%  Similarity=0.294  Sum_probs=59.2

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||.| .||.+||.+|.++|  +.|++|++...                            +++++++.||+||.
T Consensus       159 Gk~V~vIG~s~ivG~PmA~~L~~~g--atVtv~~~~t~----------------------------~l~e~~~~ADIVIs  208 (301)
T PRK14194        159 GKHAVVIGRSNIVGKPMAALLLQAH--CSVTVVHSRST----------------------------DAKALCRQADIVVA  208 (301)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCC--CEEEEECCCCC----------------------------CHHHHHhcCCEEEE
Confidence            6799999996 99999999999999  99999987531                            56777889999999


Q ss_pred             cCccc-cHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQ-FSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~-~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |++.. .+...+      +++|++||+++
T Consensus       209 avg~~~~v~~~~------ik~GaiVIDvg  231 (301)
T PRK14194        209 AVGRPRLIDADW------LKPGAVVIDVG  231 (301)
T ss_pred             ecCChhcccHhh------ccCCcEEEEec
Confidence            99964 344332      78899999986

>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D

Probab=98.20  E-value=8e-07  Score=76.97  Aligned_cols=96  Identities=24%  Similarity=0.282  Sum_probs=64.5

Q ss_pred             HHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccccc--CCcchhhhhccCCCccchHHHHhhC-----CCChHHH
Q 012720          328 IVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRLGS-----GEKLDDI  400 (458)
Q Consensus       328 ~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~--g~gd~~~t~~~~~srn~~~g~~l~~-----g~~~e~~  400 (458)
                      .+..+|+.+|.+......++.|+..+|++.|+++++++++.  +.+....      .+++ ....+.+     +++++  
T Consensus         2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~------~~~~-~~~~~~~~~~~~~f~l~--   72 (122)
T PF14833_consen    2 AGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWM------LKNR-APRMILNGDFDPGFSLD--   72 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHH------HHHH-HHHHHHTTTTCSSSBHH--
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchH------HHhh-hhhhhhcccCCccchhH--
Confidence            44567788899999999999999999999999999998752  2222110      0111 1111222     23333  


Q ss_pred             HhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720          401 LSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN  440 (458)
Q Consensus       401 ~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~  440 (458)
                              ...||+++++++|++.|+++|+.+.+.+++..
T Consensus        73 --------~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~  104 (122)
T PF14833_consen   73 --------LARKDLRLALDLAKEAGVPLPLGSAARQLYQA  104 (122)
T ss_dssp             --------HHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred             --------hhccHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence                    34699999999999999999999999888743

...

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.19  E-value=1e-05  Score=80.93  Aligned_cols=91  Identities=19%  Similarity=0.201  Sum_probs=69.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+|++|||+|.+|..++..|...|  .+|++++|++++.+.....|...            ...+++.+.+.++|+||.|
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~~G~~~------------~~~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITEMGLSP------------FHLSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCee------------ecHHHHHHHhCCCCEEEEC
Confidence            479999999999999999999988  89999999987766665544211            1113566778899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|...+   -++....++++.+||++..
T Consensus       218 ~p~~~i---~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        218 IPALVL---TKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             CChhhh---hHHHHHcCCCCcEEEEEcc
Confidence            986422   2345566788999999863

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.17  E-value=1.1e-05  Score=71.82  Aligned_cols=116  Identities=18%  Similarity=0.247  Sum_probs=72.4

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|||+ |.+|..+|..|...+...++.++|++++.++....+-.+....    .+.+.....+..+.++++|+||++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~----~~~~~~i~~~~~~~~~~aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP----LPSPVRITSGDYEALKDADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG----STEEEEEEESSGGGGTTESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh----cccccccccccccccccccEEEEe
Confidence            79999999 9999999999999886678999999987655333211000000    111233333445568999999998


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      .-..                -++++.+.+.++- ++.+++..+|-++     .+...+.+..+
T Consensus        77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-----~~t~~~~~~s~  133 (141)
T PF00056_consen   77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-----VMTYVAQKYSG  133 (141)
T ss_dssp             TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-----HHHHHHHHHHT
T ss_pred             ccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-----HHHHHHHHhhC
Confidence            7431                1333444555555 5667777777433     34455555433

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.17  E-value=2.9e-05  Score=66.32  Aligned_cols=106  Identities=19%  Similarity=0.250  Sum_probs=74.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVi  204 (458)
                      +||+|||+|.+|......+.+...+.+|. +++++++..+.+.+..             ++..++|.+++++  +.|+|+
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~V~   67 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-------------GIPVYTDLEELLADEDVDAVI   67 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-------------TSEEESSHHHHHHHTTESEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-------------cccchhHHHHHHHhhcCCEEE
Confidence            48999999999999998888874336665 7899998888775532             2346778888876  799999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc--chhhhHHHHHHH
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQIIPQ  250 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~--~t~~~l~e~l~~  250 (458)
                      +++|.....+.+..+..   .|..| .+-|-+..  ++.+.+.+..++
T Consensus        68 I~tp~~~h~~~~~~~l~---~g~~v-~~EKP~~~~~~~~~~l~~~a~~  111 (120)
T PF01408_consen   68 IATPPSSHAEIAKKALE---AGKHV-LVEKPLALTLEEAEELVEAAKE  111 (120)
T ss_dssp             EESSGGGHHHHHHHHHH---TTSEE-EEESSSSSSHHHHHHHHHHHHH
T ss_pred             EecCCcchHHHHHHHHH---cCCEE-EEEcCCcCCHHHHHHHHHHHHH
Confidence            99999887777766554   24433 35554433  333444444433

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.16  E-value=1.4e-05  Score=80.44  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=69.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..++..|...| ..+|++++|+.++++.+.+....           .+...++..+++.++|+||.|
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g~-----------~~~~~~~~~~~l~~aDvVi~a  245 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELGG-----------NAVPLDELLELLNEADVVISA  245 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcCC-----------eEEeHHHHHHHHhcCCEEEEC
Confidence            589999999999999999998865 27899999999887777654110           111123556777899999999


Q ss_pred             CccccHHHHHHhhhhcC-CCCCeEEEecc
Q 012720          207 MPVQFSSSFLEGISDYV-DPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l-~~~~ivV~~sn  234 (458)
                      ++......++..+.... .++.++|+++.
T Consensus       246 t~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         246 TGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             CCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            99866655555543322 35678889885

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.15  E-value=8.7e-06  Score=79.78  Aligned_cols=94  Identities=21%  Similarity=0.296  Sum_probs=76.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+||+|||.|+-|.+=|.+|.++|  .+|++--|.... .+...+.|.              .+ -+.+|+++.+|+|++
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSG--lnViiGlr~g~~s~~kA~~dGf--------------~V-~~v~ea~k~ADvim~   80 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSG--LNVIIGLRKGSSSWKKAKEDGF--------------KV-YTVEEAAKRADVVMI   80 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcC--CcEEEEecCCchhHHHHHhcCC--------------Ee-ecHHHHhhcCCEEEE
Confidence            579999999999999999999999  888876666543 455555553              22 278899999999999


Q ss_pred             cCccccHHHHHH-hhhhcCCCCCeEEEeccCCCc
Q 012720          206 AMPVQFSSSFLE-GISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       206 aVp~~~v~~vl~-~i~~~l~~~~ivV~~snGi~~  238 (458)
                      -+|+....++++ +|.|.+++|..+. .+-|+..
T Consensus        81 L~PDe~q~~vy~~~I~p~Lk~G~aL~-FaHGfNi  113 (338)
T COG0059          81 LLPDEQQKEVYEKEIAPNLKEGAALG-FAHGFNI  113 (338)
T ss_pred             eCchhhHHHHHHHHhhhhhcCCceEE-eccccce
Confidence            999999999997 7999999998654 5557765

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.15  E-value=7.9e-06  Score=71.08  Aligned_cols=122  Identities=19%  Similarity=0.247  Sum_probs=73.1

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|+|+ |.||..++..+.+.. ++++. +++|......     |.....+.+.. +.++.+++++++++..+|++|-
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~-~~~lv~~v~~~~~~~~-----g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESP-GFELVGAVDRKPSAKV-----GKDVGELAGIG-PLGVPVTDDLEELLEEADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHST-TEEEEEEEETTTSTTT-----TSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcC-CcEEEEEEecCCcccc-----cchhhhhhCcC-CcccccchhHHHhcccCCEEEE
Confidence            68999999 999999999999843 27755 5677762100     11111111111 3456678899999989999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECccc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF  267 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~  267 (458)
                      ++-...+.+.++...++   +..+|..+.|+..+..    +.+++. ..   ...++..|++
T Consensus        74 fT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~----~~l~~~-a~---~~~vl~a~Nf  124 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQI----DELEEL-AK---KIPVLIAPNF  124 (124)
T ss_dssp             ES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHH----HHHHHH-TT---TSEEEE-SSS
T ss_pred             cCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHH----HHHHHH-hc---cCCEEEeCCC
Confidence            88666666666665543   6777777778875433    233332 22   1456776654

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.14  E-value=6.3e-06  Score=77.50  Aligned_cols=170  Identities=12%  Similarity=0.206  Sum_probs=101.7

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----------cCCCccCCCCCC----CCceE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRYFPEQKL----PENVI  188 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-----------g~~~~~~~~~~l----~~~i~  188 (458)
                      |..++.|+|||+|.||+.+|...+.+|  ++|+++|++++.+.+..+.           +..........+    -..++
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg--~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~   85 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSG--LNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK   85 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcC--CceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence            444678999999999999999999999  9999999999866543321           111000000000    12355


Q ss_pred             EeCCHHhhcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH--HhCCCCCCEEEEEC
Q 012720          189 ATTDAKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSG  264 (458)
Q Consensus       189 a~~~~~ea~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~--~lg~~~~~~~vl~g  264 (458)
                      ..++..++++++|+||-++-.  +-...++++|....++.+++.+-+..+...   .++..+.+  +++.     -....
T Consensus        86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt---~ia~~~~~~srf~G-----lHFfN  157 (298)
T KOG2304|consen   86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLT---DIASATQRPSRFAG-----LHFFN  157 (298)
T ss_pred             HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHH---HHHhhccChhhhce-----eeccC
Confidence            677888899999999998864  345667788888888888776655433321   11111111  1111     12234


Q ss_pred             cccHH---HHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChH
Q 012720          265 PSFAL---ELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVT  310 (458)
Q Consensus       265 P~~a~---ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~  310 (458)
                      |.-..   |+..+.       .-.++.+..+..+-+..|....-..|..
T Consensus       158 PvPvMKLvEVir~~-------~TS~eTf~~l~~f~k~~gKttVackDtp  199 (298)
T KOG2304|consen  158 PVPVMKLVEVIRTD-------DTSDETFNALVDFGKAVGKTTVACKDTP  199 (298)
T ss_pred             CchhHHHhhhhcCC-------CCCHHHHHHHHHHHHHhCCCceeecCCC
Confidence            43222   222111       1246777777777776676655555543

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.12  E-value=1.7e-05  Score=80.10  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.||..+|..|+..|. .+|.++|++++.++...-......  .-......+..+++.+ ++++||+||++
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~--~~~~~~~~i~~~~d~~-~l~~ADiVVit   80 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFS--TLVGSNINILGTNNYE-DIKDSDVVVIT   80 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhc--cccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence            5799999999999999999998874 589999998765432211110000  0011123455556776 57999999999


Q ss_pred             C--ccc--------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 M--PVQ--------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 V--p~~--------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .  +..              -+.++++.+.++. ++.+++..+|..
T Consensus        81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~  125 (319)
T PTZ00117         81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL  125 (319)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence            9  321              2445666666664 566777777744

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.11  E-value=1.5e-05  Score=80.56  Aligned_cols=106  Identities=21%  Similarity=0.301  Sum_probs=69.3

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      |-+.+||+|||+|.||..+|..++..|. .+|.++|++++.++  .+...+..    .-...+..++.++|.+ ++++||
T Consensus         3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~----~~~~~~~~I~~~~d~~-~l~~aD   76 (321)
T PTZ00082          3 MIKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSN----VIAGSNSKVIGTNNYE-DIAGSD   76 (321)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhh----hccCCCeEEEECCCHH-HhCCCC
Confidence            3345799999999999999999998883 38999999887542  22111110    0011123466667875 579999


Q ss_pred             EEEEcCcc---------------------ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          202 YCLHAMPV---------------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       202 iVilaVp~---------------------~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +||++.-.                     .-+.++++++.++.+ +.+++..+|..
T Consensus        77 iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p-~a~~iv~sNP~  131 (321)
T PTZ00082         77 VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCP-NAFVIVITNPL  131 (321)
T ss_pred             EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence            99997621                     014555566666664 45777777744

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.03  E-value=1e-05  Score=83.91  Aligned_cols=94  Identities=17%  Similarity=0.291  Sum_probs=72.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~------~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      .++|+|||.|++|.+-|..|...|  ++|++--|..      +..+...+.|.              .+ .+.+|+++.|
T Consensus        36 gKtIaIIGyGSqG~AqAlNLrdSG--vnVvvglr~~~id~~~~s~~kA~~dGF--------------~v-~~~~Ea~~~A   98 (487)
T PRK05225         36 GKKIVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KV-GTYEELIPQA   98 (487)
T ss_pred             CCEEEEEccCHHHHHHhCCCcccc--ceeEEeccccccccccchHHHHHhcCC--------------cc-CCHHHHHHhC
Confidence            489999999999999999999999  8998655542      23333333342              12 3688899999


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      |+|++.+|......+.+++.+++++|..+. .+-|+..
T Consensus        99 DvVviLlPDt~q~~v~~~i~p~LK~Ga~L~-fsHGFni  135 (487)
T PRK05225         99 DLVINLTPDKQHSDVVRAVQPLMKQGAALG-YSHGFNI  135 (487)
T ss_pred             CEEEEcCChHHHHHHHHHHHhhCCCCCEEE-ecCCcee
Confidence            999999998877778889999999998765 4447654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.02  E-value=1.9e-05  Score=81.23  Aligned_cols=86  Identities=19%  Similarity=0.278  Sum_probs=62.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||||.|||+|.+|+..|..|+++|. .+|++.+|+.++++++..... ..+.   ..+  .+.-...+.+++++.|+||.
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~---~~v--D~~d~~al~~li~~~d~VIn   74 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEA---LQV--DAADVDALVALIKDFDLVIN   74 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcccccee---EEe--cccChHHHHHHHhcCCEEEE
Confidence            5899999999999999999999985 899999999999999976531 1100   000  01111234567889999999


Q ss_pred             cCccccHHHHHHh
Q 012720          206 AMPVQFSSSFLEG  218 (458)
Q Consensus       206 aVp~~~v~~vl~~  218 (458)
                      |.|.+....+++.
T Consensus        75 ~~p~~~~~~i~ka   87 (389)
T COG1748          75 AAPPFVDLTILKA   87 (389)
T ss_pred             eCCchhhHHHHHH
Confidence            9998765555543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=1.1e-05  Score=80.14  Aligned_cols=70  Identities=21%  Similarity=0.249  Sum_probs=57.6

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~-r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .++|+||| .|.||.+||.+|.++|  +.|++|+ |++                             +++++++.+|+||
T Consensus       158 Gk~V~viGrs~~mG~PmA~~L~~~g--~tVtv~~~rT~-----------------------------~l~e~~~~ADIVI  206 (296)
T PRK14188        158 GLNAVVIGRSNLVGKPMAQLLLAAN--ATVTIAHSRTR-----------------------------DLPAVCRRADILV  206 (296)
T ss_pred             CCEEEEEcCCcchHHHHHHHHHhCC--CEEEEECCCCC-----------------------------CHHHHHhcCCEEE
Confidence            68999999 9999999999999999  9999995 543                             3456778999999


Q ss_pred             EcCcccc-HHHHHHhhhhcCCCCCeEEEec
Q 012720          205 HAMPVQF-SSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       205 laVp~~~-v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .|++... +.+.      ++++|++||++.
T Consensus       207 savg~~~~v~~~------~lk~GavVIDvG  230 (296)
T PRK14188        207 AAVGRPEMVKGD------WIKPGATVIDVG  230 (296)
T ss_pred             EecCChhhcchh------eecCCCEEEEcC
Confidence            9999643 3332      378899999985

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.02  E-value=1.7e-05  Score=70.08  Aligned_cols=95  Identities=24%  Similarity=0.335  Sum_probs=64.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+++.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+......        -.+...++..+.+.++|+||.|
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~~--------~~~~~~~~~~~~~~~~DivI~a   82 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGGVN--------IEAIPLEDLEEALQEADIVINA   82 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTGCS--------EEEEEGGGHCHHHHTESEEEE-
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCccc--------cceeeHHHHHHHHhhCCeEEEe
Confidence            5799999999999999999999982 359999999999998877531100        0122345666667899999999


Q ss_pred             Ccccc---HHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQF---SSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~---v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|...   .++.+......   -.+++++.
T Consensus        83 T~~~~~~i~~~~~~~~~~~---~~~v~Dla  109 (135)
T PF01488_consen   83 TPSGMPIITEEMLKKASKK---LRLVIDLA  109 (135)
T ss_dssp             SSTTSTSSTHHHHTTTCHH---CSEEEES-
T ss_pred             cCCCCcccCHHHHHHHHhh---hhceeccc
Confidence            99643   22222221111   14888886

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.00  E-value=3.3e-05  Score=69.93  Aligned_cols=105  Identities=16%  Similarity=0.124  Sum_probs=66.1

Q ss_pred             hhhccc-cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC
Q 012720          114 TWRSKA-KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD  192 (458)
Q Consensus       114 ~~~~~~-~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~  192 (458)
                      .+...+ .+++|...+++.|+|.|.+|..+|..|...|  .+|+++++++-++-+....|              .++. +
T Consensus         9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~alqA~~dG--------------f~v~-~   71 (162)
T PF00670_consen    9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIRALQAAMDG--------------FEVM-T   71 (162)
T ss_dssp             HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHHTT---------------EEE--
T ss_pred             HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHHHHHhhhcC--------------cEec-C
Confidence            444433 4667777889999999999999999999998  99999999986544444344              2333 6


Q ss_pred             HHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          193 AKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      .+++++.+|++|.++-...+-  -.+....++++.+|.++. ..+.
T Consensus        72 ~~~a~~~adi~vtaTG~~~vi--~~e~~~~mkdgail~n~G-h~d~  114 (162)
T PF00670_consen   72 LEEALRDADIFVTATGNKDVI--TGEHFRQMKDGAILANAG-HFDV  114 (162)
T ss_dssp             HHHHTTT-SEEEE-SSSSSSB---HHHHHHS-TTEEEEESS-SSTT
T ss_pred             HHHHHhhCCEEEECCCCcccc--CHHHHHHhcCCeEEeccC-cCce
Confidence            788999999999998865531  012334577888887765 3443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.99  E-value=5.4e-05  Score=76.27  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=69.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.+|..+|..|+..|...++.++|++++.++.....-.+...+.  .. ..+..+.|.++ +++||+||++
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~--~~-~~v~~~~dy~~-~~~adivvit   78 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL--KN-PKIEADKDYSV-TANSKVVIVT   78 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC--CC-CEEEECCCHHH-hCCCCEEEEC
Confidence            46999999999999999999988855689999998765543322111111111  11 24666678876 7999999996


Q ss_pred             Ccc-----cc-----------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPV-----QF-----------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~-----~~-----------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .-.     ..           ++++.+.+.++ .++.+++..+|-.
T Consensus        79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~  123 (312)
T cd05293          79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV  123 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence            642     11           33444556565 4566777788744

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.94  E-value=4.1e-05  Score=77.59  Aligned_cols=95  Identities=17%  Similarity=0.265  Sum_probs=67.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+++|||+|.||...+..|.......+|.+|+|+.++++.+.+.-..        +...+.++++++++++++|+|++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~--------~g~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD--------YEVPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--------hCCcEEEeCCHHHHhccCCEEEEe
Confidence            468999999999999766665432237899999999998877653110        011256678999999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|+..  .++.  ...+++|+.|..+.
T Consensus       200 T~s~~--P~~~--~~~l~~g~~v~~vG  222 (325)
T TIGR02371       200 TPSRK--PVVK--ADWVSEGTHINAIG  222 (325)
T ss_pred             cCCCC--cEec--HHHcCCCCEEEecC
Confidence            99743  1111  24567888876654

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.94  E-value=2.6e-05  Score=76.61  Aligned_cols=102  Identities=20%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             EEEECc-chHHHHHHHHHHhcC--CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          130 VVVLGG-GSFGTAMAAHVANKK--SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       130 I~IIGa-G~mG~~iA~~La~aG--~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |+|||+ |.||..+|..|+..|  ...+|.++|+++++++.....-.+...  .. ...++..++|+.+++++||+||++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~--~~-~~~~i~~~~d~~~~~~~aDiVv~t   77 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVE--PL-ADIKVSITDDPYEAFKDADVVIIT   77 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhh--hc-cCcEEEECCchHHHhCCCCEEEEC
Confidence            689999 999999999999876  446899999988766554432111110  11 134577778877889999999996


Q ss_pred             Ccc----------------ccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          207 MPV----------------QFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       207 Vp~----------------~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      .-.                ....++++.+.++. ++.+++..+|-
T Consensus        78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP  121 (263)
T cd00650          78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNP  121 (263)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence            522                12455556666655 56677777763

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.91  E-value=4e-05  Score=76.78  Aligned_cols=102  Identities=20%  Similarity=0.256  Sum_probs=65.0

Q ss_pred             EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc
Q 012720          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (458)
Q Consensus       130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~  209 (458)
                      |+|||+|.||..+|..|+..|.. +|+++|++++..+...-.-...  .........++.++|.+ ++++||+||+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~--~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQA--APILGSDTKVTGTNDYE-DIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHh--hhhcCCCeEEEEcCCHH-HhCCCCEEEEecCC
Confidence            68999999999999999988822 9999999876543221100000  00001123455666765 48999999998731


Q ss_pred             ----------------ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          210 ----------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       210 ----------------~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                                      ....++++++.++.+ +.++|..+|-.
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p-~~~iIv~sNP~  118 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAP-NAIVIVVTNPL  118 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence                            124556667777664 55666677644

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.91  E-value=7.1e-05  Score=75.22  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=67.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVila  206 (458)
                      +||+|||+|.+|.++|..|+..|..++|.++|+++++++.+...-.+..+.    .+..... ..+.+ .++++|+||++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~----~~~~~~i~~~~~~-~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF----LPSPVKIKAGDYS-DCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc----cCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            489999999999999999999884458999999988766554321000000    0111222 24554 47899999999


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +...                -+.++.+.+.++- ++.+++..+|-+
T Consensus        76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP~  120 (306)
T cd05291          76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNPV  120 (306)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecChH
Confidence            8752                1344445565544 466777777643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.90  E-value=8.3e-05  Score=74.84  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=63.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|||+|.+|+.+|..|+..|.-.+|.++|+++++++....  .+... +..    +..+. +.+.+ .+++||+||+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~----~~~i~-~~d~~-~l~~aDiVii   73 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-FVK----PVRIY-AGDYA-DCKGADVVVI   73 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc-ccC----CeEEe-eCCHH-HhCCCCEEEE
Confidence            6899999999999999999998843589999999876542111  11110 110    11222 45654 5899999999


Q ss_pred             cCcccc----------------HHHHHHhhhhcCCCCCeEEEecc
Q 012720          206 AMPVQF----------------SSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       206 aVp~~~----------------v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |++...                ++++.+.+.++-+ +.+++..+|
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~-~giiiv~tN  117 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAP-DAILLVVTN  117 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecC
Confidence            998521                3445555666554 445555555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=97.88  E-value=3e-05  Score=76.94  Aligned_cols=123  Identities=15%  Similarity=0.198  Sum_probs=92.7

Q ss_pred             cccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720           90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus        90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .+...+++-.++.|.|++.        .+.|.++.  .+.++|||.|.+|+-.|.++..-|  ..|+.+|.-.. .+...
T Consensus       119 aR~i~~A~~s~k~g~wnr~--------~~~G~el~--GKTLgvlG~GrIGseVA~r~k~~g--m~vI~~dpi~~-~~~~~  185 (406)
T KOG0068|consen  119 ARQIGQASASMKEGKWNRV--------KYLGWELR--GKTLGVLGLGRIGSEVAVRAKAMG--MHVIGYDPITP-MALAE  185 (406)
T ss_pred             hhhcchhheeeecCceeec--------ceeeeEEe--ccEEEEeecccchHHHHHHHHhcC--ceEEeecCCCc-hHHHH
Confidence            3566667777888988872        34567777  679999999999999999998777  78888875431 22333


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHH-hhhhcCCCCCeEEEeccCCCcch
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFLE-GISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      ..|              ++.. +++|++..||+|-+-+|. .+++.++. +....+++|..||+++.|-..++
T Consensus       186 a~g--------------vq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe  243 (406)
T KOG0068|consen  186 AFG--------------VQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDE  243 (406)
T ss_pred             hcc--------------ceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceech
Confidence            333              2332 678999999999999995 66888884 35677899999999999876654

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.86  E-value=8.1e-05  Score=72.96  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=65.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +|||+|+|+ |.||..++..+.+.. ++++. +++++.+..... .             ..++..++|++++++++|+||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~-~~elvav~d~~~~~~~~~-~-------------~~~i~~~~dl~~ll~~~DvVi   65 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAE-DLELVAAVDRPGSPLVGQ-G-------------ALGVAITDDLEAVLADADVLI   65 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCcccccc-C-------------CCCccccCCHHHhccCCCEEE
Confidence            479999998 999999998887643 26766 477776543222 0             012345568888888899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcch
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+++.....+.+....+   .|..+|.-+.|+..+.
T Consensus        66 d~t~p~~~~~~~~~al~---~G~~vvigttG~s~~~   98 (257)
T PRK00048         66 DFTTPEATLENLEFALE---HGKPLVIGTTGFTEEQ   98 (257)
T ss_pred             ECCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence            88887776666655444   4555665565777553

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.85  E-value=0.00014  Score=75.97  Aligned_cols=90  Identities=17%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      +...++|+|+|+|.+|..+|..|...|  .+|+++++++.+.......|.              .+ .+.+++++.+|+|
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~G~--------------~v-~~l~eal~~aDVV  271 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMDGF--------------RV-MTMEEAAELGDIF  271 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhcCC--------------Ee-cCHHHHHhCCCEE
Confidence            334679999999999999999999888  899999999876544433331              22 2567788899999


Q ss_pred             EEcCccccHHHHHH-hhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLE-GISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~-~i~~~l~~~~ivV~~s  233 (458)
                      |.|+..   .+++. +....+++|.++++..
T Consensus       272 I~aTG~---~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        272 VTATGN---KDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             EECCCC---HHHHHHHHHhcCCCCCEEEEcC
Confidence            999854   33443 4567788899888775

>PRK15076 alpha-galactosidase; Provisional

Probab=97.85  E-value=6.2e-05  Score=79.09  Aligned_cols=81  Identities=22%  Similarity=0.279  Sum_probs=53.8

Q ss_pred             CCeEEEECcchHHHHHHH--HHH-hcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAA--HVA-NKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~--~La-~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |+||+|||+|.||.+.+.  .++ ..+. +.+|+++|+++++++.....-.  ........+..+..++|..+++++||+
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~--~~~~~~~~~~~i~~ttD~~eal~dADf   78 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR--KLAESLGASAKITATTDRREALQGADY   78 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhcCCCeEEEEECCHHHHhCCCCE
Confidence            479999999999977666  554 1111 2699999999987664332200  000111122357778898888999999


Q ss_pred             EEEcCcc
Q 012720          203 CLHAMPV  209 (458)
Q Consensus       203 VilaVp~  209 (458)
                      ||+++-.
T Consensus        79 Vv~ti~v   85 (431)
T PRK15076         79 VINAIQV   85 (431)
T ss_pred             EeEeeee
Confidence            9998764

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.84  E-value=0.00027  Score=66.69  Aligned_cols=263  Identities=13%  Similarity=0.107  Sum_probs=141.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HH-------hhcCCCccCCCCCCC---CceEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----IN-------EKHCNCRYFPEQKLP---ENVIATTD  192 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~----l~-------~~g~~~~~~~~~~l~---~~i~a~~~  192 (458)
                      .-||+|+|.|-+|+.+|..++..|  ++|.+||..++++..    +.       +.|.--   +.....   .-|..+++
T Consensus         3 ~~ki~ivgSgl~g~~WAmlFAs~G--yqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lr---Gnlsa~eqla~is~t~~   77 (313)
T KOG2305|consen    3 FGKIAIVGSGLVGSSWAMLFASSG--YQVQLYDILEKQLQTALENVEKELRKLEEHGLLR---GNLSADEQLALISGTTS   77 (313)
T ss_pred             ccceeEeecccccchHHHHHhccC--ceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhc---cCccHHHHHHHHhCCcc
Confidence            468999999999999999999999  999999999876432    22       122100   001100   12445789


Q ss_pred             HHhhcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720          193 AKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e  270 (458)
                      +.|+.++|=.|--|+|..  --+.++.++...+.+.+++-+.+..+.++   .+++-+...     ..| .+.-|..+--
T Consensus        78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS---~~s~gL~~k-----~q~-lvaHPvNPPy  148 (313)
T KOG2305|consen   78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPS---KFSAGLINK-----EQC-LVAHPVNPPY  148 (313)
T ss_pred             HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChH---HHhhhhhhh-----hhe-eEecCCCCCc
Confidence            999999999999999963  46667778878787777776666556553   111211111     111 2222221110


Q ss_pred             HhccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720          271 LMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS  348 (458)
Q Consensus       271 i~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~-~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~  348 (458)
                      . - -...++.+. -.++.+++-++++.+.|-+.. ....+.|                      +.-   ..+-.+.++
T Consensus       149 f-i-PLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~G----------------------f~l---nriq~Ailn  201 (313)
T KOG2305|consen  149 F-I-PLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILG----------------------FAL---NRIQYAILN  201 (313)
T ss_pred             c-c-chheeccCCCCChhHHHHHHHHHHHhCCCCccccccccc----------------------cee---ccccHHHHH
Confidence            0 0 001112222 246788999999998885533 3222221                      011   112245778


Q ss_pred             HHHHHHHHcCCCccccccc--cCCcchhh---hhccCCCcc---chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHH
Q 012720          349 EIRWLATKMGAKPATITGL--SGTGDIML---TCFVNLSRN---RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIAL  420 (458)
Q Consensus       349 E~~~la~a~Gi~~~~~~~~--~g~gd~~~---t~~~~~srn---~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~l  420 (458)
                      |..+++..-+++..++..+  .|+|..+.   .+.-.+-..   ..+-.++..|  +..+++-+|...+. .|-..+.++
T Consensus       202 e~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLNA~Gv~dYf~Rys~~--I~aV~~t~GpiP~~-~d~~t~~kv  278 (313)
T KOG2305|consen  202 ETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLNAEGVADYFKRYSAG--ITAVLKTMGPIPDF-TDRKTANKV  278 (313)
T ss_pred             HHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcCcHHHHHHHHHhhhh--HHHHHHHcCCCCCC-cchhHHHHH
Confidence            8888877665554333222  23432211   000000000   0111122221  11233333433332 244677888


Q ss_pred             HHHcCCCCcHHHH
Q 012720          421 AQKYNVKMPVLTA  433 (458)
Q Consensus       421 A~~~gv~~P~~~~  433 (458)
                      +++.+-.+|.-..
T Consensus       279 ~~ql~~~v~~d~l  291 (313)
T KOG2305|consen  279 AEQLEPKVSLDNL  291 (313)
T ss_pred             HHHHhhccCchhH
Confidence            8888888887663

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.84  E-value=5.3e-05  Score=79.65  Aligned_cols=90  Identities=14%  Similarity=0.068  Sum_probs=68.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..++|+|||.|.+|..+|.+|...|  .+|+++++++.........|              +.. .+++++++.+|+|++
T Consensus       253 aGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~~G--------------~~~-~~leell~~ADIVI~  315 (476)
T PTZ00075        253 AGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAMEG--------------YQV-VTLEDVVETADIFVT  315 (476)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHhcC--------------cee-ccHHHHHhcCCEEEE
Confidence            4679999999999999999999888  89999999876543332223              112 267788899999999


Q ss_pred             cCccccHHHHH-HhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v~~vl-~~i~~~l~~~~ivV~~snG  235 (458)
                      ++..   ..++ .+....++++.+|+++..+
T Consensus       316 atGt---~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        316 ATGN---KDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CCCc---ccccCHHHHhccCCCcEEEEcCCC
Confidence            9753   3344 3556778899999998765

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.83  E-value=0.00015  Score=68.37  Aligned_cols=90  Identities=12%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil  205 (458)
                      .|+|+|+|+|+||..+|..|.+.|  ++|+++|++++.++.+.+.. .            ....+ .++.. .++|+++-
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~~~~~~~~~~~~-g------------~~~v~-~~~l~~~~~Dv~vp   91 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADINEEAVARAAELF-G------------ATVVA-PEEIYSVDADVFAP   91 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHc-C------------CEEEc-chhhccccCCEEEe
Confidence            579999999999999999999999  99999999998887776531 0            12222 23333 37999997


Q ss_pred             cCccc-cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |.... -..+.++++    + ..+|+.-.|+-.
T Consensus        92 ~A~~~~I~~~~~~~l----~-~~~v~~~AN~~~  119 (200)
T cd01075          92 CALGGVINDDTIPQL----K-AKAIAGAANNQL  119 (200)
T ss_pred             cccccccCHHHHHHc----C-CCEEEECCcCcc
Confidence            65543 234444443    3 457777777643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN00203 glutamyl-tRNA reductase

Probab=97.81  E-value=9.7e-05  Score=79.19  Aligned_cols=99  Identities=15%  Similarity=0.252  Sum_probs=68.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..++..|...|. .+|++++|+.++++.+.+....      ...  .+...++..+++.++|+||.|
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~g------~~i--~~~~~~dl~~al~~aDVVIsA  336 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFPD------VEI--IYKPLDEMLACAAEADVVFTS  336 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhCC------Cce--EeecHhhHHHHHhcCCEEEEc
Confidence            4789999999999999999998882 3799999999998888764211      000  011234666778999999999


Q ss_pred             Ccccc---HHHHHHhhhhcC---CCCCeEEEecc
Q 012720          207 MPVQF---SSSFLEGISDYV---DPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~---v~~vl~~i~~~l---~~~~ivV~~sn  234 (458)
                      +++..   ..+.++.+.+.-   ....++|+++-
T Consensus       337 T~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv  370 (519)
T PLN00203        337 TSSETPLFLKEHVEALPPASDTVGGKRLFVDISV  370 (519)
T ss_pred             cCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence            98632   555555553211   12347888873

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.81  E-value=9.5e-05  Score=71.05  Aligned_cols=96  Identities=19%  Similarity=0.217  Sum_probs=67.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCC---HHhh-cCCCCE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTD---AKTA-LLGADY  202 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~---~~ea-~~~aDi  202 (458)
                      |+|.|||+|.+|..+|..|.+.|  |+|++++++++.+++..........         +.. .++   ++++ +.++|+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~~~~~~~---------v~gd~t~~~~L~~agi~~aD~   69 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLADELDTHV---------VIGDATDEDVLEEAGIDDADA   69 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhhhcceEE---------EEecCCCHHHHHhcCCCcCCE
Confidence            68999999999999999999999  9999999999988875442111000         000 112   2333 568999


Q ss_pred             EEEcCccccHHHHHHhhhh-cCCCCCeEEEecc
Q 012720          203 CLHAMPVQFSSSFLEGISD-YVDPGLPFISLSK  234 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~-~l~~~~ivV~~sn  234 (458)
                      ++.++..+.+..++-.+.. .+.-..+++-..+
T Consensus        70 vva~t~~d~~N~i~~~la~~~~gv~~viar~~~  102 (225)
T COG0569          70 VVAATGNDEVNSVLALLALKEFGVPRVIARARN  102 (225)
T ss_pred             EEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence            9999998877777766643 3444455555553

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.79  E-value=9.3e-05  Score=63.84  Aligned_cols=100  Identities=19%  Similarity=0.307  Sum_probs=64.0

Q ss_pred             eEEEECc-chHHHHHHHHHHhc-CCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          129 KVVVLGG-GSFGTAMAAHVANK-KSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       129 kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||+|+|+ |.+|..++..|.+. +  +++..+ +++++..+.+...+....   .... ... ...+.+  ..++|+||+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~--~~l~av~~~~~~~~~~~~~~~~~~~---~~~~-~~~-~~~~~~--~~~~DvV~~   71 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPD--FEVVALAASARSAGKRVSEAGPHLK---GEVV-LEL-EPEDFE--ELAVDIVFL   71 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCC--ceEEEEEechhhcCcCHHHHCcccc---cccc-ccc-ccCChh--hcCCCEEEE
Confidence            6999995 99999999999985 4  677755 655433333333221100   0000 000 001222  248999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+|.....+++..+.+.+.+|++||+++..+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~  103 (122)
T smart00859       72 ALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFR  103 (122)
T ss_pred             cCCcHHHHHHHHHHHhhhcCCCEEEECCcccc
Confidence            99999888887766666788999999995443

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.77  E-value=0.00016  Score=75.11  Aligned_cols=91  Identities=15%  Similarity=0.087  Sum_probs=68.8

Q ss_pred             cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      ...++|+|+|+|.+|..+|..+...|  .+|+++++++.+.......|.              .+ .+.+++++.+|+||
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~~G~--------------~v-~~leeal~~aDVVI  255 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAMDGF--------------RV-MTMEEAAKIGDIFI  255 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHhcCC--------------Ee-CCHHHHHhcCCEEE
Confidence            34679999999999999999999888  899999999876544443332              12 24567789999999


Q ss_pred             EcCccccHHHHHH-hhhhcCCCCCeEEEeccC
Q 012720          205 HAMPVQFSSSFLE-GISDYVDPGLPFISLSKG  235 (458)
Q Consensus       205 laVp~~~v~~vl~-~i~~~l~~~~ivV~~snG  235 (458)
                      .++..   ..++. .....++++.++++...+
T Consensus       256 taTG~---~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       256 TATGN---KDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             ECCCC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence            98864   34443 356778899999888754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.76  E-value=0.00029  Score=66.56  Aligned_cols=94  Identities=18%  Similarity=0.253  Sum_probs=67.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |+|++||+|++|..+...+-+.-.++ -|.+|||+.+++..+.+.-.             ....++++|.+.+.|+++-|
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~-------------~~~~s~ide~~~~~DlvVEa   67 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG-------------RRCVSDIDELIAEVDLVVEA   67 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC-------------CCccccHHHHhhccceeeee
Confidence            68999999999999998887531113 46789999998887765311             11225788888999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      -..+++++...+++.   .|.-++-++-|--
T Consensus        68 AS~~Av~e~~~~~L~---~g~d~iV~SVGAL   95 (255)
T COG1712          68 ASPEAVREYVPKILK---AGIDVIVMSVGAL   95 (255)
T ss_pred             CCHHHHHHHhHHHHh---cCCCEEEEechhc
Confidence            999999988877655   3433444444443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.75  E-value=0.00012  Score=74.10  Aligned_cols=94  Identities=11%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..+++|||+|.+|...+..++. .+. .+|.+|+|++++++++.+.-.. .      ++..+...++.+++++++|+|+.
T Consensus       127 ~~~v~iiGaG~~a~~~~~al~~~~~~-~~v~v~~r~~~~a~~~~~~~~~-~------~~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        127 AKTLCLIGTGGQAKGQLEAVLAVRDI-ERVRVYSRTFEKAYAFAQEIQS-K------FNTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCc-cEEEEECCCHHHHHHHHHHHHH-h------cCCcEEEeCCHHHHHhcCCEEEE
Confidence            4689999999999988877754 332 6899999999988877653110 0      01124556788889999999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+|+..  .++.   ..+++|+.|+.+.
T Consensus       199 aT~s~~--p~i~---~~l~~G~hV~~iG  221 (325)
T PRK08618        199 VTNAKT--PVFS---EKLKKGVHINAVG  221 (325)
T ss_pred             ccCCCC--cchH---HhcCCCcEEEecC
Confidence            999763  2332   4567898887664

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.75  E-value=0.0003  Score=69.28  Aligned_cols=125  Identities=16%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHH-HH-HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPA-VC-QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~-v~~r~~~-~~-e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ||||+|+| +|.||..++..+.+.. ++++. +++|... .. +.+.+.       .+. .+.++.+++|++++...+|+
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~~~~~~-------~~~-~~~gv~~~~d~~~l~~~~Dv   71 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGTDAGEL-------AGI-GKVGVPVTDDLEAVETDPDV   71 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCCCHHHh-------cCc-CcCCceeeCCHHHhcCCCCE
Confidence            37999999 6999999999998652 26766 4675432 11 011110       000 01135667788886557899


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~  269 (458)
                      ||.++++..+.+.+.....   .|..+|..+.|+..+..+.+.+..++      ....++.+|++.-
T Consensus        72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~l~~aA~~------~g~~v~~a~NfSl  129 (266)
T TIGR00036        72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQELADLAEK------AGIAAVIAPNFSI  129 (266)
T ss_pred             EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHhc------CCccEEEECcccH
Confidence            9999998877777665544   46666666668766543333333222      1235667776654

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.74  E-value=0.00033  Score=73.49  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhc-------CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANK-------KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~a-------G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      ..||+|||+ |.+|..+|..|+..       +.-.++.++|+++++++...-+-.+..+    .+...+.+..+..+.++
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~----~~~~~v~i~~~~ye~~k  175 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY----PLLREVSIGIDPYEVFQ  175 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh----hhcCceEEecCCHHHhC
Confidence            459999999 99999999999987       5223788899988766543322111100    11123554444445689


Q ss_pred             CCCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          199 GADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       199 ~aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++|+||++--..                -++++.+.|.++..++.++|.++|-+
T Consensus       176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv  229 (444)
T PLN00112        176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC  229 (444)
T ss_pred             cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence            999999976431                13444455555445677888788754

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.73  E-value=0.00023  Score=70.11  Aligned_cols=93  Identities=16%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||||+|||+|+||..++..|.+.. +.++.. +++... .+...+..           ..++.+++|.+++..+.|+|+.
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~-~~~l~~v~~~~~~-~~~~~~~~-----------~~~~~~~~d~~~l~~~~DvVve   67 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDP-DLRVDWVIVPEHS-IDAVRRAL-----------GEAVRVVSSVDALPQRPDLVVE   67 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCC-CceEEEEEEcCCC-HHHHhhhh-----------ccCCeeeCCHHHhccCCCEEEE
Confidence            479999999999999999998753 255553 444322 12221110           0124566788776456899999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      |++...+.+....+..   .|..++..+.|
T Consensus        68 ~t~~~~~~e~~~~aL~---aGk~Vvi~s~~   94 (265)
T PRK13303         68 CAGHAALKEHVVPILK---AGIDCAVISVG   94 (265)
T ss_pred             CCCHHHHHHHHHHHHH---cCCCEEEeChH
Confidence            9998877666655543   46667766655

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.73  E-value=0.0002  Score=71.88  Aligned_cols=92  Identities=12%  Similarity=0.124  Sum_probs=67.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||+|.+|...+..+.. .+. .+|.+|+|++++++++.++-.. .       ...+. .++.++++.++|+|+.
T Consensus       125 ~~~v~IiGaG~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~-~-------~~~~~-~~~~~~av~~aDiVit  194 (304)
T PRK07340        125 PGDLLLIGTGVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARA-L-------GPTAE-PLDGEAIPEAVDLVVT  194 (304)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHh-c-------CCeeE-ECCHHHHhhcCCEEEE
Confidence            4689999999999999999975 342 5799999999988887764211 0       01122 4678888999999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+|+..  .++.   ..+++|+.|..+.
T Consensus       195 aT~s~~--Pl~~---~~~~~g~hi~~iG  217 (304)
T PRK07340        195 ATTSRT--PVYP---EAARAGRLVVAVG  217 (304)
T ss_pred             ccCCCC--ceeC---ccCCCCCEEEecC
Confidence            999753  2222   2367898877664

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.71  E-value=0.00021  Score=71.60  Aligned_cols=101  Identities=14%  Similarity=0.191  Sum_probs=66.8

Q ss_pred             EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc
Q 012720          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (458)
Q Consensus       130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~  209 (458)
                      |+|||+|.+|+.+|..|+..|.-.+++++|+++++++.....-.+....  .. ...+...++.+ .+++||+||++...
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~--~~-~~~i~~~~~~~-~l~~aDiVIitag~   76 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAF--LA-TGTIVRGGDYA-DAADADIVVITAGA   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccc--cC-CCeEEECCCHH-HhCCCCEEEEcCCC
Confidence            6899999999999999998875468999999987766554421111100  01 12344445654 58999999998874


Q ss_pred             cc----------------HHHHHHhhhhcCCCCCeEEEeccC
Q 012720          210 QF----------------SSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       210 ~~----------------v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      ..                ++++.+.|.++- ++.+++..+|-
T Consensus        77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP  117 (300)
T cd00300          77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP  117 (300)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence            21                444555566655 56677777763

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.70  E-value=0.00025  Score=69.92  Aligned_cols=100  Identities=14%  Similarity=0.188  Sum_probs=66.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil  205 (458)
                      .+++.|+|+|.+|.+++..|++.|  ++|++++|+.++++.+.+.-..   .+      .+... +.++ ...++|+||.
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g--~~v~v~~R~~~~~~~la~~~~~---~~------~~~~~-~~~~~~~~~~DivIn  184 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKAD--CNVIIANRTVSKAEELAERFQR---YG------EIQAF-SMDELPLHRVDLIIN  184 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhh---cC------ceEEe-chhhhcccCccEEEE
Confidence            468999999999999999999998  8999999999887777653110   00      11222 2222 3457999999


Q ss_pred             cCcccc---HHHHHHhhhhcCCCCCeEEEeccCCCcch
Q 012720          206 AMPVQF---SSSFLEGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       206 aVp~~~---v~~vl~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      |+|...   ..++.- -...++++.+++++. ....+|
T Consensus       185 atp~gm~~~~~~~~~-~~~~l~~~~~v~D~~-y~p~~T  220 (270)
T TIGR00507       185 ATSAGMSGNIDEPPV-PAEKLKEGMVVYDMV-YNPGET  220 (270)
T ss_pred             CCCCCCCCCCCCCCC-CHHHcCCCCEEEEec-cCCCCC
Confidence            999632   221100 123467788999986 344443

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.70  E-value=0.00011  Score=77.13  Aligned_cols=95  Identities=22%  Similarity=0.313  Sum_probs=65.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||+|.||..++..|...|  . +|++++|+.++++.+.+...      .     .+....+..+++.++|+||.
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~G--~~~V~v~~r~~~ra~~la~~~g------~-----~~~~~~~~~~~l~~aDvVI~  248 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEKG--VRKITVANRTLERAEELAEEFG------G-----EAIPLDELPEALAEADIVIS  248 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHHHcC------C-----cEeeHHHHHHHhccCCEEEE
Confidence            479999999999999999999888  5 89999999988777765421      0     11122355667789999999


Q ss_pred             cCcccc---HHHHHHhhh-hcCCCCCeEEEecc
Q 012720          206 AMPVQF---SSSFLEGIS-DYVDPGLPFISLSK  234 (458)
Q Consensus       206 aVp~~~---v~~vl~~i~-~~l~~~~ivV~~sn  234 (458)
                      |+++..   ..+.++... ..-..+.++++++.
T Consensus       249 aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        249 STGAPHPIIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             CCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            998643   233333321 11123567888874

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.69  E-value=0.00018  Score=72.73  Aligned_cols=96  Identities=19%  Similarity=0.341  Sum_probs=72.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ...++|||+|.++..-...+..--.--+|.+|+|+++..+++.+.-..       .++..+.++++.++++++||+|+.|
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~~~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGGEAVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcCccceeccCHHHHhhcCCEEEEe
Confidence            467999999999999988887643236899999999988877653211       1122467888999999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|+..  .++.  ..++++|+.|..+.
T Consensus       203 T~s~~--Pil~--~~~l~~G~hI~aiG  225 (330)
T COG2423         203 TPSTE--PVLK--AEWLKPGTHINAIG  225 (330)
T ss_pred             cCCCC--Ceec--HhhcCCCcEEEecC
Confidence            99866  2221  35677898887665

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.67  E-value=0.00032  Score=70.86  Aligned_cols=102  Identities=15%  Similarity=0.087  Sum_probs=64.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVil  205 (458)
                      .+||+|||+|.+|..+|..|+..|.-.++.++|++++.++....+-.+...     +...+... ++.+ .+++||+||+
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----~~~~~~i~~~~~~-~~~~adivIi   79 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----FTSPTKIYAGDYS-DCKDADLVVI   79 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----ccCCeEEEeCCHH-HhCCCCEEEE
Confidence            479999999999999999999888323899999988765544332111110     10122333 4444 5899999999


Q ss_pred             cCccc-----c-----------HHHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQ-----F-----------SSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~-----~-----------v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +--..     .           ++++++.+.++- ++.+++..+|-
T Consensus        80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP  124 (315)
T PRK00066         80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNP  124 (315)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence            66431     1           334444455544 35667777763

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.67  E-value=8.7e-05  Score=73.36  Aligned_cols=71  Identities=20%  Similarity=0.264  Sum_probs=57.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||. |.||.+||..|.++|  +.|++|....                            .++++.+++||+||.
T Consensus       158 Gk~v~vIG~S~ivG~Pla~lL~~~g--atVtv~~s~t----------------------------~~l~~~~~~ADIVI~  207 (284)
T PRK14179        158 GKHAVVIGRSNIVGKPMAQLLLDKN--ATVTLTHSRT----------------------------RNLAEVARKADILVV  207 (284)
T ss_pred             CCEEEEECCCCcCcHHHHHHHHHCC--CEEEEECCCC----------------------------CCHHHHHhhCCEEEE
Confidence            679999999 999999999999999  9999982111                            156777899999999


Q ss_pred             cCcccc-HHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQF-SSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~-v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++... +..      .++++|++||+++
T Consensus       208 avg~~~~v~~------~~ik~GavVIDvg  230 (284)
T PRK14179        208 AIGRGHFVTK------EFVKEGAVVIDVG  230 (284)
T ss_pred             ecCccccCCH------HHccCCcEEEEec
Confidence            999643 443      2378899999985

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.67  E-value=0.00029  Score=71.12  Aligned_cols=95  Identities=15%  Similarity=0.197  Sum_probs=70.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+++|||+|..+..-+..+...-.-.+|.+|+|++++++++.+.-..        ....+.+.++.+++++++|+|+.|
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA--------LGFAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--------cCCcEEEECCHHHHhcCCCEEEEe
Confidence            578999999999999888887643236899999999998877653211        012356678999999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++..  .+++  ...+++|+.|..+.
T Consensus       200 T~s~~--P~~~--~~~l~~G~hi~~iG  222 (315)
T PRK06823        200 TPSRE--PLLQ--AEDIQPGTHITAVG  222 (315)
T ss_pred             cCCCC--ceeC--HHHcCCCcEEEecC
Confidence            99653  2221  24567898887664

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.65  E-value=0.00029  Score=70.62  Aligned_cols=96  Identities=11%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+++|||+|..|..-+..++.--.-.+|.+|+|++++++++.+.-..       .+...+.+.++++++++++|+|+.|
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~-------~~~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK-------EFGVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH-------hcCCcEEEeCCHHHHHhcCCEEEEe
Confidence            468999999999999888887642126899999999998887654211       0112366778999999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++..  .++.  ...+++|+.|..+.
T Consensus       190 T~s~~--P~~~--~~~l~pg~hV~aiG  212 (301)
T PRK06407        190 TNSDT--PIFN--RKYLGDEYHVNLAG  212 (301)
T ss_pred             cCCCC--cEec--HHHcCCCceEEecC
Confidence            99753  2221  23567887766553

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.65  E-value=0.00023  Score=72.69  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=68.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+++|||+|..+..-...+..--.-.+|.+|+|++++++++.+.-..        ....+.+.++++++++++|+|+.|
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~--------~~~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG--------PGLRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh--------cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            468999999999988776665432226899999999988877654211        012356678999999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++..-..++..  +.+++|+.|..+.
T Consensus       201 T~S~~~~Pvl~~--~~lkpG~hV~aIG  225 (346)
T PRK07589        201 TADKTNATILTD--DMVEPGMHINAVG  225 (346)
T ss_pred             cCCCCCCceecH--HHcCCCcEEEecC
Confidence            986442223322  4668898776554

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.65  E-value=0.0048  Score=63.18  Aligned_cols=234  Identities=14%  Similarity=0.131  Sum_probs=137.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-Cc-cCCCC------CCCCceE---EeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-CR-YFPEQ------KLPENVI---ATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~-~~-~~~~~------~l~~~i~---a~~~~~e  195 (458)
                      |.+|.|+|+|..+--+|..|.+.+ .+.|-+.+|...+.+++-+.-.. .. +....      .+...+.   +..+.++
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~   79 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEE   79 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHH
Confidence            457999999999999999999877 36799999987665554332111 00 00000      0111121   3457788


Q ss_pred             hcCCCCEEEEcCccccHHHHHHhhh-hcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE---EEECcccH---
Q 012720          196 ALLGADYCLHAMPVQFSSSFLEGIS-DYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI---ALSGPSFA---  268 (458)
Q Consensus       196 a~~~aDiVilaVp~~~v~~vl~~i~-~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~---vl~gP~~a---  268 (458)
                      ...+.|.+|+|||+++-.+|+++|. ..++.=..||.++.+++..  ..+...+.+. +.. ..+.   --.|....   
T Consensus        80 i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~--~lv~~~l~~~-~~~-~EVISFStY~gdTr~~d~  155 (429)
T PF10100_consen   80 IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSH--LLVKGFLNDL-GPD-AEVISFSTYYGDTRWSDG  155 (429)
T ss_pred             hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchH--HHHHHHHHhc-CCC-ceEEEeecccccceeccC
Confidence            8889999999999999999999874 3444445677788777753  2334444433 321 1111   11121111   


Q ss_pred             ---HH-HhccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHH--------HHHHHHHHHHHHH--hcc
Q 012720          269 ---LE-LMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAG--------ALKNVLAIAAGIV--VGM  332 (458)
Q Consensus       269 ---~e-i~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~k--------alkNi~ai~~G~~--~~~  332 (458)
                         .. +..+....+.+++  .+.....++..+|+..|+.+...++...+|-..        ++.|-+++..-..  ..-
T Consensus       156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~  235 (429)
T PF10100_consen  156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP  235 (429)
T ss_pred             CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence               01 1111112234443  345678999999999999999988887777432        2233333221110  011


Q ss_pred             ----cC---C--CcHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 012720          333 ----NL---G--NNSMAALVAQGCSEIRWLATKMGAKPATIT  365 (458)
Q Consensus       333 ----kl---~--~n~~~al~~~~l~E~~~la~a~Gi~~~~~~  365 (458)
                          |+   |  ......-+...-.|+..+-+++|+++=.++
T Consensus       236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLL  277 (429)
T PF10100_consen  236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLL  277 (429)
T ss_pred             ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHH
Confidence                11   1  223445566777899999999998754433

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.63  E-value=0.00031  Score=73.62  Aligned_cols=96  Identities=18%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..++..|...|. .+|++++|+.++++.+.+...      .     ......+..+++.++|+||.|
T Consensus       180 ~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g------~-----~~i~~~~l~~~l~~aDvVi~a  247 (417)
T TIGR01035       180 GKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG------G-----EAVKFEDLEEYLAEADIVISS  247 (417)
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC------C-----eEeeHHHHHHHHhhCCEEEEC
Confidence            4689999999999999999998873 689999999988776665310      0     011123566778899999999


Q ss_pred             Ccccc---HHHHHHhhhhcCCCCCeEEEecc
Q 012720          207 MPVQF---SSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~---v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +++..   ..+.++.....-+...+++++..
T Consensus       248 T~s~~~ii~~e~l~~~~~~~~~~~~viDla~  278 (417)
T TIGR01035       248 TGAPHPIVSKEDVERALRERTRPLFIIDIAV  278 (417)
T ss_pred             CCCCCceEcHHHHHHHHhcCCCCeEEEEeCC
Confidence            98643   22333332211112347888873

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02494 adenosylhomocysteinase

Probab=97.62  E-value=0.00027  Score=74.27  Aligned_cols=93  Identities=12%  Similarity=0.069  Sum_probs=68.4

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .+...++|+|+|+|.+|..+|.++...|  .+|+++++++.+.......|.              ... +.+++++.+|+
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~G~--------------~vv-~leEal~~ADV  312 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALMEGY--------------QVL-TLEDVVSEADI  312 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhcCC--------------eec-cHHHHHhhCCE
Confidence            3334579999999999999999998777  899999999865444333332              111 56778889999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ||.++....+-  ..+....++++.+++++..
T Consensus       313 VI~tTGt~~vI--~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        313 FVTTTGNKDII--MVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             EEECCCCccch--HHHHHhcCCCCCEEEEcCC
Confidence            99977654321  1445667889999998875

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.62  E-value=0.00028  Score=71.04  Aligned_cols=107  Identities=14%  Similarity=0.308  Sum_probs=64.3

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCcc-CCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~-~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|||+ |.+|..++..|+..|...+|+++||++ ..+.+......... +........+..+++.++ ++++|+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~-~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK-SLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc-cccccccccchhhhchhccCCCcEEEECCCHHH-hCCCCEEEE
Confidence            69999998 999999999999988333699999954 22222211110000 000001113455556554 899999999


Q ss_pred             cCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+...                .++++.+.|.+.. ++.++|..+|.++
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd  125 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVD  125 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchH
Confidence            98631                1344445555555 4556666776554

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.61  E-value=0.00028  Score=71.58  Aligned_cols=94  Identities=20%  Similarity=0.353  Sum_probs=66.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..+++|||+|.+|...+..|.. .+. .+|++|+|+.++++++.+.-.. .      +...+...+++++++.++|+|+.
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i-~~v~V~~R~~~~a~~~a~~~~~-~------~g~~v~~~~~~~~av~~aDiVvt  200 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDI-RSARIWARDSAKAEALALQLSS-L------LGIDVTAATDPRAAMSGADIIVT  200 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCc-cEEEEECCCHHHHHHHHHHHHh-h------cCceEEEeCCHHHHhccCCEEEE
Confidence            4689999999999999999974 442 5799999999998887654210 0      01124556788888999999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |+|+..  .++.  ...+++++.|..+
T Consensus       201 aT~s~~--p~i~--~~~l~~g~~i~~v  223 (326)
T TIGR02992       201 TTPSET--PILH--AEWLEPGQHVTAM  223 (326)
T ss_pred             ecCCCC--cEec--HHHcCCCcEEEee
Confidence            999743  1221  2346678776543

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.60  E-value=0.00016  Score=72.96  Aligned_cols=97  Identities=20%  Similarity=0.324  Sum_probs=61.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+++|||+|..|..-+..+...-.-.+|.+|+|++++++++.+.-..        +...+...+|+++++++||+|+.|
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~--------~~~~v~~~~~~~~av~~aDii~ta  199 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD--------LGVPVVAVDSAEEAVRGADIIVTA  199 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC--------CCTCEEEESSHHHHHTTSSEEEE-
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc--------ccccceeccchhhhcccCCEEEEc
Confidence            358999999999999888887643236899999999988888764321        112467788999999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++.....++.  ...+++|+.|..+.
T Consensus       200 T~s~~~~P~~~--~~~l~~g~hi~~iG  224 (313)
T PF02423_consen  200 TPSTTPAPVFD--AEWLKPGTHINAIG  224 (313)
T ss_dssp             ---SSEEESB---GGGS-TT-EEEE-S
T ss_pred             cCCCCCCcccc--HHHcCCCcEEEEec
Confidence            99754211221  35678898887665

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PLN02602 lactate dehydrogenase

Probab=97.59  E-value=0.00044  Score=70.73  Aligned_cols=104  Identities=18%  Similarity=0.308  Sum_probs=66.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      +||+|||+|.+|+.+|..|+..+...++.++|+++++++....+-.+...+..   ...+....+.++ +++||+||++-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~---~~~i~~~~dy~~-~~daDiVVitA  113 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLP---RTKILASTDYAV-TAGSDLCIVTA  113 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCC---CCEEEeCCCHHH-hCCCCEEEECC
Confidence            69999999999999999999887545799999988655433221111110100   123444456666 79999999985


Q ss_pred             ccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          208 PVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       208 p~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      -..                -+.++.+.|.++ .++.+++..+|-.
T Consensus       114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv  157 (350)
T PLN02602        114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV  157 (350)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence            321                123344455554 3566777788744

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.57  E-value=0.00046  Score=71.94  Aligned_cols=89  Identities=13%  Similarity=0.130  Sum_probs=68.6

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..++|+|+|+|.+|..++..+...|  .+|+++++++.+.+.....|.              ... +.+++++++|+||.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~G~--------------~~~-~~~e~v~~aDVVI~  263 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAMEGY--------------EVM-TMEEAVKEGDIFVT  263 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhcCC--------------EEc-cHHHHHcCCCEEEE
Confidence            3579999999999999999999888  899999999887766665542              111 34567889999999


Q ss_pred             cCccccHHHHHH-hhhhcCCCCCeEEEecc
Q 012720          206 AMPVQFSSSFLE-GISDYVDPGLPFISLSK  234 (458)
Q Consensus       206 aVp~~~v~~vl~-~i~~~l~~~~ivV~~sn  234 (458)
                      |+....   ++. .....++++.+++++..
T Consensus       264 atG~~~---~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         264 TTGNKD---IITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             CCCCHH---HHHHHHHhcCCCCcEEEEeCC
Confidence            986543   343 34677888998888764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.57  E-value=0.00038  Score=72.08  Aligned_cols=95  Identities=21%  Similarity=0.313  Sum_probs=68.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+|+.|||+|-||...|..|+++|. .+|++.+|+.++++.+.+.-. .          .+...+++.+.+.++|+||.|
T Consensus       178 ~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~-~----------~~~~l~el~~~l~~~DvViss  245 (414)
T COG0373         178 DKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG-A----------EAVALEELLEALAEADVVISS  245 (414)
T ss_pred             cCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC-C----------eeecHHHHHHhhhhCCEEEEe
Confidence            4689999999999999999999985 789999999999998877521 1          122334666778999999999


Q ss_pred             Ccccc---HHHHHHhhhhcCCCCCeEEEecc
Q 012720          207 MPVQF---SSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~---v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +.+..   ..+.++..... ++..++|++.+
T Consensus       246 Tsa~~~ii~~~~ve~a~~~-r~~~livDiav  275 (414)
T COG0373         246 TSAPHPIITREMVERALKI-RKRLLIVDIAV  275 (414)
T ss_pred             cCCCccccCHHHHHHHHhc-ccCeEEEEecC
Confidence            87542   23333333221 12246788774

>PRK05442 malate dehydrogenase; Provisional

Probab=97.57  E-value=0.00024  Score=71.95  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~-----~V~v~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      |..++||+|||+ |.+|+.+|..|...+.--     ++.++|+++.  +++...-.   ..+.. ..+..++..+.+..+
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D---l~~~~-~~~~~~~~i~~~~y~   76 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME---LDDCA-FPLLAGVVITDDPNV   76 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh---hhhhh-hhhcCCcEEecChHH
Confidence            456789999998 999999999998766312     7999998542  22211110   00000 001112344445446


Q ss_pred             hcCCCCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          196 ALLGADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       196 a~~~aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+++||+||++--..                -++++.++|.++.+++.+++..+|-++
T Consensus        77 ~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD  134 (326)
T PRK05442         77 AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN  134 (326)
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence            689999999865421                144455566666656778888887443

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.57  E-value=0.00018  Score=62.10  Aligned_cols=97  Identities=18%  Similarity=0.279  Sum_probs=62.1

Q ss_pred             eEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCCEEEE
Q 012720          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADYCLH  205 (458)
Q Consensus       129 kI~IIG-aG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDiVil  205 (458)
                      ||+||| .|.+|..+...|.++- ..++. ++++++..-..+.....   ...+   ...+.+.+ +.++ +.++|+||+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp-~~e~~~~~~~~~~~g~~~~~~~~---~~~~---~~~~~~~~~~~~~-~~~~Dvvf~   72 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHP-DFELVALVSSSRSAGKPLSEVFP---HPKG---FEDLSVEDADPEE-LSDVDVVFL   72 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTS-TEEEEEEEESTTTTTSBHHHTTG---GGTT---TEEEBEEETSGHH-HTTESEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCC-CccEEEeeeeccccCCeeehhcc---cccc---ccceeEeecchhH-hhcCCEEEe
Confidence            799999 8999999999999864 35655 45666522222222110   0000   01222322 4444 589999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |+|.....++...+.   ++|..||+++.-.
T Consensus        73 a~~~~~~~~~~~~~~---~~g~~ViD~s~~~  100 (121)
T PF01118_consen   73 ALPHGASKELAPKLL---KAGIKVIDLSGDF  100 (121)
T ss_dssp             -SCHHHHHHHHHHHH---HTTSEEEESSSTT
T ss_pred             cCchhHHHHHHHHHh---hCCcEEEeCCHHH
Confidence            999988888777763   4688999998543

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.56  E-value=0.00019  Score=67.68  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~  161 (458)
                      ..||+|+|+|.||+.+|..|+++|  . +++++|++
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~G--vg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAG--IGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcC--CCEEEEECCC
Confidence            468999999999999999999999  5 69999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.55  E-value=0.0013  Score=67.12  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH-hhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~-ea~~~aDiVi  204 (458)
                      |+||+|||+ |.+|..++..|.++. ++++..+.++.+..+.+.+....   +.+.   ....+ .+.+ ....++|+|+
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p-~~elv~v~~~~~~g~~l~~~~~~---~~~~---~~~~~-~~~~~~~~~~vD~Vf   73 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHP-EVEIVAVTSRSSAGKPLSDVHPH---LRGL---VDLVL-EPLDPEILAGADVVF   73 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCC-CceEEEEECccccCcchHHhCcc---cccc---cCcee-ecCCHHHhcCCCEEE
Confidence            579999997 999999999999763 26776554433322233321100   0000   00111 1222 1356899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|+|.....++...+.+   .|..||+++..+-.
T Consensus        74 ~alP~~~~~~~v~~a~~---aG~~VID~S~~fR~  104 (343)
T PRK00436         74 LALPHGVSMDLAPQLLE---AGVKVIDLSADFRL  104 (343)
T ss_pred             ECCCcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence            99999888887776644   58899999965543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.54  E-value=0.00034  Score=73.76  Aligned_cols=94  Identities=12%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil  205 (458)
                      |||.|+|+|.+|..+|..|.+.|  ++|++++++++.++.+++ .+.... .++.      .-...++++ +.++|.||+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~~~~~~~~-~gd~------~~~~~l~~~~~~~a~~vi~   71 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQDRLDVRTV-VGNG------SSPDVLREAGAEDADLLIA   71 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhhcCEEEE-EeCC------CCHHHHHHcCCCcCCEEEE
Confidence            68999999999999999999988  999999999998888765 222111 1110      001123344 678999999


Q ss_pred             cCccccHHHHHHhhhhcC-CCCCeEE
Q 012720          206 AMPVQFSSSFLEGISDYV-DPGLPFI  230 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l-~~~~ivV  230 (458)
                      +++.......+......+ +...+|+
T Consensus        72 ~~~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         72 VTDSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             ecCChHHHHHHHHHHHHhcCCCeEEE
Confidence            999866554443333333 4334444

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.54  E-value=0.00093  Score=65.27  Aligned_cols=93  Identities=17%  Similarity=0.204  Sum_probs=66.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiV  203 (458)
                      .+||+|||+|+||..++..|...+. ++++. +++|+.++.+.+...               +.+.+|+++. ...+|+|
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~---------------~~~~~~l~~ll~~~~DlV   66 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR---------------VALLDGLPGLLAWRPDLV   66 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc---------------CcccCCHHHHhhcCCCEE
Confidence            4799999999999999999976431 24444 567777666666432               2355688885 5789999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +-|-....+++....++.   .|.-++.+|-|--
T Consensus        67 VE~A~~~av~e~~~~iL~---~g~dlvv~SvGAL   97 (267)
T PRK13301         67 VEAAGQQAIAEHAEGCLT---AGLDMIICSAGAL   97 (267)
T ss_pred             EECCCHHHHHHHHHHHHh---cCCCEEEEChhHh
Confidence            999999999888877655   3555555554543

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.53  E-value=0.00023  Score=71.69  Aligned_cols=88  Identities=14%  Similarity=0.195  Sum_probs=56.5

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +++||+|||+|+||...+..+.++. +.++. +|+|++..  .+.+ ..            ++..+.+.++.+.++|+|+
T Consensus         2 ~kIRVgIVG~GnIGr~~a~al~~~p-d~ELVgV~dr~~~~--~~~~-~~------------~v~~~~d~~e~l~~iDVVi   65 (324)
T TIGR01921         2 SKIRAAIVGYGNLGRSVEKAIQQQP-DMELVGVFSRRGAE--TLDT-ET------------PVYAVADDEKHLDDVDVLI   65 (324)
T ss_pred             CCcEEEEEeecHHHHHHHHHHHhCC-CcEEEEEEcCCcHH--HHhh-cC------------CccccCCHHHhccCCCEEE
Confidence            3579999999999999999998763 27776 57888521  2221 11            1223346666678899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +|+|+....+....   .+..|..+|+.
T Consensus        66 IctPs~th~~~~~~---~L~aG~NVV~s   90 (324)
T TIGR01921        66 LCMGSATDIPEQAP---YFAQFANTVDS   90 (324)
T ss_pred             EcCCCccCHHHHHH---HHHcCCCEEEC
Confidence            99997554333322   23345555554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.52  E-value=0.00039  Score=70.61  Aligned_cols=94  Identities=20%  Similarity=0.317  Sum_probs=65.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.+|.+.+..|.....-.+|.+|+|++++++++.+.... .      +...+...+++++++.++|+|+.|
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-~------~g~~v~~~~d~~~al~~aDiVi~a  204 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-E------LGIPVTVARDVHEAVAGADIIVTT  204 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-c------cCceEEEeCCHHHHHccCCEEEEe
Confidence            468999999999999888887532126899999999998888764211 0      011245567888989999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEE
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFIS  231 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~  231 (458)
                      +|+..  .++..  ..+++++.|..
T Consensus       205 T~s~~--p~i~~--~~l~~g~~v~~  225 (330)
T PRK08291        205 TPSEE--PILKA--EWLHPGLHVTA  225 (330)
T ss_pred             eCCCC--cEecH--HHcCCCceEEe
Confidence            99743  12211  23456665543

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.52  E-value=0.00029  Score=72.71  Aligned_cols=98  Identities=15%  Similarity=0.223  Sum_probs=66.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+|.|||+|.+|...+..+...|  .+|+++||++++++.+........+.       ...-..++.+.++++|+||.|
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~~v~~-------~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGGRIHT-------RYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCceeEe-------ccCCHHHHHHHHccCCEEEEc
Confidence            357999999999999999999988  89999999998877776532110000       000012345667899999999


Q ss_pred             Ccc--ccHHHHH-HhhhhcCCCCCeEEEec
Q 012720          207 MPV--QFSSSFL-EGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~--~~v~~vl-~~i~~~l~~~~ivV~~s  233 (458)
                      ++.  .....++ ++....++++.+||+++
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            843  1111111 33445578889998876

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.50  E-value=0.00061  Score=68.57  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=64.0

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe---CCHHhhcCCCCEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~---~~~~ea~~~aDiV  203 (458)
                      |||+|||+ |.+|+.+|..|+..+...++.++|++  .++     |.-.. +.....+..++.+   +|+.+.++++|+|
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~-----g~alD-L~~~~~~~~i~~~~~~~~~y~~~~daDiv   72 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP-----GVAAD-LSHINTPAKVTGYLGPEELKKALKGADVV   72 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc-----eeehH-hHhCCCcceEEEecCCCchHHhcCCCCEE
Confidence            69999999 99999999999988744589999987  211     11000 0000012235542   2334568999999


Q ss_pred             EEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       204 ilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++.-..                -+.++.+.|.++ .++.+++..+|-.+
T Consensus        73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPvD  121 (310)
T cd01337          73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPVN  121 (310)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchh
Confidence            9976431                133444455555 46778888898554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06046 alanine dehydrogenase; Validated

Probab=97.50  E-value=0.00037  Score=70.69  Aligned_cols=95  Identities=13%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+|+|||+|.+|...+..|.....-..|.+|+|++++.+++.+.-..       .++..+...++.+++++ +|+|++|
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSS-------VVGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHh-------hcCceEEEeCCHHHHhh-CCEEEEe
Confidence            468999999999999999887543125788999999988877654210       01123456678888886 9999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|+..  .++.  ...+++|+.|..+.
T Consensus       201 Tps~~--P~~~--~~~l~~g~hV~~iG  223 (326)
T PRK06046        201 TPSRK--PVVK--AEWIKEGTHINAIG  223 (326)
T ss_pred             cCCCC--cEec--HHHcCCCCEEEecC
Confidence            99743  2221  23567888876554

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.49  E-value=0.0003  Score=64.47  Aligned_cols=73  Identities=26%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             CCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~m-G~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+||.|||+|.| |..+|..|.+.|  .+|++.+|+.+                            ++.+.+.++|+||.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g--~~V~v~~r~~~----------------------------~l~~~l~~aDiVIs   93 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRN--ATVTVCHSKTK----------------------------NLKEHTKQADIVIV   93 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCC--CEEEEEECCch----------------------------hHHHHHhhCCEEEE
Confidence            579999999997 888999999998  78999998742                            34456789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |+++..+   +.  ...++++.++|++..
T Consensus        94 at~~~~i---i~--~~~~~~~~viIDla~  117 (168)
T cd01080          94 AVGKPGL---VK--GDMVKPGAVVIDVGI  117 (168)
T ss_pred             cCCCCce---ec--HHHccCCeEEEEccC
Confidence            9997542   21  123566788888874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK04148 hypothetical protein; Provisional

Probab=97.44  E-value=0.00068  Score=59.62  Aligned_cols=96  Identities=16%  Similarity=0.162  Sum_probs=71.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||.+||+| .|..+|..|++.|  ++|+..|.+++.++.+++.+.+.. ..+.       +..++ +.-+++|+|.-+
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~~~~v-~dDl-------f~p~~-~~y~~a~liysi   84 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLGLNAF-VDDL-------FNPNL-EIYKNAKLIYSI   84 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhCCeEE-ECcC-------CCCCH-HHHhcCCEEEEe
Confidence            4789999999 9999999999999  999999999998888877654311 0110       11122 446799999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      =|...+..-+.+++..+..+-+|..+++
T Consensus        85 rpp~el~~~~~~la~~~~~~~~i~~l~~  112 (134)
T PRK04148         85 RPPRDLQPFILELAKKINVPLIIKPLSG  112 (134)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            9987777777777777776666666663

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.43  E-value=0.0022  Score=60.65  Aligned_cols=80  Identities=13%  Similarity=0.133  Sum_probs=54.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|.|||+|.+|...+..|.++|  ++|++++++. +.+..+...+. ..+.         .-.-.. +.+.++|+||.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~~~~~~l~~l~~~~~-i~~~---------~~~~~~-~~l~~adlVia   76 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYG--AHIVVISPELTENLVKLVEEGK-IRWK---------QKEFEP-SDIVDAFLVIA   76 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCHHHHHHHhCCC-EEEE---------ecCCCh-hhcCCceEEEE
Confidence            579999999999999999999999  9999998764 22334433221 0000         000012 23678999999


Q ss_pred             cCccccHHHHHHhh
Q 012720          206 AMPVQFSSSFLEGI  219 (458)
Q Consensus       206 aVp~~~v~~vl~~i  219 (458)
                      |+.+..+...+...
T Consensus        77 aT~d~elN~~i~~~   90 (202)
T PRK06718         77 ATNDPRVNEQVKED   90 (202)
T ss_pred             cCCCHHHHHHHHHH
Confidence            99987766655443

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.42  E-value=0.00056  Score=63.89  Aligned_cols=96  Identities=27%  Similarity=0.331  Sum_probs=63.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--CC---HHhhcCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--TD---AKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~--~~---~~ea~~~a  200 (458)
                      .+++.|+|+ |.+|..++..|++.|  ++|++++|+.++++.+.+.- ...+  +    ..+...  .+   ..+++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g--~~V~l~~R~~~~~~~l~~~l-~~~~--~----~~~~~~~~~~~~~~~~~~~~~   98 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREG--ARVVLVGRDLERAQKAADSL-RARF--G----EGVGAVETSDDAARAAAIKGA   98 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHH-Hhhc--C----CcEEEeeCCCHHHHHHHHhcC
Confidence            478999996 999999999999998  89999999998877765431 0000  0    011111  12   23567899


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+||.+++....  .........+++.+++++.
T Consensus        99 diVi~at~~g~~--~~~~~~~~~~~~~vv~D~~  129 (194)
T cd01078          99 DVVFAAGAAGVE--LLEKLAWAPKPLAVAADVN  129 (194)
T ss_pred             CEEEECCCCCce--echhhhcccCceeEEEEcc
Confidence            999999996542  1111222334467788875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.42  E-value=0.0012  Score=65.80  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTAL---  197 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~--e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---  197 (458)
                      ||+++||+|||+|.+|..+...+.+.. +.++. +++++++..  +..++.|..             ...++.++.+   
T Consensus         1 ~m~klrVAIIGtG~IGt~hm~~l~~~~-~velvAVvdid~es~gla~A~~~Gi~-------------~~~~~ie~LL~~~   66 (302)
T PRK08300          1 MMSKLKVAIIGSGNIGTDLMIKILRSE-HLEPGAMVGIDPESDGLARARRLGVA-------------TSAEGIDGLLAMP   66 (302)
T ss_pred             CCCCCeEEEEcCcHHHHHHHHHHhcCC-CcEEEEEEeCChhhHHHHHHHHcCCC-------------cccCCHHHHHhCc
Confidence            456789999999999999888887643 26665 678887532  222333321             1124566655   


Q ss_pred             --CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          198 --LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       198 --~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                        .+.|+||++++.....+....+.+   .|..+|+.+
T Consensus        67 ~~~dIDiVf~AT~a~~H~e~a~~a~e---aGk~VID~s  101 (302)
T PRK08300         67 EFDDIDIVFDATSAGAHVRHAAKLRE---AGIRAIDLT  101 (302)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHH---cCCeEEECC
Confidence              468999999998877776655543   577888776

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.41  E-value=0.00073  Score=68.32  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=63.1

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEEeCCH---HhhcCC
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIATTDA---KTALLG  199 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea~~~  199 (458)
                      +|.||+|||+ |.+|+.+|..|+..+...++.++|++....+  .+...  .        ....+...++.   .+++++
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~--~--------~~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHI--D--------TPAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhc--C--------cCceEEEecCCCchHHHhCC
Confidence            4679999999 9999999999996664468999999422111  11110  0        01124433332   467899


Q ss_pred             CCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          200 ADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       200 aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|+||++.-..                .+.++++.+.++ .++.+|+..+|+++.
T Consensus        77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPvdv  130 (321)
T PTZ00325         77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPVNS  130 (321)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcHHH
Confidence            99999876531                122233334343 456678888887664

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.40  E-value=0.0013  Score=75.44  Aligned_cols=86  Identities=16%  Similarity=0.207  Sum_probs=60.4

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCe-------------EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLK-------------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-  189 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~-------------V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-  189 (458)
                      ..+++||+|||+|.||...+..|++.. +.+             |++.|++.+.++++.+...+..         .+.. 
T Consensus       566 ~~~~~rIlVLGAG~VG~~~a~~La~~~-~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~---------~v~lD  635 (1042)
T PLN02819        566 TKKSQNVLILGAGRVCRPAAEYLASVK-TISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE---------AVQLD  635 (1042)
T ss_pred             cccCCcEEEECCCHHHHHHHHHHHhCc-CccccccccccccccEEEEECCCHHHHHHHHHhcCCCc---------eEEee
Confidence            334679999999999999999999764 233             8899999988887766321100         1223 


Q ss_pred             eCCHHhh---cCCCCEEEEcCccccHHHHHHhh
Q 012720          190 TTDAKTA---LLGADYCLHAMPVQFSSSFLEGI  219 (458)
Q Consensus       190 ~~~~~ea---~~~aDiVilaVp~~~v~~vl~~i  219 (458)
                      ..|.+++   ++++|+||.|+|......++...
T Consensus       636 v~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaA  668 (1042)
T PLN02819        636 VSDSESLLKYVSQVDVVISLLPASCHAVVAKAC  668 (1042)
T ss_pred             cCCHHHHHHhhcCCCEEEECCCchhhHHHHHHH
Confidence            3455443   46899999999987666655443

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.40  E-value=0.0012  Score=66.50  Aligned_cols=103  Identities=15%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCCEEEEcC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHAM  207 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVilaV  207 (458)
                      ||+|||+|.+|+.+|..|+..+.--++.++|.++++++.....-.+...+   ....+++. ..+.+ .+++||+||++.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~---~~~~~~~i~~~~y~-~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATAL---TYSTNTKIRAGDYD-DCADADIIVITA   76 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhcc---CCCCCEEEEECCHH-HhCCCCEEEECC
Confidence            79999999999999999998874347999999876544322211010000   00112232 34554 589999999976


Q ss_pred             cc----ccH--------------HHHHHhhhhcCCCCCeEEEeccCC
Q 012720          208 PV----QFS--------------SSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       208 p~----~~v--------------~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      -.    ...              +++.+.+.++- ++.+++..+|-+
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNPv  122 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNPL  122 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCcH
Confidence            43    112              22233344444 566777788754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.37  E-value=0.00056  Score=71.57  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=57.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||.|||+|.||..++..|+..|. .++++++|+.++++.+.+.....          .+...++..+.+.++|+||.|
T Consensus       181 ~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~~----------~~~~~~~l~~~l~~aDiVI~a  249 (414)
T PRK13940        181 SKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRNA----------SAHYLSELPQLIKKADIIIAA  249 (414)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcCC----------eEecHHHHHHHhccCCEEEEC
Confidence            4689999999999999999999883 47999999999888887642100          122234556778899999999


Q ss_pred             Cccc
Q 012720          207 MPVQ  210 (458)
Q Consensus       207 Vp~~  210 (458)
                      +++.
T Consensus       250 T~a~  253 (414)
T PRK13940        250 VNVL  253 (414)
T ss_pred             cCCC
Confidence            9974

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.36  E-value=0.0021  Score=65.80  Aligned_cols=99  Identities=18%  Similarity=0.284  Sum_probs=63.0

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVi  204 (458)
                      |||+|||+ |.+|..+.+.|.++- .+++. ++++++..-+.+.+....   +.+.   ...... .+.++...++|+||
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP-~~el~~l~~s~~sagk~~~~~~~~---l~~~---~~~~~~~~~~~~~~~~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHP-EVEITYLVSSRESAGKPVSEVHPH---LRGL---VDLNLEPIDEEEIAEDADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCC-CceEEEEeccchhcCCChHHhCcc---cccc---CCceeecCCHHHhhcCCCEEE
Confidence            58999998 999999999999763 26777 546544222222221100   0010   011111 14455556899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|+|.....+++..+.+   .|..||+++.-+
T Consensus        74 ~alP~~~s~~~~~~~~~---~G~~VIDlS~~f  102 (346)
T TIGR01850        74 LALPHGVSAELAPELLA---AGVKVIDLSADF  102 (346)
T ss_pred             ECCCchHHHHHHHHHHh---CCCEEEeCChhh
Confidence            99999888777776644   578999998544

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.35  E-value=0.0007  Score=67.37  Aligned_cols=98  Identities=26%  Similarity=0.412  Sum_probs=64.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.-.. .+ +.    ..+....+..+.+.++|+||-|
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~-~~-~~----~~~~~~~~~~~~~~~aDiVIna  199 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNA-RF-PA----ARATAGSDLAAALAAADGLVHA  199 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHh-hC-CC----eEEEeccchHhhhCCCCEEEEC
Confidence            4689999999999999999999983 3799999999988888653110 00 00    0122223445557889999999


Q ss_pred             Ccccc--HHHHHHhh-hhcCCCCCeEEEec
Q 012720          207 MPVQF--SSSFLEGI-SDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~--v~~vl~~i-~~~l~~~~ivV~~s  233 (458)
                      +|..-  ....  .+ ...++++.+++++.
T Consensus       200 Tp~Gm~~~~~~--~~~~~~l~~~~~v~Div  227 (284)
T PRK12549        200 TPTGMAKHPGL--PLPAELLRPGLWVADIV  227 (284)
T ss_pred             CcCCCCCCCCC--CCCHHHcCCCcEEEEee
Confidence            98531  1100  01 12355666777765

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.35  E-value=0.0021  Score=65.63  Aligned_cols=102  Identities=21%  Similarity=0.216  Sum_probs=65.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhh-cCCCccC--CCCC--C-CCceEEeCCHHhhcCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEK-HCNCRYF--PEQK--L-PENVIATTDAKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~-g~~~~~~--~~~~--l-~~~i~a~~~~~ea~~~  199 (458)
                      |+||+|+|+|.||..++..+.+.. +.+|.. .+++++..+.+.+. |.. .|.  +...  + ..++.+..+.++...+
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~-d~eLvav~d~~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~~~el~~~   78 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQP-DMELVGVAKTKPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGTIEDLLEK   78 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCC-CcEEEEEECCChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCChhHhhcc
Confidence            479999999999999999888653 377764 56665544444332 221 110  0000  1 1245666677777788


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|+||.|++.....+.......   .|..+|+.+
T Consensus        79 vDVVIdaT~~~~~~e~a~~~~~---aGk~VI~~~  109 (341)
T PRK04207         79 ADIVVDATPGGVGAKNKELYEK---AGVKAIFQG  109 (341)
T ss_pred             CCEEEECCCchhhHHHHHHHHH---CCCEEEEcC
Confidence            9999999998877666654433   466666544

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.33  E-value=0.00088  Score=67.83  Aligned_cols=106  Identities=15%  Similarity=0.160  Sum_probs=64.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~-----~V~v~~r~~~~--~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      .+||+|||+ |.+|..+|..|+..|.--     ++.++|+.+..  ++...-   ...+... .+..++.+..+..+.++
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~---Dl~~~~~-~~~~~~~i~~~~~~~~~   77 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAM---ELEDCAF-PLLAEIVITDDPNVAFK   77 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeeh---hhhhccc-cccCceEEecCcHHHhC
Confidence            469999999 999999999999877322     79999985432  221111   0000000 01112344444445689


Q ss_pred             CCCEEEEcCccc-----c-----------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          199 GADYCLHAMPVQ-----F-----------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       199 ~aDiVilaVp~~-----~-----------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +||+||++--..     .           ++++...|.++-+++.++|.++|-+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv  131 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC  131 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence            999999976431     1           3444555666664567777778744

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.30  E-value=0.00096  Score=66.81  Aligned_cols=104  Identities=17%  Similarity=0.252  Sum_probs=63.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiVil  205 (458)
                      +||+|||+|.+|+++|..|...+...++.++|+.++..+-...   ...+-.. ......++..  +.+ .++++|+|++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~---DL~~~~~-~~~~~~~i~~~~~y~-~~~~aDiVvi   75 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL---DLSHAAA-PLGSDVKITGDGDYE-DLKGADIVVI   75 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc---chhhcch-hccCceEEecCCChh-hhcCCCEEEE
Confidence            6899999999999999999887765699999998543321111   1000000 0111233333  344 4899999999


Q ss_pred             cC--cc---c-----------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AM--PV---Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aV--p~---~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +-  |-   .           -++++.+++.++.+ +.+++..+|-++
T Consensus        76 tAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD  122 (313)
T COG0039          76 TAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVD  122 (313)
T ss_pred             eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHH
Confidence            87  31   1           13344445555544 667777887553

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.30  E-value=0.00098  Score=67.33  Aligned_cols=97  Identities=22%  Similarity=0.248  Sum_probs=67.0

Q ss_pred             CCCeEEEECcchHH-HHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CC
Q 012720          126 RTNKVVVLGGGSFG-TAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG-~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD  201 (458)
                      +++||+|||+|.++ ...+..+.+.+.. .-|.++++++++++++.+....         +   ..++|.++++++  .|
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~---------~---~~~~~~~~ll~~~~iD   69 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI---------A---KAYTDLEELLADPDID   69 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC---------C---cccCCHHHHhcCCCCC
Confidence            46899999998555 5688888776511 2356789999998888765311         0   356788888764  69


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|++|+|.....++...   .+..|..|+ |-|-+..
T Consensus        70 ~V~Iatp~~~H~e~~~~---AL~aGkhVl-~EKPla~  102 (342)
T COG0673          70 AVYIATPNALHAELALA---ALEAGKHVL-CEKPLAL  102 (342)
T ss_pred             EEEEcCCChhhHHHHHH---HHhcCCEEE-EcCCCCC
Confidence            99999998877776633   233465554 6666654

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.26  E-value=0.0025  Score=57.73  Aligned_cols=78  Identities=14%  Similarity=0.207  Sum_probs=52.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|.|||+|.+|..-+..|.+.|  ++|++++.+  ..+.+.+.+ ...      ..  .+.. ..++ +.++|+||.+
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp~--~~~~l~~l~-~i~------~~--~~~~-~~~d-l~~a~lViaa   77 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSPE--ICKEMKELP-YIT------WK--QKTF-SNDD-IKDAHLIYAA   77 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCc--cCHHHHhcc-CcE------EE--eccc-Chhc-CCCceEEEEC
Confidence            579999999999999999999999  999999643  344444321 000      00  0011 2223 6789999999


Q ss_pred             CccccHHHHHHhh
Q 012720          207 MPVQFSSSFLEGI  219 (458)
Q Consensus       207 Vp~~~v~~vl~~i  219 (458)
                      +....+...+...
T Consensus        78 T~d~e~N~~i~~~   90 (157)
T PRK06719         78 TNQHAVNMMVKQA   90 (157)
T ss_pred             CCCHHHHHHHHHH
Confidence            9887766555443

>PRK11579 putative oxidoreductase; Provisional

Probab=97.26  E-value=0.0021  Score=65.62  Aligned_cols=95  Identities=14%  Similarity=0.214  Sum_probs=62.2

Q ss_pred             hcCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012720          124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G  199 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~  199 (458)
                      |+.++||+|||+|.||.. .+..+.+.. +.++. +++++++++.   +..      +      .+.+++|.+++++  +
T Consensus         1 m~~~irvgiiG~G~i~~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------~------~~~~~~~~~ell~~~~   64 (346)
T PRK11579          1 MSDKIRVGLIGYGYASKTFHAPLIAGTP-GLELAAVSSSDATKVK---ADW------P------TVTVVSEPQHLFNDPN   64 (346)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhhCC-CCEEEEEECCCHHHHH---hhC------C------CCceeCCHHHHhcCCC
Confidence            344579999999999984 455555542 26766 6788876542   110      0      1345678988875  5


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      .|+|++|+|.....+++.....   .|..|+ +-|-+..
T Consensus        65 vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~   99 (346)
T PRK11579         65 IDLIVIPTPNDTHFPLAKAALE---AGKHVV-VDKPFTV   99 (346)
T ss_pred             CCEEEEcCCcHHHHHHHHHHHH---CCCeEE-EeCCCCC
Confidence            7999999998777666655433   465554 5665543

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.25  E-value=0.0011  Score=68.70  Aligned_cols=98  Identities=16%  Similarity=0.236  Sum_probs=68.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..+++|||+|.++..-...++.-.. -.+|.+|+|++++++++.+.-.. . +++.   ..+.++++.++++++||+|+.
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~-~-~~~~---~~v~~~~s~~eav~~ADIVvt  229 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAE-T-YPQI---TNVEVVDSIEEVVRGSDIVTY  229 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH-h-cCCC---ceEEEeCCHHHHHcCCCEEEE
Confidence            4689999999999999988876320 16899999999988877653211 0 1110   126677899999999999999


Q ss_pred             cCcccc----HHHHHHhhhhcCCCCCeEEE
Q 012720          206 AMPVQF----SSSFLEGISDYVDPGLPFIS  231 (458)
Q Consensus       206 aVp~~~----v~~vl~~i~~~l~~~~ivV~  231 (458)
                      |+++..    ...++.  ...+++|+.|+.
T Consensus       230 aT~s~~~~~s~~Pv~~--~~~lkpG~hv~~  257 (379)
T PRK06199        230 CNSGETGDPSTYPYVK--REWVKPGAFLLM  257 (379)
T ss_pred             ccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence            997532    122221  245678887764

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.22  E-value=0.0034  Score=63.27  Aligned_cols=159  Identities=18%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVi  204 (458)
                      |+||+|+|+ |.-|.-+-+.|+.+. ..++.++..++..-+.+.+...+.....+  ++  ... -+.++. ..+||+||
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp-~ve~~~~ss~~~~g~~~~~~~p~l~g~~~--l~--~~~-~~~~~~~~~~~DvvF   75 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHP-DVELILISSRERAGKPVSDVHPNLRGLVD--LP--FQT-IDPEKIELDECDVVF   75 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCC-CeEEEEeechhhcCCchHHhCcccccccc--cc--ccc-CChhhhhcccCCEEE
Confidence            689999996 999999999999875 35666665544322233333322221111  11  111 133332 45699999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCC----EEEEEC-cccHHHHhccCCeEE
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQP----FIALSG-PSFALELMNKLPTAM  279 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~----~~vl~g-P~~a~ei~~g~~t~v  279 (458)
                      +|+|...-.+++..+..   ++..||+++.-.-....    +..++..|.....    -..++| |..-.+-..+..-..
T Consensus        76 lalPhg~s~~~v~~l~~---~g~~VIDLSadfR~~d~----~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIA  148 (349)
T COG0002          76 LALPHGVSAELVPELLE---AGCKVIDLSADFRLKDP----EVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIA  148 (349)
T ss_pred             EecCchhHHHHHHHHHh---CCCeEEECCcccccCCH----HHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEee
Confidence            99999887777666543   46679999943322111    1222222321000    012222 333323222332223


Q ss_pred             EEccCCHHHHHHHHHHHhc
Q 012720          280 VVASKDRKLANAVQQLLAS  298 (458)
Q Consensus       280 ~i~g~d~e~~e~l~~lL~~  298 (458)
                      ..||......-.+.++++.
T Consensus       149 nPGCypTa~iLal~PL~~~  167 (349)
T COG0002         149 NPGCYPTAAILALAPLVKA  167 (349)
T ss_pred             CCCchHHHHHHHHHHHHHc
Confidence            3556666777788888876

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.21  E-value=0.0026  Score=64.45  Aligned_cols=104  Identities=16%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCC-----eEEEEeCCH--HHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQL-----KVYMLMRDP--AVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~-----~V~v~~r~~--~~~e~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      ..||+|||+ |.+|+.+|..|...+.-.     ++.++|+.+  ++++....  .+....+.      .+.....+..+.
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~------~~~~i~~~~~~~   76 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL------AGVVATTDPEEA   76 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc------CCcEEecChHHH
Confidence            469999998 999999999999877322     799999854  22221111  11110011      122333344456


Q ss_pred             cCCCCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          197 LLGADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       197 ~~~aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +++||+||++--..                -++++..+|.++.+++.+++..+|-+
T Consensus        77 ~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv  132 (323)
T TIGR01759        77 FKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA  132 (323)
T ss_pred             hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence            89999999976431                14455566777665577787788744

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.17  E-value=0.0013  Score=68.11  Aligned_cols=77  Identities=25%  Similarity=0.373  Sum_probs=52.1

Q ss_pred             EEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEE-eCC---HHhhcCCCCE
Q 012720          130 VVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIA-TTD---AKTALLGADY  202 (458)
Q Consensus       130 I~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~--g~~~~~~~~~~l~~~i~a-~~~---~~ea~~~aDi  202 (458)
                      |.|+|+|.+|..++..|++.+ ++ +|++.+|+.++++++.+.  +.....         +.+ ..|   ++++++++|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~~~~~~~---------~~~d~~~~~~l~~~~~~~dv   70 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLLGDRVEA---------VQVDVNDPESLAELLRGCDV   70 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--TTTTEEE---------EE--TTTHHHHHHHHTTSSE
T ss_pred             CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhccccceeE---------EEEecCCHHHHHHHHhcCCE
Confidence            789999999999999999986 24 899999999998888753  111110         111 112   4567889999


Q ss_pred             EEEcCccccHHHHH
Q 012720          203 CLHAMPVQFSSSFL  216 (458)
Q Consensus       203 VilaVp~~~v~~vl  216 (458)
                      ||-|++......++
T Consensus        71 Vin~~gp~~~~~v~   84 (386)
T PF03435_consen   71 VINCAGPFFGEPVA   84 (386)
T ss_dssp             EEE-SSGGGHHHHH
T ss_pred             EEECCccchhHHHH
Confidence            99999876444444

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.17  E-value=0.0019  Score=65.06  Aligned_cols=100  Identities=16%  Similarity=0.218  Sum_probs=64.1

Q ss_pred             eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--C-CHHhhcCCCCEEE
Q 012720          129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--T-DAKTALLGADYCL  204 (458)
Q Consensus       129 kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~--~-~~~ea~~~aDiVi  204 (458)
                      ||+|||+ |.+|+.+|..|+..+...++.++|+++..       |.... +.....+..+..+  + ++.++++++|+||
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-------g~a~D-L~~~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-------GVAAD-LSHIPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-------EEEch-hhcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence            7999999 99999999999988744589999987621       11100 1111112235542  2 2356789999999


Q ss_pred             EcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          205 HAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       205 laVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ++.-..                -++++.+.|.++ .++.+++..+|-.+
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPvD  120 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPVN  120 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCchh
Confidence            976531                133444455555 46788888898654

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.16  E-value=0.0013  Score=62.12  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.+|..|++.|. .+++++|.+.
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            5689999999999999999999994 4899999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.15  E-value=0.0019  Score=54.77  Aligned_cols=94  Identities=16%  Similarity=0.183  Sum_probs=60.3

Q ss_pred             EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEEcCc
Q 012720          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLHAMP  208 (458)
Q Consensus       130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVilaVp  208 (458)
                      |.|+|.|.+|..++..|.+.+  .+|++++++++.++.+.+.+....+ ++..-+      ..+++ -++++|.++++++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~~~~i~-gd~~~~------~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEELREEGVEVIY-GDATDP------EVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTSEEEE-S-TTSH------HHHHHTTGGCESEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhccccccc-ccchhh------hHHhhcCccccCEEEEccC
Confidence            679999999999999999965  7999999999999999887743211 110000      01122 2568999999998


Q ss_pred             cccHH-HHHHhhhhcCCCCCeEEEe
Q 012720          209 VQFSS-SFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       209 ~~~v~-~vl~~i~~~l~~~~ivV~~  232 (458)
                      .+..- .++..++...+...+++-+
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   72 DDEENLLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence            75433 3333444444433444433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK05086 malate dehydrogenase; Provisional

Probab=97.09  E-value=0.003  Score=63.66  Aligned_cols=102  Identities=20%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             CeEEEECc-chHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCCEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiV  203 (458)
                      |||+|||+ |.+|.+++..|.. .+..++++++++++. .+     +.... +........+..  .+++.++++++|+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~-----g~alD-l~~~~~~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TP-----GVAVD-LSHIPTAVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Cc-----ceehh-hhcCCCCceEEEeCCCCHHHHcCCCCEE
Confidence            79999999 9999999998865 233378999998753 11     10000 000000012332  34655678999999


Q ss_pred             EEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       204 ilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+|.-..                .+.++++.+.++ .++.+|+..+|-.+
T Consensus        74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~D  122 (312)
T PRK05086         74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPVN  122 (312)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCchH
Confidence            9988631                133344445444 45678888887543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.09  E-value=0.0017  Score=59.30  Aligned_cols=69  Identities=26%  Similarity=0.428  Sum_probs=49.9

Q ss_pred             EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720          130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (458)
Q Consensus       130 I~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp  208 (458)
                      |.|+|+ |.+|..++..|.+.|  ++|+++.|++++.+.  ..+.+  +..+.     +.-.++..++++++|.||.+++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~--~~~~~--~~~~d-----~~d~~~~~~al~~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAED--SPGVE--IIQGD-----LFDPDSVKAALKGADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH--CTTEE--EEESC-----TTCHHHHHHHHTTSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhccc--ccccc--cceee-----ehhhhhhhhhhhhcchhhhhhh
Confidence            789997 999999999999999  999999999987666  22221  11000     0000234567889999999998


Q ss_pred             c
Q 012720          209 V  209 (458)
Q Consensus       209 ~  209 (458)
                      .
T Consensus        70 ~   70 (183)
T PF13460_consen   70 P   70 (183)
T ss_dssp             S
T ss_pred             h
Confidence            4

...

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.09  E-value=0.0028  Score=67.74  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=67.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC---CCCc-eEEeC-C--------HH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK---LPEN-VIATT-D--------AK  194 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~---l~~~-i~a~~-~--------~~  194 (458)
                      .|+.|+|+|.+|...+..+...|  .+|++++++.++.+.++..|.....++...   -..+ .+..+ +        ..
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~  242 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA  242 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence            58999999999999999998888  789999999988887776554321111000   0000 01111 1        23


Q ss_pred             hhcCCCCEEEEcC-----ccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          195 TALLGADYCLHAM-----PVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       195 ea~~~aDiVilaV-----p~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +.++++|+||.|+     |..-+  +.++..+.+++|.+||+++
T Consensus       243 e~~~~~DIVI~TalipG~~aP~L--it~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       243 AQAKEVDIIITTALIPGKPAPKL--ITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             HHhCCCCEEEECcccCCCCCCee--ehHHHHhhCCCCCEEEEee
Confidence            4467899999999     43211  2344566788899999886

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN00106 malate dehydrogenase

Probab=97.05  E-value=0.0028  Score=64.12  Aligned_cols=100  Identities=19%  Similarity=0.214  Sum_probs=63.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEE---eCCHHhhcCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--~l~~~g~~~~~~~~~~l~~~i~a---~~~~~ea~~~a  200 (458)
                      ..||+|||+ |.+|..+|..|+..+...++.++|+++...+  .+..-  .        .+..+..   .+|..++++++
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~--~--------~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHI--N--------TPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhC--C--------cCceEEEEeCCCCHHHHcCCC
Confidence            369999999 9999999999997774358999998762111  11110  0        0112332   23446779999


Q ss_pred             CEEEEcCcc-----cc-----------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPV-----QF-----------SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~-----~~-----------v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+||++--.     ..           +.++++.+.++- ++.+++..+|-.+
T Consensus        88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD  139 (323)
T PLN00106         88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVN  139 (323)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCcc
Confidence            999997642     11           233334444443 5778888888665

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.04  E-value=0.0028  Score=62.80  Aligned_cols=97  Identities=11%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+++.|+|+|.+|.+++..|+..|. .+|++++|+.++++.+.+.....   .      .+....+..+.+.++|+||-|
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~---~------~~~~~~~~~~~~~~~DivIna  192 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGAL---G------KAELDLELQEELADFDLIINA  192 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhc---c------ceeecccchhccccCCEEEEC
Confidence            4689999999999999999998873 58999999999888876642110   0      011211333556889999999


Q ss_pred             CccccHHH--HHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSS--FLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~--vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|..-..+  ...-....++++..|+++.
T Consensus       193 Tp~g~~~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        193 TSAGMSGELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence            99642210  0000123456677888875

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.03  E-value=0.002  Score=59.31  Aligned_cols=71  Identities=15%  Similarity=0.291  Sum_probs=49.2

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|||+ |..|+.+..-..++|  |+|+.+.|++.++...  .+....       ...+.--+...+.+.+.|+||.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RG--HeVTAivRn~~K~~~~--~~~~i~-------q~Difd~~~~a~~l~g~DaVIsA   69 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRG--HEVTAIVRNASKLAAR--QGVTIL-------QKDIFDLTSLASDLAGHDAVISA   69 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCC--CeeEEEEeChHhcccc--ccceee-------cccccChhhhHhhhcCCceEEEe
Confidence            79999996 999999999999999  9999999999876443  222110       01111011223457788888887


Q ss_pred             Ccc
Q 012720          207 MPV  209 (458)
Q Consensus       207 Vp~  209 (458)
                      .-.
T Consensus        70 ~~~   72 (211)
T COG2910          70 FGA   72 (211)
T ss_pred             ccC
Confidence            753

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.03  E-value=0.0017  Score=66.20  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +|||+|+|+ |..|..+.+.|++++++ .++..+.+.+..-+.+.-        .+.    .+...+...+.++++|+||
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~--------~g~----~i~v~d~~~~~~~~vDvVf   68 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF--------KGK----ELKVEDLTTFDFSGVDIAL   68 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee--------CCc----eeEEeeCCHHHHcCCCEEE
Confidence            479999996 99999999999998721 245667665432222211        110    1222211112357899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|+|.....++...+..   .|.+||+++.
T Consensus        69 ~A~g~g~s~~~~~~~~~---~G~~VIDlS~   95 (334)
T PRK14874         69 FSAGGSVSKKYAPKAAA---AGAVVIDNSS   95 (334)
T ss_pred             ECCChHHHHHHHHHHHh---CCCEEEECCc
Confidence            99999887777766543   5778998884

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.01  E-value=0.032  Score=55.61  Aligned_cols=230  Identities=16%  Similarity=0.180  Sum_probs=135.8

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC--CCccCCCC-----CCCCceE---EeCCH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC--NCRYFPEQ-----KLPENVI---ATTDA  193 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~--~~~~~~~~-----~l~~~i~---a~~~~  193 (458)
                      |..|.++.++|+|...--+|.-|..+| +..+-+++|...+-+++.+.-.  ...++.+.     .+..++.   ...++
T Consensus         1 m~~m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~   79 (431)
T COG4408           1 MHNMLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDL   79 (431)
T ss_pred             CCcccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhH
Confidence            345778999999999999999999988 4788888877654444433210  01122111     0111221   23578


Q ss_pred             HhhcCCCCEEEEcCccccHHHHHHhh-hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE----------
Q 012720          194 KTALLGADYCLHAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL----------  262 (458)
Q Consensus       194 ~ea~~~aDiVilaVp~~~v~~vl~~i-~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl----------  262 (458)
                      +++..+.+-+|+|||+++-.+++++| -+.++.=..+|.++..++..-  .+.... ..+|.   ++.|+          
T Consensus        80 a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~m-nk~~~---daeViS~SsY~~dTk  153 (431)
T COG4408          80 AQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLM-NKAGR---DAEVISLSSYYADTK  153 (431)
T ss_pred             HHhhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHH-hhhCC---CceEEEeehhcccce
Confidence            88888999999999999999999987 344554445566665665431  122222 22342   12222          


Q ss_pred             ----ECcccHHHHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHH--------HHHHHHHHHH
Q 012720          263 ----SGPSFALELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGAL--------KNVLAIAAGI  328 (458)
Q Consensus       263 ----~gP~~a~ei~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kal--------kNi~ai~~G~  328 (458)
                          .-|.++-..+-.+  .+-+|+  .+...++.+..+|...|+.+...+....+|-....        .|=+++.. +
T Consensus       154 ~id~~~p~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~a-i  230 (431)
T COG4408         154 YIDAEQPNRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQA-I  230 (431)
T ss_pred             eecccCcchHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHH-H
Confidence                1244443322211  234554  45667889999999999999998887766643211        12122111 1


Q ss_pred             Hhcc-------cC---C--CcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          329 VVGM-------NL---G--NNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       329 ~~~~-------kl---~--~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      ....       |+   |  ......-++..-.|+.++..++|+++-.
T Consensus       231 f~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iN  277 (431)
T COG4408         231 FYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEIN  277 (431)
T ss_pred             hCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchh
Confidence            1111       11   1  2233445667778999999999987443

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.01  E-value=0.0019  Score=66.84  Aligned_cols=97  Identities=21%  Similarity=0.369  Sum_probs=62.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||+|+|+ |..|..+.+.|.++. .++|+.+.+++..-+.+...+..   +.+...+ .+.. .+.++ ++++|+||+
T Consensus        38 ~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~saG~~i~~~~~~---l~~~~~~-~~~~-~~~~~-~~~~DvVf~  110 (381)
T PLN02968         38 KKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKAGQSFGSVFPH---LITQDLP-NLVA-VKDAD-FSDVDAVFC  110 (381)
T ss_pred             ccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhcCCCchhhCcc---ccCcccc-ceec-CCHHH-hcCCCEEEE
Confidence            679999997 999999999999883 37999988765432222221111   1111110 0111 12223 578999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |+|.....+++..+    ..+..||+++.
T Consensus       111 Alp~~~s~~i~~~~----~~g~~VIDlSs  135 (381)
T PLN02968        111 CLPHGTTQEIIKAL----PKDLKIVDLSA  135 (381)
T ss_pred             cCCHHHHHHHHHHH----hCCCEEEEcCc
Confidence            99987666666553    35788999984

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=97.00  E-value=0.0064  Score=60.43  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=59.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~--e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      +||+|||+|.||..++..+.+.. +.++. +++++++..  +..++.|..             ...++.++.+.  +.|+
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~-~~elvaV~d~d~es~~la~A~~~Gi~-------------~~~~~~e~ll~~~dIDa   67 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSE-HLEMVAMVGIDPESDGLARARELGVK-------------TSAEGVDGLLANPDIDI   67 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCC-CcEEEEEEeCCcccHHHHHHHHCCCC-------------EEECCHHHHhcCCCCCE
Confidence            68999999999998887777543 26665 578877542  222222311             23346666654  6899


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |++|+|.....+......+   .|..|++.+
T Consensus        68 V~iaTp~~~H~e~a~~al~---aGk~VIdek   95 (285)
T TIGR03215        68 VFDATSAKAHARHARLLAE---LGKIVIDLT   95 (285)
T ss_pred             EEECCCcHHHHHHHHHHHH---cCCEEEECC
Confidence            9999998877776655443   477777655

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd00704 MDH Malate dehydrogenase

Probab=96.99  E-value=0.0023  Score=64.84  Aligned_cols=105  Identities=15%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             eEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          129 KVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       129 kI~IIGa-G~mG~~iA~~La~aG~~-----~~V~v~~r~~--~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      ||+|||+ |.+|+.+|..|+..+.-     .++.++|+++  +.++....   ...+... .+.....+..+..+++++|
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~---Dl~d~~~-~~~~~~~i~~~~~~~~~~a   77 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM---ELQDCAF-PLLKGVVITTDPEEAFKDV   77 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee---ehhhhcc-cccCCcEEecChHHHhCCC
Confidence            8999999 99999999999976631     2599999986  43221111   0000000 0111233434555678999


Q ss_pred             CEEEEcCccc-----c-----------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPVQ-----F-----------SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~~-----~-----------v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+||++--..     .           ++++...|.++..++.+++..+|-++
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD  130 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN  130 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence            9999865421     1           44455566666546667777776443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.99  E-value=0.003  Score=64.03  Aligned_cols=107  Identities=17%  Similarity=0.236  Sum_probs=64.5

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCC-----CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~-----~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      .||+|+|+ |.+|+.++..|...+.     +.+|.++|+++.. +.+........+.. ..+..++....+..++++++|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~g~~~Dl~d~~-~~~~~~~~~~~~~~~~l~~aD   80 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALEGVVMELQDCA-FPLLKSVVATTDPEEAFKDVD   80 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccccceeeehhhcc-ccccCCceecCCHHHHhCCCC
Confidence            58999999 9999999999987552     1489999996531 11111111100000 001123444567667789999


Q ss_pred             EEEEcCccc----c------------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          202 YCLHAMPVQ----F------------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       202 iVilaVp~~----~------------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +||++--..    .            +.++...|.++..++.++|..+|-+
T Consensus        81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv  131 (325)
T cd01336          81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA  131 (325)
T ss_pred             EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH
Confidence            999875421    1            2444456666665677777788744

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.98  E-value=0.0045  Score=65.24  Aligned_cols=124  Identities=13%  Similarity=0.115  Sum_probs=73.3

Q ss_pred             CcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012720           94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (458)
Q Consensus        94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~  173 (458)
                      .++|+....|..+.+-++.+.+.    ... -.+++|.|+|+|.+|..++..|.+.|  ++|++++++++.++.+.+.+.
T Consensus       203 ~~gD~l~v~g~~~~l~~~~~~~~----~~~-~~~~~iiIiG~G~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~~~~  275 (453)
T PRK09496        203 EAGDEVYFIGAREHIRAVMSEFG----RLE-KPVKRVMIVGGGNIGYYLAKLLEKEG--YSVKLIERDPERAEELAEELP  275 (453)
T ss_pred             cCCCEEEEEeCHHHHHHHHHHhC----ccC-CCCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHCC
Confidence            34455555555555432222222    111 13678999999999999999999988  999999999998888877542


Q ss_pred             CCccC-CCCCCCCceEEeCCHHh-hcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEE
Q 012720          174 NCRYF-PEQKLPENVIATTDAKT-ALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFI  230 (458)
Q Consensus       174 ~~~~~-~~~~l~~~i~a~~~~~e-a~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV  230 (458)
                      ..... ++..-      ...+++ .+.++|.||++++.....-++..+...+....+++
T Consensus       276 ~~~~i~gd~~~------~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        276 NTLVLHGDGTD------QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             CCeEEECCCCC------HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence            21111 11000      001111 25689999999987543333333334444444444

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.98  E-value=0.0023  Score=63.47  Aligned_cols=72  Identities=22%  Similarity=0.272  Sum_probs=57.5

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||.|. +|..+|..|.+.|  ..|+++.+...                            ++.+.+++||+||.
T Consensus       158 Gk~vvVIGrs~~VG~pla~lL~~~g--atVtv~~s~t~----------------------------~l~~~~~~ADIVIs  207 (286)
T PRK14175        158 GKNAVVIGRSHIVGQPVSKLLLQKN--ASVTILHSRSK----------------------------DMASYLKDADVIVS  207 (286)
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCch----------------------------hHHHHHhhCCEEEE
Confidence            57999999988 9999999999988  89999886431                            45566889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++...+   +.  ..++++|++||++.
T Consensus       208 Avg~p~~---i~--~~~vk~gavVIDvG  230 (286)
T PRK14175        208 AVGKPGL---VT--KDVVKEGAVIIDVG  230 (286)
T ss_pred             CCCCCcc---cC--HHHcCCCcEEEEcC
Confidence            9996542   11  13567899999876

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.97  E-value=0.0039  Score=50.41  Aligned_cols=33  Identities=36%  Similarity=0.503  Sum_probs=29.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR  160 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r  160 (458)
                      .++++|+|+|.+|..++..|.+.+ ..+|.+|+|
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            578999999999999999999984 278999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.95  E-value=0.0049  Score=63.78  Aligned_cols=106  Identities=13%  Similarity=0.113  Sum_probs=65.4

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCC-CC----eEEEE--eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKS-QL----KVYML--MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~-~~----~V~v~--~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      .||+|||+ |.+|..+|..|+..+. +.    .+.++  |+++++++...-+-.+..+    .+..++.++.+..+.+++
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~----~~~~~v~i~~~~y~~~kd  120 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY----PLLREVSIGIDPYEVFED  120 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh----hhcCceEEecCCHHHhCC
Confidence            59999999 9999999999998773 21    34445  7777665533321111000    011235544444456899


Q ss_pred             CCEEEEcCccc-----c-----------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          200 ADYCLHAMPVQ-----F-----------SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       200 aDiVilaVp~~-----~-----------v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|+||++--..     .           ++++...|.++.+++.++|..+|-++
T Consensus       121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD  174 (387)
T TIGR01757       121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN  174 (387)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH
Confidence            99999965421     1           34444556666657778888887543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.93  E-value=0.0052  Score=62.65  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.+|..|+++|. -.++++|++.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            4789999999999999999999993 2899999885

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.92  E-value=0.0028  Score=62.94  Aligned_cols=74  Identities=12%  Similarity=0.160  Sum_probs=54.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe---CCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT---TDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~---~~~~ea~~~aDiV  203 (458)
                      .+++.|||+|.+|.+++..|++.|. .+|++++|+.++++.+.+.-.. .        ..+...   ++..+.+.++|+|
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~-~--------~~~~~~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQ-V--------GVITRLEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhh-c--------CcceeccchhhhhhcccCCCEE
Confidence            4689999999999999999999983 4799999999998888764210 0        001111   1233445789999


Q ss_pred             EEcCccc
Q 012720          204 LHAMPVQ  210 (458)
Q Consensus       204 ilaVp~~  210 (458)
                      |-|+|..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9999963

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.90  E-value=0.0023  Score=58.93  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=29.6

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            68999999999999999999993 3699999885

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.88  E-value=0.0033  Score=59.86  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=31.5

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +..||+|||+|.+|+.+|..|++.|. .+++++|.+.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            35789999999999999999999994 4699999883

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.87  E-value=0.003  Score=67.38  Aligned_cols=71  Identities=15%  Similarity=0.310  Sum_probs=53.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++++|+|+|.+|.+++..|++.|  ++|++++|+.++++.+.+.. +..          .....+..+ +.++|+||.|
T Consensus       332 ~k~vlIiGaGgiG~aia~~L~~~G--~~V~i~~R~~~~~~~la~~~-~~~----------~~~~~~~~~-l~~~DiVIna  397 (477)
T PRK09310        332 NQHVAIVGAGGAAKAIATTLARAG--AELLIFNRTKAHAEALASRC-QGK----------AFPLESLPE-LHRIDIIINC  397 (477)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh-ccc----------eechhHhcc-cCCCCEEEEc
Confidence            578999999999999999999999  89999999998887776531 100          000112222 4689999999


Q ss_pred             Ccccc
Q 012720          207 MPVQF  211 (458)
Q Consensus       207 Vp~~~  211 (458)
                      +|...
T Consensus       398 tP~g~  402 (477)
T PRK09310        398 LPPSV  402 (477)
T ss_pred             CCCCC
Confidence            99643

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.86  E-value=0.0035  Score=63.79  Aligned_cols=95  Identities=19%  Similarity=0.282  Sum_probs=58.0

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCC
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGA  200 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~a  200 (458)
                      |++|+||+|+|+ |..|.-+.+.|.+.+++ .++..+ ++.+.+      |.... +.+.    .+.+. .+..+ ++++
T Consensus         1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~a------G~~l~-~~~~----~l~~~~~~~~~-~~~v   67 (336)
T PRK05671          1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESA------GHSVP-FAGK----NLRVREVDSFD-FSQV   67 (336)
T ss_pred             CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccC------CCeec-cCCc----ceEEeeCChHH-hcCC
Confidence            556789999997 99999999999976621 233333 332221      21111 1111    12221 12233 4789


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |++|+|+|......++..+.+   .|..||+++.
T Consensus        68 D~vFla~p~~~s~~~v~~~~~---~G~~VIDlS~   98 (336)
T PRK05671         68 QLAFFAAGAAVSRSFAEKARA---AGCSVIDLSG   98 (336)
T ss_pred             CEEEEcCCHHHHHHHHHHHHH---CCCeEEECch
Confidence            999999997655555555433   4788999984

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.83  E-value=0.0045  Score=67.40  Aligned_cols=96  Identities=13%  Similarity=0.233  Sum_probs=63.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVila  206 (458)
                      -+|.|+|+|.+|..+|+.|.++|  ++|+++|.++++++.+++.+....+ ++..-+      +.++++ ++++|.++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~g~~~i~-GD~~~~------~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRERGIRAVL-GNAANE------EIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHCCCeEEE-cCCCCH------HHHHhcCccccCEEEEE
Confidence            57999999999999999999999  9999999999999999876533211 111000      011221 4689999999


Q ss_pred             CccccHH-HHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSS-SFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~-~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++++... .+...++... ++..++.-.
T Consensus       489 ~~~~~~~~~iv~~~~~~~-~~~~iiar~  515 (558)
T PRK10669        489 IPNGYEAGEIVASAREKR-PDIEIIARA  515 (558)
T ss_pred             cCChHHHHHHHHHHHHHC-CCCeEEEEE
Confidence            9875432 3444444443 344454433

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.81  E-value=0.02  Score=54.24  Aligned_cols=73  Identities=18%  Similarity=0.202  Sum_probs=50.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+||.|||+|.+|..-+..|.+.|  .+|++++.+.. .++.+.+.+ +.....+         .-...+ +.++|+||.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~~~-~i~~~~~---------~~~~~d-l~~~~lVi~   75 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAEQG-GITWLAR---------CFDADI-LEGAFLVIA   75 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHHcC-CEEEEeC---------CCCHHH-hCCcEEEEE
Confidence            469999999999999999999999  99999987642 344554443 1111000         012233 678999999


Q ss_pred             cCccccH
Q 012720          206 AMPVQFS  212 (458)
Q Consensus       206 aVp~~~v  212 (458)
                      |+....+
T Consensus        76 at~d~~l   82 (205)
T TIGR01470        76 ATDDEEL   82 (205)
T ss_pred             CCCCHHH
Confidence            9887543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.79  E-value=0.0042  Score=68.26  Aligned_cols=97  Identities=14%  Similarity=0.229  Sum_probs=65.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil  205 (458)
                      .++|.|+|.|.+|..+++.|.+.|  ++++++|.++++++.+++.|... +.++..-+      +.+++ -+++||.+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDat~~------~~L~~agi~~A~~vv~  470 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANK--MRITVLERDISAVNLMRKYGYKV-YYGDATQL------ELLRAAGAEKAEAIVI  470 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhCCCeE-EEeeCCCH------HHHHhcCCccCCEEEE
Confidence            468999999999999999999998  99999999999999998766432 22211100      01122 2568999999


Q ss_pred             cCccccH-HHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFS-SSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v-~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++++.. ..++..++... |+..|+.-.
T Consensus       471 ~~~d~~~n~~i~~~~r~~~-p~~~IiaRa  498 (601)
T PRK03659        471 TCNEPEDTMKIVELCQQHF-PHLHILARA  498 (601)
T ss_pred             EeCCHHHHHHHHHHHHHHC-CCCeEEEEe
Confidence            9997543 34444455544 344444333

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.79  E-value=0.0061  Score=61.11  Aligned_cols=100  Identities=11%  Similarity=0.106  Sum_probs=61.6

Q ss_pred             EECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-
Q 012720          132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-  210 (458)
Q Consensus       132 IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-  210 (458)
                      |||+|.+|..+|..|+..+.--++.++|++++.++.....-.+...    .+..++.+..+..+.+++||+||++.-.. 
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~----~~~~~~~i~~~~~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS----FLPTPKKIRSGDYSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc----ccCCCeEEecCCHHHHCCCCEEEECCCCCC
Confidence            6999999999999999887434799999987654433221111000    01112333333335689999999976531 


Q ss_pred             ---------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          211 ---------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       211 ---------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                                     -++++.+.+.++ .++.+++..+|-.
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~  116 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNPV  116 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence                           134444556554 4567777778643

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.73  E-value=0.0088  Score=64.07  Aligned_cols=105  Identities=13%  Similarity=0.165  Sum_probs=68.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--CCCc--eE-EeCCH--------
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--LPEN--VI-ATTDA--------  193 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~--l~~~--i~-a~~~~--------  193 (458)
                      ..||.|+|+|.+|...+..+...|  .+|+++|+++++.+..++.|..........  ....  ++ .+.+.        
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            469999999999999888888888  789999999999888887664311111000  0000  00 11111        


Q ss_pred             HhhcCCCCEEEEcCcccc--HHHH-HHhhhhcCCCCCeEEEec
Q 012720          194 KTALLGADYCLHAMPVQF--SSSF-LEGISDYVDPGLPFISLS  233 (458)
Q Consensus       194 ~ea~~~aDiVilaVp~~~--v~~v-l~~i~~~l~~~~ivV~~s  233 (458)
                      .+.++++|+||.|+....  ...+ .++....+++|.+|+++.
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence            122367999999997532  1223 366667788899888875

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.69  E-value=0.017  Score=58.97  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..||+|||+ .||...+..+.+...+.++. +++++.++++++.++.             ++...+|.++++.+.|++++
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~-------------gi~~y~~~eell~d~Di~~V   68 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL-------------GVPLYCEVEELPDDIDIACV   68 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh-------------CCCccCCHHHHhcCCCEEEE
Confidence            468999999 68999998887753125655 6899999888887642             12245689998888888888


Q ss_pred             cCcc----ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          206 AMPV----QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       206 aVp~----~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      ++|+    ....++....   ++.|..|+ +-|-+..++.+.+.+..
T Consensus        69 ~ipt~~P~~~H~e~a~~a---L~aGkHVL-~EKPla~~Ea~el~~~A  111 (343)
T TIGR01761        69 VVRSAIVGGQGSALARAL---LARGIHVL-QEHPLHPRDIQDLLRLA  111 (343)
T ss_pred             EeCCCCCCccHHHHHHHH---HhCCCeEE-EcCCCCHHHHHHHHHHH
Confidence            8764    3455554443   33465544 56666543333333333

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.67  E-value=0.002  Score=58.94  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-CCCCCC----------ceE-EeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-EQKLPE----------NVI-ATTDAK  194 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~-~~~l~~----------~i~-a~~~~~  194 (458)
                      ..||+|+|+|+.|..-+..|..-|  ++|++++...+..+++...+....... ......          ... -.....
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            469999999999999999999988  999999999988777766543211110 000000          000 011344


Q ss_pred             hhcCCCCEEEEcCccc--cHHHHH-HhhhhcCCCCCeEEEec
Q 012720          195 TALLGADYCLHAMPVQ--FSSSFL-EGISDYVDPGLPFISLS  233 (458)
Q Consensus       195 ea~~~aDiVilaVp~~--~v~~vl-~~i~~~l~~~~ivV~~s  233 (458)
                      +.++.+|+||.+.-.+  ....++ ++....++++.+|++++
T Consensus        98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            5677899999866532  222222 33345567899999986

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.64  E-value=0.0048  Score=64.91  Aligned_cols=94  Identities=19%  Similarity=0.289  Sum_probs=59.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhc--------CCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANK--------KSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~a--------G~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      +++||+|+|+|.||..++..|.++        |.+.+| .+++|+.++.+.     ..        + ....+++|.++.
T Consensus         2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~-----~~--------~-~~~~~~~d~~~l   67 (426)
T PRK06349          2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG-----VD--------L-PGILLTTDPEEL   67 (426)
T ss_pred             CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC-----CC--------C-cccceeCCHHHH
Confidence            357999999999999999888654        212444 367888654321     10        0 123456788887


Q ss_pred             cC--CCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          197 LL--GADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       197 ~~--~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +.  +.|+|+.|++.. ...+.   +...++.|..||+..+..
T Consensus        68 l~d~~iDvVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~  107 (426)
T PRK06349         68 VNDPDIDIVVELMGGIEPAREL---ILKALEAGKHVVTANKAL  107 (426)
T ss_pred             hhCCCCCEEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHH
Confidence            75  579999998753 22333   334455688888665544

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.63  E-value=0.0088  Score=57.51  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=59.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCC----HHHH-------HHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRD----PAVC-------QSINEKHCNCRYFPEQKLPENVIATTDA  193 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~----~~~~-------e~l~~~g~~~~~~~~~~l~~~i~a~~~~  193 (458)
                      .+||.|+|+|.+|..+|..|.+.|. .  +|+++||+    .++.       +.+.+.. +     .    ....  .++
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~-----~----~~~~--~~l   91 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKET-N-----P----EKTG--GTL   91 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHh-c-----c----Cccc--CCH
Confidence            4689999999999999999999883 3  69999998    3332       2222210 0     0    0011  256


Q ss_pred             HhhcCCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccC
Q 012720          194 KTALLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       194 ~ea~~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      .++++++|++|-+++... .++.++.    +.++.+|..++|-
T Consensus        92 ~~~l~~~dvlIgaT~~G~~~~~~l~~----m~~~~ivf~lsnP  130 (226)
T cd05311          92 KEALKGADVFIGVSRPGVVKKEMIKK----MAKDPIVFALANP  130 (226)
T ss_pred             HHHHhcCCEEEeCCCCCCCCHHHHHh----hCCCCEEEEeCCC
Confidence            567788999999997322 2333333    3456677777753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.61  E-value=0.0068  Score=61.69  Aligned_cols=90  Identities=16%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .++|.|+|+ |.||+.+++.|+.+ | ..++++++|++++++.+..+...            ..+ .+.++++.++|+|+
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~g-v~~lilv~R~~~rl~~La~el~~------------~~i-~~l~~~l~~aDiVv  220 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTG-VAELLLVARQQERLQELQAELGG------------GKI-LSLEEALPEADIVV  220 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCC-CCEEEEEcCCHHHHHHHHHHhcc------------ccH-HhHHHHHccCCEEE
Confidence            478999998 89999999999854 4 25899999998887777653210            011 25667888999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .++...... ++.  ...++++.+++++.
T Consensus       221 ~~ts~~~~~-~I~--~~~l~~~~~viDiA  246 (340)
T PRK14982        221 WVASMPKGV-EID--PETLKKPCLMIDGG  246 (340)
T ss_pred             ECCcCCcCC-cCC--HHHhCCCeEEEEec
Confidence            988753210 010  12335678888876

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.60  E-value=0.0051  Score=60.98  Aligned_cols=72  Identities=24%  Similarity=0.303  Sum_probs=57.3

Q ss_pred             CCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~m-G~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||.|.+ |.++|..|.+.|  ..|+++....                            .++.+.++.||+||.
T Consensus       158 Gk~vvViGrs~iVGkPla~lL~~~~--atVt~~hs~t----------------------------~~l~~~~~~ADIVV~  207 (285)
T PRK14189        158 GAHAVVIGRSNIVGKPMAMLLLQAG--ATVTICHSKT----------------------------RDLAAHTRQADIVVA  207 (285)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCC--CEEEEecCCC----------------------------CCHHHHhhhCCEEEE
Confidence            679999999888 999999999988  8999864321                            256677899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++...+   +.  ..++++|++||++.
T Consensus       208 avG~~~~---i~--~~~ik~gavVIDVG  230 (285)
T PRK14189        208 AVGKRNV---LT--ADMVKPGATVIDVG  230 (285)
T ss_pred             cCCCcCc---cC--HHHcCCCCEEEEcc
Confidence            9995442   22  26788999999875

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.56  E-value=0.0048  Score=61.98  Aligned_cols=72  Identities=14%  Similarity=0.260  Sum_probs=50.4

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||.|.|+ |.+|..++..|.++|  |+|++++|+.+....+...+.... ..+      +.-..++.++++++|+||.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~~~~~l~~~~v~~v-~~D------l~d~~~l~~al~g~d~Vi~~   71 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLRKASFLKEWGAELV-YGD------LSLPETLPPSFKGVTAIIDA   71 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChHHhhhHhhcCCEEE-ECC------CCCHHHHHHHHCCCCEEEEC
Confidence            68999995 999999999999999  999999999765544443222110 001      11012345678899999998


Q ss_pred             Cc
Q 012720          207 MP  208 (458)
Q Consensus       207 Vp  208 (458)
                      +.
T Consensus        72 ~~   73 (317)
T CHL00194         72 ST   73 (317)
T ss_pred             CC
Confidence            65

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.55  E-value=0.007  Score=66.76  Aligned_cols=92  Identities=17%  Similarity=0.301  Sum_probs=64.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hh-hcCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aDi  202 (458)
                      ..+|.|+|.|.+|..+|+.|.++|  ++++++|.++++++.+++.|... +.++.         +++   ++ -++++|.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g~~v-~~GDa---------t~~~~L~~agi~~A~~  467 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRKFGMKV-FYGDA---------TRMDLLESAGAAKAEV  467 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhcCCeE-EEEeC---------CCHHHHHhcCCCcCCE
Confidence            468999999999999999999998  99999999999999998866432 22221         122   21 2468999


Q ss_pred             EEEcCcccc-HHHHHHhhhhcCCCCCeEEE
Q 012720          203 CLHAMPVQF-SSSFLEGISDYVDPGLPFIS  231 (458)
Q Consensus       203 VilaVp~~~-v~~vl~~i~~~l~~~~ivV~  231 (458)
                      +|+++.++. ...++..++.+.+ +..++.
T Consensus       468 vvv~~~d~~~n~~i~~~ar~~~p-~~~iia  496 (621)
T PRK03562        468 LINAIDDPQTSLQLVELVKEHFP-HLQIIA  496 (621)
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCC-CCeEEE
Confidence            999998754 3444444444443 434443

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.53  E-value=0.0083  Score=59.66  Aligned_cols=72  Identities=18%  Similarity=0.275  Sum_probs=55.4

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||.|. .|.++|..|.+.|  ..|++++|...                            ++.+.++++|+||.
T Consensus       159 Gk~vvViG~gg~vGkpia~~L~~~g--atVtv~~~~t~----------------------------~L~~~~~~aDIvI~  208 (283)
T PRK14192        159 GKHAVVVGRSAILGKPMAMMLLNAN--ATVTICHSRTQ----------------------------NLPELVKQADIIVG  208 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCC--CEEEEEeCCch----------------------------hHHHHhccCCEEEE
Confidence            57999999998 9999999999998  79999987321                            34455689999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |++...   .+.  ...++++.+|+++.
T Consensus       209 AtG~~~---~v~--~~~lk~gavViDvg  231 (283)
T PRK14192        209 AVGKPE---LIK--KDWIKQGAVVVDAG  231 (283)
T ss_pred             ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence            996332   111  24578899998874

>PRK08328 hypothetical protein; Provisional

Probab=96.51  E-value=0.011  Score=57.11  Aligned_cols=43  Identities=21%  Similarity=0.341  Sum_probs=35.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ..||+|+|+|..|+.++..|++.|. .+++++|.+.-....+.+
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~R   69 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQTPELSNLNR   69 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCccChhhhcc
Confidence            4689999999999999999999995 579999987644444443

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.49  E-value=0.0095  Score=60.43  Aligned_cols=105  Identities=16%  Similarity=0.202  Sum_probs=61.6

Q ss_pred             eEEEECc-chHHHHHHHHHHhcCCC-----CeEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          129 KVVVLGG-GSFGTAMAAHVANKKSQ-----LKVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       129 kI~IIGa-G~mG~~iA~~La~aG~~-----~~V~v~~r~~~~--~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      ||+|||+ |.+|+.+|..|+..+.-     +++.++|+.+..  ++....   ...+.. ..+...+...++..+.++++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~---Dl~d~~-~~~~~~~~~~~~~~~~~~~a   76 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM---ELMDCA-FPLLDGVVPTHDPAVAFTDV   76 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe---ehhccc-chhcCceeccCChHHHhCCC
Confidence            6999999 99999999999976520     259999986532  211110   000000 00112233333444568999


Q ss_pred             CEEEEcCccc----c------------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPVQ----F------------SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~~----~------------v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+||++--..    .            ++++...|.++..++.+++..+|-++
T Consensus        77 DiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD  129 (324)
T TIGR01758        77 DVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN  129 (324)
T ss_pred             CEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence            9999976431    1            33444556665446677777887443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=96.48  E-value=0.0033  Score=58.31  Aligned_cols=81  Identities=22%  Similarity=0.270  Sum_probs=49.3

Q ss_pred             eEEEECcchHHHHH--HHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          129 KVVVLGGGSFGTAM--AAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       129 kI~IIGaG~mG~~i--A~~La~aG-~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      ||+|||+|+.-.+.  -..+.... . ..++.++|+++++++.+.+...  ++......+-.+..++|.++|+++||+||
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~--~~~~~~~~~~~v~~ttd~~eAl~gADfVi   78 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLAR--RMVEEAGADLKVEATTDRREALEGADFVI   78 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHH--HHHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHH--HHHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence            79999999875552  23333322 1 2489999999988764433210  01111112345788999999999999999


Q ss_pred             EcCcccc
Q 012720          205 HAMPVQF  211 (458)
Q Consensus       205 laVp~~~  211 (458)
                      .++-.-.
T Consensus        79 ~~irvGg   85 (183)
T PF02056_consen   79 NQIRVGG   85 (183)
T ss_dssp             E---TTH
T ss_pred             EEeeecc
Confidence            9987543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.47  E-value=0.028  Score=54.70  Aligned_cols=147  Identities=19%  Similarity=0.197  Sum_probs=86.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +|||+|.|+ |.||..+.+.+.+.. ++++. .++|.....  ..+..   ..+-+. -+-++.+++++.....++|++|
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~--~g~d~---ge~~g~-~~~gv~v~~~~~~~~~~~DV~I   74 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLS--LGSDA---GELAGL-GLLGVPVTDDLLLVKADADVLI   74 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccc--cccch---hhhccc-cccCceeecchhhcccCCCEEE
Confidence            689999998 999999999998875 35544 567765321  10000   000000 0113445566667778999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~  284 (458)
                      =.+-+..+.+.++-...+   +..+|.-+.|+..+..+.+.+..++        +.++..|++..-+.           -
T Consensus        75 DFT~P~~~~~~l~~~~~~---~~~lVIGTTGf~~e~~~~l~~~a~~--------v~vv~a~NfSiGvn-----------l  132 (266)
T COG0289          75 DFTTPEATLENLEFALEH---GKPLVIGTTGFTEEQLEKLREAAEK--------VPVVIAPNFSLGVN-----------L  132 (266)
T ss_pred             ECCCchhhHHHHHHHHHc---CCCeEEECCCCCHHHHHHHHHHHhh--------CCEEEeccchHHHH-----------H
Confidence            877766666666554442   3445555559988754444433322        34667777654211           0


Q ss_pred             CHHHHHHHHHHHhcCCCeEE
Q 012720          285 DRKLANAVQQLLASKHLRIS  304 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~  304 (458)
                      -...++++.++|.  ++.+.
T Consensus       133 l~~l~~~aak~l~--~~DiE  150 (266)
T COG0289         133 LFKLAEQAAKVLD--DYDIE  150 (266)
T ss_pred             HHHHHHHHHHhcC--CCCEE
Confidence            1345677777777  44444

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.43  E-value=0.018  Score=58.84  Aligned_cols=104  Identities=19%  Similarity=0.261  Sum_probs=59.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc--------CCCCeEE-EEeCC----------HHHHHHHHhhcCCCccCCCCCCCCce
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRD----------PAVCQSINEKHCNCRYFPEQKLPENV  187 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a--------G~~~~V~-v~~r~----------~~~~e~l~~~g~~~~~~~~~~l~~~i  187 (458)
                      .+||+|+|+|.||..++..|.+.        |.+.+|. ++|++          .+.+....+.......     ++ ..
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~-----~~-~~   75 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD-----YP-EG   75 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc-----Cc-cc
Confidence            46999999999999999999765        3125554 55653          2222232222110000     01 11


Q ss_pred             EEeCCHHhhc--CCCCEEEEcCccccH--HHHHHhhhhcCCCCCeEEEeccCC
Q 012720          188 IATTDAKTAL--LGADYCLHAMPVQFS--SSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       188 ~a~~~~~ea~--~~aDiVilaVp~~~v--~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ..+.+.++++  .+.|+|+.|+|+...  +...+-+...+..|..||+..++.
T Consensus        76 ~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~p  128 (341)
T PRK06270         76 GGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGP  128 (341)
T ss_pred             cccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHH
Confidence            1234677766  368999999997432  222233345556688888765543

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.43  E-value=0.013  Score=52.17  Aligned_cols=72  Identities=21%  Similarity=0.366  Sum_probs=57.8

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|.|+| ....|..+|..|.+.|  ..|++.+++..                            ++++.+++||+|+.
T Consensus        28 gk~v~VvGrs~~vG~pla~lL~~~g--atV~~~~~~t~----------------------------~l~~~v~~ADIVvs   77 (140)
T cd05212          28 GKKVLVVGRSGIVGAPLQCLLQRDG--ATVYSCDWKTI----------------------------QLQSKVHDADVVVV   77 (140)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEeCCCCc----------------------------CHHHHHhhCCEEEE
Confidence            67999999 5889999999999988  89998876431                            56677899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+   +.  ..++++|++|++..
T Consensus        78 Atg~~~~---i~--~~~ikpGa~Vidvg  100 (140)
T cd05212          78 GSPKPEK---VP--TEWIKPGATVINCS  100 (140)
T ss_pred             ecCCCCc---cC--HHHcCCCCEEEEcC
Confidence            9997643   21  45688999999765

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.38  E-value=0.01  Score=60.66  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=58.2

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDi  202 (458)
                      +.+||+|+|+ |..|..+.+.|.+.++ ..++.++...+..-+.+...+        .    .+.+. .+. +.+.++|+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~--------~----~~~v~~~~~-~~~~~~D~   72 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG--------R----DYTVEELTE-DSFDGVDI   72 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC--------c----eeEEEeCCH-HHHcCCCE
Confidence            3579999996 9999999999998762 124444433221100111111        0    12222 133 34588999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ||+|+|.....++...+..   .|..||+++.
T Consensus        73 vf~a~p~~~s~~~~~~~~~---~g~~VIDlS~  101 (344)
T PLN02383         73 ALFSAGGSISKKFGPIAVD---KGAVVVDNSS  101 (344)
T ss_pred             EEECCCcHHHHHHHHHHHh---CCCEEEECCc
Confidence            9999998877777665433   5889999984

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.37  E-value=0.0047  Score=61.22  Aligned_cols=97  Identities=20%  Similarity=0.265  Sum_probs=67.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      -||+|||.|.+|+--|+...--|  .+|++.|++.+++..+......       ++.--..-..++++++..+|+||-+|
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~~-------rv~~~~st~~~iee~v~~aDlvIgaV  239 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFGG-------RVHTLYSTPSNIEEAVKKADLVIGAV  239 (371)
T ss_pred             ccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhCc-------eeEEEEcCHHHHHHHhhhccEEEEEE
Confidence            58999999999999888777555  8999999998877666543110       00000011135677889999999887


Q ss_pred             cc---ccHHHHHHhhhhcCCCCCeEEEec
Q 012720          208 PV---QFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       208 p~---~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      --   .+=.=+.++..+.++||++||++.
T Consensus       240 LIpgakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence            42   222234466777899999999975

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.35  E-value=0.0091  Score=60.78  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=61.4

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCC
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGA  200 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~a  200 (458)
                      |++.+||+|||+ |..|.-+.+.|.++.+ ..++..+......       |.... +.+.    .+.+. ++++. ..++
T Consensus         1 ~~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa-------G~~~~-~~~~----~~~v~-~~~~~~~~~~   67 (336)
T PRK08040          1 MSEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA-------GETLR-FGGK----SVTVQ-DAAEFDWSQA   67 (336)
T ss_pred             CCCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC-------CceEE-ECCc----ceEEE-eCchhhccCC
Confidence            456789999997 9999999999998532 2466666443221       22111 1111    12332 33332 3689


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |++|+|+|.....++...+.+   .|..||+++.
T Consensus        68 Dvvf~a~p~~~s~~~~~~~~~---~g~~VIDlS~   98 (336)
T PRK08040         68 QLAFFVAGREASAAYAEEATN---AGCLVIDSSG   98 (336)
T ss_pred             CEEEECCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence            999999998877776666543   5889999984

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.34  E-value=0.015  Score=49.95  Aligned_cols=74  Identities=12%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             CeEEEEC----cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          128 NKVVVLG----GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIG----aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      ++|+|||    .+.+|..+...|.++|  ++|+.++.....+                   .++....+++|.-...|++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G--~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDla   59 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAG--YEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLA   59 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCC--CEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEE
Confidence            4799999    6999999999999998  9999887654211                   1345666887733789999


Q ss_pred             EEcCccccHHHHHHhhhhc
Q 012720          204 LHAMPVQFSSSFLEGISDY  222 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~  222 (458)
                      ++++|...+.++++++...
T Consensus        60 vv~~~~~~~~~~v~~~~~~   78 (116)
T PF13380_consen   60 VVCVPPDKVPEIVDEAAAL   78 (116)
T ss_dssp             EE-S-HHHHHHHHHHHHHH
T ss_pred             EEEcCHHHHHHHHHHHHHc
Confidence            9999999999999998664

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.34  E-value=0.015  Score=55.94  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|+|+|.+|+.+|..|++.|. .+++++|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            5699999999999999999999995 5788887654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.31  E-value=0.0075  Score=63.57  Aligned_cols=79  Identities=22%  Similarity=0.282  Sum_probs=50.1

Q ss_pred             CeEEEECcchH-HHHHHHHHHhcC--C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          128 NKVVVLGGGSF-GTAMAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~m-G~~iA~~La~aG--~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |||+|||+|+. +..+..-|....  . .-+|+++|.++++++.+.+...  ++......+-.+..++|.++|+++||+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~--~~~~~~g~~~~v~~Ttdr~eAl~gADfV   78 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK--ILFKENYPEIKFVYTTDPEEAFTDADFV   78 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH--HHHHhhCCCeEEEEECCHHHHhCCCCEE
Confidence            79999999984 111222333221  1 2689999999987665433110  0111111233578899999999999999


Q ss_pred             EEcCc
Q 012720          204 LHAMP  208 (458)
Q Consensus       204 ilaVp  208 (458)
                      |.+.-
T Consensus        79 i~~ir   83 (437)
T cd05298          79 FAQIR   83 (437)
T ss_pred             EEEee
Confidence            99874

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.012  Score=61.78  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      ..++|.|||.|.+|.++|..|.+.|  ++|+++|++...
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G--~~V~g~D~~~~~   38 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKG--VYVIGVDKSLEA   38 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCC--CEEEEEeCCccc
Confidence            3468999999999999999999999  899999987653

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.24  E-value=0.0072  Score=49.95  Aligned_cols=78  Identities=12%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi  202 (458)
                      ..||+|+|+|++|.+++..+.+ .|  +.+ .++|.++++.      |..   .      .++.+..+.+++.+.  .|+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g--~~i~~~~dv~~~~~------G~~---i------~gipV~~~~~~l~~~~~i~i   65 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRG--FGIVAVFDVDPEKI------GKE---I------GGIPVYGSMDELEEFIEIDI   65 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHC--ECEEEEEEECTTTT------TSE---E------TTEEEESSHHHHHHHCTTSE
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcC--CCCEEEEEcCCCcc------CcE---E------CCEEeeccHHHhhhhhCCCE
Confidence            4589999999999999865543 34  554 4678887532      111   0      135555566665444  999


Q ss_pred             EEEcCccccHHHHHHhhhh
Q 012720          203 CLHAMPVQFSSSFLEGISD  221 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~  221 (458)
                      .++|||+....+++.++..
T Consensus        66 aii~VP~~~a~~~~~~~~~   84 (96)
T PF02629_consen   66 AIITVPAEAAQEVADELVE   84 (96)
T ss_dssp             EEEES-HHHHHHHHHHHHH
T ss_pred             EEEEcCHHHHHHHHHHHHH
Confidence            9999999888888877655

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK10206 putative oxidoreductase; Provisional

Probab=96.23  E-value=0.018  Score=58.86  Aligned_cols=95  Identities=14%  Similarity=0.109  Sum_probs=57.5

Q ss_pred             CCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      +.||||||+|.++.. .+..+.....+.+|. +++++++.. +..+..      +      .+..++|.++.+.  +.|+
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~------~------~~~~~~~~~ell~~~~iD~   67 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIY------S------HIHFTSDLDEVLNDPDVKL   67 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhc------C------CCcccCCHHHHhcCCCCCE
Confidence            368999999997753 234343221126665 688887543 333221      0      1345568888875  6799


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      |++|+|.....++......   .|..|+ +-|-+..
T Consensus        68 V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~   99 (344)
T PRK10206         68 VVVCTHADSHFEYAKRALE---AGKNVL-VEKPFTP   99 (344)
T ss_pred             EEEeCCchHHHHHHHHHHH---cCCcEE-EecCCcC
Confidence            9999998877666655433   354443 4555543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.23  E-value=0.012  Score=59.97  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.+|..|+++|. .+++++|.+.
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            5789999999999999999999993 3899999875

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.22  E-value=0.024  Score=57.84  Aligned_cols=101  Identities=15%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCC-CCceEEe-CCHHhhcCCCCEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKL-PENVIAT-TDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l-~~~i~a~-~~~~ea~~~aDiV  203 (458)
                      |||+|+|+ |.||..++..|.++. .++|..+ ++....-+.+.+......| .+..- ...+.+. .+. +...++|+|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~-~~~l~~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~DvV   77 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHP-YFELAKVVASPRSAGKRYGEAVKWIEP-GDMPEYVRDLPIVEPEP-VASKDVDIV   77 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-CceEEEEEEChhhcCCcchhhcccccc-CCCccccceeEEEeCCH-HHhccCCEE
Confidence            58999996 999999999998865 2577755 4443211111111000000 00000 0112222 133 345789999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ++|+|.....++...+..   .|..+|+++.
T Consensus        78 f~a~p~~~s~~~~~~~~~---~G~~VIDlsg  105 (341)
T TIGR00978        78 FSALPSEVAEEVEPKLAE---AGKPVFSNAS  105 (341)
T ss_pred             EEeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence            999998876666654433   4778888873

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.16  E-value=0.031  Score=57.29  Aligned_cols=101  Identities=21%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCcc--CCCCCCCCceEEe-CCHHhhcCCCC
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRY--FPEQKLPENVIAT-TDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~--~~~~~l~~~i~a~-~~~~ea~~~aD  201 (458)
                      ++||+|+| .|.+|..+...|.+.. ..+++++.+++.........-. ...+  +.+. . ..+.+. .++++ +.++|
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p-~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~~D   78 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHP-WFEVTALAASERSAGKTYGEAVRWQLDGPIPEE-V-ADMEVVSTDPEA-VDDVD   78 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCC-CceEEEEEcChhhcCCccccccccccccccccc-c-cceEEEeCCHHH-hcCCC
Confidence            58999998 7999999999999765 2588877565533221111000 0000  0000 0 112222 25544 57899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|++|+|......+.+.+..   .|..+|+++.
T Consensus        79 vVf~a~p~~~s~~~~~~~~~---~G~~vIDls~  108 (349)
T PRK08664         79 IVFSALPSDVAGEVEEEFAK---AGKPVFSNAS  108 (349)
T ss_pred             EEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence            99999998766666554433   4777888874

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=96.15  E-value=0.0072  Score=57.47  Aligned_cols=79  Identities=14%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             CCeEEEECcchHHHHHHHHHH--hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La--~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      ..+|+|||+|.+|..++..+.  ..|  +++. ++|++++......         .+.    .+...+++.+.++  +.|
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g--~~ivgv~D~d~~~~~~~i---------~g~----~v~~~~~l~~li~~~~iD  148 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRG--FKIVAAFDVDPEKIGTKI---------GGI----PVYHIDELEEVVKENDIE  148 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCC--cEEEEEEECChhhcCCEe---------CCe----EEcCHHHHHHHHHHCCCC
Confidence            468999999999999998643  344  7776 5788765331100         010    0112235556554  499


Q ss_pred             EEEEcCccccHHHHHHhhh
Q 012720          202 YCLHAMPVQFSSSFLEGIS  220 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~  220 (458)
                      .+++|+|.....++...+.
T Consensus       149 ~ViIa~P~~~~~~i~~~l~  167 (213)
T PRK05472        149 IGILTVPAEAAQEVADRLV  167 (213)
T ss_pred             EEEEeCCchhHHHHHHHHH
Confidence            9999999877666655443

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=96.14  E-value=0.011  Score=62.05  Aligned_cols=79  Identities=20%  Similarity=0.249  Sum_probs=49.7

Q ss_pred             CeEEEECcchH-HHHHHHHHHhcC--C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          128 NKVVVLGGGSF-GTAMAAHVANKK--S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~m-G~~iA~~La~aG--~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |||+|||+|+. ...+...|++..  . ..+|+++|.++++.+.+.+...  ++......+-.+..++|.++|+++||+|
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~--~~~~~~g~~~~v~~ttD~~~Al~gADfV   78 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK--RYVEEVGADIKFEKTMDLEDAIIDADFV   78 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence            69999999983 212233333222  1 2689999999987664332110  0001111123578899999999999999


Q ss_pred             EEcCc
Q 012720          204 LHAMP  208 (458)
Q Consensus       204 ilaVp  208 (458)
                      |.+.-
T Consensus        79 i~~ir   83 (425)
T cd05197          79 INQFR   83 (425)
T ss_pred             EEeee
Confidence            99874

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.13  E-value=0.023  Score=59.97  Aligned_cols=69  Identities=22%  Similarity=0.251  Sum_probs=47.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHH----HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVC----QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~----e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      .++|.|+|+|.+|.++|..|++.|  ++|++++++. +.+    +++.+.+..            +...+..++...++|
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~d   70 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIE------------LVLGEYPEEFLEGVD   70 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCE------------EEeCCcchhHhhcCC
Confidence            478999999999999999999999  9999999975 223    223222221            111112223456799


Q ss_pred             EEEEcCcc
Q 012720          202 YCLHAMPV  209 (458)
Q Consensus       202 iVilaVp~  209 (458)
                      +||.+.-.
T Consensus        71 ~vv~~~g~   78 (450)
T PRK14106         71 LVVVSPGV   78 (450)
T ss_pred             EEEECCCC
Confidence            99998753

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.12  E-value=0.015  Score=52.87  Aligned_cols=72  Identities=24%  Similarity=0.332  Sum_probs=50.4

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|.|||-+ .+|.+++..|.+.|  ..|++.....+                            ++++.++.||+||.
T Consensus        36 Gk~v~VvGrs~~VG~Pla~lL~~~~--atVt~~h~~T~----------------------------~l~~~~~~ADIVVs   85 (160)
T PF02882_consen   36 GKKVVVVGRSNIVGKPLAMLLLNKG--ATVTICHSKTK----------------------------NLQEITRRADIVVS   85 (160)
T ss_dssp             T-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TTSS----------------------------SHHHHHTTSSEEEE
T ss_pred             CCEEEEECCcCCCChHHHHHHHhCC--CeEEeccCCCC----------------------------cccceeeeccEEee
Confidence            6799999976 69999999999998  89998766431                            55666789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+   +.  ..++++|.+||++.
T Consensus        86 a~G~~~~---i~--~~~ik~gavVIDvG  108 (160)
T PF02882_consen   86 AVGKPNL---IK--ADWIKPGAVVIDVG  108 (160)
T ss_dssp             -SSSTT----B---GGGS-TTEEEEE--
T ss_pred             eeccccc---cc--cccccCCcEEEecC
Confidence            9986443   11  35688999999875

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.12  E-value=0.018  Score=57.17  Aligned_cols=72  Identities=18%  Similarity=0.240  Sum_probs=57.0

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||-|. +|.++|..|.+.|  ..|+++.+..                            .++.+.++.||+||.
T Consensus       159 Gk~vvViGrs~iVG~Pla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvi~  208 (285)
T PRK10792        159 GLNAVVVGASNIVGRPMSLELLLAG--CTVTVCHRFT----------------------------KNLRHHVRNADLLVV  208 (285)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHCC--CeEEEEECCC----------------------------CCHHHHHhhCCEEEE
Confidence            57999999988 9999999999888  8999987542                            156677899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.....   +.  ..++++|++||++.
T Consensus       209 avG~p~~---v~--~~~vk~gavVIDvG  231 (285)
T PRK10792        209 AVGKPGF---IP--GEWIKPGAIVIDVG  231 (285)
T ss_pred             cCCCccc---cc--HHHcCCCcEEEEcc
Confidence            9964332   11  26678899999876

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.11  E-value=0.014  Score=48.89  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=50.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|.|||.|.+|..=+..|.+.|  .+|++++.+.+..+    ....            . .....++.+.++|+|+.+
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~~~~~----~~i~------------~-~~~~~~~~l~~~~lV~~a   67 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEIEFSE----GLIQ------------L-IRREFEEDLDGADLVFAA   67 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSEHHHH----TSCE------------E-EESS-GGGCTTESEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCchhhhh----hHHH------------H-HhhhHHHHHhhheEEEec
Confidence            578999999999999999999999  99999999862122    1110            0 011223447889999999


Q ss_pred             CccccHHHHHHhh
Q 012720          207 MPVQFSSSFLEGI  219 (458)
Q Consensus       207 Vp~~~v~~vl~~i  219 (458)
                      +....+.+.+...
T Consensus        68 t~d~~~n~~i~~~   80 (103)
T PF13241_consen   68 TDDPELNEAIYAD   80 (103)
T ss_dssp             SS-HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9876655544443

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.11  E-value=0.013  Score=58.39  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=57.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCH---HHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDP---AVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~-V~v~~r~~---~~~e~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aD  201 (458)
                      .+++.|+|+|.+|.+++..|++.|  .+ |++++|+.   ++++++.+.- ...+ +.... ...+.-..+.++.+..+|
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G--~~~V~I~~R~~~~~~~a~~l~~~l-~~~~-~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDG--AKEITIFNIKDDFYERAEQTAEKI-KQEV-PECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCchHHHHHHHHHHHH-hhcC-CCceeEEechhhhhHHHhhhccCC
Confidence            467999999999999999999999  65 99999986   5555554321 0000 00000 000000012233456789


Q ss_pred             EEEEcCcccc---HHHHHHhhhhcCCCCCeEEEec
Q 012720          202 YCLHAMPVQF---SSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       202 iVilaVp~~~---v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +||-|+|..-   .....-.-...+.++.+++++.
T Consensus       202 ilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v  236 (289)
T PRK12548        202 ILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTV  236 (289)
T ss_pred             EEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEec
Confidence            9999998521   1100000012355667777765

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.09  E-value=0.012  Score=58.69  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ||.|||+|.+|+.+|..|+..|. .+++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGV-g~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGV-RHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence            69999999999999999999995 466666644

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.07  E-value=0.02  Score=50.61  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=29.4

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            68999999999999999999993 3799998774

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.06  E-value=0.012  Score=64.06  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ..||.|+|+|..|+..|..|+..|. -+++++|.+
T Consensus       338 ~~kVLIvGaGGLGs~VA~~La~~GV-g~ItlVD~D  371 (664)
T TIGR01381       338 QLKVLLLGAGTLGCNVARCLIGWGV-RHITFVDNG  371 (664)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCC
Confidence            4689999999999999999999995 467777754

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.03  E-value=0.047  Score=55.41  Aligned_cols=80  Identities=19%  Similarity=0.181  Sum_probs=53.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcC-CCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALL-GADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~-~aDiV  203 (458)
                      ..+|+|+|+|.+|.. |-.+++ .|  .+|+.++|++++.+..++.|....+          ... .+..+.++ .+|+|
T Consensus       167 G~~V~I~G~GGlGh~-avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd~~i----------~~~~~~~~~~~~~~~d~i  233 (339)
T COG1064         167 GKWVAVVGAGGLGHM-AVQYAKAMG--AEVIAITRSEEKLELAKKLGADHVI----------NSSDSDALEAVKEIADAI  233 (339)
T ss_pred             CCEEEEECCcHHHHH-HHHHHHHcC--CeEEEEeCChHHHHHHHHhCCcEEE----------EcCCchhhHHhHhhCcEE
Confidence            468999999999985 555555 67  9999999999999888887754221          111 12222222 39999


Q ss_pred             EEcCccccHHHHHHhh
Q 012720          204 LHAMPVQFSSSFLEGI  219 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i  219 (458)
                      |.+++...+...++-+
T Consensus       234 i~tv~~~~~~~~l~~l  249 (339)
T COG1064         234 IDTVGPATLEPSLKAL  249 (339)
T ss_pred             EECCChhhHHHHHHHH
Confidence            9999944455544443

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.02  E-value=0.055  Score=53.17  Aligned_cols=44  Identities=11%  Similarity=0.367  Sum_probs=40.1

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~  171 (458)
                      .++++.|-|+ +.+|..+|..|+++|  ++|+++.|++++++++.++
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g--~~liLvaR~~~kL~~la~~   49 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRG--YNLILVARREDKLEALAKE   49 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHH
Confidence            4578999996 999999999999999  9999999999999888764

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.96  E-value=0.027  Score=55.88  Aligned_cols=97  Identities=19%  Similarity=0.243  Sum_probs=64.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+++.|+|+|..+.+++..|++.|. .++++++|+.++++++.+.-....  ..    .......+.+. ..++|+||-|
T Consensus       126 ~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~--~~----~~~~~~~~~~~-~~~~dliINa  197 (283)
T COG0169         126 GKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELG--AA----VEAAALADLEG-LEEADLLINA  197 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhcc--cc----ccccccccccc-ccccCEEEEC
Confidence            4789999999999999999999993 579999999999888876421100  00    00111122222 2269999999


Q ss_pred             Cccc--cH--HHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQ--FS--SSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~--~v--~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|..  .-  ...+.  ...++++.++.++.
T Consensus       198 Tp~Gm~~~~~~~~~~--~~~l~~~~~v~D~v  226 (283)
T COG0169         198 TPVGMAGPEGDSPVP--AELLPKGAIVYDVV  226 (283)
T ss_pred             CCCCCCCCCCCCCCc--HHhcCcCCEEEEec
Confidence            9952  11  11222  44566788888875

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.96  E-value=0.014  Score=59.54  Aligned_cols=88  Identities=17%  Similarity=0.288  Sum_probs=57.1

Q ss_pred             eEEEEC-cchHHHHHHHHHHhcCCCCeE---EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEE
Q 012720          129 KVVVLG-GGSFGTAMAAHVANKKSQLKV---YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYC  203 (458)
Q Consensus       129 kI~IIG-aG~mG~~iA~~La~aG~~~~V---~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiV  203 (458)
                      ||+|+| .|..|..+...|.+++  |.+   .++.+.+..-+.+...+        .    .+... .+.+ .+.++|++
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~--hp~~~l~~~as~~~~g~~~~~~~--------~----~~~~~~~~~~-~~~~~D~v   65 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERN--FPIDKLVLLASDRSAGRKVTFKG--------K----ELEVNEAKIE-SFEGIDIA   65 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCC--CChhhEEEEeccccCCCeeeeCC--------e----eEEEEeCChH-HhcCCCEE
Confidence            699999 5999999999999987  543   34555543211221111        0    12221 1333 35889999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |+|++.....++...+..   .|.+||+++.
T Consensus        66 ~~a~g~~~s~~~a~~~~~---~G~~VID~ss   93 (339)
T TIGR01296        66 LFSAGGSVSKEFAPKAAK---CGAIVIDNTS   93 (339)
T ss_pred             EECCCHHHHHHHHHHHHH---CCCEEEECCH
Confidence            999999887777666543   5778998873

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.95  E-value=0.13  Score=48.89  Aligned_cols=79  Identities=19%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|.|||.|..|..=+..|.+.|  .+|+++.... +....+...+.- ..         +.-.-++++ +.++++||.
T Consensus        12 ~k~VlvvGgG~va~rKa~~ll~~g--a~v~Vvs~~~~~el~~~~~~~~i-~~---------~~~~~~~~~-~~~~~lvia   78 (210)
T COG1648          12 GKKVLVVGGGSVALRKARLLLKAG--ADVTVVSPEFEPELKALIEEGKI-KW---------IEREFDAED-LDDAFLVIA   78 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC--CEEEEEcCCccHHHHHHHHhcCc-ch---------hhcccChhh-hcCceEEEE
Confidence            579999999999999999999999  9999998765 445555544321 00         010113444 456999999


Q ss_pred             cCccccHHHHHHh
Q 012720          206 AMPVQFSSSFLEG  218 (458)
Q Consensus       206 aVp~~~v~~vl~~  218 (458)
                      |+.+..+.+-+..
T Consensus        79 At~d~~ln~~i~~   91 (210)
T COG1648          79 ATDDEELNERIAK   91 (210)
T ss_pred             eCCCHHHHHHHHH
Confidence            9998765554433

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.95  E-value=0.016  Score=55.27  Aligned_cols=71  Identities=21%  Similarity=0.313  Sum_probs=51.3

Q ss_pred             EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       130 I~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |+|+|+ |.+|..++..|.+.+  ++|+++.|+..  ..+.+...|.... ..+.      .-.+++.++++++|.||++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~--~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~------~~~~~l~~al~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAG--FSVRALVRDPSSDRAQQLQALGAEVV-EADY------DDPESLVAALKGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT--GCEEEEESSSHHHHHHHHHHTTTEEE-ES-T------T-HHHHHHHHTTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCC--CCcEEEEeccchhhhhhhhcccceEe-eccc------CCHHHHHHHHcCCceEEee
Confidence            789997 999999999999988  99999999863  4566666554211 0000      0112455678999999999


Q ss_pred             Ccc
Q 012720          207 MPV  209 (458)
Q Consensus       207 Vp~  209 (458)
                      ++.
T Consensus        72 ~~~   74 (233)
T PF05368_consen   72 TPP   74 (233)
T ss_dssp             SSC
T ss_pred             cCc
Confidence            993

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.93  E-value=0.15  Score=48.82  Aligned_cols=81  Identities=14%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|.|||.|.++..=+..|.+.|  .+|+++...- +.+..+.+.+. ....         .-.-+..+ +.++++||.
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~~~-i~~~---------~r~~~~~d-l~g~~LVia   91 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKYGN-LKLI---------KGNYDKEF-IKDKHLIVI   91 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhCCC-EEEE---------eCCCChHH-hCCCcEEEE
Confidence            568999999999999999999999  8999998653 23444443321 0100         00013334 578999999


Q ss_pred             cCccccHHHHHHhhh
Q 012720          206 AMPVQFSSSFLEGIS  220 (458)
Q Consensus       206 aVp~~~v~~vl~~i~  220 (458)
                      |+....+-.-+....
T Consensus        92 ATdD~~vN~~I~~~a  106 (223)
T PRK05562         92 ATDDEKLNNKIRKHC  106 (223)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            998776655554433

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.92  E-value=0.02  Score=56.76  Aligned_cols=72  Identities=17%  Similarity=0.148  Sum_probs=56.2

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||.| .+|.++|..|.++|  ..|+++....                            .++.+.++.||+||.
T Consensus       157 Gk~vvVvGrs~~VG~Pla~lL~~~g--AtVtv~hs~t----------------------------~~l~~~~~~ADIvV~  206 (285)
T PRK14191        157 GKDVVIIGASNIVGKPLAMLMLNAG--ASVSVCHILT----------------------------KDLSFYTQNADIVCV  206 (285)
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCC--CEEEEEeCCc----------------------------HHHHHHHHhCCEEEE
Confidence            6799999998 99999999999998  8999874322                            144566789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+   +  -..++++|++||++.
T Consensus       207 AvG~p~~---i--~~~~vk~GavVIDvG  229 (285)
T PRK14191        207 GVGKPDL---I--KASMVKKGAVVVDIG  229 (285)
T ss_pred             ecCCCCc---C--CHHHcCCCcEEEEee
Confidence            9985443   1  134568899999876

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.92  E-value=0.013  Score=56.91  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      ..||.|+|+|.+|+.+|..|++.|. -+++++|.+.-
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~v   59 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDTV   59 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCcc
Confidence            4789999999999999999999995 57888888753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.92  E-value=0.035  Score=57.31  Aligned_cols=35  Identities=20%  Similarity=0.397  Sum_probs=31.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus        41 ~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            4689999999999999999999994 4888998873

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=95.92  E-value=0.018  Score=60.46  Aligned_cols=79  Identities=24%  Similarity=0.316  Sum_probs=49.8

Q ss_pred             CeEEEECcchHHH-HHHHHHHhcC--C-CCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          128 NKVVVLGGGSFGT-AMAAHVANKK--S-QLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       128 ~kI~IIGaG~mG~-~iA~~La~aG--~-~~~V~v~~r~-~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |||+|||+|+.-+ .+...|+...  . .-+|+++|.+ +++++.+.+...  ++......+..+..++|.++++++||+
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~--~~~~~~~~~~~v~~t~d~~~al~gadf   78 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK--RMVKKAGLPIKVHLTTDRREALEGADF   78 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH--HHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            6999999999633 2333333321  1 2689999999 777654332110  000111112357889999999999999


Q ss_pred             EEEcCc
Q 012720          203 CLHAMP  208 (458)
Q Consensus       203 VilaVp  208 (458)
                      ||.+.-
T Consensus        79 Vi~~~~   84 (419)
T cd05296          79 VFTQIR   84 (419)
T ss_pred             EEEEEe
Confidence            999874

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.85  E-value=0.017  Score=58.17  Aligned_cols=80  Identities=18%  Similarity=0.285  Sum_probs=55.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ++||+|||+ |..|.-+.+.|.++. ..++.....+...         .            +   .+.++...++|++|+
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~---------~------------~---~~~~~~~~~~DvvFl   56 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRK---------D------------A---AARRELLNAADVAIL   56 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCC---------c------------c---cCchhhhcCCCEEEE
Confidence            579999995 999999999999875 2344333322210         0            0   122334568999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |+|.....++...+.+   .|..||+++.
T Consensus        57 alp~~~s~~~~~~~~~---~g~~VIDlSa   82 (313)
T PRK11863         57 CLPDDAAREAVALIDN---PATRVIDAST   82 (313)
T ss_pred             CCCHHHHHHHHHHHHh---CCCEEEECCh
Confidence            9998877776666543   5889999984

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.82  E-value=0.013  Score=54.02  Aligned_cols=78  Identities=15%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             CCeEEEECcchHHHHHHHHHH--hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La--~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      +-++.|||+|++|.+++.+=-  ++|  ++++ +||.+++.+      |....   +  +  .+.-.++++..++  +.|
T Consensus        84 ~tnviiVG~GnlG~All~Y~f~~~~~--~~iv~~FDv~~~~V------G~~~~---~--v--~V~~~d~le~~v~~~dv~  148 (211)
T COG2344          84 TTNVIIVGVGNLGRALLNYNFSKKNG--MKIVAAFDVDPDKV------GTKIG---D--V--PVYDLDDLEKFVKKNDVE  148 (211)
T ss_pred             ceeEEEEccChHHHHHhcCcchhhcC--ceEEEEecCCHHHh------CcccC---C--e--eeechHHHHHHHHhcCcc
Confidence            468999999999999987643  444  6665 689988743      21111   1  0  1222345555555  789


Q ss_pred             EEEEcCccccHHHHHHhh
Q 012720          202 YCLHAMPVQFSSSFLEGI  219 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i  219 (458)
                      +.|+|||+..-.++++.+
T Consensus       149 iaiLtVPa~~AQ~vad~L  166 (211)
T COG2344         149 IAILTVPAEHAQEVADRL  166 (211)
T ss_pred             EEEEEccHHHHHHHHHHH
Confidence            999999987666666554

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.78  E-value=0.042  Score=46.83  Aligned_cols=86  Identities=17%  Similarity=0.241  Sum_probs=54.6

Q ss_pred             CcchHHHHHHHHHHhcCC--CCeEE-EEeCC----HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCEEE
Q 012720          134 GGGSFGTAMAAHVANKKS--QLKVY-MLMRD----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL  204 (458)
Q Consensus       134 GaG~mG~~iA~~La~aG~--~~~V~-v~~r~----~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVi  204 (458)
                      |+|.||..++..|.+...  +.+|. +++|+    ........                ....++++++.+.  +.|+||
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~dvvV   64 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFP----------------DEAFTTDLEELIDDPDIDVVV   64 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHT----------------HSCEESSHHHHHTHTT-SEEE
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcc----------------cccccCCHHHHhcCcCCCEEE
Confidence            899999999999987630  15655 56777    11111111                1235668888877  899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      -|..+..+.+.+..+.   +.|..||+.++|...
T Consensus        65 E~t~~~~~~~~~~~~L---~~G~~VVt~nk~ala   95 (117)
T PF03447_consen   65 ECTSSEAVAEYYEKAL---ERGKHVVTANKGALA   95 (117)
T ss_dssp             E-SSCHHHHHHHHHHH---HTTCEEEES-HHHHH
T ss_pred             ECCCchHHHHHHHHHH---HCCCeEEEECHHHhh
Confidence            9988877777665544   468889998887544

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=95.78  E-value=0.045  Score=53.36  Aligned_cols=108  Identities=15%  Similarity=0.164  Sum_probs=68.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .-||.|+|.|.+|.+.|..+...|..-++.++|.++++++-   +-....+-..+.-.+++.+..|... .+++++||++
T Consensus        20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkG---E~MDLqH~s~f~~~~~V~~~~Dy~~-sa~S~lvIiT   95 (332)
T KOG1495|consen   20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKG---EMMDLQHGSAFLSTPNVVASKDYSV-SANSKLVIIT   95 (332)
T ss_pred             CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhh---hhhhhccccccccCCceEecCcccc-cCCCcEEEEe
Confidence            46899999999999999999888755688999998875431   1111111001111235666656643 5789999998


Q ss_pred             Ccccc------------HHHHHHhhhhc---CCCCCeEEEeccCCCc
Q 012720          207 MPVQF------------SSSFLEGISDY---VDPGLPFISLSKGLEL  238 (458)
Q Consensus       207 Vp~~~------------v~~vl~~i~~~---l~~~~ivV~~snGi~~  238 (458)
                      .-..+            --++++.+.|.   ..|+++++-.+|-++.
T Consensus        96 AGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDi  142 (332)
T KOG1495|consen   96 AGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDI  142 (332)
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHH
Confidence            86532            12233444332   3468888888876553

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=95.78  E-value=0.017  Score=60.30  Aligned_cols=81  Identities=27%  Similarity=0.319  Sum_probs=51.8

Q ss_pred             CCCeEEEECcchHHHHH--HHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          126 RTNKVVVLGGGSFGTAM--AAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~i--A~~La~aG-~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +++||+|||+|+.+.+-  ..-|.+.- + ..++.++|.++++.+.+...-  .++......+-.+..++|.++|+++||
T Consensus         2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~--~~~v~~~g~~~kv~~ttd~~eAl~gAd   79 (442)
T COG1486           2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILA--KKLVEEAGAPVKVEATTDRREALEGAD   79 (442)
T ss_pred             CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHH--HHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence            46799999999987642  22222221 1 258999999998766332110  001111122345788999999999999


Q ss_pred             EEEEcCc
Q 012720          202 YCLHAMP  208 (458)
Q Consensus       202 iVilaVp  208 (458)
                      +|+.+.-
T Consensus        80 fVi~~~r   86 (442)
T COG1486          80 FVITQIR   86 (442)
T ss_pred             EEEEEEe
Confidence            9999874

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.71  E-value=0.043  Score=51.61  Aligned_cols=35  Identities=11%  Similarity=0.235  Sum_probs=31.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||+|+|+|.+|+.++..|+.+|. ..++++|.+.
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            4689999999999999999999995 5799998774

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.70  E-value=0.029  Score=62.11  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=32.4

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +.+||+|||+|..|...|..|++.|  ++|++|++.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCC
Confidence            3689999999999999999999999  9999999876

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.69  E-value=0.031  Score=57.12  Aligned_cols=91  Identities=16%  Similarity=0.308  Sum_probs=58.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~---V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aD  201 (458)
                      .+||+|||+ |..|.-|.+.|.++. .++   +.++......       |.... +.+.    .+.+. .+.++ ..++|
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~-~f~v~~l~~~aS~~sa-------Gk~~~-~~~~----~l~v~~~~~~~-~~~~D   70 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKET-KFNIAEVTLLSSKRSA-------GKTVQ-FKGR----EIIIQEAKINS-FEGVD   70 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCC-CCCcccEEEEECcccC-------CCCee-eCCc----ceEEEeCCHHH-hcCCC
Confidence            479999997 999999999999533 155   5555543211       22211 1111    12221 24444 57899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ++|+|+|.....++...+..   .|..||+++.
T Consensus        71 ivf~a~~~~~s~~~~~~~~~---~G~~VID~Ss  100 (347)
T PRK06728         71 IAFFSAGGEVSRQFVNQAVS---SGAIVIDNTS  100 (347)
T ss_pred             EEEECCChHHHHHHHHHHHH---CCCEEEECch
Confidence            99999998877777666533   5889999984

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.68  E-value=0.055  Score=54.34  Aligned_cols=79  Identities=18%  Similarity=0.305  Sum_probs=54.6

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .||+|+|+ |..|.-+.+.|+++. ..++....-+..    +     .              . .+.++.++++|++|+|
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~----~-----~--------------~-~~~~~~~~~~D~vFla   56 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR----K-----D--------------A-AERAKLLNAADVAILC   56 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc----c-----C--------------c-CCHhHhhcCCCEEEEC
Confidence            48999996 999999999999875 234443322211    0     0              0 1344556789999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|.....+++..+.   ..|..||+++.
T Consensus        57 lp~~~s~~~~~~~~---~~g~~VIDlSa   81 (310)
T TIGR01851        57 LPDDAAREAVSLVD---NPNTCIIDAST   81 (310)
T ss_pred             CCHHHHHHHHHHHH---hCCCEEEECCh
Confidence            99887777666553   35888999983

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK08223 hypothetical protein; Validated

Probab=95.68  E-value=0.044  Score=54.45  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=31.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.++..|+++|. -+++++|.+.
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            4689999999999999999999995 4788888775

>PRK06153 hypothetical protein; Provisional

Probab=95.67  E-value=0.028  Score=57.87  Aligned_cols=101  Identities=19%  Similarity=0.330  Sum_probs=62.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH----------------------HHHHHHhhcCCCccCCCCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA----------------------VCQSINEKHCNCRYFPEQKLP  184 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~----------------------~~e~l~~~g~~~~~~~~~~l~  184 (458)
                      ..||+|||+|..|+.++..|++.|. -+++++|.+.=                      +++.+++.-..        ..
T Consensus       176 ~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~--------in  246 (393)
T PRK06153        176 GQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN--------MR  246 (393)
T ss_pred             hCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHH--------hC
Confidence            5799999999999999999999994 47888876631                      11112111000        01


Q ss_pred             CceEE-----eCCHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          185 ENVIA-----TTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       185 ~~i~a-----~~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      .++.+     ..+..+.+.++|+||.|+-....+.++.+....  .+..+|++..|+..
T Consensus       247 ~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~~l~~  303 (393)
T PRK06153        247 RGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGMGLEL  303 (393)
T ss_pred             CeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeeeccee
Confidence            11211     112123467899999999877777766554332  25667776655543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.65  E-value=0.073  Score=53.09  Aligned_cols=75  Identities=24%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHhhcCCCccCCCCCCCCceEEeC--C---HHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT--D---AKTALL  198 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~---~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~---~~ea~~  198 (458)
                      .+++.|||+|..+.+++..|+..|. .+|++++|++   ++++.+.+.- ...+      ...+...+  +   +.+.+.
T Consensus       124 ~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~-~~~~------~~~~~~~~~~~~~~l~~~~~  195 (288)
T PRK12749        124 GKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRV-NENT------DCVVTVTDLADQQAFAEALA  195 (288)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHh-hhcc------CceEEEechhhhhhhhhhcc
Confidence            4689999999999999999998883 5899999994   4666665431 1000      00111211  1   223456


Q ss_pred             CCCEEEEcCcc
Q 012720          199 GADYCLHAMPV  209 (458)
Q Consensus       199 ~aDiVilaVp~  209 (458)
                      ++|+||-|+|.
T Consensus       196 ~aDivINaTp~  206 (288)
T PRK12749        196 SADILTNGTKV  206 (288)
T ss_pred             cCCEEEECCCC
Confidence            89999999985

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.63  E-value=0.032  Score=57.78  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=30.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ..||.|+|+|.+|+.++..|++.|. -+++++|++
T Consensus       135 ~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        135 EARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            5689999999999999999999994 479999988

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=95.58  E-value=0.094  Score=55.59  Aligned_cols=92  Identities=16%  Similarity=0.233  Sum_probs=65.4

Q ss_pred             CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      ..++|+|||+    |.+|..+..+|.+.|+.-+|+.++...+.   +.                ++.+..+++++-...|
T Consensus         6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~---i~----------------G~~~~~sl~~lp~~~D   66 (447)
T TIGR02717         6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE---IL----------------GVKAYPSVLEIPDPVD   66 (447)
T ss_pred             CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc---cC----------------CccccCCHHHCCCCCC
Confidence            3578999999    88999999999998832267666655321   11                2344557777666789


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      ++++++|...+.++++++... .-. .+|.++.|+..
T Consensus        67 lavi~vp~~~~~~~l~e~~~~-gv~-~~vi~s~gf~e  101 (447)
T TIGR02717        67 LAVIVVPAKYVPQVVEECGEK-GVK-GAVVITAGFKE  101 (447)
T ss_pred             EEEEecCHHHHHHHHHHHHhc-CCC-EEEEECCCccc
Confidence            999999999999999887653 222 34446667754

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.57  E-value=0.016  Score=60.18  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+|.|||+|.+|.+.|..|+++|  ++|+++++..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            58999999999999999999999  9999999875

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.54  E-value=0.038  Score=53.40  Aligned_cols=40  Identities=25%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l  168 (458)
                      +|||.|+|+ |.+|..++..|++.|  ++|+++.|+.+.....
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~   57 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKG--FAVKAGVRDVDKAKTS   57 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC--CEEEEEecCHHHHHHh
Confidence            579999995 999999999999998  9999999998765443

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.49  E-value=0.069  Score=52.67  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..+|.|+|+|.+|+..|..|++.|. .+++++|.+.
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGI-GAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            4689999999999999999999995 5799998775

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.47  E-value=0.038  Score=54.62  Aligned_cols=72  Identities=26%  Similarity=0.327  Sum_probs=56.8

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||.+ ..|.++|..|...|  ..|+++.+...                            ++.+.+++||+||.
T Consensus       152 Gk~V~ViGrs~~vGrpla~lL~~~~--atVtv~hs~t~----------------------------~L~~~~~~ADIvI~  201 (279)
T PRK14178        152 GKRAVVVGRSIDVGRPMAALLLNAD--ATVTICHSKTE----------------------------NLKAELRQADILVS  201 (279)
T ss_pred             CCEEEEECCCccccHHHHHHHHhCC--CeeEEEecChh----------------------------HHHHHHhhCCEEEE
Confidence            5799999988 99999999999888  89998876542                            45567789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++...+   +.  ..++++|++||++.
T Consensus       202 Avgk~~l---v~--~~~vk~GavVIDVg  224 (279)
T PRK14178        202 AAGKAGF---IT--PDMVKPGATVIDVG  224 (279)
T ss_pred             CCCcccc---cC--HHHcCCCcEEEEee
Confidence            9974322   11  23468999999986

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=95.46  E-value=0.082  Score=53.71  Aligned_cols=81  Identities=17%  Similarity=0.154  Sum_probs=51.5

Q ss_pred             EEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHh-hcCCCcc-CCC--CCC-CCceEEeCCHHhhcCCCCEE
Q 012720          130 VVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINE-KHCNCRY-FPE--QKL-PENVIATTDAKTALLGADYC  203 (458)
Q Consensus       130 I~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~-~g~~~~~-~~~--~~l-~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |+|+|.|.+|...++.+.+.. +.+|.. .|.+++....+.. .+....+ .+.  ..+ ..++.+..++++.+.++|+|
T Consensus         1 VaInG~GrIGr~varav~~~~-d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV   79 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQD-DMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV   79 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCC-CcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence            689999999999999987653 367664 4666654444433 2221111 011  001 12355566788888999999


Q ss_pred             EEcCcccc
Q 012720          204 LHAMPVQF  211 (458)
Q Consensus       204 ilaVp~~~  211 (458)
                      +.|+|...
T Consensus        80 ve~Tp~~~   87 (333)
T TIGR01546        80 VDATPGGI   87 (333)
T ss_pred             EECCCCCC
Confidence            99999653

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.45  E-value=0.064  Score=50.46  Aligned_cols=35  Identities=17%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.++..|+.+|. .+++++|.+.
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            4689999999999999999999995 5799999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.41  E-value=0.039  Score=55.12  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=54.8

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---hhcCCCC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAK---TALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~---ea~~~aD  201 (458)
                      ..++|+|+|+|.+|+ ||-.++++ ++++|+++++.. ++-+.++..|.. .|         +..+.|.+   ++.+.-|
T Consensus       181 pG~~vgI~GlGGLGh-~aVq~AKA-MG~rV~vis~~~~kkeea~~~LGAd-~f---------v~~~~d~d~~~~~~~~~d  248 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGH-MAVQYAKA-MGMRVTVISTSSKKKEEAIKSLGAD-VF---------VDSTEDPDIMKAIMKTTD  248 (360)
T ss_pred             CCcEEEEecCcccch-HHHHHHHH-hCcEEEEEeCCchhHHHHHHhcCcc-ee---------EEecCCHHHHHHHHHhhc
Confidence            468999999999888 78888877 349999999997 444455544422 11         12222332   2233457


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      .++-++.+. .+..++.+..+++.+-.+|.+
T Consensus       249 g~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~v  278 (360)
T KOG0023|consen  249 GGIDTVSNL-AEHALEPLLGLLKVNGTLVLV  278 (360)
T ss_pred             Ccceeeeec-cccchHHHHHHhhcCCEEEEE
Confidence            777777643 222233344455544444433

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.40  E-value=0.083  Score=56.64  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=48.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|.|+|+|..|.+.+..|...|  ++|+++|+.++..+.+.+.|..            +.......+.+.++|+||.+
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~~~~l~~~g~~------------~~~~~~~~~~l~~~D~VV~S   77 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDALRPHAERGVA------------TVSTSDAVQQIADYALVVTS   77 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHhCCCE------------EEcCcchHhHhhcCCEEEEC
Confidence            468999999999999999999998  9999999877655555443321            11111222346788999987


Q ss_pred             Cc
Q 012720          207 MP  208 (458)
Q Consensus       207 Vp  208 (458)
                      -.
T Consensus        78 pG   79 (488)
T PRK03369         78 PG   79 (488)
T ss_pred             CC
Confidence            54

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.39  E-value=0.076  Score=56.39  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      .+||+|+|+|.-|.++|..|.+.|  ++|+++|+++.     ..+.+.+.|..            +..-....+.+.++|
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~------------~~~~~~~~~~~~~~d   79 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVK------------LVLGENYLDKLDGFD   79 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCE------------EEeCCCChHHhccCC
Confidence            468999999999999999999999  99999997642     12345444421            111112223357899


Q ss_pred             EEEEc
Q 012720          202 YCLHA  206 (458)
Q Consensus       202 iVila  206 (458)
                      +||.+
T Consensus        80 lVV~S   84 (458)
T PRK01710         80 VIFKT   84 (458)
T ss_pred             EEEEC
Confidence            99987

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.39  E-value=0.097  Score=53.88  Aligned_cols=93  Identities=13%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCe---EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK---VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~---V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |++|+|||+ |.+|.-|-++|.++. ++.   +.+++....        +.....+.+...  .+....+.++ +.++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~-~f~~~~l~~~ss~~s--------g~~~~~f~g~~~--~v~~~~~~~~-~~~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEEN-DFDLIEPVFFSTSQA--------GGAAPSFGGKEG--TLQDAFDIDA-LKKLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCC-CCCcCcEEEecchhh--------CCcccccCCCcc--eEEecCChhH-hcCCCE
Confidence            479999997 999999998555443 144   555544321        111111222111  1222223444 578999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCC--CeEEEecc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPG--LPFISLSK  234 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~--~ivV~~sn  234 (458)
                      +|+|+|.....++...+..   .|  .+||+.+.
T Consensus        69 vf~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss   99 (369)
T PRK06598         69 IITCQGGDYTNEVYPKLRA---AGWQGYWIDAAS   99 (369)
T ss_pred             EEECCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence            9999998877777766544   46  56898884

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.38  E-value=0.033  Score=52.09  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=59.8

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+.|  ..|++++.+....  ..+.+. .++.   ..+. -....++.+.++.||+||.
T Consensus        62 GK~vvVIGrS~iVGkPla~lL~~~~--AtVti~~~~~~~~--~~~~~~-~~hs---~t~~-~~~~~~l~~~~~~ADIVIs  132 (197)
T cd01079          62 GKTITIINRSEVVGRPLAALLANDG--ARVYSVDINGIQV--FTRGES-IRHE---KHHV-TDEEAMTLDCLSQSDVVIT  132 (197)
T ss_pred             CCEEEEECCCccchHHHHHHHHHCC--CEEEEEecCcccc--cccccc-cccc---cccc-cchhhHHHHHhhhCCEEEE
Confidence            67999999 4788999999999998  9999997654211  111000 0000   0000 0000125677899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++.....  +  =...+++|++||++.
T Consensus       133 AvG~~~~~--i--~~d~ik~GavVIDVG  156 (197)
T cd01079         133 GVPSPNYK--V--PTELLKDGAICINFA  156 (197)
T ss_pred             ccCCCCCc--c--CHHHcCCCcEEEEcC
Confidence            99965431  1  035678899999975

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.36  E-value=0.037  Score=56.14  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSI  168 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l  168 (458)
                      ||||.|.|+ |.+|+.++..|.++ |  ++|++++|+.+....+
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~--~~V~~~~r~~~~~~~~   42 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTD--WEVYGMDMQTDRLGDL   42 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCC--CeEEEEeCcHHHHHHh
Confidence            478999997 99999999999876 5  8999999977544433

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.36  E-value=0.053  Score=55.74  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.++..|+..|. -+++++|.+.
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDT   62 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            4799999999999999999999995 4788888775

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.36  E-value=0.016  Score=58.84  Aligned_cols=107  Identities=10%  Similarity=0.115  Sum_probs=58.5

Q ss_pred             CeEEEECcchHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHHHHhhcCCCcc----CCCCCCC-CceEEeCCHHh
Q 012720          128 NKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQSINEKHCNCRY----FPEQKLP-ENVIATTDAKT  195 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~a------G~~~~V~-v~~r~~~~~e~l~~~g~~~~~----~~~~~l~-~~i~a~~~~~e  195 (458)
                      |||+|||.|++|..++..|.+.      |.+.+|+ +.+++...   +...|++...    .....+. .... ..+.++
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l---~~~~Gldl~~l~~~~~~g~l~~~~~~-~~~~~~   76 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSY---YNERGLDIGKIISYKEKGRLEEIDYE-KIKFDE   76 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcc---cCCcCCChHHHHHHHhcCccccCCCC-cCCHHH
Confidence            5899999999999999999873      3235544 45655321   1112221100    0000000 0000 013444


Q ss_pred             hc-CCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          196 AL-LGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       196 a~-~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      .+ .++|++|-|+++.. -.....-+.+.++.|..||...||...
T Consensus        77 ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA  121 (326)
T PRK06392         77 IFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA  121 (326)
T ss_pred             HhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH
Confidence            32 47899999998521 112233445566778899988887543

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.33  E-value=0.16  Score=51.22  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=63.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcC-CCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC--CE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA--DY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG-~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a--Di  202 (458)
                      .-|+||+|+|.|+.-+++.|.-.- .+|.|+ +.+|+.+.+.++.+.+.         +| +.++..+.++.+++.  |+
T Consensus         6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~---------~~-~~k~y~syEeLakd~~vDv   75 (351)
T KOG2741|consen    6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHN---------IP-NPKAYGSYEELAKDPEVDV   75 (351)
T ss_pred             eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcC---------CC-CCccccCHHHHhcCCCcCE
Confidence            358999999999999999997432 137766 67898888888876542         22 345677888887755  99


Q ss_pred             EEEcCccccHHHHHHhhhh
Q 012720          203 CLHAMPVQFSSSFLEGISD  221 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~  221 (458)
                      |.+++|..+..+++-.++.
T Consensus        76 Vyi~~~~~qH~evv~l~l~   94 (351)
T KOG2741|consen   76 VYISTPNPQHYEVVMLALN   94 (351)
T ss_pred             EEeCCCCccHHHHHHHHHH
Confidence            9999998887777755544

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.32  E-value=0.032  Score=44.14  Aligned_cols=33  Identities=33%  Similarity=0.547  Sum_probs=30.6

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      ||.|||+|..|.-+|..|++.|  .+|+++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccch
Confidence            6899999999999999999999  99999998763

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.31  E-value=0.084  Score=52.51  Aligned_cols=76  Identities=21%  Similarity=0.297  Sum_probs=52.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiVi  204 (458)
                      .+++.|+|+|..|.+++..|++.|. .+|++++|+.++++++.+.- +..+ +..    .+...+  +..+.+..+|+||
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~-~~~~-~~~----~~~~~~~~~~~~~~~~~divI  199 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVI-NNAV-GRE----AVVGVDARGIEDVIAAADGVV  199 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHH-hhcc-Ccc----eEEecCHhHHHHHHhhcCEEE
Confidence            4689999999999999999999883 47999999999988886541 1000 000    011111  1123346789999


Q ss_pred             EcCcc
Q 012720          205 HAMPV  209 (458)
Q Consensus       205 laVp~  209 (458)
                      =|+|.
T Consensus       200 NaTp~  204 (283)
T PRK14027        200 NATPM  204 (283)
T ss_pred             EcCCC
Confidence            99884

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.30  E-value=0.046  Score=54.23  Aligned_cols=72  Identities=25%  Similarity=0.298  Sum_probs=55.9

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++++|||-|. +|.++|..|.+.|  ..|+++....                            .++.+.+++||+||.
T Consensus       164 Gk~vvViGrs~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvv~  213 (287)
T PRK14176        164 GKNAVIVGHSNVVGKPMAAMLLNRN--ATVSVCHVFT----------------------------DDLKKYTLDADILVV  213 (287)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHCC--CEEEEEeccC----------------------------CCHHHHHhhCCEEEE
Confidence            67999999988 9999999999988  8999887422                            155666789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-...   +  -..++++|++||++.
T Consensus       214 AvG~p~~---i--~~~~vk~gavVIDvG  236 (287)
T PRK14176        214 ATGVKHL---I--KADMVKEGAVIFDVG  236 (287)
T ss_pred             ccCCccc---c--CHHHcCCCcEEEEec
Confidence            7764321   1  134678899999875

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.24  E-value=0.05  Score=60.48  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=32.2

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +.+||+|||+|..|...|..|++.|  ++|+++++.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC
Confidence            4679999999999999999999999  9999999864

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.23  E-value=0.06  Score=53.19  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHh---hcCCCCEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKT---ALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~e---a~~~aDiV  203 (458)
                      .||+|||.|.+-...-....+.|.+..|..+|++++..+..++-- .    ....+..++.+ +.|..+   -++++|+|
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv-~----~~~~L~~~m~f~~~d~~~~~~dl~~~DvV  196 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLV-A----SDLGLSKRMSFITADVLDVTYDLKEYDVV  196 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHH-H-------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-h----hcccccCCeEEEecchhccccccccCCEE
Confidence            489999999998864444444442257889999998655433210 0    00011122333 223322   25689999


Q ss_pred             EEcCccc----cHHHHHHhhhhcCCCCCeEEEe-ccCC
Q 012720          204 LHAMPVQ----FSSSFLEGISDYVDPGLPFISL-SKGL  236 (458)
Q Consensus       204 ilaVp~~----~v~~vl~~i~~~l~~~~ivV~~-snGi  236 (458)
                      +++--..    ...++++.+.+++++|+.|+.= .+|+
T Consensus       197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl  234 (276)
T PF03059_consen  197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL  234 (276)
T ss_dssp             EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GG
T ss_pred             EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhh
Confidence            9987755    7899999999999999977653 4443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.23  E-value=0.04  Score=53.62  Aligned_cols=35  Identities=23%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||+|||+|.+|+.++..|++.|. .+++++|.+.
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            4799999999999999999999995 4788888764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.19  E-value=0.079  Score=56.51  Aligned_cols=34  Identities=26%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|||+|..|..+|..|++.|  ++|+++++.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence            468999999999999999999999  9999999654

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.17  E-value=0.11  Score=52.44  Aligned_cols=94  Identities=18%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCC--CCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPE--QKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~-V~v~~r~~~~~e~l~~~g~~~~~~~~--~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ++||+|+|+ |.+|..|...|.+..+.++ +.++...+..       |.....+.+  ...+..+   .+.. ..+++|+
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSa-------G~~~~~f~~~~~~v~~~~---~~~~-~~~~~Di   69 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSA-------GKKYIEFGGKSIGVPEDA---ADEF-VFSDVDI   69 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccccc-------CCccccccCccccCcccc---cccc-ccccCCE
Confidence            479999996 9999999999999654444 4555544322       221011111  1111111   1222 2568999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|.|.+....+++...+.+   .|.+||+.+.
T Consensus        70 vf~~ag~~~s~~~~p~~~~---~G~~VIdnsS   98 (334)
T COG0136          70 VFFAAGGSVSKEVEPKAAE---AGCVVIDNSS   98 (334)
T ss_pred             EEEeCchHHHHHHHHHHHH---cCCEEEeCCc
Confidence            9999998777777766654   5788988774

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.13  E-value=0.073  Score=56.81  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=33.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ  166 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e  166 (458)
                      ++||.|+|+|..|.++|..|.+.|  ++|+++|++.....
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~   52 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELG--CDVVVADDNETARH   52 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCC--CEEEEECCChHHHH
Confidence            568999999999999999999999  89999998765443

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.13  E-value=0.057  Score=53.59  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+.+  ..|+++....                            .++.+.++.||+||.
T Consensus       158 Gk~vvViGrS~iVG~Pla~lL~~~~--atVt~chs~t----------------------------~~l~~~~~~ADIvI~  207 (284)
T PRK14190        158 GKHVVVVGRSNIVGKPVGQLLLNEN--ATVTYCHSKT----------------------------KNLAELTKQADILIV  207 (284)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCC--CEEEEEeCCc----------------------------hhHHHHHHhCCEEEE
Confidence            67999999 5889999999999988  8999875322                            156677899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+   +.  ..++++|++||++.
T Consensus       208 AvG~p~~---i~--~~~ik~gavVIDvG  230 (284)
T PRK14190        208 AVGKPKL---IT--ADMVKEGAVVIDVG  230 (284)
T ss_pred             ecCCCCc---CC--HHHcCCCCEEEEee
Confidence            9985542   11  35668899999875

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.13  E-value=0.099  Score=53.55  Aligned_cols=95  Identities=21%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-CCCccCCCCCCCCceEEeCCHHhhc--CCCCEEEE
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-CNCRYFPEQKLPENVIATTDAKTAL--LGADYCLH  205 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-~~~~~~~~~~l~~~i~a~~~~~ea~--~~aDiVil  205 (458)
                      ++.|+|+|.+|...+..+...|. .+|++.|+++++++..++.+ ......+...     .......+..  .++|++|.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-----~~~~~~~~~t~g~g~D~vie  244 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGADVVVNPSED-----DAGAEILELTGGRGADVVIE  244 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCeEeecCccc-----cHHHHHHHHhCCCCCCEEEE
Confidence            79999999999988777776673 68888899999888776633 2111110000     0000011222  35999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |+...   ..+.+....++++-.++.+
T Consensus       245 ~~G~~---~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         245 AVGSP---PALDQALEALRPGGTVVVV  268 (350)
T ss_pred             CCCCH---HHHHHHHHHhcCCCEEEEE
Confidence            99933   3444555555555554433

>PRK08163 salicylate hydroxylase; Provisional

Probab=95.12  E-value=0.025  Score=58.40  Aligned_cols=38  Identities=29%  Similarity=0.476  Sum_probs=33.5

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |+..++|.|||+|..|.++|..|+++|  ++|++++|.++
T Consensus         1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~   38 (396)
T PRK08163          1 MTKVTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAE   38 (396)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCcc
Confidence            334578999999999999999999999  99999998753

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.10  E-value=0.22  Score=49.74  Aligned_cols=102  Identities=14%  Similarity=0.149  Sum_probs=67.0

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCe-EEEEeCC--HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLK-VYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--  199 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~-V~v~~r~--~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--  199 (458)
                      +..||.|.|. |.+|..+..+|.+.|  ++ |..+++.  .+.   +                .++.+..+++|+-+.  
T Consensus         7 ~~~~~~v~~~~~~~g~~~l~~l~~~g--~~~v~pVnp~~~~~~---v----------------~G~~~y~sv~dlp~~~~   65 (291)
T PRK05678          7 KDTKVIVQGITGKQGTFHTEQMLAYG--TNIVGGVTPGKGGTT---V----------------LGLPVFNTVAEAVEATG   65 (291)
T ss_pred             CCCeEEEeCCCchHHHHHHHHHHHCC--CCEEEEECCCCCCCe---E----------------eCeeccCCHHHHhhccC
Confidence            3568999996 999999999999887  55 3344544  211   1                134556688886555  


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~  250 (458)
                      .|+.+++||...+.++++++... .- ..+|.++.|+..+..+.+.+..++
T Consensus        66 ~DlAvi~vp~~~v~~~l~e~~~~-gv-k~avI~s~Gf~~~~~~~l~~~a~~  114 (291)
T PRK05678         66 ANASVIYVPPPFAADAILEAIDA-GI-DLIVCITEGIPVLDMLEVKAYLER  114 (291)
T ss_pred             CCEEEEEcCHHHHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHH
Confidence            89999999999999999887652 11 233445668764322234444433

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.07  E-value=0.11  Score=43.67  Aligned_cols=84  Identities=15%  Similarity=-0.001  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccccHHH-HH
Q 012720          138 FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSS-FL  216 (458)
Q Consensus       138 mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~v~~-vl  216 (458)
                      -+..++..|.+.|  .+|.++|..-....... .+.          ..++...++++++++++|+||++++...... -.
T Consensus        18 p~~~l~~~L~~~g--~~V~~~DP~v~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~   84 (106)
T PF03720_consen   18 PALELIEELKERG--AEVSVYDPYVDEEEIKE-LGK----------LEGVEVCDDLEEALKGADAVVLATDHDEFRELDW   84 (106)
T ss_dssp             HHHHHHHHHHHTT---EEEEE-TTSHHHHHHH-HCH----------HHCEEEESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred             HHHHHHHHHHHCC--CEEEEECCccChHHHHh-hCC----------ccceEEecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence            4567899999999  99999998754332222 110          0135677789999999999999999766554 34


Q ss_pred             HhhhhcCCCCCeEEEecc
Q 012720          217 EGISDYVDPGLPFISLSK  234 (458)
Q Consensus       217 ~~i~~~l~~~~ivV~~sn  234 (458)
                      +++...+.++.+|+++-+
T Consensus        85 ~~~~~~~~~~~~iiD~~~  102 (106)
T PF03720_consen   85 EEIAKLMRKPPVIIDGRN  102 (106)
T ss_dssp             HHHHHHSCSSEEEEESSS
T ss_pred             HHHHHhcCCCCEEEECcc
Confidence            556666767888888764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.06  E-value=0.029  Score=58.25  Aligned_cols=34  Identities=35%  Similarity=0.491  Sum_probs=31.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |+|+|||+|.+|+..|..|+++|  ++|+++++...
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence            58999999999999999999999  99999999753

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=95.06  E-value=0.041  Score=58.37  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .++|+|||+|.-|.+.|..|+++|  |+|+++.+.+.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~  157 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVAL  157 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCC
Confidence            489999999999999999999999  99999988763

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.04  E-value=0.089  Score=52.03  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      +++.|+|+|..+.+++..|++.|. .+|++++|+.++++.+.+.- ..            ....+..  ...+|+||-|+
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~~a~~la~~~-~~------------~~~~~~~--~~~~dlvINaT  186 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGF-TDGTIVARNEKTGKALAELY-GY------------EWRPDLG--GIEADILVNVT  186 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHh-CC------------cchhhcc--cccCCEEEECC
Confidence            589999999999999999999882 36999999999888887631 10            0000111  24589999999


Q ss_pred             cc
Q 012720          208 PV  209 (458)
Q Consensus       208 p~  209 (458)
                      |.
T Consensus       187 p~  188 (272)
T PRK12550        187 PI  188 (272)
T ss_pred             cc
Confidence            84

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.04  E-value=0.036  Score=48.54  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=30.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||+|+|+|.+|+.+|..|++.|. -+++++|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            4689999999999999999999994 4799999875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.03  E-value=0.053  Score=53.66  Aligned_cols=72  Identities=24%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||-+ .+|.++|..|.++|  ..|+++....                            .++.+.++.||+||.
T Consensus       157 Gk~vvViGrS~~VG~Pla~lL~~~~--AtVti~hs~T----------------------------~~l~~~~~~ADIvV~  206 (281)
T PRK14183        157 GKDVCVVGASNIVGKPMAALLLNAN--ATVDICHIFT----------------------------KDLKAHTKKADIVIV  206 (281)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------cCHHHHHhhCCEEEE
Confidence            6799999987 99999999999988  8998764321                            145667889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-..+   +  -..++++|++||++.
T Consensus       207 AvGkp~~---i--~~~~vk~gavvIDvG  229 (281)
T PRK14183        207 GVGKPNL---I--TEDMVKEGAIVIDIG  229 (281)
T ss_pred             ecCcccc---c--CHHHcCCCcEEEEee
Confidence            9985432   1  135678899999875

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=95.02  E-value=0.068  Score=54.36  Aligned_cols=36  Identities=8%  Similarity=0.142  Sum_probs=32.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .+||.|||+|-||...+..|.++|. .+|++.+|+.+
T Consensus       174 ~k~vLvIGaGem~~l~a~~L~~~g~-~~i~v~nRt~~  209 (338)
T PRK00676        174 KASLLFIGYSEINRKVAYYLQRQGY-SRITFCSRQQL  209 (338)
T ss_pred             CCEEEEEcccHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence            4799999999999999999999983 47999999974

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.99  E-value=0.076  Score=56.60  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=31.8

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +.+||+|||+|..|...|..|++.|  ++|+++++.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCC
Confidence            3579999999999999999999999  9999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.98  E-value=0.057  Score=53.65  Aligned_cols=72  Identities=21%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++.++.||+||.
T Consensus       155 Gk~vvViGrS~iVGkPla~lL~~~~--aTVtichs~T----------------------------~~l~~~~~~ADIvIs  204 (287)
T PRK14173        155 GKEVVVVGRSNIVGKPLAALLLRED--ATVTLAHSKT----------------------------QDLPAVTRRADVLVV  204 (287)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            57999999 5789999999999888  8999775432                            156677889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+-     -..++++|++||++.
T Consensus       205 AvGkp~~i-----~~~~vk~GavVIDVG  227 (287)
T PRK14173        205 AVGRPHLI-----TPEMVRPGAVVVDVG  227 (287)
T ss_pred             ecCCcCcc-----CHHHcCCCCEEEEcc
Confidence            99854321     145678999999875

>PRK06847 hypothetical protein; Provisional

Probab=94.94  E-value=0.029  Score=57.38  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=33.7

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |.++++|+|||+|.-|.++|..|++.|  ++|+++++.++
T Consensus         1 m~~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~   38 (375)
T PRK06847          1 MAAVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE   38 (375)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence            445678999999999999999999999  99999998753

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=0.8  Score=43.87  Aligned_cols=93  Identities=17%  Similarity=0.156  Sum_probs=54.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.++|||.|..|.+...+..+.+  +... +..|++++++.+.+...         .| ..    |.+...+-.+++|+
T Consensus        10 ~v~~~~vgtgrl~ra~~~ra~h~~--~~cs~i~srS~~~a~~LaE~~~---------a~-p~----d~~~~ael~~~vfv   73 (289)
T COG5495          10 RVVVGIVGTGRLGRAALLRADHVV--VACSAISSRSRDRAQNLAETYV---------AP-PL----DVAKSAELLLLVFV   73 (289)
T ss_pred             eeEEEEeecchHHHHHHHHhcchh--eeehhhhhcCHHHHhhchhccC---------CC-cc----chhhChhhhceEEe
Confidence            478999999999998555554444  3433 33577776665544211         00 01    22222234578888


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      -+|......+...  ....+|++|+.|+ |...
T Consensus        74 ~vpd~~~s~vaa~--~~~rpg~iv~HcS-ga~~  103 (289)
T COG5495          74 DVPDALYSGVAAT--SLNRPGTIVAHCS-GANG  103 (289)
T ss_pred             cchHHHHHHHHHh--cccCCCeEEEEcc-CCCc
Confidence            8887644443322  2345899999998 5543

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=94.81  E-value=0.068  Score=54.12  Aligned_cols=94  Identities=17%  Similarity=0.120  Sum_probs=66.7

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      .+++|...+++.|.|.|-.|..+|.+|...|  .+|+++..++-.+-+..=.|              .++. ..+++.+.
T Consensus       202 aTn~liaGK~vVV~GYG~vGrG~A~~~rg~G--A~ViVtEvDPI~AleA~MdG--------------f~V~-~m~~Aa~~  264 (420)
T COG0499         202 ATNVLLAGKNVVVAGYGWVGRGIAMRLRGMG--ARVIVTEVDPIRALEAAMDG--------------FRVM-TMEEAAKT  264 (420)
T ss_pred             hhceeecCceEEEecccccchHHHHHhhcCC--CeEEEEecCchHHHHHhhcC--------------cEEE-EhHHhhhc
Confidence            4677777899999999999999999999888  99999999875432222223              2333 46778899


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +|++|.|+-...+..  .+-...++++.++.+.
T Consensus       265 gDifiT~TGnkdVi~--~eh~~~MkDgaIl~N~  295 (420)
T COG0499         265 GDIFVTATGNKDVIR--KEHFEKMKDGAILANA  295 (420)
T ss_pred             CCEEEEccCCcCccC--HHHHHhccCCeEEecc
Confidence            999999998655321  1223446777666543

>PRK06180 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.23  Score=48.61  Aligned_cols=44  Identities=18%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +.+++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.+
T Consensus         2 ~~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~l~~   46 (277)
T PRK06180          2 SSMKTWLITGVSSGFGRALAQAALAAG--HRVVGTVRSEAARADFEA   46 (277)
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHhCc--CEEEEEeCCHHHHHHHHh
Confidence            34578999996 999999999999999  999999999877665544

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.77  E-value=0.069  Score=53.29  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=56.1

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+.|  ..|+++....                            .++++.+++||+||.
T Consensus       158 Gk~vvVIGrS~iVGkPla~lL~~~~--atVtv~hs~T----------------------------~~l~~~~~~ADIvIs  207 (297)
T PRK14186        158 GKKAVVVGRSILVGKPLALMLLAAN--ATVTIAHSRT----------------------------QDLASITREADILVA  207 (297)
T ss_pred             CCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            57999999 5789999999999988  8998874321                            156677889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-..+   +.  ..++++|++||++.
T Consensus       208 AvGkp~~---i~--~~~ik~gavVIDvG  230 (297)
T PRK14186        208 AAGRPNL---IG--AEMVKPGAVVVDVG  230 (297)
T ss_pred             ccCCcCc---cC--HHHcCCCCEEEEec
Confidence            9985432   11  35678899999875

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.77  E-value=0.19  Score=56.10  Aligned_cols=108  Identities=15%  Similarity=0.138  Sum_probs=68.4

Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC---CCCEEEEECcc-----cHH-HHhc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP---RQPFIALSGPS-----FAL-ELMN  273 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~---~~~~~vl~gP~-----~a~-ei~~  273 (458)
                      ||+|+|...+.++++++.++++++++|.++.. +=    ..+.+.+.+.++..   +++...+.|+.     .+. +..+
T Consensus         1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~S-vK----~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~   75 (673)
T PRK11861          1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGS-TK----SDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYV   75 (673)
T ss_pred             CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCc-cc----HHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhC
Confidence            68999999999999999999999999998862 21    22333444443321   11111233332     222 3345


Q ss_pred             cCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHH
Q 012720          274 KLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTGVEIA  315 (458)
Q Consensus       274 g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~  315 (458)
                      |....++... .+.+.++.+++++...|.++...+.-..++..
T Consensus        76 ~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~  118 (673)
T PRK11861         76 GRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVF  118 (673)
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHH
Confidence            5554443332 35778899999999999888877655555543

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.76  E-value=0.07  Score=52.86  Aligned_cols=72  Identities=24%  Similarity=0.331  Sum_probs=55.9

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+.|  ..|+++....                            .++.+.++.||+||.
T Consensus       156 Gk~vvViGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI~  205 (282)
T PRK14169        156 GKRVVIVGRSNIVGRPLAGLMVNHD--ATVTIAHSKT----------------------------RNLKQLTKEADILVV  205 (282)
T ss_pred             CCEEEEECCCccchHHHHHHHHHCC--CEEEEECCCC----------------------------CCHHHHHhhCCEEEE
Confidence            57999999 5789999999999988  8999874321                            156667789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-..+   +.  ..++++|++||++.
T Consensus       206 AvG~p~~---i~--~~~vk~GavVIDvG  228 (282)
T PRK14169        206 AVGVPHF---IG--ADAVKPGAVVIDVG  228 (282)
T ss_pred             ccCCcCc---cC--HHHcCCCcEEEEee
Confidence            9985443   11  35678899999875

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=94.75  E-value=0.2  Score=49.92  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CC
Q 012720          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD  201 (458)
Q Consensus       126 ~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD  201 (458)
                      +..||.|.| .|.+|..+-.+|...|  ++ .++..++.+ .+.+                .++.+..+.+|+-+.  .|
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~g--~~-~v~~V~p~~~~~~v----------------~G~~~y~sv~dlp~~~~~D   65 (286)
T TIGR01019         5 KDTKVIVQGITGSQGSFHTEQMLAYG--TN-IVGGVTPGKGGTTV----------------LGLPVFDSVKEAVEETGAN   65 (286)
T ss_pred             CCCcEEEecCCcHHHHHHHHHHHhCC--CC-EEEEECCCCCccee----------------cCeeccCCHHHHhhccCCC
Confidence            456899999 5999999999999888  66 555554421 0111                134566678776554  79


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      ++++++|...+.++++++... .-+ .+|-++.|+..
T Consensus        66 lavi~vpa~~v~~~l~e~~~~-Gvk-~avIis~Gf~e  100 (286)
T TIGR01019        66 ASVIFVPAPFAADAIFEAIDA-GIE-LIVCITEGIPV  100 (286)
T ss_pred             EEEEecCHHHHHHHHHHHHHC-CCC-EEEEECCCCCH
Confidence            999999999999999887652 112 34446668754

ATP citrate lyases appear to form an outgroup.

>PLN02427 UDP-apiose/xylose synthase

Probab=94.74  E-value=0.055  Score=55.85  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=48.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .|||.|.|+ |-+|+.++..|.++ |  ++|++++|+.+..+.+...+.. ...+..++ ..++.-..+..++++++|+|
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g--~~V~~l~r~~~~~~~l~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V   90 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETP--HKVLALDVYNDKIKHLLEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMADLT   90 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCC--CEEEEEecCchhhhhhhccccc-cCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence            579999995 99999999999987 5  8999999887665544332110 00000100 00111011334567789999


Q ss_pred             EEcC
Q 012720          204 LHAM  207 (458)
Q Consensus       204 ilaV  207 (458)
                      |.+.
T Consensus        91 iHlA   94 (386)
T PLN02427         91 INLA   94 (386)
T ss_pred             EEcc
Confidence            9876

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.72  E-value=0.074  Score=52.58  Aligned_cols=72  Identities=22%  Similarity=0.267  Sum_probs=56.4

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++++||| ...+|.++|..|.++|  ..|+++....                            .++.+..++||+||.
T Consensus       158 Gk~vvViGrS~~VGkPla~lL~~~~--AtVt~chs~T----------------------------~~l~~~~~~ADIvIs  207 (278)
T PRK14172        158 GKEVVVIGRSNIVGKPVAQLLLNEN--ATVTICHSKT----------------------------KNLKEVCKKADILVV  207 (278)
T ss_pred             CCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            67999999 5789999999999988  8999886431                            156677789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+   +  -..++++|++||++.
T Consensus       208 AvGkp~~---i--~~~~ik~gavVIDvG  230 (278)
T PRK14172        208 AIGRPKF---I--DEEYVKEGAIVIDVG  230 (278)
T ss_pred             cCCCcCc---c--CHHHcCCCcEEEEee
Confidence            9985443   1  135678899999874

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.69  E-value=0.21  Score=47.76  Aligned_cols=43  Identities=19%  Similarity=0.256  Sum_probs=36.7

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ..++|.|.|+ |.+|..++..|+++|  ++|.+++|+++..+.+..
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~   46 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEG--AKVVIADLNDEAAAAAAE   46 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence            4578999994 999999999999999  999999999877665543

>PRK07454 short chain dehydrogenase; Provisional

Probab=94.67  E-value=0.24  Score=47.10  Aligned_cols=42  Identities=14%  Similarity=0.291  Sum_probs=35.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++++.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.+
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   48 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAG--WDLALVARSQDALEALAA   48 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            567999996 999999999999999  899999999876655543

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=94.66  E-value=0.069  Score=53.84  Aligned_cols=78  Identities=18%  Similarity=0.267  Sum_probs=52.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH---HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV---CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~---~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      +|+|+|-|+ |.+|+.+...|.++|  |.|....|+++.   .+.+.+......-+  .-+...+.-..+.++++.+||.
T Consensus         6 ~~~VcVTGAsGfIgswivk~LL~rG--Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l--~l~~aDL~d~~sf~~ai~gcdg   81 (327)
T KOG1502|consen    6 GKKVCVTGASGFIGSWIVKLLLSRG--YTVRGTVRDPEDEKKTEHLRKLEGAKERL--KLFKADLLDEGSFDKAIDGCDG   81 (327)
T ss_pred             CcEEEEeCCchHHHHHHHHHHHhCC--CEEEEEEcCcchhhhHHHHHhcccCcccc--eEEeccccccchHHHHHhCCCE
Confidence            589999996 999999999999999  999999999865   22333321100000  0011223334567788999999


Q ss_pred             EEEcCc
Q 012720          203 CLHAMP  208 (458)
Q Consensus       203 VilaVp  208 (458)
                      ||.+-.
T Consensus        82 VfH~As   87 (327)
T KOG1502|consen   82 VFHTAS   87 (327)
T ss_pred             EEEeCc
Confidence            998543

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.65  E-value=0.094  Score=55.69  Aligned_cols=66  Identities=21%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             CCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .++|.|||+|..|.+ +|+.|.+.|  ++|+++|.... ..+.+.+.|...            ..-.+. +.+.++|+||
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~~~~~-~~~~~~d~vv   71 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESAVTQRLLELGAII------------FIGHDA-ENIKDADVVV   71 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCChHHHHHHHCCCEE------------eCCCCH-HHCCCCCEEE
Confidence            468999999999999 799999999  99999997643 233454433211            001122 3456799998


Q ss_pred             EcC
Q 012720          205 HAM  207 (458)
Q Consensus       205 laV  207 (458)
                      ++-
T Consensus        72 ~sp   74 (461)
T PRK00421         72 YSS   74 (461)
T ss_pred             ECC
Confidence            864

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.64  E-value=0.21  Score=47.15  Aligned_cols=41  Identities=20%  Similarity=0.318  Sum_probs=35.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      +++|.|.|+ |.+|..++..|+++|  ++|++++|+++..+.+.
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~   46 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADG--AKVVIYDSNEEAAEALA   46 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChhHHHHHH
Confidence            468999996 999999999999999  99999999987655443

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.63  E-value=0.17  Score=53.25  Aligned_cols=34  Identities=29%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|+|+|.+|.++|..|++.|  ++|+++|++.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCC
Confidence            468999999999999999999999  9999999764

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.63  E-value=0.079  Score=52.52  Aligned_cols=72  Identities=17%  Similarity=0.235  Sum_probs=56.8

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+.+  ..|+++....                            .++++..+.||+||.
T Consensus       159 Gk~vvViGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~~l~~~~~~ADIvIs  208 (284)
T PRK14177        159 GKNAVVVGRSPILGKPMAMLLTEMN--ATVTLCHSKT----------------------------QNLPSIVRQADIIVG  208 (284)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            67999999 5889999999999988  8999876432                            156667889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-..+   +  -..++++|++||++.
T Consensus       209 AvGk~~~---i--~~~~ik~gavVIDvG  231 (284)
T PRK14177        209 AVGKPEF---I--KADWISEGAVLLDAG  231 (284)
T ss_pred             eCCCcCc---c--CHHHcCCCCEEEEec
Confidence            9985443   1  145678999999875

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.58  E-value=0.078  Score=58.93  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||+|||+|..|...|..|++.|  ++|+++++.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~  226 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANE  226 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence            579999999999999999999999  9999999764

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.58  E-value=0.083  Score=52.36  Aligned_cols=72  Identities=21%  Similarity=0.194  Sum_probs=56.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||- ..+|.++|..|.+.+  ..|+++....                            .++++..+.||+||.
T Consensus       157 Gk~vvVvGrS~iVGkPla~lL~~~~--atVt~chs~T----------------------------~nl~~~~~~ADIvIs  206 (282)
T PRK14166        157 GKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLIIV  206 (282)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            679999995 788999999999888  8999776532                            156667789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-..+-     -..++++|++||++.
T Consensus       207 AvGkp~~i-----~~~~vk~GavVIDvG  229 (282)
T PRK14166        207 AAGCVNLL-----RSDMVKEGVIVVDVG  229 (282)
T ss_pred             cCCCcCcc-----CHHHcCCCCEEEEec
Confidence            99854431     135678899999875

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=94.55  E-value=0.1  Score=59.52  Aligned_cols=102  Identities=16%  Similarity=0.235  Sum_probs=68.5

Q ss_pred             CcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH---------
Q 012720           94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV---------  164 (458)
Q Consensus        94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~---------  164 (458)
                      .--+|.+.--+|+.      -|- +-++++..+.++|+|||.|.-|.+-|..|-++|  |.|++|.|....         
T Consensus      1759 ksie~aiid~af~e------gwm-~p~pp~~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygip 1829 (2142)
T KOG0399|consen 1759 KSIECAIIDKAFEE------GWM-KPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGIP 1829 (2142)
T ss_pred             cchhhHHHHHHHHh------cCC-ccCCcccccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecCC
Confidence            34567788888877      442 225667667899999999999999999999999  999999987521         


Q ss_pred             ------------HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc
Q 012720          165 ------------CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ  210 (458)
Q Consensus       165 ------------~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~  210 (458)
                                  ++-+.++|++  ++....+-++    -++++..+.-|.|++|+-++
T Consensus      1830 nmkldk~vv~rrv~ll~~egi~--f~tn~eigk~----vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1830 NMKLDKFVVQRRVDLLEQEGIR--FVTNTEIGKH----VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             ccchhHHHHHHHHHHHHhhCce--EEeecccccc----ccHHHHhhccCeEEEEeCCC
Confidence                        1122223321  1111111111    25677778899999988653

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.54  E-value=0.27  Score=48.85  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=36.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+|+.+..+.+.+
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G--~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRG--ATVVAVARREDLLDAVAD   82 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            368999996 999999999999999  999999999877666544

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=94.53  E-value=0.092  Score=52.46  Aligned_cols=72  Identities=19%  Similarity=0.360  Sum_probs=56.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||- ..+|.++|..|.+.|  ..|+++....                            .++++.+++||+||.
T Consensus       167 Gk~vvVIGRS~iVGkPla~lL~~~~--ATVtvchs~T----------------------------~nl~~~~~~ADIvv~  216 (299)
T PLN02516        167 GKKAVVVGRSNIVGLPVSLLLLKAD--ATVTVVHSRT----------------------------PDPESIVREADIVIA  216 (299)
T ss_pred             CCEEEEECCCccchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            689999995 788999999999988  8999885421                            156677899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-..   ++.  ..++++|++||++.
T Consensus       217 AvGk~~---~i~--~~~vk~gavVIDvG  239 (299)
T PLN02516        217 AAGQAM---MIK--GDWIKPGAAVIDVG  239 (299)
T ss_pred             cCCCcC---ccC--HHHcCCCCEEEEee
Confidence            997532   111  35688999999875

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.51  E-value=0.084  Score=52.33  Aligned_cols=72  Identities=22%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++++|||- ..+|.++|..|.+.+  ..|+++....                            .++.+.++.||+||.
T Consensus       157 Gk~vvVvGrS~iVGkPla~lL~~~~--atVtichs~T----------------------------~~l~~~~~~ADIvI~  206 (284)
T PRK14170        157 GKRAVVIGRSNIVGKPVAQLLLNEN--ATVTIAHSRT----------------------------KDLPQVAKEADILVV  206 (284)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            679999995 778999999999988  8999874321                            156677889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+   +  -..++++|++||++.
T Consensus       207 AvG~~~~---i--~~~~vk~GavVIDvG  229 (284)
T PRK14170        207 ATGLAKF---V--KKDYIKPGAIVIDVG  229 (284)
T ss_pred             ecCCcCc---c--CHHHcCCCCEEEEcc
Confidence            9985442   1  135678899999875

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.50  E-value=0.092  Score=52.05  Aligned_cols=72  Identities=25%  Similarity=0.245  Sum_probs=56.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||- ..+|.++|..|.+.+  ..|+++....                            .|+.+..+.||+||.
T Consensus       158 Gk~vvViGrS~~VGkPla~lL~~~~--ATVt~chs~T----------------------------~dl~~~~k~ADIvIs  207 (282)
T PRK14180        158 GAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILIV  207 (282)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHhhhcCEEEE
Confidence            679999994 789999999999988  8999875432                            155566789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+   +.  ..++++|++||++.
T Consensus       208 AvGkp~~---i~--~~~vk~gavVIDvG  230 (282)
T PRK14180        208 AVGKPNF---IT--ADMVKEGAVVIDVG  230 (282)
T ss_pred             ccCCcCc---CC--HHHcCCCcEEEEec
Confidence            9985443   11  35678899999875

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=94.49  E-value=0.32  Score=46.63  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      |+|.|+|+ |.+|..++..|++.|  ++|++.+|+++.++.+..
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   42 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQG--HKVIATGRRQERLQELKD   42 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            68999995 999999999999999  999999999877665543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.47  E-value=0.16  Score=48.58  Aligned_cols=94  Identities=12%  Similarity=-0.035  Sum_probs=57.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH----------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP----------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~----------~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      .++|+|.|.|++|..+|..|.+.|  . .|.+.|.+.          +.++..++.+....+ +.      .... +.++
T Consensus        23 g~~vaIqGfGnVG~~~a~~L~~~G--~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~-~~------~~~~-~~~~   92 (217)
T cd05211          23 GLTVAVQGLGNVGWGLAKKLAEEG--GKVLAVSDPDGYIYDPGITTEELINYAVALGGSARV-KV------QDYF-PGEA   92 (217)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcccc-Cc------cccc-Cccc
Confidence            579999999999999999999998  5 555678777          655555544321111 11      1111 1122


Q ss_pred             h-cCCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccC
Q 012720          196 A-LLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       196 a-~~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      . -.+||++|-|..... ..+....+    + -.+|+--.|+
T Consensus        93 l~~~~~DVlipaA~~~~i~~~~a~~l----~-a~~V~e~AN~  129 (217)
T cd05211          93 ILGLDVDIFAPCALGNVIDLENAKKL----K-AKVVAEGANN  129 (217)
T ss_pred             ceeccccEEeeccccCccChhhHhhc----C-ccEEEeCCCC
Confidence            2 137999999998654 23333333    2 3466666664

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.47  E-value=0.13  Score=53.70  Aligned_cols=93  Identities=12%  Similarity=0.099  Sum_probs=54.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCC----------CCCCceEE------
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPENVIA------  189 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~----------~l~~~i~a------  189 (458)
                      ..||.|||+|.+|+.+|..|+.+|. -+++++|.+.=....+.++-+ .....+..          .+.+.+++      
T Consensus        42 ~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  120 (392)
T PRK07878         42 NARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR  120 (392)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence            4689999999999999999999995 478888876422222221100 00000000          01111111      


Q ss_pred             -e-CCHHhhcCCCCEEEEcCccccHHHHHHhhh
Q 012720          190 -T-TDAKTALLGADYCLHAMPVQFSSSFLEGIS  220 (458)
Q Consensus       190 -~-~~~~ea~~~aDiVilaVp~~~v~~vl~~i~  220 (458)
                       . .+..+.++++|+||.|+-....+..+.++.
T Consensus       121 i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~  153 (392)
T PRK07878        121 LDPSNAVELFSQYDLILDGTDNFATRYLVNDAA  153 (392)
T ss_pred             CChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence             1 123456788999999987766666666653

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.44  E-value=0.24  Score=46.85  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=35.2

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++|.|+|+ |.+|..++..|++.|  ++|++++|+++..+.+.+
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~   48 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEG--YKVAITARDQKELEEAAA   48 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCC--CEEEEeeCCHHHHHHHHH
Confidence            67999996 999999999999998  899999999876655543

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.44  E-value=0.14  Score=55.57  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=38.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~  171 (458)
                      .+++.|+|+|.+|.+++..|++.|  .+|++++|+.++++.+.+.
T Consensus       379 ~k~vlIlGaGGagrAia~~L~~~G--~~V~i~nR~~e~a~~la~~  421 (529)
T PLN02520        379 GKLFVVIGAGGAGKALAYGAKEKG--ARVVIANRTYERAKELADA  421 (529)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHH
Confidence            468999999999999999999999  8999999999888877653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=94.43  E-value=0.11  Score=59.45  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=31.6

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      +.+||+|||+|.-|...|..|++.|  |+|++|+..
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccc
Confidence            4689999999999999999999999  999999964

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.42  E-value=0.09  Score=57.05  Aligned_cols=42  Identities=17%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++++|+.+..+.+.+
T Consensus        80 gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~Rn~ekl~~l~~  122 (576)
T PLN03209         80 EDLAFVAGATGKVGSRTVRELLKLG--FRVRAGVRSAQRAESLVQ  122 (576)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence            467999996 999999999999999  999999999887765543

>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.37  E-value=0.048  Score=45.24  Aligned_cols=85  Identities=21%  Similarity=0.196  Sum_probs=55.5

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhh
Q 012720          333 NLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVS  412 (458)
Q Consensus       333 kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~k  412 (458)
                      |+..|.+.++....++|+..+|+++|+|...+.+..+....+.      ..-..+|.-+ .|.++             .|
T Consensus         8 K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~------~~~~~pg~g~-GG~Cl-------------pk   67 (96)
T PF00984_consen    8 KYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG------PHYLRPGPGF-GGSCL-------------PK   67 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT------SSS-S-SSS---SSCH-------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc------cccCCCCCCC-CCcch-------------hh
Confidence            4555677788889999999999999999776654322111000      0000111111 13444             28


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          413 TAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       413 d~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      |...++..++++|.+.++++.+.+.
T Consensus        68 D~~~L~~~~~~~g~~~~ll~~~~~~   92 (96)
T PF00984_consen   68 DPYALIYLAKELGYPPQLLEAVINI   92 (96)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            8899999999999999998887764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=94.36  E-value=0.2  Score=48.26  Aligned_cols=95  Identities=16%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeC----------CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMR----------DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r----------~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      .++|+|.|.|++|..+|..|.+.|  ..|+ +.|.          +.+.+.++++.......     ++. .... +.++
T Consensus        31 ~~~v~I~G~G~VG~~~a~~L~~~g--~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~-----~~~-~~~~-~~~~  101 (227)
T cd01076          31 GARVAIQGFGNVGSHAARFLHEAG--AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG-----FPG-AERI-TNEE  101 (227)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc-----CCC-ceec-CCcc
Confidence            589999999999999999999998  8888 5566          55555544443211111     111 1111 1222


Q ss_pred             h-cCCCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccC
Q 012720          196 A-LLGADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       196 a-~~~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      . -.+||+++-|.+... ..+.+..+.     -.+|+--.|+
T Consensus       102 i~~~~~Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~  138 (227)
T cd01076         102 LLELDCDILIPAALENQITADNADRIK-----AKIIVEAANG  138 (227)
T ss_pred             ceeecccEEEecCccCccCHHHHhhce-----eeEEEeCCCC
Confidence            2 237899999987644 444444432     2356666654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=94.35  E-value=0.054  Score=55.47  Aligned_cols=36  Identities=28%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +.+++|+|||+|.+|...|..|+++|  ++|+++++..
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~   37 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGE   37 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCc
Confidence            34679999999999999999999999  8999999776

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.34  E-value=0.1  Score=52.08  Aligned_cols=72  Identities=18%  Similarity=0.219  Sum_probs=56.3

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+.+  ..|+++....                            .++.+.+++||+||.
T Consensus       160 Gk~vvViGrS~iVGkPla~lL~~~~--aTVt~chs~T----------------------------~~l~~~~~~ADIvVs  209 (294)
T PRK14187        160 GSDAVVIGRSNIVGKPMACLLLGEN--CTVTTVHSAT----------------------------RDLADYCSKADILVA  209 (294)
T ss_pred             CCEEEEECCCccchHHHHHHHhhCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            67999999 5789999999999988  8999876532                            156677889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+   +  -..++++|++||++.
T Consensus       210 AvGkp~~---i--~~~~ik~gaiVIDVG  232 (294)
T PRK14187        210 AVGIPNF---V--KYSWIKKGAIVIDVG  232 (294)
T ss_pred             ccCCcCc---c--CHHHcCCCCEEEEec
Confidence            9985443   1  135677899999874

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=94.33  E-value=0.054  Score=56.21  Aligned_cols=48  Identities=31%  Similarity=0.554  Sum_probs=37.4

Q ss_pred             ccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhc-CCCC-eEEEEeCCH
Q 012720          109 VRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDP  162 (458)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~a-G~~~-~V~v~~r~~  162 (458)
                      +-|++.|+..+..    +.-.|.|||+|.+|+++|..|++. |  . +|+++++..
T Consensus        16 ~~~~~~~~~~~~~----~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~   65 (407)
T TIGR01373        16 RGWKPAWRSPEPK----PTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGW   65 (407)
T ss_pred             CCCCcccCCCCCC----ccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEccc
Confidence            3488888875211    123699999999999999999985 7  5 899999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=94.30  E-value=0.32  Score=46.95  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=35.2

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      |+|.|.|+ |.+|..+|..|+++|  ++|++.+|+++..+.+.+
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   42 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKG--ARVVISSRNEENLEKALK   42 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            58999996 889999999999999  999999999876655543

>PRK07236 hypothetical protein; Provisional

Probab=94.30  E-value=0.054  Score=55.88  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=32.2

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..++|.|||+|..|.++|..|+++|  ++|+++++.+
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~   39 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSP   39 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            3479999999999999999999999  9999999875

>PRK06753 hypothetical protein; Provisional

Probab=94.30  E-value=0.051  Score=55.56  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=31.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |+|.|||+|..|.++|..|+++|  ++|+++.+.+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence            68999999999999999999999  99999998864

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.29  E-value=0.034  Score=55.34  Aligned_cols=72  Identities=18%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||.|.|+ |.+|..++..|++.|  ++|++++|+++....+...+.  .+.     ...+.-.++++++++++|+||.+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~~~~~l~~~~~~~d~vi~~   71 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQG--EEVRVLVRPTSDRRNLEGLDV--EIV-----EGDLRDPASLRKAVAGCRALFHV   71 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCC--CEEEEEEecCccccccccCCc--eEE-----EeeCCCHHHHHHHHhCCCEEEEe
Confidence            58999995 999999999999999  999999998754332221111  000     00011012344567789999887


Q ss_pred             Cc
Q 012720          207 MP  208 (458)
Q Consensus       207 Vp  208 (458)
                      ..
T Consensus        72 a~   73 (328)
T TIGR03466        72 AA   73 (328)
T ss_pred             ce
Confidence            64

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.27  E-value=0.14  Score=54.98  Aligned_cols=68  Identities=21%  Similarity=0.181  Sum_probs=45.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .++|.|+|.|..|.++|+.|.+.|  ++|+++|....  ..+.+.+.+....          +..-....+.+.++|+||
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~~~~~L~~~~~~~~----------~~~g~~~~~~~~~~d~vv   74 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPPNLAALRAELPDAE----------FVGGPFDPALLDGVDLVA   74 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCchhHHHHHhhcCCcE----------EEeCCCchhHhcCCCEEE
Confidence            468999999999999999999999  99999996542  2334544322111          111111223456889999


Q ss_pred             Ec
Q 012720          205 HA  206 (458)
Q Consensus       205 la  206 (458)
                      .+
T Consensus        75 ~s   76 (498)
T PRK02006         75 LS   76 (498)
T ss_pred             EC
Confidence            86

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.27  E-value=0.11  Score=54.97  Aligned_cols=44  Identities=23%  Similarity=0.203  Sum_probs=35.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g  172 (458)
                      .+||.|||.|..|.+.|..|.+.|  ++|+++|+.......+.+.|
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~~~~l~~~g   52 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGG--AEVIAWDDNPASRAKAAAAG   52 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCC--CEEEEECCChhhHHHHHhcC
Confidence            468999999999999999999999  99999998755444444434

>PRK09186 flagellin modification protein A; Provisional

Probab=94.26  E-value=0.31  Score=46.66  Aligned_cols=44  Identities=16%  Similarity=0.217  Sum_probs=37.2

Q ss_pred             cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ...++|.|.|+ |.+|..+|..|++.|  ++|++.+|+++.++.+.+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~   46 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAG--GIVIAADIDKEALNELLE   46 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEecChHHHHHHHH
Confidence            34578999996 899999999999999  999999999877665543

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=94.26  E-value=0.095  Score=53.19  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=56.1

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+++  ..|+++....                            .++++..+.||+||.
T Consensus       214 GK~vvVIGRS~iVGkPla~LL~~~~--ATVTicHs~T----------------------------~nl~~~~~~ADIvIs  263 (345)
T PLN02897        214 GKNAVVIGRSNIVGLPMSLLLQRHD--ATVSTVHAFT----------------------------KDPEQITRKADIVIA  263 (345)
T ss_pred             CCEEEEECCCccccHHHHHHHHHCC--CEEEEEcCCC----------------------------CCHHHHHhhCCEEEE
Confidence            67999999 5788999999999988  8998875432                            155677899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-..+   +  -..++++|++||++.
T Consensus       264 AvGkp~~---v--~~d~vk~GavVIDVG  286 (345)
T PLN02897        264 AAGIPNL---V--RGSWLKPGAVVIDVG  286 (345)
T ss_pred             ccCCcCc---c--CHHHcCCCCEEEEcc
Confidence            9985442   1  135678899999875

>PRK07877 hypothetical protein; Provisional

Probab=94.25  E-value=0.09  Score=58.75  Aligned_cols=92  Identities=15%  Similarity=0.072  Sum_probs=55.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCC----------CCCC--ceEEe----
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQ----------KLPE--NVIAT----  190 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~----------~l~~--~i~a~----  190 (458)
                      ..||+|+|+| +|+..|..|+++|.--+++++|.+.=....++........++..          .+.+  .|.+.    
T Consensus       107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i  185 (722)
T PRK07877        107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL  185 (722)
T ss_pred             cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            5789999999 99999999999982026777776642222222210000000000          0011  12211    


Q ss_pred             --CCHHhhcCCCCEEEEcCccccHHHHHHhh
Q 012720          191 --TDAKTALLGADYCLHAMPVQFSSSFLEGI  219 (458)
Q Consensus       191 --~~~~ea~~~aDiVilaVp~~~v~~vl~~i  219 (458)
                        ++.++.++++|+||-|+-....+-++.+.
T Consensus       186 ~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~  216 (722)
T PRK07877        186 TEDNVDAFLDGLDVVVEECDSLDVKVLLREA  216 (722)
T ss_pred             CHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence              24566778999999999988777777654

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.19  E-value=0.12  Score=51.26  Aligned_cols=73  Identities=18%  Similarity=0.256  Sum_probs=56.2

Q ss_pred             CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      ..++|+||| ...+|.++|..|.+++  ..|+++....                            .++++..+.||+||
T Consensus       156 ~Gk~vvViGrS~iVGkPla~lL~~~~--AtVtichs~T----------------------------~nl~~~~~~ADIvI  205 (282)
T PRK14182        156 KGKRALVVGRSNIVGKPMAMMLLERH--ATVTIAHSRT----------------------------ADLAGEVGRADILV  205 (282)
T ss_pred             CCCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            368999999 5789999999999988  8899874321                            15666778999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .++.-..+   +.  ..++++|++||++.
T Consensus       206 ~AvGk~~~---i~--~~~ik~gaiVIDvG  229 (282)
T PRK14182        206 AAIGKAEL---VK--GAWVKEGAVVIDVG  229 (282)
T ss_pred             EecCCcCc---cC--HHHcCCCCEEEEee
Confidence            99985332   11  35678899999875

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=94.19  E-value=0.096  Score=53.43  Aligned_cols=72  Identities=17%  Similarity=0.270  Sum_probs=56.5

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+||| ...+|.++|..|.+++  ..|+++....                            .++.+.++.||+||.
T Consensus       231 GK~vvVIGRS~iVGkPLa~LL~~~~--ATVTicHs~T----------------------------~nl~~~~r~ADIVIs  280 (364)
T PLN02616        231 GKRAVVIGRSNIVGMPAALLLQRED--ATVSIVHSRT----------------------------KNPEEITREADIIIS  280 (364)
T ss_pred             CCEEEEECCCccccHHHHHHHHHCC--CeEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            67999999 5889999999999988  8999875321                            156677899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-..+   +  -..++++|++||++.
T Consensus       281 AvGkp~~---i--~~d~vK~GAvVIDVG  303 (364)
T PLN02616        281 AVGQPNM---V--RGSWIKPGAVVIDVG  303 (364)
T ss_pred             cCCCcCc---C--CHHHcCCCCEEEecc
Confidence            9985443   1  135678999999874

>PRK08374 homoserine dehydrogenase; Provisional

Probab=94.18  E-value=0.086  Score=53.77  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHh--------cCCCCeEE-EEeCCHHH-------HHHHHhhcCCCccCCCCCCCCceEE-
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN--------KKSQLKVY-MLMRDPAV-------CQSINEKHCNCRYFPEQKLPENVIA-  189 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~--------aG~~~~V~-v~~r~~~~-------~e~l~~~g~~~~~~~~~~l~~~i~a-  189 (458)
                      +++|+|+|.|++|..++..|.+        .|.+..|. +.+++...       .+++.+.........  .++..... 
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~--~~~~~~~~~   79 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS--NWGNDYEVY   79 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh--hcccccccc
Confidence            4799999999999999999887        34223444 33543211       111111000000000  01000000 


Q ss_pred             eCCHHhhc--CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          190 TTDAKTAL--LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       190 ~~~~~ea~--~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ..+.++.+  .++|+||-++......+++..   .+..|..||...+|.
T Consensus        80 ~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~---al~~G~~VVtanK~~  125 (336)
T PRK08374         80 NFSPEEIVEEIDADIVVDVTNDKNAHEWHLE---ALKEGKSVVTSNKPP  125 (336)
T ss_pred             CCCHHHHHhcCCCCEEEECCCcHHHHHHHHH---HHhhCCcEEECCHHH
Confidence            11556655  479999999976655555444   445688888888773

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=94.17  E-value=0.074  Score=41.01  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=27.1

Q ss_pred             EECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          132 VLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       132 IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |||+|.-|.+.|..|+++|  ++|+++++...
T Consensus         1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTT--SEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCC--CcEEEEecCcc
Confidence            8999999999999999998  99999998863

...

>PLN03075 nicotianamine synthase; Provisional

Probab=94.17  E-value=0.49  Score=47.29  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=64.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhh---cCCCC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTA---LLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea---~~~aD  201 (458)
                      ...+|+.||+|..|..-...++....+..++.+|.+++..+..++.-..     ...+..++++. .|..+.   ..+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-----~~gL~~rV~F~~~Da~~~~~~l~~FD  197 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-----DPDLSKRMFFHTADVMDVTESLKEYD  197 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-----ccCccCCcEEEECchhhcccccCCcC
Confidence            4578999999999876554444443224799999999877655543211     00111223321 232221   36899


Q ss_pred             EEEEcCc----cccHHHHHHhhhhcCCCCCeEEEec
Q 012720          202 YCLHAMP----VQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       202 iVilaVp----~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|++.+=    ...-..+++.+.+.+++|.+++.-+
T Consensus       198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        198 VVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            9999852    1456778899999999998776543

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.16  E-value=0.12  Score=51.43  Aligned_cols=72  Identities=18%  Similarity=0.313  Sum_probs=55.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++++|||- ..+|.++|..|.+.+  ..|+++....                            .++.+.++.||+||.
T Consensus       159 GK~vvViGrS~iVGkPla~lL~~~~--ATVtichs~T----------------------------~~L~~~~~~ADIvV~  208 (288)
T PRK14171        159 GKNVVIIGRSNIVGKPLSALLLKEN--CSVTICHSKT----------------------------HNLSSITSKADIVVA  208 (288)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHCC--CEEEEeCCCC----------------------------CCHHHHHhhCCEEEE
Confidence            679999995 788999999999888  8999775321                            156667889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++.-...   +  -..++++|++||++.
T Consensus       209 AvGkp~~---i--~~~~vk~GavVIDvG  231 (288)
T PRK14171        209 AIGSPLK---L--TAEYFNPESIVIDVG  231 (288)
T ss_pred             ccCCCCc---c--CHHHcCCCCEEEEee
Confidence            9985431   1  135678899999875

>PRK05868 hypothetical protein; Validated

Probab=94.16  E-value=0.054  Score=55.84  Aligned_cols=35  Identities=34%  Similarity=0.418  Sum_probs=32.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |++|.|||+|..|.++|..|+++|  ++|+++++.++
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Confidence            578999999999999999999999  99999998754

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.15  E-value=0.11  Score=56.58  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ..++|+|||+|..|...|..|++.|  ++|+++++.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~  169 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAG  169 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence            3579999999999999999999999  999999864

>PRK07411 hypothetical protein; Validated

Probab=94.12  E-value=0.15  Score=53.04  Aligned_cols=93  Identities=11%  Similarity=0.124  Sum_probs=55.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCC----------CCCCc--eEE----
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQ----------KLPEN--VIA----  189 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~----------~l~~~--i~a----  189 (458)
                      ..||.|||+|.+|+.+|..|+.+|. -.++++|.+.=....+.++-+ +....+..          .+.+.  +.+    
T Consensus        38 ~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~  116 (390)
T PRK07411         38 AASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR  116 (390)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence            5689999999999999999999995 478888876422222222100 00000000          00111  111    


Q ss_pred             -e-CCHHhhcCCCCEEEEcCccccHHHHHHhhh
Q 012720          190 -T-TDAKTALLGADYCLHAMPVQFSSSFLEGIS  220 (458)
Q Consensus       190 -~-~~~~ea~~~aDiVilaVp~~~v~~vl~~i~  220 (458)
                       + .+..+.+.++|+||.|+-....+.++.++.
T Consensus       117 ~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~  149 (390)
T PRK07411        117 LSSENALDILAPYDVVVDGTDNFPTRYLVNDAC  149 (390)
T ss_pred             cCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence             1 123456788999999988777776666653

>PRK06182 short chain dehydrogenase; Validated

Probab=94.12  E-value=0.1  Score=50.78  Aligned_cols=41  Identities=22%  Similarity=0.307  Sum_probs=35.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      +++|.|.|+ |.+|..++..|++.|  ++|++.+|+.+.++.+.
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~l~~~~   44 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQG--YTVYGAARRVDKMEDLA   44 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            578999996 999999999999999  99999999987765554

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.08  E-value=0.11  Score=51.45  Aligned_cols=72  Identities=22%  Similarity=0.331  Sum_probs=55.5

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHh--cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVAN--KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~--aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .++++||| .+.+|.++|..|.+  ++  ..|+++....                            .++++.++.||+|
T Consensus       158 Gk~vvViGrS~~VGkPla~lL~~~~~~--atVtvchs~T----------------------------~~l~~~~k~ADIv  207 (284)
T PRK14193        158 GAHVVVIGRGVTVGRPIGLLLTRRSEN--ATVTLCHTGT----------------------------RDLAAHTRRADII  207 (284)
T ss_pred             CCEEEEECCCCcchHHHHHHHhhccCC--CEEEEeCCCC----------------------------CCHHHHHHhCCEE
Confidence            67999999 57899999999998  55  7888875431                            1566778999999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |.++....+   +.  ..++++|++||++.
T Consensus       208 V~AvGkp~~---i~--~~~ik~GavVIDvG  232 (284)
T PRK14193        208 VAAAGVAHL---VT--ADMVKPGAAVLDVG  232 (284)
T ss_pred             EEecCCcCc---cC--HHHcCCCCEEEEcc
Confidence            999985432   11  35678999999875

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.08  E-value=0.13  Score=50.50  Aligned_cols=42  Identities=12%  Similarity=0.276  Sum_probs=36.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +++|.|.|+ |.+|..+|..|++.|  ++|++.+|+++..+.+.+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G--~~Vi~~~r~~~~~~~l~~   46 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDG--WRVFATCRKEEDVAALEA   46 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            457999997 999999999999999  999999999887766654

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.02  E-value=0.15  Score=58.08  Aligned_cols=69  Identities=9%  Similarity=0.084  Sum_probs=47.8

Q ss_pred             hcCCCeEEEECcchHHHHH-HHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          124 LERTNKVVVLGGGSFGTAM-AAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~i-A~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      |+++++|.|||.|..|.+. |+.|.+.|  ++|+++|.++ ...+.+.+.|..  +          ..-.+. +.+.++|
T Consensus         1 ~~~~~~i~viG~G~sG~salA~~L~~~G--~~V~~sD~~~~~~~~~L~~~gi~--~----------~~g~~~-~~~~~~d   65 (809)
T PRK14573          1 MMKSLFYHFIGIGGIGMSALAHILLDRG--YSVSGSDLSEGKTVEKLKAKGAR--F----------FLGHQE-EHVPEDA   65 (809)
T ss_pred             CCCcceEEEEEecHHhHHHHHHHHHHCC--CeEEEECCCCChHHHHHHHCCCE--E----------eCCCCH-HHcCCCC
Confidence            5666789999999999997 99999999  9999999754 233445544421  1          001122 3456789


Q ss_pred             EEEEcC
Q 012720          202 YCLHAM  207 (458)
Q Consensus       202 iVilaV  207 (458)
                      +||.+-
T Consensus        66 ~vV~Sp   71 (809)
T PRK14573         66 VVVYSS   71 (809)
T ss_pred             EEEECC
Confidence            988753

>PLN02214 cinnamoyl-CoA reductase

Probab=93.97  E-value=0.11  Score=52.72  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=48.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH--HHhh-cC--CCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS--INEK-HC--NCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~--l~~~-g~--~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      +|+|.|.|+ |.+|+.++..|.++|  ++|++++|+.+....  +... +.  ...+.     ...+.-..+.+++++++
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~~~~   82 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELEGGKERLILC-----KADLQDYEALKAAIDGC   82 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhhCCCCcEEEE-----ecCcCChHHHHHHHhcC
Confidence            578999997 999999999999999  999999997653211  1111 00  00000     01111112345667889


Q ss_pred             CEEEEcCc
Q 012720          201 DYCLHAMP  208 (458)
Q Consensus       201 DiVilaVp  208 (458)
                      |+||.+..
T Consensus        83 d~Vih~A~   90 (342)
T PLN02214         83 DGVFHTAS   90 (342)
T ss_pred             CEEEEecC
Confidence            99998874

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.96  E-value=0.13  Score=51.21  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=31.8

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      .++|.|.| +|-+|+.++..|.+.|  ++|++++|+.+.
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g--~~V~~~~r~~~~   40 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRG--YTVKATVRDPND   40 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence            47899999 5999999999999999  999999887643

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=93.95  E-value=0.36  Score=49.64  Aligned_cols=93  Identities=12%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             CeEEEECc-chHHHHHHHHHH-hcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVA-NKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La-~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      |||+|+|+ |.+|..|-..|. +..++ .++.++...+..       |... .+.+...  .+...++. +...+.|++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~-------g~~~-~f~~~~~--~v~~~~~~-~~~~~vDivf   69 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLG-------QAAP-SFGGTTG--TLQDAFDI-DALKALDIII   69 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhC-------CCcC-CCCCCcc--eEEcCccc-ccccCCCEEE
Confidence            58999997 999999999999 55533 234445443211       1111 1112111  12222222 2467899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCC--CeEEEecc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK  234 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~--~ivV~~sn  234 (458)
                      +|.+....+++...+.+   .|  .+||+.+.
T Consensus        70 fa~g~~~s~~~~p~~~~---aG~~~~VIDnSS   98 (366)
T TIGR01745        70 TCQGGDYTNEIYPKLRE---SGWQGYWIDAAS   98 (366)
T ss_pred             EcCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence            99998877766655544   57  67888874

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.93  E-value=0.13  Score=50.99  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .++++|||- ..+|.++|..|.+.|.  +..|+++....                            .++++.++.||+|
T Consensus       153 Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T----------------------------~~l~~~~~~ADIv  204 (287)
T PRK14181        153 GRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS----------------------------ENLTEILKTADII  204 (287)
T ss_pred             CCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC----------------------------CCHHHHHhhCCEE
Confidence            689999995 7889999999998721  17888764321                            1566778999999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |.++....+   +  -..++++|++||++.
T Consensus       205 V~AvG~p~~---i--~~~~ik~GavVIDvG  229 (287)
T PRK14181        205 IAAIGVPLF---I--KEEMIAEKAVIVDVG  229 (287)
T ss_pred             EEccCCcCc---c--CHHHcCCCCEEEEec
Confidence            999985432   1  135678999999875

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.92  E-value=0.43  Score=45.36  Aligned_cols=41  Identities=20%  Similarity=0.225  Sum_probs=35.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|.+.+|+++..+.+.
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~   48 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFNDGLAAEARELA   48 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            478999996 999999999999999  99999999987665544

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.86  E-value=0.13  Score=59.56  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=31.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||+|||+|.-|.+.|..|++.|  |+|++|++..
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~  339 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFH  339 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCC
Confidence            689999999999999999999999  9999999764

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.77  E-value=0.17  Score=50.53  Aligned_cols=72  Identities=22%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~----aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      .++|+|||- ..+|.++|..|.+    .+  ..|++......                            ++++.++.||
T Consensus       159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--atVt~~hs~t~----------------------------~l~~~~~~AD  208 (295)
T PRK14174        159 GKHCVVVGRSNIVGKPMANLMLQKLKESN--CTVTICHSATK----------------------------DIPSYTRQAD  208 (295)
T ss_pred             CCEEEEECCCCcchHHHHHHHHhccccCC--CEEEEEeCCch----------------------------hHHHHHHhCC
Confidence            679999995 7889999999987    45  78887765431                            4566788999


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +||.++....+   +.  ..++++|++||++.
T Consensus       209 IvI~Avg~~~l---i~--~~~vk~GavVIDVg  235 (295)
T PRK14174        209 ILIAAIGKARF---IT--ADMVKPGAVVIDVG  235 (295)
T ss_pred             EEEEecCccCc---cC--HHHcCCCCEEEEee
Confidence            99999975432   11  34568899999876

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=93.74  E-value=0.074  Score=53.11  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=29.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .+|+|||+|.-|+++|..|+++|  ++|+++++.+.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcc--cccccchhccc
Confidence            37999999999999999999999  99999998763

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.74  E-value=0.079  Score=54.49  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhc---CCCCeEEEEeCC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRD  161 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~a---G~~~~V~v~~r~  161 (458)
                      .+++|.|||+|..|.++|..|+++   |  ++|+++++.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence            457899999999999999999998   9  999999984

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.72  E-value=0.18  Score=50.04  Aligned_cols=72  Identities=21%  Similarity=0.284  Sum_probs=55.2

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVAN----KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~----aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      .++++||| ...+|.++|..|.+    .+  ..|+++.....                            ++.+.++.||
T Consensus       157 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~--AtVt~~hs~t~----------------------------~l~~~~~~AD  206 (286)
T PRK14184        157 GKKAVVVGRSNIVGKPLALMLGAPGKFAN--ATVTVCHSRTP----------------------------DLAEECREAD  206 (286)
T ss_pred             CCEEEEECCCccchHHHHHHHhCCcccCC--CEEEEEeCCch----------------------------hHHHHHHhCC
Confidence            67999999 57899999999998    55  78888765431                            5566788999


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +||.++....+   +.  ..++++|++||++.
T Consensus       207 IVI~AvG~p~l---i~--~~~vk~GavVIDVG  233 (286)
T PRK14184        207 FLFVAIGRPRF---VT--ADMVKPGAVVVDVG  233 (286)
T ss_pred             EEEEecCCCCc---CC--HHHcCCCCEEEEee
Confidence            99999986443   11  24558899999875

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.68  E-value=0.067  Score=55.59  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      +..+|||.|+|+ |.+|..++..|.++|  ++|++++|+...
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G--~~V~~l~R~~~~   96 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRG--YNVVAVAREKSG   96 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEEechhh
Confidence            444689999996 999999999999999  999999998754

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.67  E-value=0.098  Score=52.26  Aligned_cols=31  Identities=32%  Similarity=0.481  Sum_probs=29.7

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      +|+|||+|..|...|..|++.|  ++|+++++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEeec
Confidence            4899999999999999999999  999999998

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07774 short chain dehydrogenase; Provisional

Probab=93.64  E-value=0.5  Score=45.02  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .+++.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g--~~vi~~~r~~~~~~~~~   47 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREG--ASVVVADINAEGAERVA   47 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            368999997 999999999999999  99999999976655543

>PLN02780 ketoreductase/ oxidoreductase

Probab=93.62  E-value=0.4  Score=48.41  Aligned_cols=42  Identities=21%  Similarity=0.419  Sum_probs=36.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+.+.|.|+ |.+|.++|..|+++|  ++|.+++|+++..+.+.+
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G--~~Vil~~R~~~~l~~~~~   95 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKG--LNLVLVARNPDKLKDVSD   95 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH
Confidence            467889996 889999999999999  999999999988776654

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=93.59  E-value=0.6  Score=46.21  Aligned_cols=101  Identities=11%  Similarity=0.143  Sum_probs=64.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc----CCC-----CeEEEEeCCHH------HHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATT  191 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a----G~~-----~~V~v~~r~~~------~~e~l~~~g~~~~~~~~~~l~~~i~a~~  191 (458)
                      ..||.|+|+|+-|..+|..|...    |..     .+++++|+.--      .+...+..-..     .  .+.  .-..
T Consensus        25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~-----~--~~~--~~~~   95 (279)
T cd05312          25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFAR-----K--DEE--KEGK   95 (279)
T ss_pred             hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHh-----h--cCc--ccCC
Confidence            36899999999999999999887    731     37888887620      01111110000     0  000  1124


Q ss_pred             CHHhhcC--CCCEEEEcCc--cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          192 DAKTALL--GADYCLHAMP--VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       192 ~~~ea~~--~aDiVilaVp--~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ++.|+++  ++|++|=+..  --..+++++.+..+.+ .-+|..++|-..
T Consensus        96 ~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~-~PIIFaLSNPt~  144 (279)
T cd05312          96 SLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE-RPIIFALSNPTS  144 (279)
T ss_pred             CHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC-CCEEEECCCcCC
Confidence            7889998  8899887663  3467888888776654 567777888554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.59  E-value=0.44  Score=45.73  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=36.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..++..|+++|  ++|.+.+|+++..+++.+
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~   49 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAG--AAVAIADLNQDGANAVAD   49 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence            467999997 999999999999999  999999999876655543

>PRK07588 hypothetical protein; Provisional

Probab=93.56  E-value=0.081  Score=54.58  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.2

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |+|.|||+|..|.++|..|+++|  ++|+++.+.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence            58999999999999999999999  99999997653

>PRK09242 tropinone reductase; Provisional

Probab=93.54  E-value=0.66  Score=44.57  Aligned_cols=42  Identities=17%  Similarity=0.286  Sum_probs=36.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|..++..|++.|  ++|++.+|+.+..+.+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~   51 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLG--ADVLIVARDADALAQARD   51 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            468999996 899999999999999  999999999877665544

>PRK06139 short chain dehydrogenase; Provisional

Probab=93.53  E-value=0.52  Score=47.82  Aligned_cols=42  Identities=26%  Similarity=0.395  Sum_probs=36.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+|+++..+.+.+
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~   49 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRG--ARLVLAARDEEALQAVAE   49 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            357999997 899999999999999  999999999887766544

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.47  E-value=0.087  Score=54.21  Aligned_cols=33  Identities=30%  Similarity=0.531  Sum_probs=30.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+|.|||+|..|+++|..|+++|  ++|+++++.+
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~   40 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAG--ASVALVAPEP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCC
Confidence            47999999999999999999999  9999999874

>PRK07538 hypothetical protein; Provisional

Probab=93.47  E-value=0.086  Score=54.96  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |+|.|||+|..|.++|..|+++|  ++|+++++.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCc
Confidence            68999999999999999999999  99999998763

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=93.45  E-value=0.097  Score=54.18  Aligned_cols=34  Identities=21%  Similarity=0.497  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc--CCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a--G~~~~V~v~~r~~  162 (458)
                      +..|.|||+|.+|.++|..|++.  |  ++|+++++..
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g--~~V~llE~~~   37 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPG--ARIAVLEKES   37 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCC--CeEEEEeCCC
Confidence            35899999999999999999998  8  9999999875

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=93.43  E-value=4.3  Score=40.08  Aligned_cols=165  Identities=16%  Similarity=0.183  Sum_probs=91.2

Q ss_pred             CceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEE
Q 012720          185 ENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS  263 (458)
Q Consensus       185 ~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~  263 (458)
                      -++++++|-.|+++++|++|+.+|-- ...++++++.+++++|.+|.+.= ++.+-   .+...++. +++.  ++.+.+
T Consensus       125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tC-TIpt~---~ly~ilE~-l~R~--DvgVsS  197 (340)
T TIGR01723       125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHAC-TIPTT---KFAKIFED-LGRE--DLNVTS  197 (340)
T ss_pred             cCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccc-cCChH---HHHHHHHh-hCcc--cCCeec
Confidence            35778877778899999999999964 47889999999999998876532 35442   33344444 3432  222221


Q ss_pred             -CcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHH--HHHHHHHHHHHHHHHHhcc----c-C
Q 012720          264 -GPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS-DVTGVE--IAGALKNVLAIAAGIVVGM----N-L  334 (458)
Q Consensus       264 -gP~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~--~~kalkNi~ai~~G~~~~~----k-l  334 (458)
                       =|...-+ ..++. .+.-+-.+++..+++.++.++.+...+..+ |+.+..  .++++--+.  ..|++.=.    + +
T Consensus       198 ~HPaaVPg-t~~q~-Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv~--~aGiL~Y~~~~t~Il  273 (340)
T TIGR01723       198 YHPGCVPE-MKGQV-YIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAIV--YAGLLAYRDAVTKIL  273 (340)
T ss_pred             cCCCCCCC-CCCce-EeecccCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence             1211111 01111 222233578999999999998877766543 333211  122211110  11322111    1 2


Q ss_pred             CCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012720          335 GNN--SMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       335 ~~n--~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      +..  .........+.-+..+-+..|++
T Consensus       274 gAP~~miq~qa~eaL~tmasLme~~GI~  301 (340)
T TIGR01723       274 GAPADFAQMMADEALTQIHNLMEEKGID  301 (340)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            222  22244555666677777777776

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.42  E-value=0.089  Score=54.20  Aligned_cols=38  Identities=8%  Similarity=0.101  Sum_probs=33.9

Q ss_pred             hhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          123 ILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       123 ~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .|...|||.|.|+ |.+|+.++..|.+.|  ++|+.++|..
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~   55 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKK   55 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecc
Confidence            4556789999997 999999999999999  9999999864

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.41  E-value=0.16  Score=51.72  Aligned_cols=40  Identities=15%  Similarity=0.157  Sum_probs=34.5

Q ss_pred             chhhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          121 TDILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       121 ~~~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +.+..++|||.|.|+ |-+|+.++..|.+.|  ++|++++|..
T Consensus         9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~   49 (348)
T PRK15181          9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFS   49 (348)
T ss_pred             hcccccCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCC
Confidence            345556789999996 999999999999999  9999999854

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=93.40  E-value=0.098  Score=53.43  Aligned_cols=33  Identities=36%  Similarity=0.423  Sum_probs=30.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..|.|||+|.+|+++|..|++.|  ++|+++++..
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCC--CeEEEEeccc
Confidence            46999999999999999999999  9999999875

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=93.39  E-value=0.17  Score=49.83  Aligned_cols=72  Identities=24%  Similarity=0.277  Sum_probs=56.4

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||.+ -+|.+||..|..++  +.|+++.....                            ++.+..+.||++|.
T Consensus       156 Gk~~vVVGrS~iVGkPla~lL~~~n--aTVtvcHs~T~----------------------------~l~~~~k~ADIvv~  205 (283)
T COG0190         156 GKNVVVVGRSNIVGKPLALLLLNAN--ATVTVCHSRTK----------------------------DLASITKNADIVVV  205 (283)
T ss_pred             CCEEEEECCCCcCcHHHHHHHHhCC--CEEEEEcCCCC----------------------------CHHHHhhhCCEEEE
Confidence            6799999975 57999999999988  99998865431                            55666789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++--..+-.     .+++++|.+||+..
T Consensus       206 AvG~p~~i~-----~d~vk~gavVIDVG  228 (283)
T COG0190         206 AVGKPHFIK-----ADMVKPGAVVIDVG  228 (283)
T ss_pred             ecCCccccc-----cccccCCCEEEecC
Confidence            998543211     56788999999874

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.39  E-value=0.63  Score=47.16  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=56.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..+|.|+|+|.+|...+..+.+ .| ..+|++.++++++.+.+++.+..  +           ...+..+. ..+|+||-
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~~~~~--~-----------~~~~~~~~-~g~d~viD  228 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSFADET--Y-----------LIDDIPED-LAVDHAFE  228 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhhcCce--e-----------ehhhhhhc-cCCcEEEE
Confidence            4689999999999987777665 33 16799999998887766542211  0           11111121 25899999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      ++........+......++++..++.+
T Consensus       229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         229 CVGGRGSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence            987432333444555566666555544

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.37  E-value=0.73  Score=46.63  Aligned_cols=92  Identities=15%  Similarity=0.092  Sum_probs=58.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~aDi  202 (458)
                      ..+|.|+|+|.+|......+...|  . .|++.++++++.+.+++.|........     .    .+..+.   ....|+
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~-----~----~~~~~~~~~~g~~D~  238 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQ-----N----DDLDHYKAEKGYFDV  238 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCC-----c----ccHHHHhccCCCCCE
Confidence            468999999999998887777777  6 688899999888877776643211000     0    011121   124799


Q ss_pred             EEEcCccc-cHHHHHHhhhhcCCCCCeEEEec
Q 012720          203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       203 VilaVp~~-~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ||-|+... .+...+    ..++++..++.+.
T Consensus       239 vid~~G~~~~~~~~~----~~l~~~G~iv~~G  266 (343)
T PRK09880        239 SFEVSGHPSSINTCL----EVTRAKGVMVQVG  266 (343)
T ss_pred             EEECCCCHHHHHHHH----HHhhcCCEEEEEc
Confidence            99998853 333333    3445555565553

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=93.37  E-value=0.17  Score=51.02  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=29.5

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ||.|||+|.+|+.++..|+..|. .+++++|.+.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLDT   33 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCCC
Confidence            68999999999999999999995 5788888765

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=93.36  E-value=0.096  Score=54.02  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..+|.|||+|..|.++|..|++.|  ++|+++++.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence            358999999999999999999999  9999999753

>PRK08017 oxidoreductase; Provisional

Probab=93.34  E-value=0.19  Score=48.10  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=35.2

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      ++|.|.|+ |.+|..++..|++.|  ++|++.+|+.+..+.+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g--~~v~~~~r~~~~~~~~~   43 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRG--YRVLAACRKPDDVARMN   43 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHhHHHH
Confidence            47999998 999999999999999  89999999987665554

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=93.32  E-value=0.096  Score=55.77  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=33.7

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      +...++|+|||+|.-|.+.|..|.+.|  ++|+++.++..
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~   44 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQ   44 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence            334579999999999999999999999  99999998764

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.28  E-value=0.65  Score=45.13  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=35.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|+++|  ++|++++|+++..+.+.
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   48 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAG--AAVMIVGRNPDKLAAAA   48 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH
Confidence            478999996 899999999999999  99999999987655544

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=93.28  E-value=0.1  Score=53.94  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +.+|.|||+|..|.++|..|+++|  ++|+++++.+
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCC
Confidence            458999999999999999999999  9999999864

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.28  E-value=0.59  Score=47.47  Aligned_cols=93  Identities=18%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r---~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|++++|   ++++.+.+++.|........    ..+  . +. .....+|+|
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~----~~~--~-~~-~~~~~~d~v  242 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEELGATYVNSSK----TPV--A-EV-KLVGEFDLI  242 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHcCCEEecCCc----cch--h-hh-hhcCCCCEE
Confidence            468999999999999888877778  78999998   56677666665542110000    000  0 01 112468999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |-|+....   .+......++++..++.+
T Consensus       243 id~~g~~~---~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         243 IEATGVPP---LAFEALPALAPNGVVILF  268 (355)
T ss_pred             EECcCCHH---HHHHHHHHccCCcEEEEE
Confidence            99998542   223333445555555544

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK10637 cysG siroheme synthase; Provisional

Probab=93.27  E-value=0.94  Score=48.18  Aligned_cols=73  Identities=10%  Similarity=0.031  Sum_probs=49.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+||.|||.|.++..=+..|.+.|  .+|+++...- +.+..+.+.+. ..+.         .-.-...+ ++++++||.
T Consensus        12 ~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~~~-i~~~---------~~~~~~~d-l~~~~lv~~   78 (457)
T PRK10637         12 DRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADAGM-LTLV---------EGPFDESL-LDTCWLAIA   78 (457)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhCCC-EEEE---------eCCCChHH-hCCCEEEEE
Confidence            579999999999999999999999  8999997652 23444444331 1110         00002233 688999999


Q ss_pred             cCccccH
Q 012720          206 AMPVQFS  212 (458)
Q Consensus       206 aVp~~~v  212 (458)
                      |+.+..+
T Consensus        79 at~d~~~   85 (457)
T PRK10637         79 ATDDDAV   85 (457)
T ss_pred             CCCCHHH
Confidence            9987543

>PRK07109 short chain dehydrogenase; Provisional

Probab=93.24  E-value=0.64  Score=47.14  Aligned_cols=42  Identities=26%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++++|+++..+.+.+
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~   50 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRG--AKVVLLARGEEGLEALAA   50 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            367999996 999999999999999  999999999877665543

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=93.21  E-value=0.16  Score=51.70  Aligned_cols=104  Identities=16%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC----HHHHHHHHhhcCC-CccC-----CCCCC---CCceEEe--C
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD----PAVCQSINEKHCN-CRYF-----PEQKL---PENVIAT--T  191 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~----~~~~e~l~~~g~~-~~~~-----~~~~l---~~~i~a~--~  191 (458)
                      ++||+|.|+|++|..+.+.|.+.+++.++.++..+    .+.+..+-+.--. -++.     .+..+   -+.+.+.  .
T Consensus         1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (336)
T PRK13535          1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER   80 (336)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence            46999999999999999999876422355555322    2333333221100 0000     01111   1223333  2


Q ss_pred             CHHhhc---CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          192 DAKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       192 ~~~ea~---~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++++.-   .++|+||.|+.....++.....   +..|..+|.++
T Consensus        81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~---l~aGAk~V~iS  122 (336)
T PRK13535         81 DIASLPWRELGVDVVLDCTGVYGSREDGEAH---IAAGAKKVLFS  122 (336)
T ss_pred             CcccCcccccCCCEEEEccchhhhHHHHHHH---HHcCCEEEEec
Confidence            555432   4899999999987666555432   33465555555

>PRK07890 short chain dehydrogenase; Provisional

Probab=93.19  E-value=0.65  Score=44.48  Aligned_cols=42  Identities=21%  Similarity=0.258  Sum_probs=35.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+|+++..+.+.+
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   47 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAA   47 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            468999996 999999999999999  999999999876655543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=93.18  E-value=0.25  Score=57.13  Aligned_cols=35  Identities=31%  Similarity=0.408  Sum_probs=32.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +.+||+|||+|.-|...|..|++.|  ++|+++++.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEeccc
Confidence            4679999999999999999999999  9999999764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=93.18  E-value=0.11  Score=53.99  Aligned_cols=35  Identities=26%  Similarity=0.520  Sum_probs=31.4

Q ss_pred             cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      |...+|.|||+|..|.++|..|+++|  ++|+++++.
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~   36 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ   36 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence            33458999999999999999999999  999999985

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.18  E-value=0.19  Score=50.25  Aligned_cols=74  Identities=20%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .++|+||| ...+|.++|..|.+.|.  +..|+++....                            .++++.++.||+|
T Consensus       161 Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIv  212 (297)
T PRK14168        161 GAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS----------------------------KNLARHCQRADIL  212 (297)
T ss_pred             CCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC----------------------------cCHHHHHhhCCEE
Confidence            57999999 58899999999998721  17888764321                            1566778999999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |.++.-..+   +  -..++++|++||++.
T Consensus       213 VsAvGkp~~---i--~~~~ik~gavVIDvG  237 (297)
T PRK14168        213 IVAAGVPNL---V--KPEWIKPGATVIDVG  237 (297)
T ss_pred             EEecCCcCc---c--CHHHcCCCCEEEecC
Confidence            999974432   1  135678899999875

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.16  E-value=0.96  Score=45.06  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|+|+|.+|+.+|.+|+.+|. ..|+++|.+.
T Consensus        19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~   53 (286)
T cd01491          19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKP   53 (286)
T ss_pred             cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCc
Confidence            3689999999999999999999995 5788998664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK07024 short chain dehydrogenase; Provisional

Probab=93.15  E-value=0.56  Score=45.17  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=36.1

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +|+|.|.| .|.+|..++..|++.|  ++|++.+|+.+..+++.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~   44 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQG--ATLGLVARRTDALQAFAA   44 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            46899999 5999999999999999  999999999877665543

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=93.14  E-value=4.3  Score=40.01  Aligned_cols=165  Identities=16%  Similarity=0.201  Sum_probs=91.3

Q ss_pred             CceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEE
Q 012720          185 ENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS  263 (458)
Q Consensus       185 ~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~  263 (458)
                      -++++++|-.|+++++|++|+.+|-- ...++++.+.+++++|.+|.+.= ++.+-   .+...+++ +++.  ++.+.+
T Consensus       127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tC-TIpt~---~ly~~le~-l~R~--DvgIsS  199 (342)
T PRK00961        127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHAC-TIPTT---KFAKIFKD-LGRD--DLNVTS  199 (342)
T ss_pred             cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccc-cCCHH---HHHHHHHH-hCcc--cCCeec
Confidence            35778877778899999999999964 47889999999999998875532 35442   34444544 3432  222221


Q ss_pred             C-cccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHH--HHHHHHHHHHHHHHHHhc----cc-C
Q 012720          264 G-PSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS-DVTGVE--IAGALKNVLAIAAGIVVG----MN-L  334 (458)
Q Consensus       264 g-P~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~--~~kalkNi~ai~~G~~~~----~k-l  334 (458)
                      - |...-+ ..|+.. ..-+-.+++..+++.++.++.+...+..+ |+.+..  .++++--+.  ..|+++=    .+ +
T Consensus       200 ~HPaaVPg-t~Gq~~-i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv~--~aGiL~Y~~~~tqIl  275 (342)
T PRK00961        200 YHPGAVPE-MKGQVY-IAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAIV--YAGILAYRDAVTQIL  275 (342)
T ss_pred             cCCCCCCC-CCCcee-cccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence            1 111100 012211 11122478999999999998887766543 333321  122211110  1132211    11 2


Q ss_pred             CCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012720          335 GNN--SMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       335 ~~n--~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      +..  .........+.-+..|-+..|++
T Consensus       276 gAP~~mie~qa~eaL~tmasLme~~GI~  303 (342)
T PRK00961        276 GAPADFAQMMADEALTQITALMREEGID  303 (342)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            222  22344556666777777877876

>PTZ00188 adrenodoxin reductase; Provisional

Probab=93.14  E-value=0.15  Score=54.34  Aligned_cols=82  Identities=15%  Similarity=0.111  Sum_probs=50.6

Q ss_pred             CCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHHHHHhhcCCCcc---------------CCCCCCCCceEEe
Q 012720          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQSINEKHCNCRY---------------FPEQKLPENVIAT  190 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~---------------~~~~~l~~~i~a~  190 (458)
                      .+||+|||+|.-|.+.|..|+ +.|  ++|++|++.+..--.+ ..|..+.+               .++.++..++.+-
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLv-R~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG  115 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLI-RYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG  115 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEE-EEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence            579999999999999999775 557  9999999886321000 00110000               0111111233432


Q ss_pred             C--CHHhhcCCCCEEEEcCcccc
Q 012720          191 T--DAKTALLGADYCLHAMPVQF  211 (458)
Q Consensus       191 ~--~~~ea~~~aDiVilaVp~~~  211 (458)
                      .  +.++..+..|.||+++-+..
T Consensus       116 ~Dvt~eeL~~~YDAVIlAtGA~~  138 (506)
T PTZ00188        116 VDLKMEELRNHYNCVIFCCGASE  138 (506)
T ss_pred             CccCHHHHHhcCCEEEEEcCCCC
Confidence            3  46676678999999998653

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=93.12  E-value=0.73  Score=40.55  Aligned_cols=96  Identities=14%  Similarity=0.054  Sum_probs=72.3

Q ss_pred             hhcCCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       123 ~~~~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      ...+.++|+++|+    ..-+...+..|.++|  ++|+-++....- +.+.  |              -++..++.|.-+
T Consensus        12 iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~G--Y~ViPVNP~~~~-~eiL--G--------------~k~y~sL~dIpe   72 (140)
T COG1832          12 ILKSAKTIAVVGASDKPDRPSYRVAKYLQQKG--YRVIPVNPKLAG-EEIL--G--------------EKVYPSLADIPE   72 (140)
T ss_pred             HHHhCceEEEEecCCCCCccHHHHHHHHHHCC--CEEEeeCcccch-HHhc--C--------------chhhhcHHhCCC
Confidence            3445689999998    568889999999999  999988885432 2222  1              234457878767


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcch
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      ..|+|-+..++..+.+++++....   +..++=+|-|+.+++
T Consensus        73 ~IDiVdvFR~~e~~~~i~~eal~~---~~kv~W~QlGi~n~e  111 (140)
T COG1832          73 PIDIVDVFRRSEAAPEVAREALEK---GAKVVWLQLGIRNEE  111 (140)
T ss_pred             CCcEEEEecChhhhHHHHHHHHhh---CCCeEEEecCcCCHH
Confidence            899999999999999998886553   355666888998764

>PRK05854 short chain dehydrogenase; Provisional

Probab=93.09  E-value=0.75  Score=46.11  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .+++.|.|+ |.+|..+|..|+++|  ++|++.+|+.++.+...
T Consensus        14 gk~~lITGas~GIG~~~a~~La~~G--~~Vil~~R~~~~~~~~~   55 (313)
T PRK05854         14 GKRAVVTGASDGLGLGLARRLAAAG--AEVILPVRNRAKGEAAV   55 (313)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            467889995 889999999999999  99999999987665543

>PRK05693 short chain dehydrogenase; Provisional

Probab=93.06  E-value=0.12  Score=50.43  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=35.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      |+++.|.|+ |.+|..++..|++.|  ++|++.+|+.+..+.+..
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   43 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAG--YEVWATARKAEDVEALAA   43 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            357889996 999999999999999  999999999877665543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.04  E-value=0.69  Score=44.32  Aligned_cols=42  Identities=19%  Similarity=0.217  Sum_probs=35.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..++..|+++|  ++|++++|+++..+.+.+
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~   53 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGAG--AHVLVNGRNAATLEAAVA   53 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence            578999996 999999999999999  999999999876655443

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.02  E-value=0.11  Score=53.98  Aligned_cols=35  Identities=31%  Similarity=0.619  Sum_probs=32.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .++|.|||+|.-|.++|..|+++|  ++|+++++.+.
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   52 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPA   52 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCc
Confidence            568999999999999999999999  99999997653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=93.00  E-value=0.28  Score=52.32  Aligned_cols=34  Identities=35%  Similarity=0.439  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|+|||+|..|...|..|++.|  ++|+++++.+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~  176 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAG--HKVTVFERAD  176 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence            579999999999999999999999  9999999764

>PRK07208 hypothetical protein; Provisional

Probab=93.00  E-value=0.12  Score=55.03  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=33.5

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |+++++|.|||+|--|.+.|..|+++|  ++|+++.+..
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~   37 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADP   37 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence            566789999999999999999999999  9999998765

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=92.98  E-value=0.12  Score=53.46  Aligned_cols=33  Identities=33%  Similarity=0.468  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      +++|.|||+|..|.++|..|+++|  ++|+++++.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence            468999999999999999999999  999999997

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=92.98  E-value=0.77  Score=44.04  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=35.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   51 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAA   51 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            468999996 999999999999999  99999999987655443

>PRK08013 oxidoreductase; Provisional

Probab=92.97  E-value=0.12  Score=53.76  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=31.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .+|.|||+|..|.++|..|++.|  ++|+++++.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence            57999999999999999999999  99999998754

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.94  E-value=0.18  Score=53.27  Aligned_cols=36  Identities=33%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      +|||+|+|+|.-|.+.|+.|.+.|  ++|+++|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCc
Confidence            689999999999999999999999  999999966543

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.94  E-value=0.12  Score=50.85  Aligned_cols=34  Identities=15%  Similarity=0.335  Sum_probs=31.2

Q ss_pred             eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       129 kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      +|.|+|+ |.+|..++..|.+.|  ++|++..|+++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g--~~V~~~~R~~~~   35 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAAS--VPFLVASRSSSS   35 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCC--CcEEEEeCCCcc
Confidence            5889997 999999999999999  999999999764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK05867 short chain dehydrogenase; Provisional

Probab=92.93  E-value=0.64  Score=44.57  Aligned_cols=42  Identities=12%  Similarity=0.241  Sum_probs=36.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|..++..|++.|  ++|.+.+|+.+..+.+.+
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   51 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAG--AQVAIAARHLDALEKLAD   51 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence            467999997 899999999999999  999999999877665543

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.93  E-value=0.23  Score=49.45  Aligned_cols=74  Identities=26%  Similarity=0.291  Sum_probs=55.3

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .++|+||| ...+|.++|..|.++|.  +..|+++....                            .++.+.++.||+|
T Consensus       157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADIv  208 (293)
T PRK14185        157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADII  208 (293)
T ss_pred             CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCEE
Confidence            57999999 57899999999998731  26888764322                            1566677899999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |.++....+   +.  ..++++|++||++.
T Consensus       209 IsAvGkp~~---i~--~~~vk~gavVIDvG  233 (293)
T PRK14185        209 IAALGQPEF---VK--ADMVKEGAVVIDVG  233 (293)
T ss_pred             EEccCCcCc---cC--HHHcCCCCEEEEec
Confidence            999985443   11  35678999999875

>PRK08251 short chain dehydrogenase; Provisional

Probab=92.92  E-value=0.99  Score=42.96  Aligned_cols=42  Identities=19%  Similarity=0.346  Sum_probs=35.9

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.| .|.+|..++..|++.|  ++|++.+|+++..+.+..
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~   44 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKG--RDLALCARRTDRLEELKA   44 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            35789999 5999999999999999  999999999877665543

>PRK07814 short chain dehydrogenase; Provisional

Probab=92.91  E-value=0.7  Score=44.71  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|..++..|++.|  ++|++++|+.+..+.+.+
T Consensus        10 ~~~vlItGasggIG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~   52 (263)
T PRK07814         10 DQVAVVTGAGRGLGAAIALAFAEAG--ADVLIAARTESQLDEVAE   52 (263)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            478999996 689999999999999  999999999876655543

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.90  E-value=0.1  Score=55.22  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=32.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .++++|||||.-|.+.|+.|.+.|  ++|+++.|+..
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~   40 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDD   40 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCC--CCceEEEecCC
Confidence            578999999999999999999999  99999988764

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.88  E-value=0.79  Score=43.94  Aligned_cols=41  Identities=22%  Similarity=0.244  Sum_probs=35.5

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +++.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.+
T Consensus         7 k~~lItGas~giG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~   48 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAREG--AKVVVGARRQAELDQLVA   48 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            57999996 899999999999999  999999999877666543

>PLN02650 dihydroflavonol-4-reductase

Probab=92.87  E-value=0.24  Score=50.28  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .++|.|.|+ |-+|+.++..|++.|  ++|++++|+.+..+.+..........+... +...+.-....+++++++|+||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERG--YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCC--CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            468999996 999999999999999  999999988655444322100000000000 0001111123456677899998


Q ss_pred             EcCc
Q 012720          205 HAMP  208 (458)
Q Consensus       205 laVp  208 (458)
                      .+..
T Consensus        83 H~A~   86 (351)
T PLN02650         83 HVAT   86 (351)
T ss_pred             EeCC
Confidence            8753

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=92.87  E-value=0.64  Score=45.45  Aligned_cols=102  Identities=13%  Similarity=0.145  Sum_probs=62.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc----CCC-----CeEEEEeCCH------HHHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK----KSQ-----LKVYMLMRDP------AVCQSINEKHCNCRYFPEQKLPENVIATT  191 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a----G~~-----~~V~v~~r~~------~~~e~l~~~g~~~~~~~~~~l~~~i~a~~  191 (458)
                      ..||.|+|+|+-|..+|..|.+.    |..     .+++++|+.-      +.....++.-....      -+  .....
T Consensus        25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~------~~--~~~~~   96 (255)
T PF03949_consen   25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKT------NP--EKDWG   96 (255)
T ss_dssp             G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSS------ST--TT--S
T ss_pred             HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccC------cc--ccccc
Confidence            46899999999999999999998    842     4788888762      11111111100000      00  00114


Q ss_pred             CHHhhcCCC--CEEEEcC--ccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          192 DAKTALLGA--DYCLHAM--PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       192 ~~~ea~~~a--DiVilaV--p~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ++.|+++.+  |++|=+.  +.-..+++++.+.++.+ .-+|..++|-..
T Consensus        97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e-rPIIF~LSNPt~  145 (255)
T PF03949_consen   97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE-RPIIFPLSNPTP  145 (255)
T ss_dssp             SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS-SEEEEE-SSSCG
T ss_pred             CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC-CCEEEECCCCCC
Confidence            888999888  9998775  34568889888877654 456777888554

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK05884 short chain dehydrogenase; Provisional

Probab=92.86  E-value=0.24  Score=46.95  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=35.7

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ||+.|.|+ |.+|..++..|++.|  ++|++.+|++++++.+.+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g--~~v~~~~r~~~~~~~~~~   42 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDG--HKVTLVGARRDDLEVAAK   42 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            57999996 999999999999999  999999999887766543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.83  E-value=0.74  Score=44.29  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=35.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+|+.+..+.+.
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   53 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAG--ARVVLSARKAEELEEAA   53 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            478999995 999999999999999  99999999987665544

>PRK06949 short chain dehydrogenase; Provisional

Probab=92.82  E-value=0.85  Score=43.65  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|++++++.+..
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~   51 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAG--AKVVLASRRVERLKELRA   51 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            478999996 999999999999999  899999999887766644

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=92.82  E-value=0.12  Score=53.83  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=31.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~  163 (458)
                      |||+|||+|.-|.++|..|+++|  + +|+++.|.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g--~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHS--HLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC--CCCEEEEecCCc
Confidence            68999999999999999999987  5 9999998764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.82  E-value=0.37  Score=50.99  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ||.|||+|..|.+.|+.|++.|  ++|+++|+..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCC
Confidence            7999999999999999999999  9999999764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=92.82  E-value=0.6  Score=44.30  Aligned_cols=39  Identities=18%  Similarity=0.180  Sum_probs=33.8

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~  167 (458)
                      .++|.|.| .|.+|..++..|+++|  ++|++.+|+.+....
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g--~~V~~~~r~~~~~~~   45 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADG--AEVIVVDICGDDAAA   45 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHH
Confidence            46899999 5999999999999999  999999999765443

>PRK06194 hypothetical protein; Provisional

Probab=92.76  E-value=0.69  Score=45.21  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=34.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      +++|.|.|+ |.+|..++..|++.|  ++|++++|+.+..+.+.
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   47 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALG--MKLVLADVQQDALDRAV   47 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence            468999995 899999999999999  99999999876655443

>PRK08643 acetoin reductase; Validated

Probab=92.76  E-value=0.8  Score=43.89  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=34.7

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +++.|+|+ |.+|..++..|++.|  ++|.+.+|+.+..+.+..
T Consensus         3 k~~lItGas~giG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~   44 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDG--FKVAIVDYNEETAQAAAD   44 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            57888885 899999999999999  999999999876665543

>PRK07045 putative monooxygenase; Reviewed

Probab=92.75  E-value=0.13  Score=53.06  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=32.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .++|.|||+|..|...|..|+++|  ++|+++.+.++
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~   39 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARG--HSVTVVERAAR   39 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCc
Confidence            468999999999999999999999  99999997764

>PRK07102 short chain dehydrogenase; Provisional

Probab=92.68  E-value=0.27  Score=46.85  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=35.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      ||+|.|.|+ |.+|..++..|+++|  ++|++.+|+++..+.+.
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~   42 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAG--ARLYLAARDVERLERLA   42 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHH
Confidence            468999995 999999999999999  99999999987665543

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.68  E-value=0.24  Score=50.36  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=48.2

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .|||.|.| +|.+|+.++..|++.|  ++|++.+|+.+..+.+...-...   +... +...+.-.....+++++.|+||
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDPAKSLHLLSKWKEG---DRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHhhccC---CeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            47999999 4999999999999999  99999999876555443221000   0000 0001110112345567789988


Q ss_pred             EcCc
Q 012720          205 HAMP  208 (458)
Q Consensus       205 laVp  208 (458)
                      .+..
T Consensus        85 h~A~   88 (353)
T PLN02896         85 HVAA   88 (353)
T ss_pred             ECCc
Confidence            8764

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.65  E-value=0.86  Score=43.59  Aligned_cols=41  Identities=29%  Similarity=0.296  Sum_probs=35.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|.+.+|+++..+.+.
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~   48 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREG--AKVVVADRDAAGGEETV   48 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            368999996 899999999999999  89999999987665544

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.64  E-value=1.1  Score=43.62  Aligned_cols=42  Identities=24%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.+
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~   47 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALG--ARVAIGDLDEALAKETAA   47 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            468999996 999999999999999  999999999887665543

>PRK06197 short chain dehydrogenase; Provisional

Probab=92.62  E-value=0.95  Score=44.94  Aligned_cols=40  Identities=25%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l  168 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+|+.+..+..
T Consensus        16 ~k~vlItGas~gIG~~~a~~l~~~G--~~vi~~~r~~~~~~~~   56 (306)
T PRK06197         16 GRVAVVTGANTGLGYETAAALAAKG--AHVVLAVRNLDKGKAA   56 (306)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence            468999996 999999999999999  9999999998765543

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=92.59  E-value=1.1  Score=43.23  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=36.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|..++..|+++|  ++|++.+|+++.++.+.+
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   48 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEG--ARVAVLERSAEKLASLRQ   48 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            468999996 889999999999999  999999999887766654

>PRK08267 short chain dehydrogenase; Provisional

Probab=92.59  E-value=0.28  Score=47.23  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=36.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      |+++.|+|+ |.+|..++..|++.|  ++|.+++|+.+..+.+.+
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   43 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEG--WRVGAYDINEAGLAALAA   43 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence            357999995 999999999999999  999999999887776654

>PRK07806 short chain dehydrogenase; Provisional

Probab=92.52  E-value=0.4  Score=45.68  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=30.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+.
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G--~~V~~~~r~~   40 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAG--AHVVVNYRQK   40 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCC--CEEEEEeCCc
Confidence            368999996 999999999999999  9999998875

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.51  E-value=1  Score=43.41  Aligned_cols=41  Identities=17%  Similarity=0.160  Sum_probs=34.7

Q ss_pred             CCeEEEECc-c-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .+++.|.|+ | .+|..++..|++.|  ++|++.+|+.+..+...
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~   59 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETA   59 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            468999997 6 69999999999999  89999999887665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
1evy_A	366	Crystal Structure Of Leishmania Mexicana Glycerol-3		2e-49
3k96_A	356	2.1 Angstrom Resolution Crystal Structure Of Glycer		9e-47
1z82_A	335	Crystal Structure Of Glycerol-3-Phosphate Dehydroge		2e-40
1x0x_A	354	Co-Structure Of Homo Sapiens Glycerol-3-Phosphate D		2e-27
1wpq_A	349	Ternary Complex Of Glycerol 3-Phosphate Dehydrogena		3e-27
1x0v_A	354	Crystal Structure Of Homo Sapien Glycerol-3-Phospha		4e-27
2pla_A	349	Crystal Structure Of Human Glycerol-3-Phosphate Deh		4e-24
1txg_A	335	Structure Of Glycerol-3-Phosphate Dehydrogenase Fro		2e-21
1yj8_A	375	Initial Structural Analysis Of Plasmodium Falciparu		4e-18
4fgw_A	391	Structure Of Glycerol-3-phosphate Dehydrogenase, Gp		4e-18

>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-phosphate Dehydrogenase Length = 366

Iteration: 1
 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 200/347 (57%), Gaps = 12/347 (3%)
Query: 114 TWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173
           T +  AK ++L   NK VV G G+FGTA+A  ++ K  ++ V+ +  +    + +NEK  
Sbjct: 3   TKQHSAKDELL-YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEV--RLVNEKRE 59
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEG-----ISDYVDPGLP 228
           N  +    +L  N+  T+D + A  GA+  L  +P QF   F E      I+   +  +P
Sbjct: 60  NVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVP 119
Query: 229 FISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288
            +  +KG+E +TL+  ++II + L +P      L+GPSFA+E+   + T + +AS D  +
Sbjct: 120 VLVCTKGIERSTLKFPAEIIGEFLPSPL--LSVLAGPSFAIEVATGVFTCVSIASADINV 177
Query: 289 ANAVQQLLAS--KHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346
           A  +Q+++++  +      ++D  G E+A A+KNVLAI +G+  G+ +G N+ AAL+ +G
Sbjct: 178 ARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRG 237
Query: 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
             EIR L   +G   + + GL+G GD+ LTC   LSRN TVG +LG G  +++I  +   
Sbjct: 238 LLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 297
Query: 407 VAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMS 453
           VAEGV+TA  ++ LA++  VKMP+   +  I+  +  P+ A+ +L+S
Sbjct: 298 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLS 344

>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella Burnetii Length = 356

Iteration: 1
 Score =  184 bits (467), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 182/327 (55%), Gaps = 11/327 (3%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA 189
           + +LG GS+GTA+A  +A K  +++++    D      +  +  N RY P    PE + A
Sbjct: 32  IAILGAGSWGTALALVLARKGQKVRLWSYESDH--VDEMQAEGVNNRYLPNYPFPETLKA 89
Query: 190 TTDAKTALLGADYCLHAMPVQFSSSFLEGISD---YVDPGLPFISLSKGLELNTLRMMSQ 246
             D K +L G    L  +P   S +F E I+     +D        +KGL   + R++ +
Sbjct: 90  YCDLKASLEGVTDILIVVP---SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHE 145
Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
           ++   L   + P   +SGPS A E+   LPTA+ +AS + + +  + + L  +  R+  +
Sbjct: 146 VVATEL--GQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKN 203
Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG 366
            D+ GVE+ G++KN+LAIA GI  G+ LG+N+ AAL+ +G +E+  L +  G K  T+TG
Sbjct: 204 DDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG 263
Query: 367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNV 426
           L+G GD++LTC  N SRNR  G+ LG G    +   ++ Q  EG+     V ALAQK+ +
Sbjct: 264 LAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAI 323
Query: 427 KMPVLTAVARIIDNELTPKKAVLELMS 453
           +MP+   V RI+  +L P++AV EL+ 
Sbjct: 324 EMPLTFQVHRILHEDLDPQQAVQELLE 350

>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Tm0378) From Thermotoga Maritima At 2.00 A Resolution Length = 335

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 166/310 (53%), Gaps = 15/310 (4%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           +  VLG GS+GT  A  +     +  V +  R   +   IN  H +  Y  E K+   V 
Sbjct: 16  RFFVLGAGSWGTVFAQXLHENGEE--VILWARRKEIVDLINVSHTSP-YVEESKI--TVR 70
Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           AT D +  +   D  + A+PVQ+    L  +   V P    ++LSKG+E+ T + +S+I+
Sbjct: 71  ATNDLEE-IKKEDILVIAIPVQYIREHLLRLP--VKPSX-VLNLSKGIEIKTGKRVSEIV 126
Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L  P   +  LSGPS A E+  KLPTA+ +A ++ K    +Q+ +++++ R+ T  D
Sbjct: 127 EEILGCP---YAVLSGPSHAEEVAKKLPTAVTLAGENSK---ELQKRISTEYFRVYTCED 180
Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVEIAGALKNV+AIAAGI+ G    +N+ AAL  +G  EI       GA   T  GL+
Sbjct: 181 VVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGXFFGADQKTFXGLA 240
Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
           G GD+ +TC    SRNR  G  +  G     +L S NQV EG  T  AV  +A++  +  
Sbjct: 241 GIGDLXVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVXKIAKENKIDX 300
Query: 429 PVLTAVARII 438
           P+   V R++
Sbjct: 301 PISEEVYRVV 310

>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Complex With Nad Length = 354

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 160/335 (47%), Gaps = 33/335 (9%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--------------QSINEKH 172
           + KV ++G G++G+A+A  V    +QL  +    DP V               + IN +H
Sbjct: 8   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQF----DPRVTMWVFEEDIGGKKLTEIINTQH 63
Query: 173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232
            N +Y P  KLP NV+A  D   A   AD  +  +P QF     + +  ++      ISL
Sbjct: 64  ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL 123
Query: 233 SKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLAN 290
            KG++   N L+++S++I + L  P      L G + A E+ ++      +  KD     
Sbjct: 124 IKGVDEGPNGLKLISEVIGERLGIPMS---VLMGANIASEVADEKFCETTIGCKDPAQGQ 180
Query: 291 AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
            +++L+ + + RI+   +V  VEI GALKNV+A+ AG   G+  G+N+ AA++  G  E+
Sbjct: 181 LLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEM 240
Query: 351 RWLATKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM-- 404
              A    + P   AT     G  D++ TC+    RNR V      +G+ ++ +   +  
Sbjct: 241 IAFAKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLN 298
Query: 405 NQVAEGVSTAGAVIALAQKYNV--KMPVLTAVARI 437
            Q  +G  TA  + ++ Q   +  K P+  AV ++
Sbjct: 299 GQKLQGPETARELYSILQHKGLVDKFPLFMAVYKV 333

>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And Dihydroxyactone Length = 349

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 160/335 (47%), Gaps = 33/335 (9%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--------------QSINEKH 172
           + KV ++G G++G+A+A  V    +QL  +    DP V               + IN +H
Sbjct: 3   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQF----DPRVTMWVFEEDIGGKKLTEIINTQH 58
Query: 173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232
            N +Y P  KLP NV+A  D   A   AD  +  +P QF     + +  ++      ISL
Sbjct: 59  ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANPTGISL 118
Query: 233 SKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLAN 290
            KG++   N L+++S++I + L  P      L G + A E+ ++      +  KD     
Sbjct: 119 IKGVDEGPNGLKLISEVIGERLGIPMS---VLMGANIASEVADEKFCETTIGCKDPAQGQ 175
Query: 291 AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
            +++L+ + + RI+   +V  VEI GALKNV+A+ AG   G+  G+N+ AA++  G  E+
Sbjct: 176 LLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEM 235
Query: 351 RWLATKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM-- 404
              A    + P   AT     G  D++ TC+    RNR V      +G+ ++ +   +  
Sbjct: 236 IAFAKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLN 293
Query: 405 NQVAEGVSTAGAVIALAQKYNV--KMPVLTAVARI 437
            Q  +G  TA  + ++ Q   +  K P+  AV ++
Sbjct: 294 GQKLQGPETARELYSILQHKGLVDKFPLFMAVYKV 328

>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1 Length = 354

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 33/335 (9%)
Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC--------------QSINEKH 172
           + KV ++G G++G+A+A  V    +QL  +    DP V               + IN +H
Sbjct: 8   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQF----DPRVTXWVFEEDIGGKKLTEIINTQH 63
Query: 173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL 232
            N +Y P  KLP NV+A  D   A   AD  +  +P QF     + +  ++      ISL
Sbjct: 64  ENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL 123
Query: 233 SKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLAN 290
            KG++   N L+++S++I + L  P      L G + A E+ ++      +  KD     
Sbjct: 124 IKGVDEGPNGLKLISEVIGERLGIPXS---VLXGANIASEVADEKFCETTIGCKDPAQGQ 180
Query: 291 AVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
            +++L  + + RI+   +V  VEI GALKNV+A+ AG   G+  G+N+ AA++  G  E 
Sbjct: 181 LLKELXQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLXEX 240
Query: 351 RWLATKMGAKP---ATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM-- 404
              A    + P   AT     G  D++ TC+    RNR V      +G+ ++ +   +  
Sbjct: 241 IAFAKLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLN 298
Query: 405 NQVAEGVSTAGAVIALAQKYNV--KMPVLTAVARI 437
            Q  +G  TA  + ++ Q   +  K P+  AV ++
Sbjct: 299 GQKLQGPETARELYSILQHKGLVDKFPLFXAVYKV 333

>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate Dehydrogenase 1-Like Protein Length = 349

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 165/348 (47%), Gaps = 29/348 (8%)
Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLK-----VYMLMRDPAV-----CQSINEKHCNCRYF 178
           KV ++G G++G+A+A  + N   +L+     V M + +  V        IN  H N +Y 
Sbjct: 7   KVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDHENVKYL 66
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL 238
           P  KLPENV+A ++   A+  AD  +  +P QF     + I+  V      I+L KG++ 
Sbjct: 67  PGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGIDE 126
Query: 239 --NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLL 296
               L+++S II + +         L G + A E+  +      + SK  +     ++LL
Sbjct: 127 GPEGLKLISDIIREKMG---IDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFKELL 183
Query: 297 ASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA-- 354
            + + RI+   D   VE+ GALKN++A+ AG   G+  G+N+ AA++  G  E+   A  
Sbjct: 184 QTPNFRITVVDDADTVELCGALKNIVAVGAGFCDGLRCGDNTKAAVIRLGLMEMIAFARI 243
Query: 355 -TKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQVAEG 410
             K     AT     G  D++ TC+    RNR V      +G+ ++++   M   Q  +G
Sbjct: 244 FCKGQVSTATFLESCGVADLITTCYG--GRNRRVAEAFARTGKTIEELEKEMLNGQKLQG 301
Query: 411 VSTAGAVIALAQKYNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456
             T+  V  + ++  +  K P+ TAV +I        + V E++S  Q
Sbjct: 302 PQTSAEVYRILKQKGLLDKFPLFTAVYQI----CYESRPVQEMLSCLQ 345

>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From Archaeoglobus Fulgidus Length = 335

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 167/349 (47%), Gaps = 41/349 (11%)
Query: 130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR----------YFP 179
           V +LG G+ G+A++  + +  ++++++    D  + +SI+    + R          ++P
Sbjct: 3   VSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP 62
Query: 180 EQ--KLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISD-YVDPGLPFISLSKGL 236
           EQ  K  EN      A+  LLG       +PV   S  L  + D Y+      + +SKGL
Sbjct: 63  EQLEKCLEN------AEVVLLGVS-TDGVLPVM--SRILPYLKDQYI------VLISKGL 107
Query: 237 --ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
               N++  + + + +   + R+  +A++GP+ A E+  ++PT +V +S     AN +++
Sbjct: 108 IDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKE 167
Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSE 349
           +  +++  +  ++D+ G EI  ALKNV +IA   + G         +N+   +  +  +E
Sbjct: 168 IFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINE 227
Query: 350 IRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ--- 406
           +  L   +G    T  GLSG GD++ T      RN  +G  LG G  +D+ +  + +   
Sbjct: 228 MAELIEILGGDRETAFGLSGFGDLIATF--RGGRNGMLGELLGKGLSIDEAMEELERRGV 285
Query: 407 -VAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL 454
            V EG  TA     L+ K N    +L ++ R++   L  ++ + EL + 
Sbjct: 286 GVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYEGLKVEEVLFELATF 334

>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Glycerol-3- Phosphate Dehydrogenase Length = 375

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 19/238 (7%)
Query: 129 KVVVLGGGSFGTAMAAHVA-NKKSQL----KVYMLMRDPAV-----CQSINEKHCNCRYF 178
           K+ +LG G++ +A++  V  N K+      +V M +RD  V        IN KH N +Y 
Sbjct: 23  KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYL 82
Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDY----VDPGLPFISLSK 234
               LP N++A +D  + +  AD  +  +P Q+  S L  I +     +      ISL+K
Sbjct: 83  KGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTK 142
Query: 235 GL--ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292
           G   + N +++ S  I   L  P     ALSG + A+++  +  +   +   D+      
Sbjct: 143 GFIVKKNQMKLCSNYISDFLNIPCS---ALSGANIAMDVAMENFSEATIGGNDKDSLVIW 199
Query: 293 QQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI 350
           Q++    + +I+  ++   VEI GALKN++ +A G   G+NL  NS +A++  G +E+
Sbjct: 200 QRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM 257

>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1, From Sacharomyces Cerevisiae Length = 391

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 125 ERTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-----MLMRDPAV-----CQSINEKHC 173
           E+  KV V+G G++GT +A  VA N K   +V+     M + +  +      + IN +H 
Sbjct: 32  EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQ 91
Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS 233
           N +Y P   LP+N++A  D   ++   D  +  +P QF       +  +VD  +  IS  
Sbjct: 92  NVKYLPGITLPDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCL 151
Query: 234 KGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK------- 284
           KG E+    ++++S  I + L        ALSG + A E+  +  +   VA         
Sbjct: 152 KGFEVGAKGVQLLSSYITEELGIQCG---ALSGANIATEVAQEHWSETTVAYHIPKDFRG 208
Query: 285 -----DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSM 339
                D K+  A   L    +  +S   DV G+ I GALKNV+A+  G V G+  GNN+ 
Sbjct: 209 EGKDVDHKVLKA---LFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNAS 265
Query: 340 AALVAQGCSEI 350
           AA+   G  EI
Sbjct: 266 AAIQRVGLGEI 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	1e-146
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	1e-140
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	1e-127
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	1e-124
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	1e-120
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	1e-115
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	2e-37
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	2e-18
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	8e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vjt_A	483	Alpha-glucosidase; TM0752, structural genomics, JC	2e-05
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	5e-05

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Length = 366

 Score =  420 bits (1082), Expect = e-146
 Identities = 116/347 (33%), Positives = 194/347 (55%), Gaps = 11/347 (3%)

Query: 114 TWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC 173
           + +  +  D L   NK VV G G+FGTA+A  ++ K  +  V +   +    + +NEK  
Sbjct: 2   STKQHSAKDELLYLNKAVVFGSGAFGTALAMVLSKKCRE--VCVWHMNEEEVRLVNEKRE 59

Query: 174 NCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYV-----DPGLP 228
           N  +    +L  N+  T+D + A  GA+  L  +P QF   F E     +     +  +P
Sbjct: 60  NVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVP 119

Query: 229 FISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKL 288
            +  +KG+E +TL+  ++II + L  P      L+GPSFA+E+   + T + +AS D  +
Sbjct: 120 VLVCTKGIERSTLKFPAEIIGEFL--PSPLLSVLAGPSFAIEVATGVFTCVSIASADINV 177

Query: 289 ANAVQQLLAS--KHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG 346
           A  +Q+++++  +      ++D  G E+A A+KNVLAI +G+  G+ +G N+ AAL+ +G
Sbjct: 178 ARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRG 237

Query: 347 CSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ 406
             EIR L   +G   + + GL+G GD+ LTC   LSRN TVG +LG G  +++I  +   
Sbjct: 238 LLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 297

Query: 407 VAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMS 453
           VAEGV+TA  ++ LA++  VKMP+   +  I+  +  P+ A+ +L+S
Sbjct: 298 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLS 344

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356

 Score =  404 bits (1042), Expect = e-140
 Identities = 109/329 (33%), Positives = 177/329 (53%), Gaps = 5/329 (1%)

Query: 125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
              + + +LG GS+GTA+A  +A K  +  V +   +      +  +  N RY P    P
Sbjct: 27  PFKHPIAILGAGSWGTALALVLARKGQK--VRLWSYESDHVDEMQAEGVNNRYLPNYPFP 84

Query: 185 ENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
           E + A  D K +L G    L  +P       +  +   +D        +KGL   + R++
Sbjct: 85  ETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLL 143

Query: 245 SQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIS 304
            +++   L   + P   +SGPS A E+   LPTA+ +AS + + +  + + L  +  R+ 
Sbjct: 144 HEVVATEL--GQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVY 201

Query: 305 TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI 364
            + D+ GVE+ G++KN+LAIA GI  G+ LG+N+ AAL+ +G +E+  L +  G K  T+
Sbjct: 202 KNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETL 261

Query: 365 TGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKY 424
           TGL+G GD++LTC  N SRNR  G+ LG G    +   ++ Q  EG+     V ALAQK+
Sbjct: 262 TGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKH 321

Query: 425 NVKMPVLTAVARIIDNELTPKKAVLELMS 453
            ++MP+   V RI+  +L P++AV EL+ 
Sbjct: 322 AIEMPLTFQVHRILHEDLDPQQAVQELLE 350

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335

 Score =  372 bits (958), Expect = e-127
 Identities = 114/325 (35%), Positives = 174/325 (53%), Gaps = 15/325 (4%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           +  VLG GS+GT  A  +     +  V +  R   +   IN  H +  Y  E K+   V 
Sbjct: 16  RFFVLGAGSWGTVFAQMLHENGEE--VILWARRKEIVDLINVSHTS-PYVEESKIT--VR 70

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII 248
           AT D +  +   D  + A+PVQ+    L  +          ++LSKG+E+ T + +S+I+
Sbjct: 71  ATNDLE-EIKKEDILVIAIPVQYIREHLLRL---PVKPSMVLNLSKGIEIKTGKRVSEIV 126

Query: 249 PQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD 308
            + L  P   +  LSGPS A E+  KLPTA+ +A ++   +  +Q+ +++++ R+ T  D
Sbjct: 127 EEILGCP---YAVLSGPSHAEEVAKKLPTAVTLAGEN---SKELQKRISTEYFRVYTCED 180

Query: 309 VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS 368
           V GVEIAGALKNV+AIAAGI+ G    +N+ AAL  +G  EI       GA   T  GL+
Sbjct: 181 VVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLA 240

Query: 369 GTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM 428
           G GD+M+TC    SRNR  G  +  G     +L S NQV EG  T  AV+ +A++  + M
Sbjct: 241 GIGDLMVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDM 300

Query: 429 PVLTAVARIIDNELTPKKAVLELMS 453
           P+   V R++     P +++ +LM 
Sbjct: 301 PISEEVYRVVYEGKPPLQSMRDLMR 325

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335

 Score =  362 bits (932), Expect = e-124
 Identities = 76/336 (22%), Positives = 157/336 (46%), Gaps = 15/336 (4%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
            V +LG G+ G+A++  + +  ++++++    D  + +SI+    + R   +      + 
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVK-LNGVEIF 60

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQ 246
                +  L  A+  L  +        +  I  Y+      + +SKGL    N++  + +
Sbjct: 61  WPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQ-YIVLISKGLIDFDNSVLTVPE 119

Query: 247 IIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTS 306
            + +   + R+  +A++GP+ A E+  ++PT +V +S     AN ++++  +++  +  +
Sbjct: 120 AVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVT 179

Query: 307 SDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLATKMGAKP 361
           +D+ G EI  ALKNV +IA   + G         +N+   +  +  +E+  L   +G   
Sbjct: 180 TDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDR 239

Query: 362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQ----VAEGVSTAGAV 417
            T  GLSG GD++ T      RN  +G  LG G  +D+ +  + +    V EG  TA   
Sbjct: 240 ETAFGLSGFGDLIATF--RGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKA 297

Query: 418 IALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMS 453
             L+ K N    +L ++ R++   L  ++ + EL +
Sbjct: 298 YRLSSKINADTKLLDSIYRVLYEGLKVEEVLFELAT 333

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354

 Score =  353 bits (909), Expect = e-120
 Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 25/350 (7%)

Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQL-----KVYMLMRDPAV-----CQSINEKHCNCR 176
           + KV ++G G++G+A+A  V    +QL     +V M + +  +      + IN +H N +
Sbjct: 8   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVK 67

Query: 177 YFPEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL 236
           Y P  KLP NV+A  D   A   AD  +  +P QF     + +  ++      ISL KG+
Sbjct: 68  YLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGV 127

Query: 237 ELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQ 294
           +     L+++S++I + L  P      L G + A E+ ++      +  KD      +++
Sbjct: 128 DEGPNGLKLISEVIGERLGIP---MSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKE 184

Query: 295 LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA 354
           L+ + + RI+   +V  VEI GALKNV+A+ AG   G+  G+N+ AA++  G  E+   A
Sbjct: 185 LMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA 244

Query: 355 TKMGAKPA---TITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQVA 408
               + P    T     G  D++ TC+    RNR V      +G+ ++ +   +   Q  
Sbjct: 245 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLNGQKL 302

Query: 409 EGVSTAGAVIALAQKYNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ 456
           +G  TA  + ++ Q   +  K P+  AV ++        + +  L + P+
Sbjct: 303 QGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPE 352

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Length = 375

 Score =  341 bits (877), Expect = e-115
 Identities = 80/350 (22%), Positives = 150/350 (42%), Gaps = 30/350 (8%)

Query: 129 KVVVLGGGSFGTAMAAHVANK-----KSQLKVYMLMRDPAV-----CQSINEKHCNCRYF 178
           K+ +LG G++ +A++  V          + +V M +RD  V        IN KH N +Y 
Sbjct: 23  KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYL 82

Query: 179 PEQKLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDY----VDPGLPFISLSK 234
               LP N++A +D  + +  AD  +  +P Q+  S L  I +     +      ISL+K
Sbjct: 83  KGVPLPHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTK 142

Query: 235 GL--ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAV 292
           G   + N +++ S  I   L  P     ALSG + A+++  +  +   +   D+      
Sbjct: 143 GFIVKKNQMKLCSNYISDFLNIP---CSALSGANIAMDVAMENFSEATIGGNDKDSLVIW 199

Query: 293 QQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW 352
           Q++    + +I+  ++   VEI GALKN++ +A G   G+NL  NS +A++  G +E+  
Sbjct: 200 QRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMIL 259

Query: 353 LATKM--GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG---SGEKLDDILSSM--N 405
                        +    G  DI+ +      RN             +  +++ + +   
Sbjct: 260 FGKVFFQKFNENILLESCGFADIITSFLA--GRNAKCSAEFIKSTPKKTWEELENEILKG 317

Query: 406 QVAEGVSTAGAVIALAQKYNV--KMPVLTAVARIIDNELTPKKAVLELMS 453
           Q  +G  T   V  + ++ N+  + P+ T + +I      P   +   M+
Sbjct: 318 QKLQGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISFENEDPSSLLKTFMN 367

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359

 Score =  139 bits (351), Expect = 2e-37
 Identities = 56/335 (16%), Positives = 99/335 (29%), Gaps = 33/335 (9%)

Query: 126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPE 185
            +    VLG G+ G A AA++A K     V     D    + I ++       P      
Sbjct: 3   ESKTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTA 60

Query: 186 NV-IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMM 244
           +  + T+D   A+  AD  L  +P    +S    I+ Y+  G   I L+ G     L   
Sbjct: 61  HPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEG-QLIILNPGATGGALEFR 119

Query: 245 SQIIPQALRN---------PRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQL 295
             +                         G      +   +  A + A+K       +  +
Sbjct: 120 KILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSV 179

Query: 296 LASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG---------NNSMAALVAQG 346
           L         +   T +    A+ + L          +             S+ +L  + 
Sbjct: 180 LPQ--YVAVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKV 237

Query: 347 CSEIRWLATKMGAKPATITGLSGT--GDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSM 404
            +E   +A        ++        G    T +  +  N               I  + 
Sbjct: 238 DAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNP------AYRGIAGPINLNT 291

Query: 405 NQVAEGVSTAGAVI-ALAQKYNVKMPVLTAVARII 438
               E VST    +  L +  NV  P++ AV  +I
Sbjct: 292 RYFFEDVSTGLVPLSELGRAVNVPTPLIDAVLDLI 326

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 83.6 bits (206), Expect = 2e-18
 Identities = 42/243 (17%), Positives = 73/243 (30%), Gaps = 29/243 (11%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV- 187
           K+ VLG G+ G  MA  +A      +V +  RDP    +  E          Q LPE+  
Sbjct: 21  KIAVLGTGTVGRTMAGALA--DLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPH 78

Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI 247
           +          GA+  ++A     S + L         G   + ++  L+ +     +  
Sbjct: 79  VHLAAFADVAAGAELVVNATEGASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLN 138

Query: 248 IPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
                          +  S   ++    P A VV +    L      L+           
Sbjct: 139 PV-------------NTDSLGEQIQRTFPEAKVVKT----LNTMNASLMVDPGRAAGGDH 181

Query: 308 DVTGVEIAG----ALKNVLAIA--AGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP 361
            V    ++G    A   V  +    G    ++LG+ + A            L   +G   
Sbjct: 182 SV---FVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWGALGTAN 238

Query: 362 ATI 364
              
Sbjct: 239 FNF 241

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404

 Score = 81.1 bits (199), Expect = 8e-17
 Identities = 49/362 (13%), Positives = 105/362 (29%), Gaps = 61/362 (16%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV- 187
           KV V GGG+    ++   A++    +V +L       +   +              +   
Sbjct: 4   KVCVCGGGNGAHTLSGLAASRDGV-EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62

Query: 188 --------IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL--SKGLE 237
                   + T D + A+ GAD  +  +P      + + ++ YV      + L    G E
Sbjct: 63  TEVKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFE 122

Query: 238 LNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLA 297
                   + I              + P      + +    + V      LA ++ +  A
Sbjct: 123 F-----QCRDILGDKAAAVSMMSFETLPWAC--RIKEFGRKVEVLGTKSVLAASLIKGTA 175

Query: 298 SKHLRISTSSDVTGVE--------IAGALKNVLAI--------AAGIVVG--------MN 333
                +ST   + G E            L    +           G   G          
Sbjct: 176 KTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMSYSFVHPAILFGRWGSWDGKPVPEAPLFY 235

Query: 334 LGNNSMAALVAQGCS-EIRWLATKMGAKPAT--ITGLSGTGDIMLTCF-VNLSRNRTVGV 389
            G +   A +   CS E + +A  + A      ++ +       L  +  ++  +  +  
Sbjct: 236 QGIDQATADMLTACSNECKDVANAIMAACPGNDLSDVKDIYQWYLEYYHEDIQDDHDLYH 295

Query: 390 RLGSGEKLDDILSSMNQVAEGVSTA------------GAVI--ALAQKYNVKMPVLTAVA 435
            + + +    ++  +  V  GV+              G ++   +A    V +P    + 
Sbjct: 296 AITTNKSYKGLVHPVKAVDGGVAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLI 355

Query: 436 RI 437
             
Sbjct: 356 MW 357

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 3e-11
 Identities = 52/351 (14%), Positives = 97/351 (27%), Gaps = 84/351 (23%)

Query: 12  FLNPIFTTSTTTNSSTSLHIQNFKLKLPHFPTKNPTLVFTLNSSSGSA------TTNNNN 65
               I +           HI    +      +    L +TL S                N
Sbjct: 41  MPKSILSKEEID------HI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 66  DNTIITPYPDDP-DPEPVSAVSSEIRTRDGRDRRKIVK--VAWEKLVRWSRTWRSKAKTD 122
              +++P   +   P  ++ +  E R R   D +   K  V+  +     R    +    
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---- 146

Query: 123 ILERTNKVVVLGGGSFG-TAMAAHVANKKSQL-----KVY------------MLMRDPAV 164
            L     V++ G    G T +A  V            K++            +L     +
Sbjct: 147 -LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 165 CQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADY--CL----------HAMPVQF 211
              I+    + R      +   + +       LL    Y  CL                 
Sbjct: 206 LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 212 SSSFL-----EGISDYVDPG----LPFISLSKGLEL-NTLRMMSQII---PQALRNPRQP 258
           S   L     + ++D++       +     S  L       ++ + +   PQ L  PR+ 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PRE- 321

Query: 259 FIALSGPSFALELMNKLPTAMVVASKDRKLA--NAVQQLLASKHLRISTSS 307
              L+     L        +++  S    LA  +  + +   K   I  SS
Sbjct: 322 --VLTTNPRRL--------SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 483

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 129 KVVVLGGGSFGTA----MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLP 184
           K+ ++G GS   A           + S+   ++ M D    +         +Y  E   P
Sbjct: 14  KISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNSP 73

Query: 185 ENVIATTDAKTALLGADYCLHAMPVQ 210
             ++ T+    A+ GAD+ ++     
Sbjct: 74  VKIVKTSSLDEAIDGADFIINTAYPY 99

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 44.4 bits (104), Expect = 5e-05
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 121 TDILERTNKVVVLGGGSFGTA------MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN 174
           +D +++  K+  +GGGS  T       +  +      +L +  +         I      
Sbjct: 1   SDAMDKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEK-LEIVGALAK 59

Query: 175 CRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV 209
            R   +  +P  +  T D + AL GAD+      V
Sbjct: 60  -RMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRV 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	100.0
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	100.0
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	100.0
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	100.0
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	100.0
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	100.0
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	100.0
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	100.0
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	100.0
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	100.0
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	100.0
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.97
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.97
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.96
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.96
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.96
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.95
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.95
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.95
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.95
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.94
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.94
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.94
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.94
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.94
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.94
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.94
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.94
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.93
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.93
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.93
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.93
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.93
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.92
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.92
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.92
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.92
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.91
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.91
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.9
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.9
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.9
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.9
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.89
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.89
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.89
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.88
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.88
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.87
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.87
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.87
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.87
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.87
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.85
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.82
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.81
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.8
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.77
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.75
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.74
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.74
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.74
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.72
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.7
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.7
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.69
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.65
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.64
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.63
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.63
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.62
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.6
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.59
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.58
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.57
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.56
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.53
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.53
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.5
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.23
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.48
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.43
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.39
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.38
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.37
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.3
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.29
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.23
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.1
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.09
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.09
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.07
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.07
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.06
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.05
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.05
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.05
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.02
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.01
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.01
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.99
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.99
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.97
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.97
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.95
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.95
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.94
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.93
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.92
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.91
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.91
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.9
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.9
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.89
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.88
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.88
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.88
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.87
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.85
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.84
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.82
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.8
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.8
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.8
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.77
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.76
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.74
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.74
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.73
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.73
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.73
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.73
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.71
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.71
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.66
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.65
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.6
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.58
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.58
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.55
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.55
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.54
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.54
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.53
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.52
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.51
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.47
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.46
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.44
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.43
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.43
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.43
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.42
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.41
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.41
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.4
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.4
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.39
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.38
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.37
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.37
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.35
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.33
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.33
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.3
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.29
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.29
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.29
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.28
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.28
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.28
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.26
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.26
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.25
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.25
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.25
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.24
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.23
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.23
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.21
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.21
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.19
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.19
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.18
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.17
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.15
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.15
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.14
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.13
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.13
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.13
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.12
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.12
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.12
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.12
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.12
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.11
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.11
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.11
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.1
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.1
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.08
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.08
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.07
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.06
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.05
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.04
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.03
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.0
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.0
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.99
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.98
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.96
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.96
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.95
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.93
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.92
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.9
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.89
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.88
4had_A	350	Probable oxidoreductase protein; structural genomi	97.88
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.88
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.87
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.87
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.86
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.85
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.83
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.82
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.79
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.78
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.77
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.76
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.76
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.74
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.72
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.71
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.71
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.68
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.68
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.67
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.65
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.64
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.64
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.63
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.63
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.62
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.6
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.59
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.59
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.58
4h3v_A	390	Oxidoreductase domain protein; structural genomics	97.55
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.54
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.53
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.53
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.53
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.53
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.52
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.52
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.49
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.48
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.48
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.48
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.47
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.46
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.42
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.42
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.42
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.42
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.42
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.42
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.41
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.41
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.4
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.38
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.36
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.35
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.35
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.32
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.32
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.32
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.32
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.31
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.28
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.27
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.25
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.24
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.21
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.2
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.18
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.18
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.17
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.16
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.16
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	97.1
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.1
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	97.1
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.08
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.07
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	97.03
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.01
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.01
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.01
3h2z_A	382	Mannitol-1-phosphate 5-dehydrogenase; PSI- protein	96.98
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.96
1lnq_A	336	MTHK channels, potassium channel related protein;	96.96
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.96
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	96.9
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.89
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.89
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.87
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.87
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.86
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.85
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.85
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.84
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.84
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.84
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	96.83
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.81
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.8
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.78
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.76
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.71
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.69
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.68
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.67
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.64
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	96.62
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.62
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.61
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.59
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.58
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.57
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.55
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.53
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.51
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.51
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.48
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.43
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.42
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.38
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.35
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.34
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.34
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.27
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.27
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.24
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.23
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.2
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.11
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.05
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.04
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.04
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.01
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.99
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	95.98
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.97
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.92
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	95.89
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.86
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.84
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.83
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.82
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.76
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.76
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	95.73
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.72
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.71
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.71
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.71
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.69
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	95.69
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.67
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.56
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.53
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	95.49
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.47
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	95.43
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.42
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.41
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.41
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.41
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.35
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.34
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.34
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.34
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.29
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.22
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.17
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.15
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	95.09
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.08
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.08
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	95.06
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.02
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.01
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	95.0
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.99
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.99
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.95
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.91
3dme_A	369	Conserved exported protein; structural genomics, P	94.88
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.84
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.83
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.83
2csu_A	457	457AA long hypothetical protein; structural genomi	94.82
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	94.81
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	94.76
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	94.69
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.68
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.68
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.66
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.66
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.66
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.66
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.61
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	94.6
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.55
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	94.53
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.53
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.52
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.48
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	94.48
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	94.47
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.47
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.45
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.45
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	94.42
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.41
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.38
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	94.37
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.37
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.36
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.35
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	94.3
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.29
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.28
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.27
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.26
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	94.25
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	94.24
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	94.22
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.18
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	94.17
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.16
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.14
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.14
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.13
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	94.12
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	94.12
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	94.12
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.07
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.07
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	94.07
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.04
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	94.04
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	94.04
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.03
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.02
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.02
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	93.98
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	93.96
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.93
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.92
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	93.88
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	93.84
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	93.83
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.83
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.82
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.81
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.81
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.79
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	93.79
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.75
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.75
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	93.73
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.71
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.69
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.69
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.68
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.67
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	93.66
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.66
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	93.65
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	93.65
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	93.62
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	93.62
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	93.59
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	93.59
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	93.57
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.55
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	93.54
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	93.52
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	93.51
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	93.51
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	93.51
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	93.48
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.48
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.47

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=100.00  E-value=5e-55  Score=444.45  Aligned_cols=325  Identities=34%  Similarity=0.555  Sum_probs=311.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|++++++.+++.+.+.+|+++..++.++.+++|++++++++|+||+|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G--~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVila  106 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKG--QKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIV  106 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTT--CCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEEC
Confidence            579999999999999999999999  999999999999999999998888999999999999999999889999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~  286 (458)
                      ||+++++++++++.++++++++||+++||+.+++ ..+++.+.+.++.  .+++++.||+++.+++.+.++.+++++.+.
T Consensus       107 Vp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~--~~~~vlsgP~~a~ev~~g~pt~~via~~~~  183 (356)
T 3k96_A          107 VPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQ--VPMAVISGPSLATEVAANLPTAVSLASNNS  183 (356)
T ss_dssp             CCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCS--CCEEEEESSCCHHHHHTTCCEEEEEEESCH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCC--CCEEEEECccHHHHHHcCCCeEEEEecCCH
Confidence            9999999999999999999999999999999988 8899999888874  357899999999999999999888999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~  366 (458)
                      +..++++++|+..+++++.++|+.+++|++++||++++++|+++++++++|...+++.++++|+.++++++|+++++|++
T Consensus       184 ~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~g  263 (356)
T 3k96_A          184 QFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTG  263 (356)
T ss_dssp             HHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred             HHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHH
Q 012720          367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK  446 (458)
Q Consensus       367 ~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~  446 (458)
                      ++|+||++.||++.++|||++|..+++|++++++++++++++||.++++.++++++++|+++|+++++|++++++.+|++
T Consensus       264 l~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~~~~~~~~  343 (356)
T 3k96_A          264 LAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILHEDLDPQQ  343 (356)
T ss_dssp             TTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCCHHH
T ss_pred             cchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCC
Q 012720          447 AVLELMSLPQ  456 (458)
Q Consensus       447 ~~~~l~~~~~  456 (458)
                      +++.||.+|.
T Consensus       344 ~~~~l~~r~~  353 (356)
T 3k96_A          344 AVQELLERSP  353 (356)
T ss_dssp             HHHHHHSCC-
T ss_pred             HHHHHHcCCC
Confidence            9999999985

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-51  Score=421.36  Aligned_cols=327  Identities=28%  Similarity=0.390  Sum_probs=293.8

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCC------CCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKS------QLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTD  192 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~------~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~~l~~~i~a~~~  192 (458)
                      .++..||+|||+|+||+++|..|+++|.      .++|++|.|+++     .++.+++.+.|.+|+|+..+|+++.+++|
T Consensus        31 ~~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~d  110 (391)
T 4fgw_A           31 AEKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPD  110 (391)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESC
T ss_pred             cCCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCC
Confidence            3345699999999999999999999871      125999999865     47789988999999999999999999999


Q ss_pred             HHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcch--hhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720          193 AKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t--~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e  270 (458)
                      ++++++++|+||++||++.++++++++.++++++.++|+++||++.++  ...+++++.+.++.   ++++++||+++.|
T Consensus       111 l~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~---~~~vLsGPs~A~E  187 (391)
T 4fgw_A          111 LIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGI---QCGALSGANIATE  187 (391)
T ss_dssp             HHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCC---EEEEEECSCCHHH
T ss_pred             HHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCc---cceeccCCchHHH
Confidence            999999999999999999999999999999999999999999998654  36789999988874   5789999999999


Q ss_pred             HhccCCeEEEEccCCHH---------HHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012720          271 LMNKLPTAMVVASKDRK---------LANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (458)
Q Consensus       271 i~~g~~t~v~i~g~d~e---------~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~a  341 (458)
                      ++.+.++.+++++.+.+         ..+.++.+|.+..|+++.++|+.|+|+++++||++|+++|+++++++|+|..++
T Consensus       188 Va~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAA  267 (391)
T 4fgw_A          188 VAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAA  267 (391)
T ss_dssp             HHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence            99999999888865432         357899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHc---CCCccccccccCCcchhhhhccCCCccchHHHHhh-CCCChHHHHhhc--cccchhhhHHH
Q 012720          342 LVAQGCSEIRWLATKM---GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSM--NQVAEGVSTAG  415 (458)
Q Consensus       342 l~~~~l~E~~~la~a~---Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~-~g~~~e~~~~~~--~~~~eg~kd~g  415 (458)
                      ++.++++|+.+|++++   |.++.+|.+++|+||+++||++  +|||++|..++ +|++.+++.+++  ++++||.+.++
T Consensus       268 LitrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta~  345 (391)
T 4fgw_A          268 IQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG--GRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCK  345 (391)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHS--SHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecC--CccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHHH
Confidence            9999999999999998   5556667788999999999998  99999999998 499998888876  78999999999


Q ss_pred             HHHHHHHHcCC--CCcHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 012720          416 AVIALAQKYNV--KMPVLTAVARIIDNELTPKKAVLELMSLP  455 (458)
Q Consensus       416 ~v~~lA~~~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~  455 (458)
                      .++++++++|+  ++|+++++|++++++.+++++.+.|+.++
T Consensus       346 ~v~~l~~~~~v~~emPI~~~vy~IL~~~~~~~~~~~~l~~~~  387 (391)
T 4fgw_A          346 EVHEWLETCGSVEDFPLFEAVYQIVYNNYPMKNLPDMIEELD  387 (391)
T ss_dssp             HHHHHHHHHTCSTTCHHHHHHHHHHHSCCCSTTHHHHHCC--
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence            99999999999  89999999999999999998888877654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=100.00  E-value=1.4e-44  Score=368.34  Aligned_cols=339  Identities=35%  Similarity=0.550  Sum_probs=293.2

Q ss_pred             chhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC
Q 012720          113 RTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD  192 (458)
Q Consensus       113 ~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~  192 (458)
                      ++|+...+.+.| .||||+|||+|+||++||..|+++|  ++|++|+|++++++.+++.+.+..++++..++.++.++++
T Consensus         2 ~~~~~~~~~~~m-~M~kI~iIG~G~mG~~la~~L~~~G--~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   78 (366)
T 1evy_A            2 STKQHSAKDELL-YLNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSD   78 (366)
T ss_dssp             -------CCCCC-CEEEEEEECCSHHHHHHHHHHTTTE--EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESC
T ss_pred             ccchhhhhhHhh-ccCeEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCC
Confidence            356554334444 3449999999999999999999999  9999999999999999988777677777667777888889


Q ss_pred             HHhhcCCCCEEEEcCccccHHHHHHh----hhhcCCC-CCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECccc
Q 012720          193 AKTALLGADYCLHAMPVQFSSSFLEG----ISDYVDP-GLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF  267 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp~~~v~~vl~~----i~~~l~~-~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~  267 (458)
                      ++++++++|+||+|||++++.+++.+    +.+.+++ +++||+++||+.+++.+.+.+.+.+.++.  ..+.++.||++
T Consensus        79 ~~~~~~~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~--~~~~v~~gp~~  156 (366)
T 1evy_A           79 VEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS--PLLSVLAGPSF  156 (366)
T ss_dssp             HHHHHTTCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG--GGEEEEESSCC
T ss_pred             HHHHHcCCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCC--CcEEEEeCCCh
Confidence            98888999999999999999999998    9888888 99999999999987666777777665553  24678999999


Q ss_pred             HHHHhccCCeEEEEccCCHHHHHHHHHHHhcC--CCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Q 012720          268 ALELMNKLPTAMVVASKDRKLANAVQQLLASK--HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQ  345 (458)
Q Consensus       268 a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~--g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~  345 (458)
                      +.++..+.++.+.+++.+.+.+++++++|+..  +++++.++|+.+.+|+|+++|+++++.|+..++++++|...+++..
T Consensus       157 ~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~  236 (366)
T 1evy_A          157 AIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMR  236 (366)
T ss_dssp             HHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHhCCceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHH
Confidence            99888887777777888889999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcC
Q 012720          346 GCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYN  425 (458)
Q Consensus       346 ~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~g  425 (458)
                      ++.|+.++++++|++++++.++.+.++.+.++.+..++|++++.++.+|++++++.+.++...|+.+|+++++++|+++|
T Consensus       237 ~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~g  316 (366)
T 1evy_A          237 GLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLK  316 (366)
T ss_dssp             HHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHHHHHHhC
Confidence            99999999999999998888877778888788887788888899999999988887777788899999999999999999


Q ss_pred             CCCcHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012720          426 VKMPVLTAVARIIDNELTPKKAVLELMSLPQ  456 (458)
Q Consensus       426 v~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~  456 (458)
                      +++|+++.+|++++.+.+|+++++.|+++|.
T Consensus       317 v~~P~~~~v~~~~~~~~~~~~~~~~l~~~~~  347 (366)
T 1evy_A          317 VKMPLCHQIYEIVYKKKNPRDALADLLSCGL  347 (366)
T ss_dssp             CCCHHHHHHHHHHHSCCCHHHHHHHHGGGCS
T ss_pred             CCCcHHHHHHHHHHCCCCHHHHHHHHHcCCc
Confidence            9999999999999999999999999999874

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=100.00  E-value=6.5e-44  Score=365.04  Aligned_cols=325  Identities=24%  Similarity=0.392  Sum_probs=293.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcC-----CCCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKK-----SQLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG-----~~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      ||||+|||+|+||++||..|+++|     ++++|++|+|+++     +++.+++.+.+..|+++..++.++.++++++++
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            468999999999999999999886     1278999999988     899998888777788887777888998899888


Q ss_pred             cCCCCEEEEcCccccHHHHHHhhhh----cCCCCCeEEEeccCCCc--chhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720          197 LLGADYCLHAMPVQFSSSFLEGISD----YVDPGLPFISLSKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (458)
Q Consensus       197 ~~~aDiVilaVp~~~v~~vl~~i~~----~l~~~~ivV~~snGi~~--~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e  270 (458)
                      ++++|+||+|||++++++++.++.+    .++++++||+++||+.+  ++.+.+++.+.+.++   .++.++.||+++.+
T Consensus       101 ~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~  177 (375)
T 1yj8_A          101 INDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN---IPCSALSGANIAMD  177 (375)
T ss_dssp             HTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS---SCEEEEECSCCHHH
T ss_pred             HcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC---CCEEEEeCCchHHH
Confidence            8999999999999999999999998    89999999999999987  345677788877665   35788999999998


Q ss_pred             HhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720          271 LMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI  350 (458)
Q Consensus       271 i~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~  350 (458)
                      +..+.++.+.+++.+.+..++++++|+..+++++.++|+.+++|+|++||++++++|+..++++++|...+++..+++|+
T Consensus       178 v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~  257 (375)
T 1yj8_A          178 VAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEM  257 (375)
T ss_dssp             HHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Confidence            88888877778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc--CCCccccccccCCcchhhhhccCCCccchHHHHhhC-C--CChHHHHhhc--cccchhhhHHHHHHHHHHH
Q 012720          351 RWLATKM--GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-G--EKLDDILSSM--NQVAEGVSTAGAVIALAQK  423 (458)
Q Consensus       351 ~~la~a~--Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~-g--~~~e~~~~~~--~~~~eg~kd~g~v~~lA~~  423 (458)
                      .++++++  |++++++.++++++|++.+|++  ++++.++..+.+ |  ++++|+.+++  ++..|+.+++++++++|++
T Consensus       258 ~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~--~~~~~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~~  335 (375)
T 1yj8_A          258 ILFGKVFFQKFNENILLESCGFADIITSFLA--GRNAKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKE  335 (375)
T ss_dssp             HHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS--SSHHHHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCcchhhccccccceeEeeeC--CccHHHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHHH
Confidence            9999999  6999999998899999999887  588888888877 7  6788887755  7899999999999999999


Q ss_pred             cCC--CCcHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012720          424 YNV--KMPVLTAVARIIDNELTPKKAVLELMSLPQ  456 (458)
Q Consensus       424 ~gv--~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~  456 (458)
                      +|+  ++|+++++|++++.+.+|+++++.||++|.
T Consensus       336 ~gv~~~~P~~~~v~~~~~~~~~~~~~~~~l~~~~~  370 (375)
T 1yj8_A          336 KNMTNEFPLFTVLHKISFENEDPSSLLKTFMNNKI  370 (375)
T ss_dssp             TTCGGGCHHHHHHHHHHHSCCCTTHHHHHHSSCCC
T ss_pred             hCCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCcH
Confidence            999  999999999999999999999999999985

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=100.00  E-value=1.9e-43  Score=356.15  Aligned_cols=315  Identities=36%  Similarity=0.524  Sum_probs=280.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .|||+|||+|+||++||.+|+++|  ++|++|+|++++++.+++.|.+. ++++..+  ++.+++++++ ++++|+||+|
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G--~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~--~~~~~~~~~~-~~~aDvVil~   87 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENG--EEVILWARRKEIVDLINVSHTSP-YVEESKI--TVRATNDLEE-IKKEDILVIA   87 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHSCBT-TBTTCCC--CSEEESCGGG-CCTTEEEEEC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhCCcc-cCCCCee--eEEEeCCHHH-hcCCCEEEEE
Confidence            589999999999999999999999  99999999999999999888665 6666554  5678888888 8999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~  286 (458)
                      ||++++++++.++.+   ++++||+++||+++++.+.+++.+.+.++   ....++.||+++.++..|.++.+.+++.+ 
T Consensus        88 vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~g~~~-  160 (335)
T 1z82_A           88 IPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG---CPYAVLSGPSHAEEVAKKLPTAVTLAGEN-  160 (335)
T ss_dssp             SCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC---CCEEEEESSCCHHHHHTTCCEEEEEEETT-
T ss_pred             CCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC---CceEEEECCccHHHHhCCCceEEEEEehh-
Confidence            999999999988776   78999999999998776778888877655   35788999999998888877666666654 


Q ss_pred             HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccc
Q 012720          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~  366 (458)
                        +++++++|+..+++++.++|+.+.+|+|++||++++++|+..++++++|...+++..++.|+.++++++|++++++.+
T Consensus       161 --~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~  238 (335)
T 1z82_A          161 --SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMG  238 (335)
T ss_dssp             --HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred             --HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence              789999999999999999999999999999999999999999999999998999999999999999999999998888


Q ss_pred             ccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHH
Q 012720          367 LSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKK  446 (458)
Q Consensus       367 ~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~  446 (458)
                      +.+++|.+.++.+..++|++++.++.+|++++++.+..+++.|+.+++++++++|+++|+++|++++++++++.+.++++
T Consensus       239 l~~~~~~~~t~~s~~~~n~~~~~~~~~g~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~~~~~~~  318 (335)
T 1z82_A          239 LAGIGDLMVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVYEGKPPLQ  318 (335)
T ss_dssp             TTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCCHHH
T ss_pred             cccccceeeeccCccCcHHHHHHHHhCCCCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCCHHH
Confidence            77778888888888888888888888898888887777889999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCC
Q 012720          447 AVLELMSLPQ  456 (458)
Q Consensus       447 ~~~~l~~~~~  456 (458)
                      +++.||++|.
T Consensus       319 ~~~~l~~~~~  328 (335)
T 1z82_A          319 SMRDLMRRSL  328 (335)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHcCCc
Confidence            9999999874

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=100.00  E-value=6.2e-43  Score=354.20  Aligned_cols=325  Identities=28%  Similarity=0.464  Sum_probs=289.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-----CCeEEEEeCCHH-----HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-----QLKVYMLMRDPA-----VCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-----~~~V~v~~r~~~-----~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      +|||+|||+|+||++||..|+++|.     +++|++|+|+++     +.+.+++.+.+..++++..++.++.++++++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            4799999999999999999998861     168999999988     888898877766677666667778888899888


Q ss_pred             cCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc--chhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhcc
Q 012720          197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNK  274 (458)
Q Consensus       197 ~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~--~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g  274 (458)
                      ++++|+||+|||+++++++++++.+.++++++||+++||+..  ++.+.+++.+.+.++   .++.++.||+++.++..+
T Consensus        88 ~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g  164 (354)
T 1x0v_A           88 AEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG---IPMSVLMGANIASEVADE  164 (354)
T ss_dssp             HTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT---CCEEEEECSCCHHHHHTT
T ss_pred             HcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC---CCEEEEECCCcHHHHHhc
Confidence            899999999999999999999999999999999999999984  444567777777665   347789999999988888


Q ss_pred             CCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Q 012720          275 LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLA  354 (458)
Q Consensus       275 ~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la  354 (458)
                      .++.+.+++.+.+..++++++|+..+++++.++|+.+.+|+|++||++++++|+..++++++|...+++..+++|+.++|
T Consensus       165 ~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~la  244 (354)
T 1x0v_A          165 KFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFA  244 (354)
T ss_dssp             CCEEEEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH
Confidence            77777778888899999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             HHcCC---CccccccccCCcchhhhhccCCCccchHHHHhhC-CCChHHHHhhc--cccchhhhHHHHHHHHHHHcCC--
Q 012720          355 TKMGA---KPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGS-GEKLDDILSSM--NQVAEGVSTAGAVIALAQKYNV--  426 (458)
Q Consensus       355 ~a~Gi---~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~-g~~~e~~~~~~--~~~~eg~kd~g~v~~lA~~~gv--  426 (458)
                      +++|+   +++++.++++++|++.+|.+  +++++++.++.+ |++.+++.+++  ++..|+.+++++++++|+++|+  
T Consensus       245 ~a~G~~~~~~~~~~~~~g~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~gv~~  322 (354)
T 1x0v_A          245 KLFCSGPVSSATFLESCGVADLITTCYG--GRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVD  322 (354)
T ss_dssp             HHHSSSCCCGGGGGSTTTHHHHHHHHHH--CHHHHHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHTCGG
T ss_pred             HHhcCCCCCcccccccchHHHHHHhhcc--cccHHHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHhCCCC
Confidence            99999   99999888888999888876  678888888876 88888877654  7899999999999999999999  


Q ss_pred             CCcHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012720          427 KMPVLTAVARIIDNELTPKKAVLELMSLPQ  456 (458)
Q Consensus       427 ~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~  456 (458)
                      ++|+++++|++++.+.+|+++++.||++|.
T Consensus       323 ~~P~~~~v~~~~~~~~~~~~~~~~l~~~~~  352 (354)
T 1x0v_A          323 KFPLFMAVYKVCYEGQPVGEFIHCLQNHPE  352 (354)
T ss_dssp             GSHHHHHHHHHHHSCCCGGGTHHHHHTCCS
T ss_pred             CCCHHHHHHHHHhCCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999975

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=100.00  E-value=1.2e-38  Score=319.70  Aligned_cols=318  Identities=25%  Similarity=0.362  Sum_probs=268.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCCEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r--~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiV  203 (458)
                      |||+|||+|+||+++|..|+++|  ++|++|+|  ++++++.+++.+.+..+  +..+ .++.+++  +++++++++|+|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~~~~~~~~D~v   75 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGTEFDTEILKSISAGREHPRL--GVKL-NGVEIFWPEQLEKCLENAEVV   75 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC--CEEEEECCGGGHHHHHHHHTTCCBTTT--TBCC-CSEEEECGGGHHHHHTTCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHhCcCccc--Cccc-cceEEecHHhHHHHHhcCCEE
Confidence            68999999999999999999999  99999999  99999999887654332  2222 3456676  777778999999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCC---CcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL---ELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi---~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~  280 (458)
                      |+|||++++.+++.++.+ ++++++||+++||+   .+++.+.+.+.+.+.+|.. ...+++.||+++.+...+.++.++
T Consensus        76 i~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~-~~~~~~~~p~~~~~~~~g~~~~~~  153 (335)
T 1txg_A           76 LLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLR-ERTVAITGPAIAREVAKRMPTTVV  153 (335)
T ss_dssp             EECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCG-GGEEEEESSCCHHHHHTTCCEEEE
T ss_pred             EEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCC-CcEEEEECCCcHHHHHccCCcEEE
Confidence            999999999999999999 99999999999999   6555556666665533421 246788999999887777766677


Q ss_pred             EccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHHHHHHHHH
Q 012720          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLAT  355 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~-----~n~~~al~~~~l~E~~~la~  355 (458)
                      +++.+++..+.++++|+..|++++..+|+.+.+|.|+++|++.+++|+..+++++     +|....++..+++|+.++++
T Consensus       154 ~~~~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~  233 (335)
T 1txg_A          154 FSSPSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIE  233 (335)
T ss_dssp             EECSCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            7887888999999999999999999999999999999999999999988888887     88888999999999999999


Q ss_pred             HcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhcc----ccchhhhHHHHHHHHHHHcCCCCcHH
Q 012720          356 KMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMN----QVAEGVSTAGAVIALAQKYNVKMPVL  431 (458)
Q Consensus       356 a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~----~~~eg~kd~g~v~~lA~~~gv~~P~~  431 (458)
                      ++|++++++.++.+++|.+.++.+  ++++.++.++..|+++++....++    ...|+.+++++++++|+++|+++|++
T Consensus       234 ~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~~  311 (335)
T 1txg_A          234 ILGGDRETAFGLSGFGDLIATFRG--GRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLL  311 (335)
T ss_dssp             HHTSCGGGGGSTTTHHHHHHTTTC--HHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             HHCCCcchhhcccchhheeecccc--CccHHHHHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcHH
Confidence            999999988877677777766655  566667777877877653333324    67899999999999999999999999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHhcC
Q 012720          432 TAVARIIDNELTPKKAVLELMSL  454 (458)
Q Consensus       432 ~~v~~ll~~~~~~~~~~~~l~~~  454 (458)
                      +.+|++++.+.+|.++++.|++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~l~~~  334 (335)
T 1txg_A          312 DSIYRVLYEGLKVEEVLFELATF  334 (335)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHcC
Confidence            99999999999999999999874

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=100.00  E-value=4.6e-34  Score=285.95  Aligned_cols=291  Identities=15%  Similarity=0.192  Sum_probs=221.2

Q ss_pred             hhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       122 ~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +....+|||+|||+|+||+++|..|+++|  ++|++| +++++++.+++.|.+.. .++..++..+.+++++++ ++++|
T Consensus        14 ~~~~~~~kI~IiGaGa~G~~~a~~L~~~G--~~V~l~-~~~~~~~~i~~~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~D   88 (318)
T 3hwr_A           14 NLYFQGMKVAIMGAGAVGCYYGGMLARAG--HEVILI-ARPQHVQAIEATGLRLE-TQSFDEQVKVSASSDPSA-VQGAD   88 (318)
T ss_dssp             ------CEEEEESCSHHHHHHHHHHHHTT--CEEEEE-CCHHHHHHHHHHCEEEE-CSSCEEEECCEEESCGGG-GTTCS
T ss_pred             hhhccCCcEEEECcCHHHHHHHHHHHHCC--CeEEEE-EcHhHHHHHHhCCeEEE-cCCCcEEEeeeeeCCHHH-cCCCC
Confidence            34555789999999999999999999999  999999 89999999998886544 244445556777788765 58999


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHH-HHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII-PQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l-~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~  280 (458)
                      +||+|||+++++++++++.++++++++||+++||++.+  +.+.+.+ .+.++......+++.||+++.+.+.|.   +.
T Consensus        89 ~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~--~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~---~~  163 (318)
T 3hwr_A           89 LVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENA--DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGE---LV  163 (318)
T ss_dssp             EEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHH--HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEE---EE
T ss_pred             EEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcH--HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCce---EE
Confidence            99999999999999999999999999999999999875  2333443 122211111235678999988766553   23


Q ss_pred             EccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC----cHHHHHHHHHHHHHHHHHHH
Q 012720          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN----NSMAALVAQGCSEIRWLATK  356 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~----n~~~al~~~~l~E~~~la~a  356 (458)
                      ++.  .+..+.++++|+..+++++.++|+.+.+|.|+++|+..++.++..+++++.    .....++..++.|+.+++++
T Consensus       164 ig~--~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a  241 (318)
T 3hwr_A          164 IEP--TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARA  241 (318)
T ss_dssp             ECC--CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             EcC--CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHH
Confidence            555  345688999999999999999999999999999999888888887776553    34678999999999999999


Q ss_pred             cCCCccccccccCCcchhh-hhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHH
Q 012720          357 MGAKPATITGLSGTGDIML-TCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV  434 (458)
Q Consensus       357 ~Gi~~~~~~~~~g~gd~~~-t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v  434 (458)
                      +|++.+.-.     .+.+. .+... ..++ +|.+|+.+|+++| +          ...+|+++++|+++|+++|+++++
T Consensus       242 ~G~~l~~~~-----~~~~~~~~~~~-~~~~sSM~qD~~~gr~tE-i----------d~i~G~vv~~a~~~gv~tP~~~~l  304 (318)
T 3hwr_A          242 EGVKLPDDV-----ALAIRRIAETM-PRQSSSTAQDLARGKRSE-I----------DHLNGLIVRRGDALGIPVPANRVL  304 (318)
T ss_dssp             TTCCCCTTH-----HHHHHHHHHHS-TTCCCHHHHHHHTTCCCS-G----------GGTHHHHHHHHHHTTCCCHHHHHH
T ss_pred             cCCCCChHH-----HHHHHHHHHhc-CCCCcHHHHHHHcCChhH-H----------HHHHHHHHHHHHHhCCCCcHHHHH
Confidence            999854211     01111 11111 1233 4678888887765 2          366799999999999999999999


Q ss_pred             HHHHhcC
Q 012720          435 ARIIDNE  441 (458)
Q Consensus       435 ~~ll~~~  441 (458)
                      |++++..
T Consensus       305 ~~ll~~~  311 (318)
T 3hwr_A          305 HALVRLI  311 (318)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=100.00  E-value=1.1e-33  Score=282.23  Aligned_cols=285  Identities=15%  Similarity=0.185  Sum_probs=216.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccC-CCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYF-PEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~-~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|++  .+.+++.|++..+. ++..++ .+.+++++++ +..+|+||+
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~-~~~~~~~~~~-~~~~D~vil   75 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSG--EDVHFLLRRD--YEAIAGNGLKVFSINGDFTLP-HVKGYRAPEE-IGPMDLVLV   75 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTS--CCEEEECSTT--HHHHHHTCEEEEETTCCEEES-CCCEESCHHH-HCCCSEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--CeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEe-eceeecCHHH-cCCCCEEEE
Confidence            479999999999999999999999  9999999986  47888877654432 222222 3456677766 589999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC-CC-----EEEEECcccHHHHhccCCeEE
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR-QP-----FIALSGPSFALELMNKLPTAM  279 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~-~~-----~~vl~gP~~a~ei~~g~~t~v  279 (458)
                      |||+++++++++.+.+++.++++||+++||+++.      +.+.+.++... ..     .+.+.||+++.+.+.+   .+
T Consensus        76 avk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~------~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g---~~  146 (312)
T 3hn2_A           76 GLKTFANSRYEELIRPLVEEGTQILTLQNGLGNE------EALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAG---RI  146 (312)
T ss_dssp             CCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH------HHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEE---EE
T ss_pred             ecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH------HHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCC---eE
Confidence            9999999999999999999999999999999864      23444444210 11     1234568777654333   34


Q ss_pred             EEcc---CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHH
Q 012720          280 VVAS---KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRW  352 (458)
Q Consensus       280 ~i~g---~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~~~  352 (458)
                      .++.   .+.+..+.++++|+..+++++.++|+.+.+|.|+++|+..++.+...++.++    ++....++.+++.|+.+
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~  226 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIA  226 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHH
Confidence            4553   3467889999999999999999999999999999999988877777776654    45678999999999999


Q ss_pred             HHHHcC--CCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCc
Q 012720          353 LATKMG--AKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMP  429 (458)
Q Consensus       353 la~a~G--i~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P  429 (458)
                      +++++|  ++.+.     ...+.+.++....++++ +|.+|+.+|+++|           ....+|+++++|+++|+++|
T Consensus       227 va~a~G~~~~~~~-----~~~~~~~~~~~~~~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~gv~~P  290 (312)
T 3hn2_A          227 GANAQGLATFIAD-----GYVDDMLEFTDAMGEYKPSMEIDREEGRPLE-----------IAAIFRTPLAYGAREGIAMP  290 (312)
T ss_dssp             HHHTSCCSSCCCT-----THHHHHHHHHTTSCSCCCHHHHHHHTTCCCC-----------HHHHTHHHHHHHHHTTCCCH
T ss_pred             HHHHcCCccCCCH-----HHHHHHHHHHhcCCCCCchHHHHHHhCCCcc-----------HHHHhhHHHHHHHHhCCCCC
Confidence            999999  77431     11233333333334454 4668888887764           23677999999999999999


Q ss_pred             HHHHHHHHHhcCC
Q 012720          430 VLTAVARIIDNEL  442 (458)
Q Consensus       430 ~~~~v~~ll~~~~  442 (458)
                      +++++|++++..+
T Consensus       291 ~~~~l~~ll~~~~  303 (312)
T 3hn2_A          291 RVEMLATLLEQAT  303 (312)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999997644

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=100.00  E-value=3.7e-33  Score=279.45  Aligned_cols=282  Identities=14%  Similarity=0.183  Sum_probs=209.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCc--cCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR--YFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~--~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|++  .+.+++.|+...  +.++..++ .+.++++++++.+++|+||
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~-~~~~~~~~~~~~~~~DlVi   76 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTG--HCVSVVSRSD--YETVKAKGIRIRSATLGDYTFR-PAAVVRSAAELETKPDCTL   76 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTT--CEEEEECSTT--HHHHHHHCEEEEETTTCCEEEC-CSCEESCGGGCSSCCSEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEe-eeeeECCHHHcCCCCCEEE
Confidence            489999999999999999999999  9999999987  378888775322  33444433 3556778887666999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccH-------HHHhccCCe
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA-------LELMNKLPT  277 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a-------~ei~~g~~t  277 (458)
                      +|||+++++++++.+.++++++++||+++||+++.      +.+.+.++..    .++.|+++.       .++..+.+.
T Consensus        77 lavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~------~~l~~~~~~~----~vl~g~~~~~a~~~~pg~v~~~~~~  146 (320)
T 3i83_A           77 LCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE------PEVAAAFPDN----EVISGLAFIGVTRTAPGEIWHQAYG  146 (320)
T ss_dssp             ECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS------HHHHHHSTTS----CEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH------HHHHHHCCCC----cEEEEEEEeceEEcCCCEEEECCCC
Confidence            99999999999999999999999999999999875      3455555532    133444332       122222233


Q ss_pred             EEEEc---cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHH
Q 012720          278 AMVVA---SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEI  350 (458)
Q Consensus       278 ~v~i~---g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~  350 (458)
                      .+.++   +.+.+..+.++++|+..+++++.++|+.+.+|.|+++|+..++.++..++..+    ++. ..++.+++.|+
T Consensus       147 ~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~-~~l~~~~~~E~  225 (320)
T 3i83_A          147 RLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQ-EGFVRAIMQEI  225 (320)
T ss_dssp             EEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHC-HHHHHHHHHHH
T ss_pred             EEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcH-HHHHHHHHHHH
Confidence            44555   34567889999999999999999999999999999999865555555554433    333 88999999999


Q ss_pred             HHHHHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCc
Q 012720          351 RWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMP  429 (458)
Q Consensus       351 ~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P  429 (458)
                      .++++++|++.+.-     ..+.+..+....++++ +|.+|+.+|+++|           ....+|+++++|+++|+++|
T Consensus       226 ~~va~a~G~~l~~~-----~~~~~~~~~~~~~~~~sSM~qD~~~gr~tE-----------id~i~G~vv~~a~~~gv~~P  289 (320)
T 3i83_A          226 RAVAAANGHPLPED-----IVEKNVASTYKMPPYKTSMLVDFEAGQPME-----------TEVILGNAVRAGRRTRVAIP  289 (320)
T ss_dssp             HHHHHHTTCCCCTT-----HHHHHHHHHHHSCCCCCHHHHHHHHTCCCC-----------HHHHTHHHHHHHHHTTCCCH
T ss_pred             HHHHHHcCCCCChH-----HHHHHHHHHhcCCCCCCcHHHHHHhCCCch-----------HHHHccHHHHHHHHhCCCCC
Confidence            99999999985421     1122222222223343 4667777777664           33677999999999999999


Q ss_pred             HHHHHHHHHhc
Q 012720          430 VLTAVARIIDN  440 (458)
Q Consensus       430 ~~~~v~~ll~~  440 (458)
                      +++++|++++.
T Consensus       290 ~~~~l~~~l~~  300 (320)
T 3i83_A          290 HLESVYALMKL  300 (320)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999975

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=100.00  E-value=1.6e-32  Score=276.58  Aligned_cols=291  Identities=15%  Similarity=0.145  Sum_probs=212.1

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+|||+|||+|+||+++|..|+++|  ++|++|+|+ +..+.+++.|.+... ++..++..+.+++++++ +.++|+||+
T Consensus         2 ~~mkI~IiGaG~~G~~~a~~L~~~g--~~V~~~~r~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~-~~~~D~Vil   76 (335)
T 3ghy_A            2 SLTRICIVGAGAVGGYLGARLALAG--EAINVLARG-ATLQALQTAGLRLTE-DGATHTLPVRATHDAAA-LGEQDVVIV   76 (335)
T ss_dssp             CCCCEEEESCCHHHHHHHHHHHHTT--CCEEEECCH-HHHHHHHHTCEEEEE-TTEEEEECCEEESCHHH-HCCCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEECh-HHHHHHHHCCCEEec-CCCeEEEeeeEECCHHH-cCCCCEEEE
Confidence            3589999999999999999999999  999999996 678888887765432 33333444667788877 589999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCC--------cchhhh-----HHHHHHHHhCCCC------CCEEEEECcc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE--------LNTLRM-----MSQIIPQALRNPR------QPFIALSGPS  266 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~--------~~t~~~-----l~e~l~~~lg~~~------~~~~vl~gP~  266 (458)
                      |||+++++++++++.+.++++++||+++||+.        +.+...     ..+.+.+.++...      ...+.+.+|+
T Consensus        77 avk~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg  156 (335)
T 3ghy_A           77 AVKAPALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPG  156 (335)
T ss_dssp             CCCHHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTT
T ss_pred             eCCchhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCc
Confidence            99999999999999999999999999999974        111111     1124445444311      1124567888


Q ss_pred             cHHHHhccCCeEEEEc---cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHH----HHHHHHHHHHhcccCCCcHH
Q 012720          267 FALELMNKLPTAMVVA---SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALK----NVLAIAAGIVVGMNLGNNSM  339 (458)
Q Consensus       267 ~a~ei~~g~~t~v~i~---g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalk----Ni~ai~~G~~~~~kl~~n~~  339 (458)
                      ++.+...+   .+.++   +.+.+..+.++++|+..+++++.++|+.+..|.|++.    |++++.+|+..+..+.++..
T Consensus       157 ~v~~~~~g---~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~  233 (335)
T 3ghy_A          157 HIRHGNGR---RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLV  233 (335)
T ss_dssp             EEEECSCC---EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHH
T ss_pred             EEEECCCC---eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHH
Confidence            77654333   34454   3345788999999999999999999999999999875    55566666655555667888


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCC-ChHHHHhhccccchhhhHHHHH
Q 012720          340 AALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGE-KLDDILSSMNQVAEGVSTAGAV  417 (458)
Q Consensus       340 ~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~-~~e~~~~~~~~~~eg~kd~g~v  417 (458)
                      ..++.+++.|+.++++++|+++....+     ..+ .+....+.++ +|.+|+.+|+ ++|           ....+|++
T Consensus       234 ~~l~~~~~~E~~~va~a~G~~~~~~~~-----~~~-~~~~~~~~~~sSM~qD~~~gr~~tE-----------id~i~G~v  296 (335)
T 3ghy_A          234 SAFCLAVMAEAKAIGARIGCPIEQSGE-----ARS-AVTRQLGAFKTSMLQDAEAGRGPLE-----------IDALVASV  296 (335)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCCSCHH-----HHH-HHHHTTCSCCCTTTC-----CCCCC-----------HHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCccHH-----HHH-HHHhccCCCCcHHHHHHHcCCCCch-----------HHHHhhHH
Confidence            899999999999999999998653321     111 1111112333 4567777777 664           33677999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHhcC
Q 012720          418 IALAQKYNVKMPVLTAVARIIDNE  441 (458)
Q Consensus       418 ~~lA~~~gv~~P~~~~v~~ll~~~  441 (458)
                      +++|+++|+++|+++++|++++..
T Consensus       297 v~~a~~~gv~~P~~~~l~~li~~~  320 (335)
T 3ghy_A          297 REIGLHVGVPTPQIDTLLGLVRLH  320 (335)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.97  E-value=1.1e-30  Score=258.68  Aligned_cols=290  Identities=17%  Similarity=0.131  Sum_probs=210.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDiV  203 (458)
                      ||||+|||+|+||+++|..|+++|  ++|++|+|++++++.+++.|....+.++ .++.++.+++ .+++.   +++|+|
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~d~v   78 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGG--NDVTLIDQWPAHIEAIRKNGLIADFNGE-EVVANLPIFS-PEEIDHQNEQVDLI   78 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHCEEEEETTE-EEEECCCEEC-GGGCCTTSCCCSEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHhCCEEEEeCCC-eeEecceeec-chhhcccCCCCCEE
Confidence            689999999999999999999999  9999999999999999887654332211 1111233333 23333   389999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-C-----CCEEEEECcccHHHHhccCCe
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-R-----QPFIALSGPSFALELMNKLPT  277 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~-~-----~~~~vl~gP~~a~ei~~g~~t  277 (458)
                      |+|||+.++.++++++.+.++++++||+++||+...      +.+.+.++.. .     ...+.+.||+++.+...|...
T Consensus        79 i~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~------~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~  152 (316)
T 2ew2_A           79 IALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHE------DVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIE  152 (316)
T ss_dssp             EECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTH------HHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEE
T ss_pred             EEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcH------HHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEE
Confidence            999999999999999999999999999999998742      2233333221 0     011235678766554445443


Q ss_pred             EEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhccc---CCCcH-HHHHHHHHHHHHHHH
Q 012720          278 AMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN---LGNNS-MAALVAQGCSEIRWL  353 (458)
Q Consensus       278 ~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~k---l~~n~-~~al~~~~l~E~~~l  353 (458)
                      .....+.+++..+.++++|+..|+++...+|+...+|.|+++|++..+.+...+..   +..|. ...++..++.|+..+
T Consensus       153 i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~l  232 (316)
T 2ew2_A          153 LENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAV  232 (316)
T ss_dssp             EEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred             EeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            32234567888999999999999999999999999999999998766655554442   22233 448899999999999


Q ss_pred             HHHcCCCccccccccCCcchhhhhccCC--Cccch-HHHHh-hCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCc
Q 012720          354 ATKMGAKPATITGLSGTGDIMLTCFVNL--SRNRT-VGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMP  429 (458)
Q Consensus       354 a~a~Gi~~~~~~~~~g~gd~~~t~~~~~--srn~~-~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P  429 (458)
                      ++++|++++.    ..+.+.+.++.+..  .++++ +..++ ..|+++|           ..+++++++++|+++|+++|
T Consensus       233 a~~~G~~~~~----~~~~~~~~~~~~~~~~~~~~~sm~~d~~~~g~~~E-----------~~~~~~~~~~~a~~~gv~~P  297 (316)
T 2ew2_A          233 AEKEAIYLDQ----AEVYTHIVQTYDPNGIGLHYPSMYQDLIKNHRLTE-----------IDYINGAVWRKGQKYNVATP  297 (316)
T ss_dssp             HHHTTCCCCH----HHHHHHHHHTTCTTTTTTSCCHHHHHHTTTCCCCS-----------GGGTHHHHHHHHHHHTCCCH
T ss_pred             HHHcCCCCCh----HHHHHHHHHHhccccCCCCCcHHHHHHHHcCCcch-----------HHHHhhHHHHHHHHhCCCCC
Confidence            9999998731    01223444444333  45554 66777 7777654           35899999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 012720          430 VLTAVARIIDNE  441 (458)
Q Consensus       430 ~~~~v~~ll~~~  441 (458)
                      +++.+|++++..
T Consensus       298 ~~~~~~~~~~~~  309 (316)
T 2ew2_A          298 FCAMLTQLVHGK  309 (316)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.97  E-value=5.6e-30  Score=253.38  Aligned_cols=274  Identities=13%  Similarity=0.115  Sum_probs=195.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil  205 (458)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|+++.++....        .+ ..+..+.  .+..+.+ +++|+||+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~--------~g-~~~~~~~--~~~~~~~~~~~D~vil   68 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSL--PHTTLIGRHAKTITYYTV--------PH-APAQDIV--VKGYEDVTNTFDVIII   68 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHC--TTCEEEESSCEEEEEESS--------TT-SCCEEEE--EEEGGGCCSCEEEEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeccCcEEEEec--------CC-eecccee--cCchHhcCCCCCEEEE
Confidence            479999999999999999999999  999999999643221100        11 1222232  2444444 78999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH--HhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ--ALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~--~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      |||+++++++++.+.++++++++||+++||++.++.      +..  .++......+.+.||+++.   .+ +..+.+  
T Consensus        69 avk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~------~~~~~v~~g~~~~~a~~~~pg~v~---~~-~~~~~~--  136 (294)
T 3g17_A           69 AVKTHQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH------IPFKNVCQAVVYISGQKKGDVVTH---FR-DYQLRI--  136 (294)
T ss_dssp             CSCGGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG------CCCSCEEECEEEEEEEEETTEEEE---EE-EEEEEE--
T ss_pred             eCCccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh------CCCCcEEEEEEEEEEEEcCCCEEE---EC-CCEEec--
Confidence            999999999999999999989999999999998632      111  1111001134567888763   12 333333  


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC----CcHHHHHHHHHHHHHHHHHHHcCC
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG----NNSMAALVAQGCSEIRWLATKMGA  359 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~----~n~~~al~~~~l~E~~~la~a~Gi  359 (458)
                      ++.+..++++++|+..+++++.++|+.+.+|.|+++|+..+.++ ..++..+    ++....++.+++.|+.++++++|+
T Consensus       137 ~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~a-l~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~  215 (294)
T 3g17_A          137 QDNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSIT-ALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGL  215 (294)
T ss_dssp             ECSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHHHHH-HHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHHHHH-HHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            24567899999999999999999999999999999998433322 2344444    677889999999999999999999


Q ss_pred             CccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 012720          360 KPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARII  438 (458)
Q Consensus       360 ~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll  438 (458)
                      +.+.-.    +.+.+..+......++ +|-+|+.+|+++| +          ...+|+++++|+++|+++|+++++|+++
T Consensus       216 ~l~~~~----~~~~~~~~~~~~~~~~sSM~qD~~~gr~tE-i----------d~i~G~vv~~a~~~gv~~P~~~~l~~ll  280 (294)
T 3g17_A          216 NFSEQT----VDTIMTIYQGYPDEMGTSMYYDIVHQQPLE-V----------EAIQGFIYRRAREHNLDTPYLDTIYSFL  280 (294)
T ss_dssp             CCCHHH----HHHHHHHHHTSCTTCCCHHHHHHHTTCCCS-G----------GGTHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CCCHHH----HHHHHHHHhhcCCCCCCcHHHHHHcCCCcc-H----------HHhhhHHHHHHHHhCCCCChHHHHHHHH
Confidence            843210    0111111111112333 5678888888775 2          2567999999999999999999999999


Q ss_pred             hcC
Q 012720          439 DNE  441 (458)
Q Consensus       439 ~~~  441 (458)
                      +..
T Consensus       281 ~~~  283 (294)
T 3g17_A          281 RAY  283 (294)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.96  E-value=2.1e-29  Score=250.09  Aligned_cols=263  Identities=15%  Similarity=0.167  Sum_probs=197.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |+||+|||+|.||.+||.+|.++|  |+|++|||++++++.+.+.|              +...+++.|+++.+|+||+|
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G--~~v~v~dr~~~~~~~l~~~G--------------a~~a~s~~e~~~~~dvv~~~   66 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQSAVDGLVAAG--------------ASAARSARDAVQGADVVISM   66 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTT--------------CEECSSHHHHHTTCSEEEEC
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCC--CeEEEEcCCHHHHHHHHHcC--------------CEEcCCHHHHHhcCCceeec
Confidence            679999999999999999999999  99999999999999998865              45677999999999999999


Q ss_pred             Ccc-ccHHHHHHh---hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MPV-QFSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp~-~~v~~vl~~---i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      ||. .++++++..   +.+.+++|++||+++ ++.+++.+.+++.+.+. |     +.++.+|...........+..++.
T Consensus        67 l~~~~~v~~V~~~~~g~~~~~~~g~iiId~s-T~~p~~~~~~a~~~~~~-G-----~~~lDaPVsGg~~~A~~G~L~imv  139 (300)
T 3obb_A           67 LPASQHVEGLYLDDDGLLAHIAPGTLVLECS-TIAPTSARKIHAAARER-G-----LAMLDAPVSGGTAGAAAGTLTFMV  139 (300)
T ss_dssp             CSCHHHHHHHHHSSSSSTTSCCC-CEEEECS-CCCHHHHHHHHHHHHTT-T-----CEEEECCEESCHHHHHHTCEEEEE
T ss_pred             CCchHHHHHHHhchhhhhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc-C-----CEEEecCCCCCHHHHHhCCEEEEE
Confidence            996 568888865   677888999999999 58887777777777654 4     345666655443322223445667


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~  362 (458)
                      +++++.+++++++|+..+-++++.++.                 |.+..+|+.+|.+......+++|+..++++.|++++
T Consensus       140 GG~~~~~~~~~p~l~~~g~~i~~~G~~-----------------G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~  202 (300)
T 3obb_A          140 GGDAEALEKARPLFEAMGRNIFHAGPD-----------------GAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAK  202 (300)
T ss_dssp             ESCHHHHHHHHHHHHHHEEEEEEEEST-----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            779999999999999998888887764                 444556677788888889999999999999999999


Q ss_pred             cccccc--CCcch-hhhhccCCC---ccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720          363 TITGLS--GTGDI-MLTCFVNLS---RNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR  436 (458)
Q Consensus       363 ~~~~~~--g~gd~-~~t~~~~~s---rn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~  436 (458)
                      .+.++.  +.+.. ......+..   .......++..+++.+.          ..||+++++++|++.|+++|+.+.+.+
T Consensus       203 ~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l----------~~KDl~l~~~~A~~~g~~~p~~~~a~~  272 (300)
T 3obb_A          203 VLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQL----------MAKDLGLAQEAAQASASSTPMGSLALS  272 (300)
T ss_dssp             HHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHH----------HHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHH----------HHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            888752  22221 111111100   00111122233444432          359999999999999999999998888


Q ss_pred             HHh
Q 012720          437 IID  439 (458)
Q Consensus       437 ll~  439 (458)
                      ++.
T Consensus       273 ~~~  275 (300)
T 3obb_A          273 LYR  275 (300)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            773

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.96  E-value=1.1e-29  Score=252.48  Aligned_cols=292  Identities=13%  Similarity=0.097  Sum_probs=197.4

Q ss_pred             hhcCC-CeEEEECcchHHHHHHHHHHhc-----CCCCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHh
Q 012720          123 ILERT-NKVVVLGGGSFGTAMAAHVANK-----KSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       123 ~~~~~-~kI~IIGaG~mG~~iA~~La~a-----G~~~~V~v~~r~~~~~e~l~~-~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      .|+.+ |||+|||+|+||++||..|+++     | .++|++|+| +++++.+++ .|.......+......+.++++.+ 
T Consensus         3 ~m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g-~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-   79 (317)
T 2qyt_A            3 AMNQQPIKIAVFGLGGVGGYYGAMLALRAAATDG-LLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-   79 (317)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHHHHHTTS-SEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHH-
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCccccCC-CCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCcc-
Confidence            34443 6999999999999999999988     6 269999999 888899988 665433222211122345566654 


Q ss_pred             hcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCC------CEEEEECcccHH
Q 012720          196 ALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQ------PFIALSGPSFAL  269 (458)
Q Consensus       196 a~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~------~~~vl~gP~~a~  269 (458)
                      .++++|+||+|||++++.++++++.+.++++++||+++||++..      +.+.+.++....      ..+.+.||+.+.
T Consensus        80 ~~~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~------~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~  153 (317)
T 2qyt_A           80 EVGTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIA------ERMRTYLPDTVVWKGCVYISARKSAPGLIT  153 (317)
T ss_dssp             HHCCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHH------HHHTTTSCTTTBCEEEEEEEEEEEETTEEE
T ss_pred             ccCCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcH------HHHHHHCCCCcEEEEEEEEEEEEcCCCEEE
Confidence            46899999999999999999999999888899999999998652      344454443110      123345565544


Q ss_pred             HHhccCCeEEEEcc----CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcH--HHHHH
Q 012720          270 ELMNKLPTAMVVAS----KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNS--MAALV  343 (458)
Q Consensus       270 ei~~g~~t~v~i~g----~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~--~~al~  343 (458)
                      +...|  ...++++    .+.+.+ .++++|+..|+++++.+|+...+|.|+++|+...+.+...++..+.+.  ...++
T Consensus       154 ~~~~g--~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~  230 (317)
T 2qyt_A          154 LEADR--ELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPEL  230 (317)
T ss_dssp             EEEEE--EEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHH
T ss_pred             EcCCC--ceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHH
Confidence            33223  2222443    346777 999999999999999999999999999999987777776666544432  34788


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccch-HHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHH
Q 012720          344 AQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRT-VGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQ  422 (458)
Q Consensus       344 ~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~-~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~  422 (458)
                      ..++.|+.++++++|++++..    .+.+.+.++....+++++ +.+|+..|+++|           ....+++++++|+
T Consensus       231 ~~~~~E~~~v~~a~G~~~~~~----~~~~~~~~~~~~~~~~~~sm~~d~~~g~~~E-----------~~~~~g~~~~~a~  295 (317)
T 2qyt_A          231 LSLLEEVAELFRAKYGQVPDD----VVQQLLDKQRKMPPESTSSMHSDFLQGGSTE-----------VETLTGYVVREAE  295 (317)
T ss_dssp             HHHHHHHHHHHHHHTSCCCSS----HHHHHHHHHHHC-------------------------------CTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCChH----HHHHHHHHHhccCCCCCChHHHHHHcCCccC-----------HHHHhhHHHHHHH
Confidence            899999999999999986521    112334333333334443 456666666553           2356799999999


Q ss_pred             HcCCCCcHHHHHHHHHhcC
Q 012720          423 KYNVKMPVLTAVARIIDNE  441 (458)
Q Consensus       423 ~~gv~~P~~~~v~~ll~~~  441 (458)
                      ++|+++|+++.+|++++..
T Consensus       296 ~~gv~~P~~~~~~~~~~~~  314 (317)
T 2qyt_A          296 ALRVDLPMYKRMYRELVSR  314 (317)
T ss_dssp             HTTCCCHHHHHHHHTTCC-
T ss_pred             HcCCCCCHHHHHHHHHHHH
Confidence            9999999999999998754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.96  E-value=3.5e-29  Score=249.38  Aligned_cols=280  Identities=10%  Similarity=0.012  Sum_probs=201.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|+||+++|..|+ +|  ++|++|+|++++++.+++.|++... ++...+..+...   .++...+|+||+|
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g--~~V~~~~r~~~~~~~l~~~G~~~~~-~~~~~~~~~~~~---~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LY--HDVTVVTRRQEQAAAIQSEGIRLYK-GGEEFRADCSAD---TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCHHHHHHHHHHCEEEEE-TTEEEEECCEEE---SSCCSCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cC--CceEEEECCHHHHHHHHhCCceEec-CCCeeccccccc---ccccCCCCEEEEE
Confidence            589999999999999999999 88  9999999999989999888764331 121122222221   2346789999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC------CCEEEEECcccHHHHhccCCeEEE
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR------QPFIALSGPSFALELMNKLPTAMV  280 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~------~~~~vl~gP~~a~ei~~g~~t~v~  280 (458)
                      ||+++++++++.+.+. .+++ ||+++||++.+      +.+.+.++...      ...+...+|+...+.+.|.   +.
T Consensus        75 vK~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~------e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~---~~  143 (307)
T 3ego_A           75 VKQHQLQSVFSSLERI-GKTN-ILFLQNGMGHI------HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGA---IK  143 (307)
T ss_dssp             CCGGGHHHHHHHTTSS-CCCE-EEECCSSSHHH------HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCC---EE
T ss_pred             eCHHHHHHHHHHhhcC-CCCe-EEEecCCccHH------HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeee---EE
Confidence            9999999999999875 5666 99999999864      34555555321      1123455777665443332   23


Q ss_pred             EccC--CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC----cHHHHHHHHHHHHHHHHH
Q 012720          281 VASK--DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN----NSMAALVAQGCSEIRWLA  354 (458)
Q Consensus       281 i~g~--d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~----n~~~al~~~~l~E~~~la  354 (458)
                      ++..  ..+.++++.++|+..++++..++|+....|.|+++|+..++.+....++++.    .....++..++.|+.+++
T Consensus       144 iG~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va  223 (307)
T 3ego_A          144 WSAFDDAEPDRLNILFQHNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRIL  223 (307)
T ss_dssp             EEECTTCCGGGGTTTTSSCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcHHHHHHHHHhhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHH
Confidence            4432  2455677888888999999999999999999999999877777777777663    345789999999999999


Q ss_pred             HHcCCCccccccccCCcchhhhhccCCCcc-chHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHH
Q 012720          355 TKMGAKPATITGLSGTGDIMLTCFVNLSRN-RTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA  433 (458)
Q Consensus       355 ~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn-~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~  433 (458)
                      ++.+  ++.+.+.     .+..+... ..+ .+|-+|+.+|+++| +          ...+|+++++|+++|+++|++++
T Consensus       224 ~~~~--~~~~~~~-----~~~~~~~~-~~~~sSM~qD~~~gr~tE-i----------d~i~G~vv~~a~~~gv~tP~~~~  284 (307)
T 3ego_A          224 KLEN--EEKAWER-----VQAVCGQT-KENRSSMLVDVIGGRQTE-A----------DAIIGYLLKEASLQGLDAVHLEF  284 (307)
T ss_dssp             TCSC--HHHHHHH-----HHHHHHHT-TTCCCHHHHHHHHTCCCS-H----------HHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             hccC--hHHHHHH-----HHHHHHhc-CCCCchHHHHHHcCCccc-H----------HHhhhHHHHHHHHcCCCCcHHHH
Confidence            8653  2222210     11111111 122 24667887777765 2          36679999999999999999999


Q ss_pred             HHHHHhcCCC
Q 012720          434 VARIIDNELT  443 (458)
Q Consensus       434 v~~ll~~~~~  443 (458)
                      +|++++..+.
T Consensus       285 l~~li~~~e~  294 (307)
T 3ego_A          285 LYGSIKALER  294 (307)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHHh
Confidence            9999987654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.95  E-value=2e-28  Score=242.87  Aligned_cols=256  Identities=14%  Similarity=0.140  Sum_probs=185.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.||.+||.+|+++|  |+|++|||++++++.+.+.|              +...+++.|+++.+|+||+|
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~G--------------~~~~~s~~e~~~~~dvvi~~   68 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAG--YELVVWNRTASKAEPLTKLG--------------ATVVENAIDAITPGGIVFSV   68 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT--CEEEEC-------CTTTTTT--------------CEECSSGGGGCCTTCEEEEC
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcC--------------CeEeCCHHHHHhcCCceeee
Confidence            358999999999999999999999  99999999999887776654              45677999999999999999


Q ss_pred             Cccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720          207 MPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (458)
Q Consensus       207 Vp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~  284 (458)
                      +|+. ++++++ ..+.+.+++++++|+++ ++.+++.+.+.+.+.+. |     +.++.+|...........+..++.++
T Consensus        69 l~~~~~~~~v~~~~~~~~~~~~~iiid~s-T~~p~~~~~~~~~~~~~-g-----~~~ldapVsGg~~~a~~g~l~im~gG  141 (297)
T 4gbj_A           69 LADDAAVEELFSMELVEKLGKDGVHVSMS-TISPETSRQLAQVHEWY-G-----AHYVGAPIFARPEAVRAKVGNICLSG  141 (297)
T ss_dssp             CSSHHHHHHHSCHHHHHHHCTTCEEEECS-CCCHHHHHHHHHHHHHT-T-----CEEEECCEECCHHHHHHTCCEEEEEE
T ss_pred             ccchhhHHHHHHHHHHhhcCCCeEEEECC-CCChHHHHHHHHHHHhc-C-----CceecCCcCCCccccccccceeeccc
Confidence            9974 466655 45778888999999999 58888777777777654 4     34566666554322222223355667


Q ss_pred             CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccc
Q 012720          285 DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATI  364 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~  364 (458)
                      +.+.+++++++|+..+.++++..+..                |.+..+|+.+|.+......+++|+..++++.|+|++.+
T Consensus       142 ~~~~~~~~~~~l~~~g~~i~~~g~~~----------------G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~  205 (297)
T 4gbj_A          142 NAGAKERIKPIVENFVKGVFDFGDDP----------------GAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSI  205 (297)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEECCSCT----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             chhHHHHHHHHHHHhhCCeEEecCCc----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            89999999999999998888766422                44555677788888888999999999999999999998


Q ss_pred             cccc--CCcchhhhhccCCCccchHHHHhh------CCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720          365 TGLS--GTGDIMLTCFVNLSRNRTVGVRLG------SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR  436 (458)
Q Consensus       365 ~~~~--g~gd~~~t~~~~~srn~~~g~~l~------~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~  436 (458)
                      +++.  +.+....      .++  .+..+.      .|++++          ...||+++++++|++.|+++|+.+.+++
T Consensus       206 ~~~l~~~~~~s~~------~~~--~~~~~~~~~~~p~~f~~~----------l~~KDl~l~~~~A~~~g~~~p~~~~~~~  267 (297)
T 4gbj_A          206 YEMLTSTLFAAPI------FQN--YGKLVASNTYEPVAFRFP----------LGLKDINLTLQTASDVNAPMPFADIIRN  267 (297)
T ss_dssp             HHHHHTTTTCSHH------HHH--HHHHHHHTCCCSCSSBHH----------HHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHhhcccCch------hhc--cCccccCCCCCCccchhH----------HHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            8752  1111100      000  112221      133443          2459999999999999999999999988


Q ss_pred             HHh
Q 012720          437 IID  439 (458)
Q Consensus       437 ll~  439 (458)
                      ++.
T Consensus       268 ~~~  270 (297)
T 4gbj_A          268 RFI  270 (297)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.95  E-value=2.6e-27  Score=246.63  Aligned_cols=281  Identities=16%  Similarity=0.177  Sum_probs=217.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~  199 (458)
                      ..+|+|||+|+||+++|..|+++|  |+|++|||++++++.+++ +.++.|+++..       .+.++++++|+++++++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G--~~V~~~D~~~~kv~~l~~-g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~   84 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFG--HEVVCVDKDARKIELLHQ-NVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKD   84 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHTT-TCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHhc-CCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhc
Confidence            468999999999999999999999  999999999999999987 56777777754       35678999999989999


Q ss_pred             CCEEEEcCccc-----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccH
Q 012720          200 ADYCLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA  268 (458)
Q Consensus       200 aDiVilaVp~~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a  268 (458)
                      ||+||+|||+.           +++++++++.+.++++++||..+ |+.+++.+.+++.+.+..+.  .++.++++|.++
T Consensus        85 aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~--~d~~v~~~Pe~a  161 (446)
T 4a7p_A           85 ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPN--SGAKVVSNPEFL  161 (446)
T ss_dssp             CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTT--SCCEEEECCCCC
T ss_pred             CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCC--CCceEEeCcccc
Confidence            99999998864           48999999999999999999988 89999988888888776443  467899999998


Q ss_pred             HHHhc----cCCeEEEEccCCHHHHHHHHHHHhcCCCe---EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012720          269 LELMN----KLPTAMVVASKDRKLANAVQQLLASKHLR---ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (458)
Q Consensus       269 ~ei~~----g~~t~v~i~g~d~e~~e~l~~lL~~~g~~---v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~a  341 (458)
                      .+...    +.++.+++++.+++.+++++++|+..+..   ++...|+.++|..|                 +.+|.+.+
T Consensus       162 ~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~K-----------------l~~N~~~a  224 (446)
T 4a7p_A          162 REGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIK-----------------YAANAFLA  224 (446)
T ss_dssp             CTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHH-----------------HHHHHHHH
T ss_pred             cccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHH-----------------HHHHHHHH
Confidence            76432    45666777777789999999999876543   46677887766655                 45567778


Q ss_pred             HHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHH
Q 012720          342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALA  421 (458)
Q Consensus       342 l~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA  421 (458)
                      +..+.++|+..+|+++|+|++++.+..+....+.      .+.+.+|.-+ .|.++             .||.++++..|
T Consensus       225 ~~ia~~nE~~~l~~~~GiD~~~v~~~~~~~~rig------~~~l~pg~G~-gg~c~-------------~KD~~~l~~~A  284 (446)
T 4a7p_A          225 VKITFINEIADLCEQVGADVQEVSRGIGMDNRIG------GKFLHAGPGY-GGSCF-------------PKDTLALMKTA  284 (446)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTC---------CCCCCSCC-CTTTH-------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCC------CccCCCCCCc-chhhH-------------HHHHHHHHHHH
Confidence            8899999999999999999998887533211000      0000111100 12222             38999999999


Q ss_pred             HHcCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 012720          422 QKYNVKMPVLTAVARIIDNELTPKKAVLELM  452 (458)
Q Consensus       422 ~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~  452 (458)
                      +++|+++|+.+++.++  +...+.-+++++.
T Consensus       285 ~~~g~~~~l~~~~~~i--N~~~~~~~~~~i~  313 (446)
T 4a7p_A          285 ADNETPLRIVEATVQV--NDARKRAMGRKVI  313 (446)
T ss_dssp             HHTTCCCHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHH--HHHHHHHHHHHHH
Confidence            9999999999999888  4445555555544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.95  E-value=3.4e-27  Score=246.61  Aligned_cols=272  Identities=19%  Similarity=0.195  Sum_probs=210.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C-----CCceEEeCCHHhhcCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~--l-----~~~i~a~~~~~ea~~~  199 (458)
                      +|||+|||+|.||.++|..|+++|  ++|++|||++++++.+++ +....+.++..  +     +.++.+++|+++++++
T Consensus         2 ~mkI~VIG~G~vG~~lA~~La~~G--~~V~~~D~~~~~v~~l~~-g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~   78 (450)
T 3gg2_A            2 SLDIAVVGIGYVGLVSATCFAELG--ANVRCIDTDRNKIEQLNS-GTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPE   78 (450)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH-TCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHc-CCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhc
Confidence            379999999999999999999999  999999999999999987 55555655533  1     4568889999998999


Q ss_pred             CCEEEEcCccc----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECccc
Q 012720          200 ADYCLHAMPVQ----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSF  267 (458)
Q Consensus       200 aDiVilaVp~~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~  267 (458)
                      +|+||+|||+.          +++++++++.++++++++||+.+ ++.+++.+.+.+.+.+..+..  ..++.+.++|.+
T Consensus        79 aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~  157 (450)
T 3gg2_A           79 ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEF  157 (450)
T ss_dssp             CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred             CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEEechhh
Confidence            99999999986          79999999999999999999988 699888888888887653211  145789999998


Q ss_pred             HHHHhc----cCCeEEEEccCCHHHHHHHHHHHhcCCC--eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012720          268 ALELMN----KLPTAMVVASKDRKLANAVQQLLASKHL--RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (458)
Q Consensus       268 a~ei~~----g~~t~v~i~g~d~e~~e~l~~lL~~~g~--~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~a  341 (458)
                      +.+...    ..++.+++++.+++.+++++++|+..+.  ..+...|+.++++.|                 +.+|.+.+
T Consensus       158 a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~K-----------------l~~N~~~a  220 (450)
T 3gg2_A          158 LKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTK-----------------YAANAMLA  220 (450)
T ss_dssp             CCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHH-----------------HHHHHHHH
T ss_pred             hcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHH-----------------HHHHHHHH
Confidence            875422    4555667787788999999999997654  145677887777755                 45566778


Q ss_pred             HHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHH
Q 012720          342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALA  421 (458)
Q Consensus       342 l~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA  421 (458)
                      +..++++|+..+|+++|+|++++.+..+....+      ..+.+.+|.  +-|-.+            ..||.++++..|
T Consensus       221 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~ri------g~~~~~pg~--G~gg~c------------~~KD~~~l~~~a  280 (450)
T 3gg2_A          221 TRISFMNDVANLCERVGADVSMVRLGIGSDSRI------GSKFLYPGC--GYGGSC------------FPKDVKALIRTA  280 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHHHHHTSTTT------CSSSCCCSS--CCCSSH------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHcCCCCC------CcccCCCCC--CCCccc------------HHhhHHHHHHHH
Confidence            889999999999999999999888754322111      001111111  111122            148999999999


Q ss_pred             HHcCCCCcHHHHHHHHHh
Q 012720          422 QKYNVKMPVLTAVARIID  439 (458)
Q Consensus       422 ~~~gv~~P~~~~v~~ll~  439 (458)
                      +++|+++|+.+++.++-.
T Consensus       281 ~~~g~~~~l~~~~~~iN~  298 (450)
T 3gg2_A          281 EDNGYRMEVLEAVERVNE  298 (450)
T ss_dssp             HHTTCCCHHHHHHHHHHH
T ss_pred             HHcCCCcHHHHHHHHHHH
Confidence            999999999999998843

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.95  E-value=2.1e-27  Score=236.66  Aligned_cols=280  Identities=16%  Similarity=0.152  Sum_probs=198.2

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .+..||||+|||+|.||..||..|+++|  ++|++|||++++++.+.+.|              +..+++++++++++|+
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g--------------~~~~~~~~~~~~~aDv   80 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNG--FKVTVWNRTLSKCDELVEHG--------------ASVCESPAEVIKKCKY   80 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGGGGHHHHHTT--------------CEECSSHHHHHHHCSE
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CeEcCCHHHHHHhCCE
Confidence            3445789999999999999999999999  99999999999988888654              3566789998999999


Q ss_pred             EEEcCcc-ccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeE
Q 012720          203 CLHAMPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTA  278 (458)
Q Consensus       203 VilaVp~-~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~  278 (458)
                      ||+|||. .++++++   +++.+.++++++||+++ ++.+.+.+.+.+.+.+. |.     .++..|...........+.
T Consensus        81 vi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~-g~-----~~v~~pv~g~~~~a~~g~l  153 (310)
T 3doj_A           81 TIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAITGK-GG-----RFVEGPVSGSKKPAEDGQL  153 (310)
T ss_dssp             EEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHT-TC-----EEEECCEECCHHHHHHTCE
T ss_pred             EEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHc-CC-----EEEeCCCCCChhHHhcCCe
Confidence            9999996 5788888   78888899999999998 56666656666666553 32     3444454432221111233


Q ss_pred             EEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcC
Q 012720          279 MVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMG  358 (458)
Q Consensus       279 v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~G  358 (458)
                      .++.+++++.+++++++|+..|.++++.++....++.|                 +.+|.+......+++|+..++++.|
T Consensus       154 ~i~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~K-----------------l~~N~~~~~~~~~~~Ea~~l~~~~G  216 (310)
T 3doj_A          154 IILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMK-----------------LIVNMIMGSMMNAFSEGLVLADKSG  216 (310)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34555688999999999999998888887765444544                 4455556666788999999999999


Q ss_pred             CCccccccccCCcchhhhhccCCCccchHHHHhhCC-CChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          359 AKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       359 i~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g-~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      ++++++.++.+.+    ++.+...++  .+..+.++ +...      .....+.||+++++++|+++|+++|+++.++++
T Consensus       217 ~d~~~~~~~~~~~----~~~s~~~~~--~~~~~~~~~~~~~------f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~  284 (310)
T 3doj_A          217 LSSDTLLDILDLG----AMTNPMFKG--KGPSMNKSSYPPA------FPLKHQQKDMRLALALGDENAVSMPVAAAANEA  284 (310)
T ss_dssp             SCHHHHHHHHHHS----TTCCHHHHH--HHHHHHTTCCCCS------SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc----ccccHHHHH--HhhhhhcCCCCCC------ccHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            9999887652211    011100011  12223222 1110      012345699999999999999999999999998


Q ss_pred             Hhc-------CCCHHHHHHHHhcC
Q 012720          438 IDN-------ELTPKKAVLELMSL  454 (458)
Q Consensus       438 l~~-------~~~~~~~~~~l~~~  454 (458)
                      +..       ..+...+++.+...
T Consensus       285 ~~~a~~~g~g~~d~~~~~~~~~~~  308 (310)
T 3doj_A          285 FKKARSLGLGDLDFSAVIEAVKFS  308 (310)
T ss_dssp             HHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred             HHHHHHcCCCCcCHHHHHHHHHhc
Confidence            853       33445566665543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.94  E-value=2.6e-26  Score=241.65  Aligned_cols=275  Identities=20%  Similarity=0.212  Sum_probs=209.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C-----CCceEEeCCHHhhcCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~--l-----~~~i~a~~~~~ea~~~  199 (458)
                      .|||+|||+|+||+.+|..|+++|  ++|++||+++++++.+++.+ ...+.++..  +     +.++.+++|+++++++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G--~~V~~~d~~~~~v~~l~~~~-~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~   84 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIG--HDVFCLDVDQAKIDILNNGG-VPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAH   84 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhcccCCEEEECCHHHHhhc
Confidence            589999999999999999999999  99999999999999998865 444555432  1     2357889999888899


Q ss_pred             CCEEEEcCcc----------ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh--CCCCCCEEEEECccc
Q 012720          200 ADYCLHAMPV----------QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL--RNPRQPFIALSGPSF  267 (458)
Q Consensus       200 aDiVilaVp~----------~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~l--g~~~~~~~vl~gP~~  267 (458)
                      +|+||+|||+          .++++++++|.++++++++||..+ |+.+++.+.+.+.+.+.+  |.....+.+.++|.+
T Consensus        85 aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S-Tv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~  163 (478)
T 2y0c_A           85 GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS-TVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEF  163 (478)
T ss_dssp             CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred             CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CcCCCchHHHHHHHHHHhcCCCCCccEEEEEChhh
Confidence            9999999998          789999999999999999999888 898888777888877653  310135678999988


Q ss_pred             HHHHhc----cCCeEEEEccCCH----HHHHHHHHHHhcCCC--eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 012720          268 ALELMN----KLPTAMVVASKDR----KLANAVQQLLASKHL--RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN  337 (458)
Q Consensus       268 a~ei~~----g~~t~v~i~g~d~----e~~e~l~~lL~~~g~--~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n  337 (458)
                      +.+...    +.+..+++++.++    +.+++++++|+....  .++...|+..++|.|++.|                 
T Consensus       164 ~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N-----------------  226 (478)
T 2y0c_A          164 LKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAAN-----------------  226 (478)
T ss_dssp             CCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHH-----------------
T ss_pred             hcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHH-----------------
Confidence            765322    4455566777645    788999999986432  4777889999999886665                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHH
Q 012720          338 SMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAV  417 (458)
Q Consensus       338 ~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v  417 (458)
                      .+.++...+++|+..+|+++|++++++.+..+....      ...+++..|..+ .|.++             .||.+++
T Consensus       227 ~~~a~~ia~~nE~~~la~~~Gid~~~v~~~i~~~~r------ig~~~~~pG~g~-gg~c~-------------~kD~~~l  286 (478)
T 2y0c_A          227 AMLATRISFMNELANLADRFGADIEAVRRGIGSDPR------IGYHFLYAGCGY-GGSCF-------------PKDVEAL  286 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTT------TCSTTCCCSSCC-CSSSH-------------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCc------cCcccCCCCccc-ccCcC-------------HHHHHHH
Confidence            456777889999999999999998877653221100      001122222221 12232             2789999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHhcCC
Q 012720          418 IALAQKYNVKMPVLTAVARIIDNEL  442 (458)
Q Consensus       418 ~~lA~~~gv~~P~~~~v~~ll~~~~  442 (458)
                      +++|+++|+++|+++++++++....
T Consensus       287 ~~~A~~~gv~~pl~~~v~~in~~~~  311 (478)
T 2y0c_A          287 IRTADEHGQSLQILKAVSSVNATQK  311 (478)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhH
Confidence            9999999999999999999987643

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.94  E-value=1.6e-27  Score=233.48  Aligned_cols=283  Identities=13%  Similarity=0.133  Sum_probs=194.2

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|+||+++|..|+++|  ++|++|+|++++++.+...+.+     +..++..+. .++. ++++++|+||+||
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~~~~~l~~~~~~-----~~~~~~~~~-~~~~-~~~~~~d~vi~~v   71 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQPYCSVNLVETD-----GSIFNESLT-ANDP-DFLATSDLLLVTL   71 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSEEEEEEECTT-----SCEEEEEEE-ESCH-HHHHTCSEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC--CCEEEEEcCccceeeEEEEcCC-----Cceeeeeee-ecCc-cccCCCCEEEEEe
Confidence            68999999999999999999999  9999999998654443322210     100111122 2444 4578999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh-CCCCCCEEEEECcccHHHHhccCCeEEEEccCCH
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL-RNPRQPFIALSGPSFALELMNKLPTAMVVASKDR  286 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~l-g~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~  286 (458)
                      |++++.++++++.+.++++++||+++||++..  +.+.+.+.+.+ |.. ...+.+.|| .+.+...|. ..+...+.+.
T Consensus        72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~--~~l~~~~~~~~~g~~-~~~~~~~~p-~~~~~~~g~-~~i~~~~~~~  146 (291)
T 1ks9_A           72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTI--EELQNIQQPLLMGTT-THAARRDGN-VIIHVANGI-THIGPARQQD  146 (291)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT--GGGTTCCSCEEEEEE-CCEEEEETT-EEEEEECCC-EEEEESSGGG
T ss_pred             cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcH--HHHHHhcCCeEEEEE-eEccEEcCC-EEEEecccc-eEEccCCCCc
Confidence            99999999999999999999999999998653  12222221111 111 113457888 554444443 2222223455


Q ss_pred             HHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC-cHHHHHHHHHHHHHHHHHHHcCCCc--cc
Q 012720          287 KLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN-NSMAALVAQGCSEIRWLATKMGAKP--AT  363 (458)
Q Consensus       287 e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~-n~~~al~~~~l~E~~~la~a~Gi~~--~~  363 (458)
                      +.+++++++|+..|+++.+.+|+.+..|.|++.|....+.....+...+. .....++..++.|+.++++++|+++  +.
T Consensus       147 ~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~  226 (291)
T 1ks9_A          147 GDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAED  226 (291)
T ss_dssp             TTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             chHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence            67789999999999999999999999999999997665554444433221 0024788999999999999999986  23


Q ss_pred             cccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720          364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN  440 (458)
Q Consensus       364 ~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~  440 (458)
                      +.+  .+.+.+..+...   ..++-.++..|+++|           ..++.|+++++|+++|+++|+++.+|++++.
T Consensus       227 ~~~--~~~~~~~~~~~~---~ssm~~d~~~g~~~e-----------~~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~  287 (291)
T 1ks9_A          227 LRD--YVMQVIDATAEN---ISSMLQDIRALRHTE-----------IDYINGFLLRRARAHGIAVPENTRLFEMVKR  287 (291)
T ss_dssp             HHH--HHHHHHHHTTTC---CCHHHHHHHTTCCCS-----------GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHhcCCCC---CChHHHHHHcCCccH-----------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            221  122222222221   123446777776653           2367899999999999999999999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.94  E-value=8.4e-27  Score=230.89  Aligned_cols=264  Identities=13%  Similarity=0.085  Sum_probs=187.9

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |..+|||+|||+|.||..||..|+++|  ++|++|||++++++.+.+.|              +..+++++++++ +|+|
T Consensus        12 M~~~~~I~vIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~-aDvv   74 (296)
T 3qha_A           12 TTEQLKLGYIGLGNMGAPMATRMTEWP--GGVTVYDIRIEAMTPLAEAG--------------ATLADSVADVAA-ADLI   74 (296)
T ss_dssp             ---CCCEEEECCSTTHHHHHHHHTTST--TCEEEECSSTTTSHHHHHTT--------------CEECSSHHHHTT-SSEE
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CEEcCCHHHHHh-CCEE
Confidence            434579999999999999999999999  99999999999888888754              456779999888 9999


Q ss_pred             EEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       204 ilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |+|||. .+++++++++.+.++++++||+++ ++.+.+.+.+.+.+.+. |     +.++.+|...........+..++.
T Consensus        75 i~~vp~~~~~~~v~~~l~~~l~~g~ivv~~s-t~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~~  147 (296)
T 3qha_A           75 HITVLDDAQVREVVGELAGHAKPGTVIAIHS-TISDTTAVELARDLKAR-D-----IHIVDAPVSGGAAAAARGELATMV  147 (296)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCCTTCEEEECS-CCCHHHHHHHHHHHGGG-T-----CEEEECCEESCHHHHHHTCEEEEE
T ss_pred             EEECCChHHHHHHHHHHHHhcCCCCEEEEeC-CCCHHHHHHHHHHHHHc-C-----CEEEeCCCcCCHHHHhcCCccEEe
Confidence            999995 578999999999999999999998 46665555555555443 3     234555554332221122234455


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~  362 (458)
                      +++++.+++++++|+..+.++++.++....                 ..+|+.+|.+......+++|+..++++.|++++
T Consensus       148 gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a-----------------~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~  210 (296)
T 3qha_A          148 GADREVYERIKPAFKHWAAVVIHAGEPGAG-----------------TRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQ  210 (296)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEESTTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             cCCHHHHHHHHHHHHHHcCCeEEcCChhHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            668999999999999999888877665333                 334556667777788899999999999999999


Q ss_pred             cc------cccc--CCcchhhh-hccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHH
Q 012720          363 TI------TGLS--GTGDIMLT-CFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA  433 (458)
Q Consensus       363 ~~------~~~~--g~gd~~~t-~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~  433 (458)
                      ++      .++.  +.+..+.. ......+ +..      |+......     .....||+++++++|+++|+++|+.+.
T Consensus       211 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~-~~~------~f~~~~~~-----~~~~~KD~~~~~~~a~~~g~~~p~~~~  278 (296)
T 3qha_A          211 ALGRVVRHTDALTGGPGAIMVRDNMKDLEP-DNF------LYQPFLHT-----RGLGEKDLSLALALGEAVSVDLPLARL  278 (296)
T ss_dssp             HHHHHHHHHHHHHCCGGGGCCCSSCSCCCT-TST------THHHHHHH-----HHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHhhhcchHHHHhcCcccCHHhhchhhhhc-CCC------CCchhhhh-----hHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            98      6542  22221100 0001111 111      11110000     012469999999999999999999999


Q ss_pred             HHHHHhc
Q 012720          434 VARIIDN  440 (458)
Q Consensus       434 v~~ll~~  440 (458)
                      +++++..
T Consensus       279 ~~~~~~~  285 (296)
T 3qha_A          279 AYEGLAA  285 (296)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998854

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.94  E-value=7.4e-27  Score=229.91  Aligned_cols=261  Identities=14%  Similarity=0.124  Sum_probs=189.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||||+|||+|.||..||..|+++|  ++|++|+|++++++.+.+.|              +..+++++++++++|+||+|
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~advvi~~   64 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAG--FDVTVWNRNPAKCAPLVALG--------------ARQASSPAEVCAACDITIAM   64 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHT--CCEEEECSSGGGGHHHHHHT--------------CEECSCHHHHHHHCSEEEEC
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHHcCCEEEEE
Confidence            479999999999999999999999  99999999999988888764              35667899988999999999


Q ss_pred             Cccc-cHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MPVQ-FSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp~~-~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      ||.. ++++++   +++.+.++++++||++++ ..+.+.+.+.+.+.+. |     ..++.+|...........+..++.
T Consensus        65 v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~~  137 (287)
T 3pdu_A           65 LADPAAAREVCFGANGVLEGIGGGRGYIDMST-VDDETSTAIGAAVTAR-G-----GRFLEAPVSGTKKPAEDGTLIILA  137 (287)
T ss_dssp             CSSHHHHHHHHHSTTCGGGTCCTTCEEEECSC-CCHHHHHHHHHHHHHT-T-----CEEEECCEECCHHHHHHTCEEEEE
T ss_pred             cCCHHHHHHHHcCchhhhhcccCCCEEEECCC-CCHHHHHHHHHHHHHc-C-----CEEEECCccCCHHHHhcCCEEEEE
Confidence            9975 789998   788888999999999984 5555555555555543 3     234555554332222222334455


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~  362 (458)
                      +++++.+++++++|+..|.++++.++.....+.|                 +.+|.+......+++|+..++++.|++++
T Consensus       138 gg~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~K-----------------l~~N~~~~~~~~~~~Ea~~l~~~~G~~~~  200 (287)
T 3pdu_A          138 AGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMK-----------------LVVNMIMGQMMTALGEGMALGRNCGLDGG  200 (287)
T ss_dssp             EECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEcCCCChHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            6688999999999999998888877754444444                 45556666778899999999999999999


Q ss_pred             ccccccCCcchhhhhccCCCccchHHHHhhCC-CChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh
Q 012720          363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID  439 (458)
Q Consensus       363 ~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g-~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~  439 (458)
                      ++.++.+.+.    +.+...++  .+..+.++ +...      .....+.||+++++++|+++|+++|+++.+++++.
T Consensus       201 ~~~~~~~~~~----~~s~~~~~--~~~~~~~~~~~~~------~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~  266 (287)
T 3pdu_A          201 QLLEVLDAGA----MANPMFKG--KGQMLLSGEFPTS------FPLKHMQKDLRLAVELGDRLGQPLHGAATANESFK  266 (287)
T ss_dssp             HHHHHHHHST----TCCHHHHH--HHHHHHHTCCCCS------SBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcc----ccChHHHh--hccccccCCCCCC------CcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            8877532110    11110111  12222221 1100      11234569999999999999999999999999885

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.94  E-value=3.2e-26  Score=229.18  Aligned_cols=270  Identities=19%  Similarity=0.210  Sum_probs=195.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+|||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+.|              +..+++++++++++|+||+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~l~~~g--------------~~~~~~~~e~~~~aDvVi~   93 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAG--YALQVWNRTPARAASLAALG--------------ATIHEQARAAARDADIVVS   93 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTT--------------CEEESSHHHHHTTCSEEEE
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCC--CeEEEEcCCHHHHHHHHHCC--------------CEeeCCHHHHHhcCCEEEE
Confidence            4689999999999999999999999  99999999999999888754              4567799999999999999


Q ss_pred             cCcc-ccHHHHHH--hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          206 AMPV-QFSSSFLE--GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       206 aVp~-~~v~~vl~--~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |||. ..+++++.  ++.+.++++++||+++ +..+.+.+.+.+.+.+. |     ..++.+|...........+..++.
T Consensus        94 ~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~s-t~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~i~~  166 (320)
T 4dll_A           94 MLENGAVVQDVLFAQGVAAAMKPGSLFLDMA-SITPREARDHAARLGAL-G-----IAHLDTPVSGGTVGAEQGTLVIMA  166 (320)
T ss_dssp             CCSSHHHHHHHHTTTCHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHHT-T-----CEEEECCEECHHHHHHHTCEEEEE
T ss_pred             ECCCHHHHHHHHcchhHHhhCCCCCEEEecC-CCCHHHHHHHHHHHHHc-C-----CEEEeCCCcCCHhHHhcCCeeEEe
Confidence            9996 57888887  7888899999999998 45555555555555543 3     345666666543322122334455


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~  362 (458)
                      +++++.+++++++|+.. .++.+.++....++.                 |+.+|.+......+++|+..++++.|++++
T Consensus       167 gg~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~-----------------Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~  228 (320)
T 4dll_A          167 GGKPADFERSLPLLKVF-GRATHVGPHGSGQLT-----------------KLANQMIVGITIGAVAEALLFATKGGADMA  228 (320)
T ss_dssp             ESCHHHHHHHHHHHHHH-EEEEEEESTTHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTSCCHH
T ss_pred             CCCHHHHHHHHHHHHhc-CCEEEeCCccHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            66889999999999988 777777665433343                 445566667778899999999999999999


Q ss_pred             ccccccCCcchhhhhccCCCccc-hHHHHhh-----CCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720          363 TITGLSGTGDIMLTCFVNLSRNR-TVGVRLG-----SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR  436 (458)
Q Consensus       363 ~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~-----~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~  436 (458)
                      ++.++...+.       ..++.+ ..+..+.     .|++..          ...||+++++++|+++|+++|+++.+.+
T Consensus       229 ~~~~~~~~~~-------~~s~~~~~~~~~~l~~~~~~gf~~~----------~~~KDl~~~~~~a~~~g~~~p~~~~~~~  291 (320)
T 4dll_A          229 KVKEAITGGF-------ADSRVLQLHGQRMVERDFAPRARLS----------IQLKDMRNALATAQEIGFDAPITGLFEQ  291 (320)
T ss_dssp             HHHHHHTTST-------TCBHHHHTHHHHHHTTCCCCSSBHH----------HHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHccc-------ccCHHHHHhhhhhccCCCCCcccHH----------HHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            8877532110       000000 0111221     233332          2469999999999999999999999999


Q ss_pred             HHhc-------CCCHHHHHHHHhc
Q 012720          437 IIDN-------ELTPKKAVLELMS  453 (458)
Q Consensus       437 ll~~-------~~~~~~~~~~l~~  453 (458)
                      ++..       ..+...+++.+..
T Consensus       292 ~~~~a~~~g~g~~d~~~~~~~~~~  315 (320)
T 4dll_A          292 LYAEGVEHGLTDLDQSGLFVELAS  315 (320)
T ss_dssp             HHHHHHTTTTTTSBGGGHHHHHHH
T ss_pred             HHHHHHhcCCCCcCHHHHHHHHHH
Confidence            8853       3344455555543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.94  E-value=2.7e-26  Score=227.87  Aligned_cols=262  Identities=15%  Similarity=0.123  Sum_probs=187.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|.||.+||..|+++|  ++|++|+|++++++.+.+.|..             ..+++++++++++|+||+|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~-------------~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAG--LSTWGADLNPQACANLLAEGAC-------------GAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTCS-------------EEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHcCCc-------------cccCCHHHHHhcCCEEEEE
Confidence            579999999999999999999999  9999999999999998876531             1256888888999999999


Q ss_pred             Ccc-ccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MPV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp~-~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      ||. ..++.++   +++.+.++++++||++++ +.+.+.+.+.+.+.+. |     ..++..|...........+..++.
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~-g-----~~~~~~pv~g~~~~a~~g~l~~~~  144 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAVMVSST-ISSADAQEIAAALTAL-N-----LNMLDAPVSGGAVKAAQGEMTVMA  144 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEEEECSC-CCHHHHHHHHHHHHTT-T-----CEEEECCEESCHHHHHTTCEEEEE
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHc-C-----CeEEeCCCCCChhhhhcCCeEEEe
Confidence            997 4788888   788889999999999984 5665555555555442 3     234445544332222233344556


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCC-hHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~d-i~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~  361 (458)
                      +++++.+++++++|+..|.++++.++ ....+|.|+                 .+|.+..+...+++|+..++++.|+++
T Consensus       145 gg~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl-----------------~~N~~~~~~~~~~~Ea~~l~~~~G~d~  207 (303)
T 3g0o_A          145 SGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKI-----------------IHQLLAGVHIAAAAEAMALAARAGIPL  207 (303)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             CCCHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            66899999999999999988877765 554555554                 445555666789999999999999999


Q ss_pred             cccccccCCcchhhhhccCCCccchHHHHhhCC-CChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh
Q 012720          362 ATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID  439 (458)
Q Consensus       362 ~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g-~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~  439 (458)
                      +++.++.+.+    ++.+...++  .+..+.++ +...      .......||+++++++|+++|+++|+++.+++++.
T Consensus       208 ~~~~~~~~~~----~~~s~~~~~--~~~~~~~~~~~~~------~~~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~  274 (303)
T 3g0o_A          208 DVMYDVVTHA----AGNSWMFEN--RMQHVVDGDYTPR------SAVDIFVKDLGLVADTAKALRFPLPLASTALNMFT  274 (303)
T ss_dssp             HHHHHHHTTS----TTCCHHHHH--HHHHHHTTCCCCS------SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhc----ccCCHHHHh--hhHHHhcCCCCCC------CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            9887753221    011110111  11222222 1110      11234569999999999999999999999999885

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.94  E-value=3.3e-26  Score=225.29  Aligned_cols=261  Identities=14%  Similarity=0.105  Sum_probs=188.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+.|              +..+++++++++++|+||+||
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAG--CSVTIWNRSPEKAEELAALG--------------AERAATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGGGGHHHHHTT--------------CEECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEEEc
Confidence            79999999999999999999999  99999999999988888754              456678999889999999999


Q ss_pred             c-cccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          208 P-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       208 p-~~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      | ...+++++   +++.+.++++++||+++ ++.+.+.+.+.+.+.+. |.     .++..|...........+..++.+
T Consensus        66 p~~~~~~~v~~~~~~l~~~l~~~~~vi~~s-t~~~~~~~~~~~~~~~~-g~-----~~~~~pv~g~~~~a~~g~l~~~~g  138 (287)
T 3pef_A           66 ADPAAAEEVCFGKHGVLEGIGEGRGYVDMS-TVDPATSQRIGVAVVAK-GG-----RFLEAPVSGSKKPAEDGTLIILAA  138 (287)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHHT-TC-----EEEECCEECCHHHHHHTCEEEEEE
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEeCC-CCCHHHHHHHHHHHHHh-CC-----EEEECCCcCCHHHHhcCCEEEEEe
Confidence            9 46899999   88888999999999997 56766656666666543 32     233344333221111123344556


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      ++++.+++++++|+..|.++++.++.....+.|+                 .+|.+......+++|+..++++.|+++++
T Consensus       139 g~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl-----------------~~N~~~~~~~~~~~E~~~l~~~~G~d~~~  201 (287)
T 3pef_A          139 GDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKL-----------------VVNMVMGGMMACFCEGLALGEKAGLATDA  201 (287)
T ss_dssp             ECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            6889999999999999988888877655555544                 44555566678899999999999999998


Q ss_pred             cccccCCcchhhhhccCCCccchHHHHhhCC-CChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720          364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLGSG-EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN  440 (458)
Q Consensus       364 ~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g-~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~  440 (458)
                      +.++.+.+.    +.+...++  .+..+.++ +...      .....+.||+++++++|+++|+++|+++.+++++..
T Consensus       202 ~~~~~~~~~----~~s~~~~~--~~~~~~~~~~~~~------~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  267 (287)
T 3pef_A          202 ILDVIGAGA----MANPMFAL--KGGLIRDRNFAPA------FPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKG  267 (287)
T ss_dssp             HHHHHHHST----TCCHHHHH--HHHHHHTTCCCCS------SBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcc----cccHHHHH--HhhhhhcCCCCCC------CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            877532110    11110111  22333322 1110      012345699999999999999999999999998853

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.93  E-value=7.4e-25  Score=216.22  Aligned_cols=257  Identities=19%  Similarity=0.234  Sum_probs=183.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+.|              +..+.+++++++++|+||+|
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~D~vi~~   68 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNPEAIADVIAAG--------------AETASTAKAIAEQCDVIITM   68 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTT--------------CEECSSHHHHHHHCSEEEEC
T ss_pred             cceEEEECchHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHCC--------------CeecCCHHHHHhCCCEEEEE
Confidence            479999999999999999999999  99999999999888887754              34556888888899999999


Q ss_pred             Cc-cccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MP-VQFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp-~~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      +| ...++.++   +++.+.++++++||++++|... +.+.+.+.+.+. |     ..++..|..............++.
T Consensus        69 v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~-~~~~l~~~~~~~-g-----~~~~~~pv~~~~~~~~~~~~~~~~  141 (299)
T 1vpd_A           69 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPL-ASREISDALKAK-G-----VEMLDAPVSGGEPKAIDGTLSVMV  141 (299)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHH-HHHHHHHHHHTT-T-----CEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHH-HHHHHHHHHHHc-C-----CeEEEecCCCCHhHHhcCCEEEEe
Confidence            99 56688888   6788889999999999976542 233444444332 2     234455544332211111223344


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPA  362 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~  362 (458)
                      +++++.+++++++|+..|+++++.++.....|.|++.                 |.+..++..++.|+..++++.|++++
T Consensus       142 ~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~-----------------n~~~~~~~~~~~Ea~~l~~~~G~~~~  204 (299)
T 1vpd_A          142 GGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLAN-----------------QVIVALNIAAMSEALTLATKAGVNPD  204 (299)
T ss_dssp             ESCHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence            5588899999999999999988887766656655444                 45567778999999999999999988


Q ss_pred             ccccccCCcch---hh--hhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          363 TITGLSGTGDI---ML--TCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       363 ~~~~~~g~gd~---~~--t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      ++.++...+..   ..  .+.++..++      +..|++.+.          ..||++.++++|+++|+++|+++.++++
T Consensus       205 ~~~~~~~~~~~~s~~~~~~~~~~l~~~------~~~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~~~~~  268 (299)
T 1vpd_A          205 LVYQAIRGGLAGSTVLDAKAPMVMDRN------FKPGFRIDL----------HIKDLANALDTSHGVGAQLPLTAAVMEM  268 (299)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHTTC------CCCSSBHHH----------HHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHccCCCCHHHHHhhhHhhcCC------CCCCCChHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            87765322210   00  011111111      112343332          2378999999999999999999999998


Q ss_pred             Hh
Q 012720          438 ID  439 (458)
Q Consensus       438 l~  439 (458)
                      ++
T Consensus       269 ~~  270 (299)
T 1vpd_A          269 MQ  270 (299)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.93  E-value=7.7e-25  Score=215.79  Aligned_cols=262  Identities=13%  Similarity=0.129  Sum_probs=184.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|+||.++|..|+++|  ++|++|+|++++++.+.+.|              +..+++++++++++|+||+||
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHG--YPLIIYDVFPDACKEFQDAG--------------EQVVSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTT--CCEEEECSSTHHHHHHHTTT--------------CEECSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEeccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC--------------CeecCCHHHHHhcCCEEEEeC
Confidence            68999999999999999999999  99999999999888887653              345668888888999999999


Q ss_pred             c-cccHHHHHHhh---hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          208 P-VQFSSSFLEGI---SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       208 p-~~~v~~vl~~i---~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      | +..+++++.++   .+.++++++||+ .+|+.+++.+.+.+.+.+. +.     .+...|....+...+.....++.+
T Consensus        65 p~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~-g~-----~~~~~p~~~g~~~a~~~~~~~~~~  137 (296)
T 2gf2_A           65 PTSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM-GA-----VFMDAPVSGGVGAARSGNLTFMVG  137 (296)
T ss_dssp             SSHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT-TC-----EEEECCEESHHHHHHHTCEEEEEE
T ss_pred             CCHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc-CC-----EEEEcCCCCChhHHhcCcEEEEeC
Confidence            6 56788888764   456788999999 6688887655555555442 32     233445443322122222334445


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      .+++.+++++++|+..|+.++...+.                 |.+..+|+.+|.+..++..++.|+..++++.|+++++
T Consensus       138 ~~~~~~~~v~~l~~~~g~~~~~~~~~-----------------g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~  200 (296)
T 2gf2_A          138 GVEDEFAAAQELLGCMGSNVVYCGAV-----------------GTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKL  200 (296)
T ss_dssp             SCGGGHHHHHHHHTTTEEEEEEEEST-----------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            67888999999999999887765542                 2223345566766778889999999999999999887


Q ss_pred             cccccCCcc---hhhhhccCCC---ccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          364 ITGLSGTGD---IMLTCFVNLS---RNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       364 ~~~~~g~gd---~~~t~~~~~s---rn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      +.++...++   .+.++.....   +....+.++..|++.+.          ..||+++++++|+++|+++|+++.++++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~~~~~  270 (296)
T 2gf2_A          201 LAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTL----------MAKDLGLAQDSATSTKSPILLGSLAHQI  270 (296)
T ss_dssp             HHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHH----------HHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            776532221   1222211100   01111233334554432          3589999999999999999999999999


Q ss_pred             Hh
Q 012720          438 ID  439 (458)
Q Consensus       438 l~  439 (458)
                      ++
T Consensus       271 ~~  272 (296)
T 2gf2_A          271 YR  272 (296)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.93  E-value=4.3e-25  Score=220.27  Aligned_cols=254  Identities=13%  Similarity=0.072  Sum_probs=177.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC--HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~--~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      +|||+|||+|.||.+||..|+++|  + +|++|+|+  ++..+.+.+.|              +..+++++++++++|+|
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G--~~~V~~~dr~~~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDvV   87 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAG--AIDMAAYDAASAESWRPRAEELG--------------VSCKASVAEVAGECDVI   87 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHS--CCEEEEECSSCHHHHHHHHHHTT--------------CEECSCHHHHHHHCSEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC--CCeEEEEcCCCCHHHHHHHHHCC--------------CEEeCCHHHHHhcCCEE
Confidence            689999999999999999999999  8 99999997  57777776654              35667888888999999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHh-CCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQAL-RNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~l-g~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |+|||.....+++.++.+.++++++||+++ ++.+.+.+.+.+.+.+.. |..+.+. .+.||..+.   .+.. .++++
T Consensus        88 i~~vp~~~~~~~~~~l~~~l~~~~ivvd~s-t~~~~~~~~~~~~~~~~~~g~~~vd~-pv~g~~~~~---~g~l-~i~vg  161 (312)
T 3qsg_A           88 FSLVTAQAALEVAQQAGPHLCEGALYADFT-SCSPAVKRAIGDVISRHRPSAQYAAV-AVMSAVKPH---GHRV-PLVVD  161 (312)
T ss_dssp             EECSCTTTHHHHHHHHGGGCCTTCEEEECC-CCCHHHHHHHHHHHHHHCTTCEEEEE-EECSCSTTT---GGGS-EEEEE
T ss_pred             EEecCchhHHHHHHhhHhhcCCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCeEEec-cccCCchhh---cCCE-EEEec
Confidence            999999888888999999999999999998 577766666666665542 3222222 334443322   3333 33444


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEEcCC-hHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720          283 SKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~~~d-i~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~  361 (458)
                      +. .+  ++++++|+..|.++.+.++ +...++.                 |+.+|.+......+++|+..+++++|+++
T Consensus       162 g~-~~--~~~~~ll~~~g~~~~~~g~~~g~a~~~-----------------Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~  221 (312)
T 3qsg_A          162 GD-GA--RRFQAAFTLYGCRIEVLDGEVGGAALL-----------------KMCRSAVLKGLEALFLEALAAAEKMGLAD  221 (312)
T ss_dssp             ST-TH--HHHHHHHHTTTCEEEECCSSTTHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             CC-hH--HHHHHHHHHhCCCeEEcCCCCCHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            44 34  8999999999999888776 5444444                 44555666667788999999999999998


Q ss_pred             cccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh
Q 012720          362 ATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID  439 (458)
Q Consensus       362 ~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~  439 (458)
                      + +++..      .....  ++.+ ..+..+..+    +...  +..  ..||+++++++++++|+++|+.+.+++++.
T Consensus       222 ~-~~~~l------~~~~~--~~~~~~~~~~~~~~----~~~~--g~~--~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~  283 (312)
T 3qsg_A          222 R-VLASL------DASFP--EHHLRDLALYLVER----NLEH--ADR--RAHELGEVAATLCSVGVEPLVAEAGYRRLT  283 (312)
T ss_dssp             H-HHHHH------HHHSG--GGTHHHHHHHHHHH----HHHH--HHH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             H-HHHHH------HhcCC--chhHHHhhhHhhcC----CCCc--ccc--hHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            4 44321      00000  1111 011111110    0000  000  148999999999999999999999998874

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.93  E-value=3.2e-25  Score=221.75  Aligned_cols=264  Identities=13%  Similarity=0.103  Sum_probs=178.8

Q ss_pred             hhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHHhhcCCCcc
Q 012720          105 WEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSINEKHCNCRY  177 (458)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-------~~~e~l~~~g~~~~~  177 (458)
                      |+.+.-|.+..+..    .|  +|||+|||+|.||.++|..|+++|. ++|++|+|++       +..+.+.+.|     
T Consensus         8 ~~~~~~~~~~~~~~----~M--~m~IgvIG~G~mG~~lA~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~~~~~~g-----   75 (317)
T 4ezb_A            8 SSGVDLGTENLYFQ----SM--MTTIAFIGFGEAAQSIAGGLGGRNA-ARLAAYDLRFNDPAASGALRARAAELG-----   75 (317)
T ss_dssp             -------CCCHHHH----TS--CCEEEEECCSHHHHHHHHHHHTTTC-SEEEEECGGGGCTTTHHHHHHHHHHTT-----
T ss_pred             ccccccCcccCccc----cc--CCeEEEECccHHHHHHHHHHHHcCC-CeEEEEeCCCccccchHHHHHHHHHCC-----
Confidence            44444444444432    34  5899999999999999999999862 7999999997       4555555433     


Q ss_pred             CCCCCCCCceEEeC-CHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC
Q 012720          178 FPEQKLPENVIATT-DAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR  256 (458)
Q Consensus       178 ~~~~~l~~~i~a~~-~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~  256 (458)
                               +  ++ +++++++++|+||+|||.....+.+.++.+.++++++||+++ ++.+.+.+.+.+.+.+. |..+
T Consensus        76 ---------~--~~~s~~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~-g~~~  142 (317)
T 4ezb_A           76 ---------V--EPLDDVAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATG-KGSF  142 (317)
T ss_dssp             ---------C--EEESSGGGGGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTS-SCEE
T ss_pred             ---------C--CCCCHHHHHhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHc-CCeE
Confidence                     2  34 677888999999999999887788899999999999999998 67777666666666543 3221


Q ss_pred             CCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCC-hHHHHHHHHHHHHHHHHHHHHhcccCC
Q 012720          257 QPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLG  335 (458)
Q Consensus       257 ~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~d-i~~~~~~kalkNi~ai~~G~~~~~kl~  335 (458)
                      .. ..+.||..+.   .+... +++++.+ +  ++++++|+..|.++++.++ +...+                 .+|+.
T Consensus       143 ~d-~pv~g~~~a~---~g~l~-i~vgg~~-~--~~~~~ll~~~g~~v~~~g~~~g~a~-----------------~~Kl~  197 (317)
T 4ezb_A          143 VE-GAVMARVPPY---AEKVP-ILVAGRR-A--VEVAERLNALGMNLEAVGETPGQAS-----------------SLKMI  197 (317)
T ss_dssp             EE-EEECSCSTTT---GGGSE-EEEESTT-H--HHHHHHHHTTTCEEEEEESSTTHHH-----------------HHHHH
T ss_pred             Ee-ccCCCCchhh---cCCEE-EEEeCCh-H--HHHHHHHHHhCCCeEEeCCCcCHHH-----------------HHHHH
Confidence            22 2456665432   34443 4455544 4  8999999999999887776 54444                 44555


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCccccccccC-C-c-chhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhh
Q 012720          336 NNSMAALVAQGCSEIRWLATKMGAKPATITGLSG-T-G-DIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVS  412 (458)
Q Consensus       336 ~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g-~-g-d~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~k  412 (458)
                      +|.+......+++|+..+|+++|++++.+..+.+ . + +....+....++++..|+.                   ..|
T Consensus       198 ~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~-------------------~~K  258 (317)
T 4ezb_A          198 RSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDWRDVADYYLSRTFEHGAR-------------------RVT  258 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHH-------------------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCccccHHHhhhhhhcCCCCCCcc-------------------hHH
Confidence            6666777889999999999999999864433211 0 0 1000010001111111111                   148


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          413 TAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       413 d~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      |+++++++|+++|+++|+++.++++
T Consensus       259 Dl~~~~~~a~~~g~~~pl~~~~~~~  283 (317)
T 4ezb_A          259 EMTEAAETIESFGLNAPMSRAACET  283 (317)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHH
Confidence            9999999999999999999999998

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.93  E-value=1.3e-24  Score=214.73  Aligned_cols=260  Identities=15%  Similarity=0.203  Sum_probs=184.3

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |.++|||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+.|              +..+++++++++++|+|
T Consensus         1 M~~~~~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~D~v   64 (301)
T 3cky_A            1 MEKSIKIGFIGLGAMGKPMAINLLKEG--VTVYAFDLMEANVAAVVAQG--------------AQACENNQKVAAASDII   64 (301)
T ss_dssp             ---CCEEEEECCCTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHTTT--------------CEECSSHHHHHHHCSEE
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHCC--------------CeecCCHHHHHhCCCEE
Confidence            455789999999999999999999999  99999999999888887643              34556888888899999


Q ss_pred             EEcCcc-ccHHHHHH---hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEE
Q 012720          204 LHAMPV-QFSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAM  279 (458)
Q Consensus       204 ilaVp~-~~v~~vl~---~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v  279 (458)
                      |+|+|. .++++++.   ++.+.++++++||++++|.. .+.+.+.+.+.+. +     +.++..|....+...+.....
T Consensus        65 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~-~~~~~l~~~~~~~-g-----~~~~~~p~~~~~~~a~~g~~~  137 (301)
T 3cky_A           65 FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSP-SSTLKMAKVAAEK-G-----IDYVDAPVSGGTKGAEAGTLT  137 (301)
T ss_dssp             EECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCH-HHHHHHHHHHHHT-T-----CEEEECCEESHHHHHHHTCEE
T ss_pred             EEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCH-HHHHHHHHHHHHc-C-----CeEEEccCCCCHHHHHcCCeE
Confidence            999974 66888885   78888899999999998763 2234445555442 2     233445554433211112222


Q ss_pred             EEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 012720          280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA  359 (458)
Q Consensus       280 ~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi  359 (458)
                      ++.+++++.++.++++|+..|+++++.++.....|.|++.                 |.+..++..++.|+..++++.|+
T Consensus       138 ~~~~g~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~-----------------N~~~~~~~~~~~Ea~~l~~~~G~  200 (301)
T 3cky_A          138 IMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVN-----------------NLLLGCNMASLAEALVLGVKCGL  200 (301)
T ss_dssp             EEEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCC
Confidence            3344588899999999999998887776655555555444                 45566778899999999999999


Q ss_pred             CccccccccC---Ccchh--hhhc-cCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHH
Q 012720          360 KPATITGLSG---TGDIM--LTCF-VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTA  433 (458)
Q Consensus       360 ~~~~~~~~~g---~gd~~--~t~~-~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~  433 (458)
                      +++++.++..   .++..  .++. ++..+++.      .|++++.          ..||++.++++++++|+++|+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~  264 (301)
T 3cky_A          201 KPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFA------GGFAMDL----------QHKDLGLALEAGKEGNVPLPMTAM  264 (301)
T ss_dssp             CHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCS------SSSBHHH----------HHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             CHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCC------CCccHHH----------HHHHHHHHHHHHHHhCCCChHHHH
Confidence            9887765421   11211  1222 33333332      2344432          248899999999999999999999


Q ss_pred             HHHHHh
Q 012720          434 VARIID  439 (458)
Q Consensus       434 v~~ll~  439 (458)
                      ++++++
T Consensus       265 ~~~~~~  270 (301)
T 3cky_A          265 ATQIFE  270 (301)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999886

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.92  E-value=2.2e-24  Score=224.67  Aligned_cols=285  Identities=18%  Similarity=0.153  Sum_probs=210.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C-----CCceEEeCCHHhhcCCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L-----PENVIATTDAKTALLGA  200 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~--l-----~~~i~a~~~~~ea~~~a  200 (458)
                      |||+|||+|+||+.+|..|+++|  ++|++|||++++++.+++.+ ...+.++..  +     ...+.++++++++++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G--~~V~~~d~~~~~~~~l~~~~-~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~a   77 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDS   77 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHhhcccCceEEeCCHHHHhccC
Confidence            68999999999999999999999  99999999999999998754 333333321  0     22478888998888999


Q ss_pred             CEEEEcCcccc----------HHHHHHhhhhcCCC---CCeEEEeccCCCcch-hhhHHHHHHHHhCCCC-CCEEEEECc
Q 012720          201 DYCLHAMPVQF----------SSSFLEGISDYVDP---GLPFISLSKGLELNT-LRMMSQIIPQALRNPR-QPFIALSGP  265 (458)
Q Consensus       201 DiVilaVp~~~----------v~~vl~~i~~~l~~---~~ivV~~snGi~~~t-~~~l~e~l~~~lg~~~-~~~~vl~gP  265 (458)
                      |+||+|||...          ++++++++.+.+++   +++||..+ ++.+.+ .+.+.+.+.+..+... ..+.+..+|
T Consensus        78 DvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~P  156 (436)
T 1mv8_A           78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP  156 (436)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred             CEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCcEEEEECc
Confidence            99999999765          89999999998888   89998877 677766 5667777766544321 345677888


Q ss_pred             ccHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012720          266 SFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (458)
Q Consensus       266 ~~a~ei~----~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~a  341 (458)
                      .+..+..    ...+..+++++.+++..+.++++|+..+.++.. .|+...+|.|++.|.                 ..+
T Consensus       157 e~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~-----------------~~a  218 (436)
T 1mv8_A          157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNV-----------------WHA  218 (436)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHH-----------------HHH
T ss_pred             ccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHH-----------------HHH
Confidence            7765321    123334556665688889999999999887766 788888888766653                 456


Q ss_pred             HHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHH
Q 012720          342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALA  421 (458)
Q Consensus       342 l~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA  421 (458)
                      +....++|+..+|++.|++++++.+..+....+.    ..++++..|..+ .|.++             .||.++++++|
T Consensus       219 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~r~~----~~~~~~~pg~g~-gg~~~-------------~kD~~~l~~~a  280 (436)
T 1mv8_A          219 AKVTFANEIGNIAKAVGVDGREVMDVICQDHKLN----LSRYYMRPGFAF-GGSCL-------------PKDVRALTYRA  280 (436)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTT----TSSTTCSCCSCC-CSSSH-------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC----CcccCCCCcccc-cCcCc-------------HhhHHHHHHHH
Confidence            6678999999999999999887766433211110    002222222211 12233             27889999999


Q ss_pred             HHcCCCCcHHHHHHHHHhcCCCHHHHHHHHhcC
Q 012720          422 QKYNVKMPVLTAVARIIDNELTPKKAVLELMSL  454 (458)
Q Consensus       422 ~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~  454 (458)
                      +++|+++|++++++++  +...+..++++++.+
T Consensus       281 ~~~g~~~pl~~~v~~i--n~~~~~~~~~~~~~~  311 (436)
T 1mv8_A          281 SQLDVEHPMLGSLMRS--NSNQVQKAFDLITSH  311 (436)
T ss_dssp             HHTTCCCTTGGGHHHH--HHHHHHHHHHHHTTS
T ss_pred             HHcCCCcHHHHHHHHH--HhHhHHHHHHHHHHh
Confidence            9999999999999998  666788888888764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.92  E-value=3.3e-24  Score=213.56  Aligned_cols=256  Identities=16%  Similarity=0.169  Sum_probs=180.8

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+|||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+.|              +....+++++++++|+||+
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~DvVi~   92 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMG--HTVTVWNRTAEKCDLFIQEG--------------ARLGRTPAEVVSTCDITFA   92 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSGGGGHHHHHTT--------------CEECSCHHHHHHHCSEEEE
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHcC--------------CEEcCCHHHHHhcCCEEEE
Confidence            3589999999999999999999999  99999999998888877644              2345678788889999999


Q ss_pred             cCc-cccHHHHHHhh---hhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH--HhccCCeEE
Q 012720          206 AMP-VQFSSSFLEGI---SDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE--LMNKLPTAM  279 (458)
Q Consensus       206 aVp-~~~v~~vl~~i---~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e--i~~g~~t~v  279 (458)
                      ||| ...+++++.++   .+.+.++++||+++++ .+.+.+.+.+.+.+. +     ..++.+|.....  ...+.  ..
T Consensus        93 av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~-~-----~~~v~~p~~g~~~~~~~g~--~~  163 (316)
T 2uyy_A           93 CVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV-DADTVTELAQVIVSR-G-----GRFLEAPVSGNQQLSNDGM--LV  163 (316)
T ss_dssp             CCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCC-CHHHHHHHHHHHHHT-T-----CEEEECCEESCHHHHHHTC--EE
T ss_pred             eCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHc-C-----CEEEEcCccCChhHHhhCC--EE
Confidence            999 67888888764   3778889999999964 433333444444331 2     245555554322  22333  22


Q ss_pred             EEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 012720          280 VVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA  359 (458)
Q Consensus       280 ~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi  359 (458)
                      ++.+++++.+++++++|+..|+.+++.+++....|.|.+.|.+.                 ..+..++.|+..++++.|+
T Consensus       164 ~~~~g~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~-----------------~~~~~~~~Ea~~la~~~G~  226 (316)
T 2uyy_A          164 ILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQ-----------------GSFMATIAEGLTLAQVTGQ  226 (316)
T ss_dssp             EEEEECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHcCC
Confidence            33334788899999999999999888888766667766655432                 2256789999999999999


Q ss_pred             CccccccccCCcc---hhh--hhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHH
Q 012720          360 KPATITGLSGTGD---IML--TCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAV  434 (458)
Q Consensus       360 ~~~~~~~~~g~gd---~~~--t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v  434 (458)
                      +++++.++...++   ...  .+.+..      ..++..|++++.          ..||+++++++++++|+++|+++++
T Consensus       227 ~~~~~~~~~~~~~~~s~~~~~~~~~~l------~~~~~~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~v  290 (316)
T 2uyy_A          227 SQQTLLDILNQGQLASIFLDQKCQNIL------QGNFKPDFYLKY----------IQKDLRLAIALGDAVNHPTPMAAAA  290 (316)
T ss_dssp             CHHHHHHHHHHSTTCCHHHHHHHHHHH------HTCCCCSSBHHH----------HHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCHHHHHhhHHhh------cCCCCCCCcHHH----------HHHHHHHHHHHHHHhCCCChHHHHH
Confidence            9887765421111   000  000000      011222344432          2589999999999999999999999


Q ss_pred             HHHHh
Q 012720          435 ARIID  439 (458)
Q Consensus       435 ~~ll~  439 (458)
                      +++++
T Consensus       291 ~~~~~  295 (316)
T 2uyy_A          291 NEVYK  295 (316)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99886

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.92  E-value=1.8e-24  Score=226.68  Aligned_cols=286  Identities=14%  Similarity=0.093  Sum_probs=207.4

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhc-CCCC-eEEEEeCCHH----HHHHHHhhcCCCc--cCCCCC-------CCCceE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANK-KSQL-KVYMLMRDPA----VCQSINEKHCNCR--YFPEQK-------LPENVI  188 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~a-G~~~-~V~v~~r~~~----~~e~l~~~g~~~~--~~~~~~-------l~~~i~  188 (458)
                      |+.+|||+|||+|.||+++|..|+++ |  + +|++||++++    +++.+++. ....  +.++..       .+.++.
T Consensus        15 ~~~~mkIaVIGlG~mG~~lA~~la~~~G--~~~V~~~D~~~~~~~~kv~~l~~g-~~~i~~~e~gl~~l~~~~~~~g~l~   91 (478)
T 3g79_A           15 RGPIKKIGVLGMGYVGIPAAVLFADAPC--FEKVLGFQRNSKSSGYKIEMLNRG-ESPLKGEEPGLEELIGKVVKAGKFE   91 (478)
T ss_dssp             HCSCCEEEEECCSTTHHHHHHHHHHSTT--CCEEEEECCCCTTTTTHHHHHTTT-CCCSSCCGGGHHHHHHHHHHTTCEE
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHHhCC--CCeEEEEECChhHhHHHHHHHHhc-CCCccccCCCHHHHHHhhcccCCeE
Confidence            45678999999999999999999999 9  9 9999999999    99999874 3333  444322       145688


Q ss_pred             EeCCHHhhcCCCCEEEEcCcccc------------HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHH-HHhCCC
Q 012720          189 ATTDAKTALLGADYCLHAMPVQF------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP-QALRNP  255 (458)
Q Consensus       189 a~~~~~ea~~~aDiVilaVp~~~------------v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~-~~lg~~  255 (458)
                      ++++ .+++++||+||+|||+..            +..++++|.++++++++||..+ |+.+++.+.+.+.+. +..|..
T Consensus        92 ~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~pgtt~~v~~~ile~~~g~~  169 (478)
T 3g79_A           92 CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES-TITPGTTEGMAKQILEEESGLK  169 (478)
T ss_dssp             EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS-CCCTTTTTTHHHHHHHHHHCCC
T ss_pred             EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC-CCChHHHHHHHHHHHHHhcCCC
Confidence            8888 567899999999999752            6777788999999999999887 899998888876443 444531


Q ss_pred             -CCCEEEEECcccHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcC-CCeEEEcCChHHHHHHHHHHHHHHHHHHHH
Q 012720          256 -RQPFIALSGPSFALELM----NKLPTAMVVASKDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNVLAIAAGIV  329 (458)
Q Consensus       256 -~~~~~vl~gP~~a~ei~----~g~~t~v~i~g~d~e~~e~l~~lL~~~-g~~v~~~~di~~~~~~kalkNi~ai~~G~~  329 (458)
                       ...+.++++|.++.+..    ...+.. +++|.+++.+++++++|+.. +..+++..++...+..|+            
T Consensus       170 ~~~d~~v~~~Pe~~~~G~a~~~~~~~~~-Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl------------  236 (478)
T 3g79_A          170 AGEDFALAHAPERVMVGRLLKNIREHDR-IVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKT------------  236 (478)
T ss_dssp             BTTTBEEEECCCCCCTTSHHHHHHHSCE-EEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHH------------
T ss_pred             cCCceeEEeCCccCCccchhhhhcCCcE-EEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHH------------
Confidence             13578999998765421    112334 45777888899999999988 667777778766666554            


Q ss_pred             hcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccch
Q 012720          330 VGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAE  409 (458)
Q Consensus       330 ~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~e  409 (458)
                           .+|.+.++....++|+..+|+++|+|++.+.+..+... ..   ....+.+.+|.-+  |-.+            
T Consensus       237 -----~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~-~~---ri~~~~~~PG~G~--GG~c------------  293 (478)
T 3g79_A          237 -----AENTFRDLQIAAINQLALYCEAMGINVYDVRTGVDSLK-GE---GITRAVLWPGAGV--GGHC------------  293 (478)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC-CS---SSCCCCCCCCSCC--CSSH------------
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc-hh---hhccccCCCCCCc--chhh------------
Confidence                 44566777788999999999999999988876432211 00   0011122222211  2122            


Q ss_pred             hhhHHHHHHHHHHHcCCC-------CcHHHHHHHHHhcCCCHHHHHHHHh
Q 012720          410 GVSTAGAVIALAQKYNVK-------MPVLTAVARIIDNELTPKKAVLELM  452 (458)
Q Consensus       410 g~kd~g~v~~lA~~~gv~-------~P~~~~v~~ll~~~~~~~~~~~~l~  452 (458)
                      ..||.++++..|+++|++       +|+++++.++  +...+.-+++++.
T Consensus       294 ~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~~i--N~~~~~~~~~~i~  341 (478)
T 3g79_A          294 LTKDTYHLERGVKIGRGELDYPEGADSIYVLARKV--NDFMPAHMYNLTV  341 (478)
T ss_dssp             HHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCcccccchhHHHHHHHHH--HHHHHHHHHHHHH
Confidence            138999999999999987       8999999887  4555555555543

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.92  E-value=1.2e-24  Score=228.98  Aligned_cols=279  Identities=11%  Similarity=0.083  Sum_probs=192.0

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---C
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---A  200 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---a  200 (458)
                      .|.+|||+|||+|+||++||.+|+++|  ++|++|+|++++++.+.+...      +    .++..++++++++++   +
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G--~~V~v~~r~~~~~~~l~~~~~------~----~gi~~~~s~~e~v~~l~~a   79 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRG--YTVSIFNRSREKTEEVIAENP------G----KKLVPYYTVKEFVESLETP   79 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSHHHHHHHHHHST------T----SCEEECSSHHHHHHTBCSS
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHhhCC------C----CCeEEeCCHHHHHhCCCCC
Confidence            344579999999999999999999999  999999999999998877521      0    246677889888776   9


Q ss_pred             CEEEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH--hccCCe
Q 012720          201 DYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL--MNKLPT  277 (458)
Q Consensus       201 DiVilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei--~~g~~t  277 (458)
                      |+||+|||+ .+++++++++.+.++++++||+++||....+ ..+.+.+.+. |.     .++..|....+.  ..|.  
T Consensus        80 DvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t-~~l~~~l~~~-g~-----~~v~~pv~gg~~~a~~g~--  150 (480)
T 2zyd_A           80 RRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDT-IRRNRELSAE-GF-----NFIGTGVSGGEEGALKGP--  150 (480)
T ss_dssp             CEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-TC-----EEEEEEEESHHHHHHHCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHH-HHHHHHHHHC-CC-----CeeCCccccCHhHHhcCC--
Confidence            999999998 5799999999999999999999999876543 3345555442 32     233444433222  2333  


Q ss_pred             EEEEccCCHHHHHHHHHHHhcCCCe-------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHH
Q 012720          278 AMVVASKDRKLANAVQQLLASKHLR-------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEI  350 (458)
Q Consensus       278 ~v~i~g~d~e~~e~l~~lL~~~g~~-------v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~  350 (458)
                      .+ +.+++++.+++++++|+..+.+       +.+.++.                 |.+..+|+++|.+..++.++++|+
T Consensus       151 ~i-~~gg~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~laEa  212 (480)
T 2zyd_A          151 SI-MPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGAD-----------------GAGHYVKMVHNGIEYGDMQLIAEA  212 (480)
T ss_dssp             EE-EEESCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBST-----------------THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eE-EecCCHHHHHHHHHHHHHHhccccCCCceEEEECCc-----------------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 4445789999999999987766       3444332                 444556677788888899999999


Q ss_pred             HHHHHH-cCCCcccccccc-----C-CcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHH-HHHHHHH
Q 012720          351 RWLATK-MGAKPATITGLS-----G-TGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAG-AVIALAQ  422 (458)
Q Consensus       351 ~~la~a-~Gi~~~~~~~~~-----g-~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g-~v~~lA~  422 (458)
                      ..++++ +|++++++.++.     + +++.+.++++...+++.    ...++.++.+.+..+     .|+.+ .++++|+
T Consensus       213 ~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d----~~~~~~v~~i~D~~~-----~k~tG~~~~~~A~  283 (480)
T 2zyd_A          213 YSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKD----EDGNYLVDVILDEAA-----NKGTGKWTSQSAL  283 (480)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCBC----TTSSBGGGGBCCCCC-----CCSCTTHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcCC----CCCcchHHHHHHHhc-----CchHHHHHHHHHH
Confidence            999999 799998887653     3 55666666543222211    111222332221111     13333 7889999


Q ss_pred             HcCCCCcHHHHH--HHHHhcCCCHHHHHHH
Q 012720          423 KYNVKMPVLTAV--ARIIDNELTPKKAVLE  450 (458)
Q Consensus       423 ~~gv~~P~~~~v--~~ll~~~~~~~~~~~~  450 (458)
                      ++|+++|+++.+  ++++....+.+....+
T Consensus       284 ~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~  313 (480)
T 2zyd_A          284 DLGEPLSLITESVFARYISSLKDQRVAASK  313 (480)
T ss_dssp             HHTCCCHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HcCCCCchHHHHHHHHhhhcchhhhHHhhc
Confidence            999999999874  5555554444444433

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.91  E-value=9.1e-25  Score=225.09  Aligned_cols=302  Identities=13%  Similarity=0.137  Sum_probs=186.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEe---CCHHHHHHH-HhhcC--CCccCCC--CCCCCceE-EeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLM---RDPAVCQSI-NEKHC--NCRYFPE--QKLPENVI-ATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~---r~~~~~e~l-~~~g~--~~~~~~~--~~l~~~i~-a~~~~~ea  196 (458)
                      +|||+|||+|+||+++|..|++ +|  ++|++|+   |++++++.+ ++.+.  +..+.++  ..++..+. ++++++++
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G--~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   79 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDG--VEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIA   79 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTT--EEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC--CEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHH
Confidence            4799999999999999999998 58  9999999   888888774 44332  1112222  11122233 67788888


Q ss_pred             cCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH-----h-CCCCCC-EEEEECcccHH
Q 012720          197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA-----L-RNPRQP-FIALSGPSFAL  269 (458)
Q Consensus       197 ~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~-----l-g~~~~~-~~vl~gP~~a~  269 (458)
                      ++++|+||+|||+.++.++++++.++++++++|++++++.+.+.  ...+.+.+.     + +....+ .+.+.||+++.
T Consensus        80 ~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G~~~--~~~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v  157 (404)
T 3c7a_A           80 ISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEF--QCRDILGDKAAAVSMMSFETLPWACRIKEFGRKV  157 (404)
T ss_dssp             HTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTTHHH--HHHHHHGGGGGTSEEEEESSCSEEEEEEETTTEE
T ss_pred             hCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCccHHH--HHHHHHHhcCCCeEEEEecCchHhhcccCCCcEE
Confidence            89999999999999999999999999999999999654443211  111233321     1 100122 35567887544


Q ss_pred             HHhccCCe--EEEEccCCHHHHHHHHHHHhcCCC-e-EEEcCChHHHHHHHHHHHHHHHHHHHHhcc------c------
Q 012720          270 ELMNKLPT--AMVVASKDRKLANAVQQLLASKHL-R-ISTSSDVTGVEIAGALKNVLAIAAGIVVGM------N------  333 (458)
Q Consensus       270 ei~~g~~t--~v~i~g~d~e~~e~l~~lL~~~g~-~-v~~~~di~~~~~~kalkNi~ai~~G~~~~~------k------  333 (458)
                      +...+...  .....+ +.+..+++.++|...+. + +..++|+.+.+|+.   |++.++.++...+      .      
T Consensus       158 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~di~~~~l~~---N~~~~~~~~l~~~~~~~g~~~~~~~~  233 (404)
T 3c7a_A          158 EVLGTKSVLAASLIKG-TAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMS---YSFVHPAILFGRWGSWDGKPVPEAPL  233 (404)
T ss_dssp             EEEEECSEEEEEEECC-SSCCSCHHHHHHHHHCSSSEEEECSCHHHHHHTT---CTTHHHHHHHHHHTTCCSCCBSSCCB
T ss_pred             EEEEECceEEEEEccC-CcchHHHHHHHHHHhCCCCceeEcCCEeeeeecC---CceeccHHHHHHHHhhhcCCCCCCCc
Confidence            33222211  111212 11222345555555554 3 67899999888774   6665555544222      1      


Q ss_pred             CCC---cHHHHHHHHHHHHHHHHHHHc-----CCCccccccccCCcchhhhhccCCCccc-hHHHHhhCC-------CC-
Q 012720          334 LGN---NSMAALVAQGCSEIRWLATKM-----GAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSG-------EK-  396 (458)
Q Consensus       334 l~~---n~~~al~~~~l~E~~~la~a~-----Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g-------~~-  396 (458)
                      +..   +....++.+++.|+.++++++     |+++.++   .+++|.+.+++.....++ ++...+...       +| 
T Consensus       234 ~~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~~~~---~~~~d~~~~~~~~~~~~~~s~~~~~~~~~~~~d~~~P~  310 (404)
T 3c7a_A          234 FYQGIDQATADMLTACSNECKDVANAIMAACPGNDLSDV---KDIYQWYLEYYHEDIQDDHDLYHAITTNKSYKGLVHPV  310 (404)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCTTC---CCHHHHHHHHSTTTBSCCSSHHHHHHTBGGGTTCBCCE
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccC---CCHHHHHHHhCCCccCChhhHHHHHHhhhhhccCCCCC
Confidence            333   357799999999999999999     9987554   234455555543211111 111111110       11 


Q ss_pred             --hHH-H--Hhhccccchhh-hHHHHHHHHHHHcCCCCcHHHHHHHHHh
Q 012720          397 --LDD-I--LSSMNQVAEGV-STAGAVIALAQKYNVKMPVLTAVARIID  439 (458)
Q Consensus       397 --~e~-~--~~~~~~~~eg~-kd~g~v~~lA~~~gv~~P~~~~v~~ll~  439 (458)
                        +|. +  ....+...|++ ..++.++++|+++||++|+++++|++++
T Consensus       311 ~~te~~~~~d~~~r~~~Edv~~~~~~v~~la~~~gV~tP~~~~l~~l~~  359 (404)
T 3c7a_A          311 KAVDGGVAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLIMWAQ  359 (404)
T ss_dssp             EEETTEEEECCCSSTTTTTTTTTHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             CCcCCCccCCccccccccccccchHHHHHHHHHhCCCCchHHHHHHHHH
Confidence              000 0  00123355534 4789999999999999999999999975

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.91  E-value=1.5e-23  Score=205.48  Aligned_cols=252  Identities=15%  Similarity=0.149  Sum_probs=177.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||||+|||+|.||..+|..|++ |  ++|++|+|++++++.+.+.|.              ..++ ++++++++|+||+|
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g--~~V~~~~~~~~~~~~~~~~g~--------------~~~~-~~~~~~~~D~vi~~   62 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-R--FPTLVWNRTFEKALRHQEEFG--------------SEAV-PLERVAEARVIFTC   62 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-T--SCEEEECSSTHHHHHHHHHHC--------------CEEC-CGGGGGGCSEEEEC
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHCCC--------------cccC-HHHHHhCCCEEEEe
Confidence            4789999999999999999999 9  999999999998888877653              1233 55677899999999


Q ss_pred             Ccccc-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH--HhccCCeEEEEcc
Q 012720          207 MPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE--LMNKLPTAMVVAS  283 (458)
Q Consensus       207 Vp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e--i~~g~~t~v~i~g  283 (458)
                      +|... ++++++++.+.++++++||+++++ .+.+.+.+.+.+.+. +     ..++..|.....  ...|..  .++.+
T Consensus        63 v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~-g-----~~~~~~p~~~~~~~~~~g~~--~~~~~  133 (289)
T 2cvz_A           63 LPTTREVYEVAEALYPYLREGTYWVDATSG-EPEASRRLAERLREK-G-----VTYLDAPVSGGTSGAEAGTL--TVMLG  133 (289)
T ss_dssp             CSSHHHHHHHHHHHTTTCCTTEEEEECSCC-CHHHHHHHHHHHHTT-T-----EEEEECCEESHHHHHHHTCE--EEEEE
T ss_pred             CCChHHHHHHHHHHHhhCCCCCEEEECCCC-CHHHHHHHHHHHHHc-C-----CEEEEecCCCChhHHhhCCe--EEEEC
Confidence            99764 888999998889999999999864 333233344444331 2     334455643322  223432  23345


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      ++++.+++++++| ..|+++++.++.....|.|...                 |....++..++.|+..++++.|+++++
T Consensus       134 ~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~-----------------n~~~~~~~~~~~Ea~~l~~~~G~~~~~  195 (289)
T 2cvz_A          134 GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAIN-----------------NALLAVNLWAAGEGLLALVKQGVSAEK  195 (289)
T ss_dssp             SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHcCcCHHH
Confidence            5888999999999 9999887777765555655443                 445667789999999999999999887


Q ss_pred             cccccCCcc---hhhh--hc-cCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          364 ITGLSGTGD---IMLT--CF-VNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       364 ~~~~~g~gd---~~~t--~~-~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      +.++...+.   .+..  .. +...+++      ..|++++.          ..||++.++++++++|+++|++++++++
T Consensus       196 ~~~~~~~~~~~s~~~~~~~~~~~l~~~~------~~g~~~~~----------~~kd~~~~~~~a~~~gv~~p~~~~v~~~  259 (289)
T 2cvz_A          196 ALEVINASSGRSNATENLIPQRVLTRAF------PKTFALGL----------LVKDLGIAMGVLDGEKAPSPLLRLAREV  259 (289)
T ss_dssp             HHHHHTTSTTCBHHHHHTHHHHTTTSCC------CCSSBHHH----------HHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             HHHHHHccCCCCHHHHHhccchhhcCCC------CCCcChHH----------HHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            766532221   1111  11 1111221      12333432          2488999999999999999999999998


Q ss_pred             Hh
Q 012720          438 ID  439 (458)
Q Consensus       438 l~  439 (458)
                      ++
T Consensus       260 ~~  261 (289)
T 2cvz_A          260 YE  261 (289)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.90  E-value=2.4e-23  Score=204.89  Aligned_cols=255  Identities=15%  Similarity=0.123  Sum_probs=179.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||||+|||+|.||..+|..|+++|  ++|++|+ ++++++.+.+.|.              ..+++++++++++|+||+|
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~-~~~~~~~~~~~g~--------------~~~~~~~~~~~~~D~vi~~   65 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAG--HQLHVTT-IGPVADELLSLGA--------------VNVETARQVTEFADIIFIM   65 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTT--CEEEECC-SSCCCHHHHTTTC--------------BCCSSHHHHHHTCSEEEEC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCC--CEEEEEc-CHHHHHHHHHcCC--------------cccCCHHHHHhcCCEEEEE
Confidence            589999999999999999999999  9999999 8877777776532              2345788888899999999


Q ss_pred             Cccc-cHHHHHH---hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH--hccCCeEEE
Q 012720          207 MPVQ-FSSSFLE---GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL--MNKLPTAMV  280 (458)
Q Consensus       207 Vp~~-~v~~vl~---~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei--~~g~~t~v~  280 (458)
                      +|.. .+++++.   ++.+.++++++||++++|. +.+.+.+.+.+.+. +     +.++..|......  ..+...  +
T Consensus        66 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~-g-----~~~~~~p~~~~~~~a~~g~~~--~  136 (295)
T 1yb4_A           66 VPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSIS-PIETKRFAQRVNEM-G-----ADYLDAPVSGGEIGAREGTLS--I  136 (295)
T ss_dssp             CSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCC-HHHHHHHHHHHHTT-T-----EEEEECCEESHHHHHHHTCEE--E
T ss_pred             CCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHc-C-----CeEEEccCCCCHHHHHcCCeE--E
Confidence            9865 4888887   7888888999999999763 22233444444331 2     3344555543321  133322  3


Q ss_pred             EccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      +.+++++.+++++++|+..|+++++.++.....|.|++.|                 ....++..++.|+..++++.|++
T Consensus       137 ~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n-----------------~~~~~~~~~~~E~~~l~~~~G~~  199 (295)
T 1yb4_A          137 MVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQ-----------------IIVALNIEAVSEALVFASKAGAD  199 (295)
T ss_dssp             EEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCCC
Confidence            3445888999999999999998888777666666665544                 34566778999999999999999


Q ss_pred             ccccccccCCcchhhhhccCCCccchHHHHh----hCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720          361 PATITGLSGTGDIMLTCFVNLSRNRTVGVRL----GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR  436 (458)
Q Consensus       361 ~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l----~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~  436 (458)
                      ++++.+....+..  .+.  ..++ ..+..+    ..|++++.          ..||+++++++++++|+++|+++++++
T Consensus       200 ~~~~~~~~~~~~~--~s~--~~~~-~~~~~~~~~~~~g~~~~~----------~~kd~~~~~~~a~~~g~~~p~~~~~~~  264 (295)
T 1yb4_A          200 PVRVRQALMGGFA--SSR--ILEV-HGERMINRTFEPGFKIAL----------HQKDLNLALQSAKALALNLPNTATCQE  264 (295)
T ss_dssp             HHHHHHHHTSSSS--CBH--HHHH-HHHHHHTTCCCCSSBHHH----------HHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCC--CCH--HHHH-hhHHHhcCCCCCCCchHH----------HHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            8877654322110  000  0000 011111    12444432          358999999999999999999999999


Q ss_pred             HHh
Q 012720          437 IID  439 (458)
Q Consensus       437 ll~  439 (458)
                      +++
T Consensus       265 ~~~  267 (295)
T 1yb4_A          265 LFN  267 (295)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            886

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.90  E-value=5.2e-23  Score=216.79  Aligned_cols=284  Identities=17%  Similarity=0.204  Sum_probs=201.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC------CCCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK------LPENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~------l~~~i~a~~~~~ea~~~a  200 (458)
                      +|||+|||+|.||..+|..|+++|.+++|++|||++++++.+++.+ ...+.++..      ...++.++++++++++++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~-~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDK-LPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS-CSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            5799999999999999999999832299999999999999998643 333333311      023578888988888999


Q ss_pred             CEEEEcCccc---------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC-CCCCEEEEEC
Q 012720          201 DYCLHAMPVQ---------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN-PRQPFIALSG  264 (458)
Q Consensus       201 DiVilaVp~~---------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~-~~~~~~vl~g  264 (458)
                      |+||+|||+.               ++.+++++|.++++++++||..+ ++.+++.+.+.+.+.+..+. ....+.+.++
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~  166 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVKAAESIGCILREAQKNNENLKFQVLSN  166 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHTC----CCEEEEEC
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCCHHHHHHHHHHHhhCcCcCCceEEEeC
Confidence            9999999863               38888999999999999999887 78888777777777662231 1134667889


Q ss_pred             cccHHHHh----ccCCeEEEEccCCH----HHHHHHHHHHhcCCC-eEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCC
Q 012720          265 PSFALELM----NKLPTAMVVASKDR----KLANAVQQLLASKHL-RISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLG  335 (458)
Q Consensus       265 P~~a~ei~----~g~~t~v~i~g~d~----e~~e~l~~lL~~~g~-~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~  335 (458)
                      |.+..+..    ...+..+++++.+.    +.+++++++|+..+. .++...|+...+|.|++.|.              
T Consensus       167 Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~--------------  232 (481)
T 2o3j_A          167 PEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANA--------------  232 (481)
T ss_dssp             CCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHH--------------
T ss_pred             cccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHH--------------
Confidence            98765321    12333455666542    577899999998874 66777889899998876664              


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHH
Q 012720          336 NNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAG  415 (458)
Q Consensus       336 ~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g  415 (458)
                         +.++...+++|+..+|+++|++++++.+..+....+      ..+.+..|.-+ .|.+.             .||.+
T Consensus       233 ---~~a~~ia~~nE~~~la~~~Gid~~~v~~~~~~~~ri------~~~~~~pg~g~-gg~c~-------------~KD~~  289 (481)
T 2o3j_A          233 ---FLAQRISSINSISAVCEATGAEISEVAHAVGYDTRI------GSKFLQASVGF-GGSCF-------------QKDVL  289 (481)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTT------CSSSCCCCSCC-CSSSH-------------HHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHccCCCC------CCCCCCCCCcc-CCccH-------------HHHHH
Confidence               456678899999999999999998887643221111      01111111111 11222             38999


Q ss_pred             HHHHHHHHcCCC--CcHHHHHHHHHhcCCCHHHHHHHH
Q 012720          416 AVIALAQKYNVK--MPVLTAVARIIDNELTPKKAVLEL  451 (458)
Q Consensus       416 ~v~~lA~~~gv~--~P~~~~v~~ll~~~~~~~~~~~~l  451 (458)
                      +++.+|+++|++  +|+.+++.++  +...+.-+++++
T Consensus       290 ~l~~~A~~~g~~~~~~l~~~~~~~--N~~~~~~~~~~~  325 (481)
T 2o3j_A          290 SLVYLCESLNLPQVADYWQGVINI--NNWQRRRFADKI  325 (481)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccchHHHHHHHH--HHhhHHHHHHHH
Confidence            999999999999  9999998766  334455444444

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.90  E-value=2.8e-22  Score=202.31  Aligned_cols=296  Identities=17%  Similarity=0.135  Sum_probs=177.7

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC--CCce-EEeCCHHhhcCCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL--PENV-IATTDAKTALLGA  200 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l--~~~i-~a~~~~~ea~~~a  200 (458)
                      ||++|||+|||+|+||+.+|..|+++|  ++|++|+|++++++.+++.+.  .++.+...  ...+ ..+++++++++++
T Consensus         1 mm~~mki~iiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (359)
T 1bg6_A            1 MIESKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGA--IIAEGPGLAGTAHPDLLTSDIGLAVKDA   76 (359)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTS--EEEESSSCCEEECCSEEESCHHHHHTTC
T ss_pred             CCCcCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHhcCC--eEEeccccccccccceecCCHHHHHhcC
Confidence            456789999999999999999999999  999999999999998887631  01111101  1112 3567888888899


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCC-C-------CCCEE-EEECcccHHHH
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRN-P-------RQPFI-ALSGPSFALEL  271 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~-~-------~~~~~-vl~gP~~a~ei  271 (458)
                      |+||+|||+....++++++.+.++++++||+++ |+..++.+ +.+.+.+. +. .       ..+.. ...||+++...
T Consensus        77 D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~-~~~~~~~~-~~~~l~~~-~~~~v~~~~~~~~~~~~~~~gpg~v~~~  153 (359)
T 1bg6_A           77 DVILIVVPAIHHASIAANIASYISEGQLIILNP-GATGGALE-FRKILREN-GAPEVTIGETSSMLFTCRSERPGQVTVN  153 (359)
T ss_dssp             SEEEECSCGGGHHHHHHHHGGGCCTTCEEEESS-CCSSHHHH-HHHHHHHT-TCCCCEEEEESSCSEEEECSSTTEEEEE
T ss_pred             CEEEEeCCchHHHHHHHHHHHhCCCCCEEEEcC-CCchHHHH-HHHHHHhc-CCCCeEEEEecCCcEEEEeCCCCEEEEE
Confidence            999999999999999999999999999999884 54433222 34444442 21 0       01222 22455443321


Q ss_pred             hc-cCCeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHH--H----HHHhcc----cC--C--
Q 012720          272 MN-KLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIA--A----GIVVGM----NL--G--  335 (458)
Q Consensus       272 ~~-g~~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~--~----G~~~~~----kl--~--  335 (458)
                      .. +........ +.+++.++.++++|..    +...+|+    |.|+++|+.++.  .    +.....    .+  +  
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~~di----~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~  225 (359)
T 1bg6_A          154 AIKGAMDFACLPAAKAGWALEQIGSVLPQ----YVAVENV----LHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEG  225 (359)
T ss_dssp             EECSCEEEEEESGGGHHHHHHHHTTTCTT----EEECSCH----HHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHH
T ss_pred             EeecceEEEeccccccHHHHHHHHHHhhh----cEEcCCh----HhhhccCCCccccHHHHHhhhchhhcCCccchhhcC
Confidence            11 111111111 3445567888888854    2345664    889998754331  1    221111    11  1  


Q ss_pred             -CcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccC---CCccchHHHHhhCCCChHHHHhhccccchhh
Q 012720          336 -NNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVN---LSRNRTVGVRLGSGEKLDDILSSMNQVAEGV  411 (458)
Q Consensus       336 -~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~---~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~  411 (458)
                       .+....++.+++.|+.++++++|++++++.+.....  .......   ..+..++-+++.  ++.| +.... ...|..
T Consensus       226 ~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~--~~~~~~~l~~~~~~~sm~~d~~--~~~e-~~~~~-~~~D~~  299 (359)
T 1bg6_A          226 ITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKES--YGQSPATIYEAVQGNPAYRGIA--GPIN-LNTRY-FFEDVS  299 (359)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC---------CCSHHHHHHTCGGGTTCB--CCSS-SCCHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH--hCCCcccHHHHHhcchhhcCCC--CCCC-CCccc-eecCcC
Confidence             345678999999999999999999987665431110  0000000   000112223332  2222 10000 000111


Q ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720          412 STAGAVIALAQKYNVKMPVLTAVARIIDN  440 (458)
Q Consensus       412 kd~g~v~~lA~~~gv~~P~~~~v~~ll~~  440 (458)
                      +.+++++++|+++|+++|+++.+|++++.
T Consensus       300 ~~~g~~~~~a~~~gv~~P~~~~l~~~~~~  328 (359)
T 1bg6_A          300 TGLVPLSELGRAVNVPTPLIDAVLDLISS  328 (359)
T ss_dssp             TTHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            23489999999999999999999999975

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.90  E-value=7.6e-23  Score=203.42  Aligned_cols=258  Identities=15%  Similarity=0.114  Sum_probs=173.7

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+|||+|||+|.||..||.+|+++|  ++|++|||++++++.+.+.|              +..+++++++++++|+||+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~~~~~g--------------~~~~~~~~e~~~~aDvVi~   71 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQG--KRVAIWNRSPGKAAALVAAG--------------AHLCESVKAALSASPATIF   71 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHT--------------CEECSSHHHHHHHSSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCC--------------CeecCCHHHHHhcCCEEEE
Confidence            3689999999999999999999999  99999999999999888765              3456788898899999999


Q ss_pred             cCccc-cHHHHHH--hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHH--HHhccCCeEEE
Q 012720          206 AMPVQ-FSSSFLE--GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL--ELMNKLPTAMV  280 (458)
Q Consensus       206 aVp~~-~v~~vl~--~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~--ei~~g~~t~v~  280 (458)
                      |||.. .+++++.  .+.. +.++++||+++ ++.+.+.+.+.+.+.+. |.     .++.+|....  ....+..  .+
T Consensus        72 ~vp~~~~~~~v~~~~~l~~-~~~g~ivid~s-t~~~~~~~~l~~~~~~~-g~-----~~vdapv~g~~~~~~~~~~--~i  141 (306)
T 3l6d_A           72 VLLDNHATHEVLGMPGVAR-ALAHRTIVDYT-TNAQDEGLALQGLVNQA-GG-----HYVKGMIVAYPRNVGHRES--HS  141 (306)
T ss_dssp             CCSSHHHHHHHHTSTTHHH-HTTTCEEEECC-CCCTTHHHHHHHHHHHT-TC-----EEEEEEEESCGGGTTCTTC--EE
T ss_pred             EeCCHHHHHHHhcccchhh-ccCCCEEEECC-CCCHHHHHHHHHHHHHc-CC-----eEEecccccCcccccCCce--EE
Confidence            99975 5888886  5644 46799999998 56666556666666543 42     2333333321  1112222  34


Q ss_pred             EccCCHHHHHHHHHHHhcCCCeEEEc--CC-hHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHc
Q 012720          281 VASKDRKLANAVQQLLASKHLRISTS--SD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKM  357 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~v~~~--~d-i~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~  357 (458)
                      +.+++++.+++++++|+..+-++.+.  ++ ...   +.++|                  .+......+++|+..++++.
T Consensus       142 ~~gg~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~---g~~~k------------------~~~~~~~~~~~Ea~~la~~~  200 (306)
T 3l6d_A          142 IHTGDREAFEQHRALLEGLAGHTVFLPWDEALAF---ATVLH------------------AHAFAAMVTFFEAVGAGDRF  200 (306)
T ss_dssp             EEEECHHHHHHHHHHHHTTCSEEEECCHHHHHHH---HHHHH------------------HHHHHHHHHHHHHHHHHHHT
T ss_pred             EEcCCHHHHHHHHHHHHHhcCCEEEecCCCCccH---HHHHH------------------HHHHHHHHHHHHHHHHHHHc
Confidence            55568999999999999986677765  43 211   11222                  12233467899999999999


Q ss_pred             CCCccccccccCCcchhhhhccCCCccchHHHHhh-CCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHH
Q 012720          358 GAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVAR  436 (458)
Q Consensus       358 Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~-~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~  436 (458)
                      |++++.+.++...+...  ..+....+  .+..+. ..++.. .    .......||++++++.|++.|+++|+.+.+.+
T Consensus       201 Gld~~~~~~~~~~~~~~--~~s~~~~~--~~~~~~~~~~~~~-~----~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~  271 (306)
T 3l6d_A          201 GLPVSKTARLLLETSRF--FVADALEE--AVRRLETQDFKGD-Q----ARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQ  271 (306)
T ss_dssp             TCCHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHTCCCTT-S----SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhhh--cccHHHHH--HHHHHhcCCCCCC-c----ccHHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence            99999887642110000  00000000  111221 111110 0    01122459999999999999999999999998


Q ss_pred             HHh
Q 012720          437 IID  439 (458)
Q Consensus       437 ll~  439 (458)
                      ++.
T Consensus       272 ~~~  274 (306)
T 3l6d_A          272 VVQ  274 (306)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            884

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.89  E-value=3.9e-23  Score=217.55  Aligned_cols=279  Identities=15%  Similarity=0.078  Sum_probs=192.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC---CCCEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL---GADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~---~aDiV  203 (458)
                      |||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+. |..    +   .+.++..+.+++++++   ++|+|
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~g~~----~---~~~~i~~~~~~~e~v~~l~~aDvV   72 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTYSKSEEFMKANASA----P---FAGNLKAFETMEAFAASLKKPRKA   72 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTTTS----T---TGGGEEECSCHHHHHHHBCSSCEE
T ss_pred             CEEEEEChHHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcCCC----C---CCCCeEEECCHHHHHhcccCCCEE
Confidence            68999999999999999999999  9999999999999988875 321    1   1224677788888766   59999


Q ss_pred             EEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-H-hccCCeEEE
Q 012720          204 LHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-L-MNKLPTAMV  280 (458)
Q Consensus       204 ilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e-i-~~g~~t~v~  280 (458)
                      |+|||+. .++++++++.+.++++++||+++||....+ ..+.+.+.+. |.     .++..|....+ . ..|.  .++
T Consensus        73 ilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~-~~l~~~l~~~-g~-----~~v~~pv~gg~~~a~~g~--~i~  143 (478)
T 1pgj_A           73 LILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQ-GRRAQQLEAA-GL-----RFLGMGISGGEEGARKGP--AFF  143 (478)
T ss_dssp             EECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHH-HHHHHHHHTT-TC-----EEEEEEEESHHHHHHHCC--EEE
T ss_pred             EEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHH-HHHHHHHHHC-CC-----eEEEeeccCCHHHHhcCC--eEe
Confidence            9999985 799999999999999999999999876542 2333444331 22     22333333222 1 2333  344


Q ss_pred             EccCCHHHHHHHHHHHhcCCCe-------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHH
Q 012720          281 VASKDRKLANAVQQLLASKHLR-------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL  353 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~-------v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~l  353 (458)
                      . +++++..+.++++|+..+.+       +.+.++.                 |.+..+|+.+|....++.+++.|+..+
T Consensus       144 ~-gg~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~-----------------G~g~~~Kl~~N~~~~~~~~~i~Ea~~l  205 (478)
T 1pgj_A          144 P-GGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG-----------------GAGSCVKMYHNSGEYAILQIWGEVFDI  205 (478)
T ss_dssp             E-EECHHHHHHHHHHHHHHSCBCTTSCBSCCCCCST-----------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-cCCHHHHHHHHHHHHHhcccccCCCeeEEEeCCc-----------------hHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4 44788899999999987765       3333332                 333344566677778889999999999


Q ss_pred             HHHcCCCccccccccC------Ccc-hhhhhccCCCccchHHHHhh----CC-CChHHHHhhccccchhhhHH-HHHHHH
Q 012720          354 ATKMGAKPATITGLSG------TGD-IMLTCFVNLSRNRTVGVRLG----SG-EKLDDILSSMNQVAEGVSTA-GAVIAL  420 (458)
Q Consensus       354 a~a~Gi~~~~~~~~~g------~gd-~~~t~~~~~srn~~~g~~l~----~g-~~~e~~~~~~~~~~eg~kd~-g~v~~l  420 (458)
                      +++.|++++++.++..      .++ .+..+.         +..+.    .| +..+.+.+.     .+.|+. +.++++
T Consensus       206 ~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~---------~~~l~~~d~~G~~~ld~i~D~-----~~~kgtg~~~~~~  271 (478)
T 1pgj_A          206 LRAMGLNNDEVAAVLEDWKSKNFLKSYMLDIS---------IAAARAKDKDGSYLTEHVMDR-----IGSKGTGLWSAQE  271 (478)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHH---------HHHHHCBCTTSSBGGGGBCCC-----CCCCSHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHhccCCCcCchHHHhh---------chhhhcCCCCChhHHHHHHHH-----hcCccHHHHHHHH
Confidence            9999999887765421      111 111111         11121    23 122212110     112444 699999


Q ss_pred             HHHcCCCCcHHHH-HH-HHHhcCCCHHHHHHHHhcCCC
Q 012720          421 AQKYNVKMPVLTA-VA-RIIDNELTPKKAVLELMSLPQ  456 (458)
Q Consensus       421 A~~~gv~~P~~~~-v~-~ll~~~~~~~~~~~~l~~~~~  456 (458)
                      |+++|+++|+++. ++ +++....+++....+++.-|.
T Consensus       272 A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~  309 (478)
T 1pgj_A          272 ALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGIT  309 (478)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTT
T ss_pred             HHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCC
Confidence            9999999999998 65 888888899999999887664

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.89  E-value=2.2e-22  Score=204.26  Aligned_cols=197  Identities=7%  Similarity=0.014  Sum_probs=142.5

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      ..++|+++|||+|||+|.||..||.+|+++|  ++|++|||++++++.+.+.|.              ..++++++++++
T Consensus        15 ~~~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G--~~V~v~dr~~~~~~~l~~~g~--------------~~~~s~~e~~~~   78 (358)
T 4e21_A           15 TENLYFQSMQIGMIGLGRMGADMVRRLRKGG--HECVVYDLNVNAVQALEREGI--------------AGARSIEEFCAK   78 (358)
T ss_dssp             -------CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTTC--------------BCCSSHHHHHHH
T ss_pred             cchhhhcCCEEEEECchHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHCCC--------------EEeCCHHHHHhc
Confidence            3558888899999999999999999999999  999999999999998887642              345688888777


Q ss_pred             C---CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCC
Q 012720          200 A---DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLP  276 (458)
Q Consensus       200 a---DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~  276 (458)
                      +   |+||+|||...+++++.++.+.++++++||+++++ .+.+...+.+.+.+. |..+.++.+..||..+.   .|. 
T Consensus        79 a~~~DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~-g~~~vdapVsGg~~~a~---~G~-  152 (358)
T 4e21_A           79 LVKPRVVWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNS-HYQDDIRRADQMRAQ-GITYVDVGTSGGIFGLE---RGY-  152 (358)
T ss_dssp             SCSSCEEEECSCGGGHHHHHHHHGGGCCTTCEEEECSSC-CHHHHHHHHHHHHTT-TCEEEEEEEECGGGHHH---HCC-
T ss_pred             CCCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEeCCCC-ChHHHHHHHHHHHHC-CCEEEeCCCCCCHHHHh---cCC-
Confidence            8   99999999889999999999999999999999964 443334444444433 33223444444443333   343 


Q ss_pred             eEEEEccCCHHHHHHHHHHHhcCC--------------------CeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 012720          277 TAMVVASKDRKLANAVQQLLASKH--------------------LRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGN  336 (458)
Q Consensus       277 t~v~i~g~d~e~~e~l~~lL~~~g--------------------~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~  336 (458)
                       . ++.+++++.+++++++|+..+                    ..+.+.++.-                 .+..+|+.+
T Consensus       153 -~-im~GG~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G-----------------~g~~~Kl~~  213 (358)
T 4e21_A          153 -C-LMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSG-----------------AGHFVKMVH  213 (358)
T ss_dssp             -E-EEEESCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTT-----------------HHHHHHHHH
T ss_pred             -e-eeecCCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCcc-----------------HHHHHHHHH
Confidence             3 445568899999999999876                    3455555543                 333344555


Q ss_pred             cHHHHHHHHHHHHHHHHHHHc
Q 012720          337 NSMAALVAQGCSEIRWLATKM  357 (458)
Q Consensus       337 n~~~al~~~~l~E~~~la~a~  357 (458)
                      |.+......+++|+..++++.
T Consensus       214 n~l~~~~i~~~aE~~~la~~a  234 (358)
T 4e21_A          214 NGIEYGLMAAYAEGLNILHHA  234 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            666667788999999999998

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.89  E-value=1e-22  Score=214.19  Aligned_cols=277  Identities=14%  Similarity=0.125  Sum_probs=185.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC---CCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG---ADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDiV  203 (458)
                      +|||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+...      +    .++..+.+++++++.   +|+|
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~------~----~gi~~~~s~~e~v~~l~~aDvV   72 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRG--YTVAIYNRTTSKTEEVFKEHQ------D----KNLVFTKTLEEFVGSLEKPRRI   72 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTT------T----SCEEECSSHHHHHHTBCSSCEE
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHhCc------C----CCeEEeCCHHHHHhhccCCCEE
Confidence            478999999999999999999999  999999999999988876421      0    236677788887765   9999


Q ss_pred             EEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH--hccCCeEEE
Q 012720          204 LHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL--MNKLPTAMV  280 (458)
Q Consensus       204 ilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei--~~g~~t~v~  280 (458)
                      |+|||+ ..++++++++.+.++++++||++++|...++ ..    +.+.+..  ..+.++..|....+.  ..|. + ++
T Consensus        73 ilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~-~~----l~~~l~~--~g~~~v~~pv~gg~~~a~~g~-~-i~  143 (474)
T 2iz1_A           73 MLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDT-MR----RNAELAD--SGINFIGTGVSGGEKGALLGP-S-MM  143 (474)
T ss_dssp             EECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HH----HHHHTTT--SSCEEEEEEECSHHHHHHHCC-C-EE
T ss_pred             EEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHH-HH----HHHHHHH--CCCeEECCCCCCChhhhccCC-e-EE
Confidence            999998 5799999999999999999999998875432 22    2233322  123344455443322  2343 3 33


Q ss_pred             EccCCHHHHHHHHHHHhcCCCe--------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHH
Q 012720          281 VASKDRKLANAVQQLLASKHLR--------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW  352 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~--------v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~  352 (458)
                      . +++++..+.++++|+..+.+        +.+.++.                 |....+|+.+|....+..+++.|+..
T Consensus       144 ~-gg~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~-----------------g~g~~~Kl~~N~~~~~~~~~laEa~~  205 (474)
T 2iz1_A          144 P-GGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGAN-----------------GAGHYVKMVHNGIEYGDMQLIAESYD  205 (474)
T ss_dssp             E-EECHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBST-----------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             e-cCCHHHHHHHHHHHHHHhcccccCCCceEEEECCc-----------------cHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4 44889999999999987765        3444432                 23333455666777788899999999


Q ss_pred             HHHH-cCCCcccccccc-----C-CcchhhhhccC--CCccchHHHHhhCCCChHHHHhhccccchhhhHHH-HHHHHHH
Q 012720          353 LATK-MGAKPATITGLS-----G-TGDIMLTCFVN--LSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAG-AVIALAQ  422 (458)
Q Consensus       353 la~a-~Gi~~~~~~~~~-----g-~gd~~~t~~~~--~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g-~v~~lA~  422 (458)
                      ++++ +|++++++.++.     + +++.+.++++.  .++++..|.     +.++.+.+.     .+.|+.+ .++++|+
T Consensus       206 l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~g~-----~~vd~i~D~-----~~~k~tG~~~~~~A~  275 (474)
T 2iz1_A          206 LLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEG-----YIVDKILDK-----AGNKGTGKWTSESAL  275 (474)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHTTCBCSSSSS-----BGGGGBCSC-----CCCCSHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhHhhcCCCCCCh-----hHHHHHHHh-----hcccchHHHHHHHHH
Confidence            9999 899988776543     2 33444444432  234433220     122211110     1225555 6899999


Q ss_pred             HcCCCCcHHHHH--HHHHhcCCCHHHHHHHHh
Q 012720          423 KYNVKMPVLTAV--ARIIDNELTPKKAVLELM  452 (458)
Q Consensus       423 ~~gv~~P~~~~v--~~ll~~~~~~~~~~~~l~  452 (458)
                      ++|+++|+++.+  ++++....+.+....++.
T Consensus       276 ~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~  307 (474)
T 2iz1_A          276 DLGVPLPLITESVFARYISTYKDERVKASKVL  307 (474)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_pred             HcCCCCchHHHHHHHHHhhhhhhhhHHhhhcc
Confidence            999999999874  444444444443333333

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.88  E-value=1.5e-22  Score=209.65  Aligned_cols=272  Identities=13%  Similarity=0.111  Sum_probs=186.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~  199 (458)
                      ..|..|||+|.||.++|..|+++|  |+|++||+++++++.+++. ..+.+.++..       .+.++.+++++    ++
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G--~~V~~~D~~~~kv~~L~~g-~~pi~epgl~~ll~~~~~~g~l~~ttd~----~~   83 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHG--VDVLGVDINQQTIDKLQNG-QISIEEPGLQEVYEEVLSSGKLKVSTTP----EA   83 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTT-CCSSCCTTHHHHHHHHHHTTCEEEESSC----CC
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHCC-CCCcCCCCHHHHHHhhcccCceEEeCch----hh
Confidence            568999999999999999999999  9999999999999999874 4555666542       14567787763    57


Q ss_pred             CCEEEEcCcccc------------HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-CCCEEEEECcc
Q 012720          200 ADYCLHAMPVQF------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQPFIALSGPS  266 (458)
Q Consensus       200 aDiVilaVp~~~------------v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~-~~~~~vl~gP~  266 (458)
                      ||+||+|||+..            +..+.+++.+.++++++||..+ ++.+++.+.+.+.+.+..|.. ..++.++++|.
T Consensus        84 aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S-TV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe  162 (431)
T 3ojo_A           84 SDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES-TIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE  162 (431)
T ss_dssp             CSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS-CCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred             CCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec-CCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence            999999999754            7778889999999999999888 899998888777665543421 24578999997


Q ss_pred             cHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Q 012720          267 FALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL  342 (458)
Q Consensus       267 ~a~ei~----~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al  342 (458)
                      +..+..    ...++.+ ++|.+++.+++++++|+..+....+..++...|.                 .|+.+|.+.++
T Consensus       163 ~~~~G~A~~~~~~p~~I-v~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~-----------------~Kl~~N~~~a~  224 (431)
T 3ojo_A          163 RVLPGKILEELVHNNRI-IGGVTKACIEAGKRVYRTFVQGEMIETDARTAEM-----------------SKLMENTYRDV  224 (431)
T ss_dssp             CCCTTSHHHHHHHSCEE-EEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHH-----------------HHHHHHHHHHH
T ss_pred             cCCCcchhhcccCCCEE-EEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHH-----------------HHHHHHHHHHH
Confidence            754321    1234455 4555899999999999987654445566654444                 45566777888


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHH
Q 012720          343 VAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQ  422 (458)
Q Consensus       343 ~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~  422 (458)
                      ....++|+..+|+++|+|++.+.+..+...-+        ..+.+|.-+ -|.++             .||..+++..|+
T Consensus       225 ~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~ri--------~~l~pG~G~-GG~C~-------------pkD~~~L~~~a~  282 (431)
T 3ojo_A          225 NIALANELTKICNNLNINVLDVIEMANKHPRV--------NIHQPGPGV-GGHCL-------------AVDPYFIIAKDP  282 (431)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTC--------CCCCCCSCC-CCCCB-------------CSCC--------
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHccCCCc--------ccCCCCCCc-cccch-------------hhhHHHHHHHHH
Confidence            89999999999999999998887653321111        011112111 12332             266678888888


Q ss_pred             HcCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 012720          423 KYNVKMPVLTAVARIIDNELTPKKAVLEL  451 (458)
Q Consensus       423 ~~gv~~P~~~~v~~ll~~~~~~~~~~~~l  451 (458)
                      ++|   ++.+++.++  +...+.-+++++
T Consensus       283 ~~~---~li~~~~~i--N~~~~~~v~~~~  306 (431)
T 3ojo_A          283 ENA---KLIQTGREI--NNSMPAYVVDTT  306 (431)
T ss_dssp             -CC---HHHHHHHHH--HHTHHHHHHHHH
T ss_pred             HHh---HHHHHHHHH--HHHhHHHHHHHH
Confidence            877   777777776  444555555544

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.88  E-value=5.7e-22  Score=208.25  Aligned_cols=286  Identities=14%  Similarity=0.170  Sum_probs=195.5

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C----CCceEEeCCHHhhc
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L----PENVIATTDAKTAL  197 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~--l----~~~i~a~~~~~ea~  197 (458)
                      |+.+|||+|||+|.||..+|..|+++|.+++|++|||++++++.+++.+ ...+.++..  +    ..++.+++++++++
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~-~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~   80 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPT-LPIYEPGLKEVVESCRGKNLFFSTNIDDAI   80 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS-CSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHHhhcCCEEEECCHHHHH
Confidence            5557899999999999999999999921299999999999999887643 333333321  1    13578888988888


Q ss_pred             CCCCEEEEcCcccc---------------HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE
Q 012720          198 LGADYCLHAMPVQF---------------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL  262 (458)
Q Consensus       198 ~~aDiVilaVp~~~---------------v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl  262 (458)
                      +++|+||+|||+..               +.++++++.+.++++++||+++ ++.+.+.+.+.+.+.+. +.....+.+.
T Consensus        81 ~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~g~~~~l~~~l~~~-~~~~~d~~V~  158 (467)
T 2q3e_A           81 KEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKS-TVPVRAAESIRRIFDAN-TKPNLNLQVL  158 (467)
T ss_dssp             HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECS-CCCTTHHHHHHHHHHHT-CCTTCEEEEE
T ss_pred             hcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECC-cCCchHHHHHHHHHHHh-CCCCCCeEEE
Confidence            99999999998643               5678888999999999999887 57777666666766654 2222456778


Q ss_pred             ECcccHHHHh----ccCCeEEEEcc----CCHHHHHHHHHHHhcC-CCeEEEcCChHHHHHHHHHHHHHHHHHHHHhccc
Q 012720          263 SGPSFALELM----NKLPTAMVVAS----KDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN  333 (458)
Q Consensus       263 ~gP~~a~ei~----~g~~t~v~i~g----~d~e~~e~l~~lL~~~-g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~k  333 (458)
                      .+|.++.+..    ...+..+++++    .+++..++++++|+.. +..+.+..++...+|.|++.|             
T Consensus       159 ~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N-------------  225 (467)
T 2q3e_A          159 SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAAN-------------  225 (467)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHH-------------
T ss_pred             eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHH-------------
Confidence            8888764321    12233355665    3678899999999987 655666677777777776555             


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhH
Q 012720          334 LGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVST  413 (458)
Q Consensus       334 l~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd  413 (458)
                          .+.++....++|+..+|++.|++++++.+..+....+    +  ...+..|..+ .|.+.             .||
T Consensus       226 ----~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~----~--~~~~~pg~g~-gg~c~-------------~kD  281 (467)
T 2q3e_A          226 ----AFLAQRISSINSISALCEATGADVEEVATAIGMDQRI----G--NKFLKASVGF-GGSCF-------------QKD  281 (467)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTSTTT----C--SSSCCCCSCC-CSSSH-------------HHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCCCC----C--ccccCCCCCC-CCccH-------------HHH
Confidence                4466778899999999999999998887643221100    0  0111111111 11221             389


Q ss_pred             HHHHHHHHHHcCCC--CcHHHHHHHHHhcCCCHHHHHHHH
Q 012720          414 AGAVIALAQKYNVK--MPVLTAVARIIDNELTPKKAVLEL  451 (458)
Q Consensus       414 ~g~v~~lA~~~gv~--~P~~~~v~~ll~~~~~~~~~~~~l  451 (458)
                      .+++++.|+++|++  .++.+++.++  +...+....+++
T Consensus       282 ~~~l~~~a~~~g~~~~~~~~~~~~~~--n~~~~~~~~~~~  319 (467)
T 2q3e_A          282 VLNLVYLCEALNLPEVARYWQQVIDM--NDYQRRRFASRI  319 (467)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHH--HHHhHHHHHHHH
Confidence            99999999999987  5555555443  223344444444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.87  E-value=2.1e-22  Score=212.24  Aligned_cols=269  Identities=12%  Similarity=0.061  Sum_probs=181.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc---CCCCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL---LGADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~---~~aDiVi  204 (458)
                      |||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+...     ++    .++..+.++++++   +++|+||
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~-----~g----~gi~~~~~~~e~v~~l~~aDvVi   71 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEA-----KG----TKVLGAHSLEEMVSKLKKPRRII   71 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTT-----TT----SSCEECSSHHHHHHHBCSSCEEE
T ss_pred             CeEEEEChHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhccc-----cC----CCeEEeCCHHHHHhhccCCCEEE
Confidence            68999999999999999999999  999999999999998876210     01    1356677888876   4899999


Q ss_pred             EcCccc-cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          205 HAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       205 laVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      +|||+. .++++++++.+.++++++||+++||...++ ..+.+.+.+. |     +.++.+|....+...+.+..++.+ 
T Consensus        72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~-~~l~~~l~~~-g-----~~~v~~pv~g~~~~a~~g~~i~~g-  143 (482)
T 2pgd_A           72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDT-MRRCRDLKDK-G-----ILFVGSGVSGGEDGARYGPSLMPG-  143 (482)
T ss_dssp             ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHH-HHHHHHHHHT-T-----CEEEEEEEESHHHHHHHCCEEEEE-
T ss_pred             EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHH-HHHHHHHHHc-C-----CeEeCCCCCCChhhhccCCeEEeC-
Confidence            999985 799999999999999999999998876543 2334445432 3     234455554433322222334444 


Q ss_pred             CCHHHHHHHHHHHhcCCCeE-------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH
Q 012720          284 KDRKLANAVQQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATK  356 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v-------~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a  356 (458)
                      ++++..+.++++|+..+.++       .+.++                 .|.+..+|+.+|....++.++++|+..++++
T Consensus       144 g~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~-----------------~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~  206 (482)
T 2pgd_A          144 GNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGD-----------------DGAGHFVKMVHNGIEYGDMQLICEAYHLMKD  206 (482)
T ss_dssp             ECTTTHHHHHHHHHHHSCBCTTSCBSCCCCEE-----------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhhccCCCcceEEECC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46788899999999888765       22221                 1344455667777788889999999999999


Q ss_pred             c-CCCccccccccC---CcchhhhhccCCCccchHHHHhhCC-----CChHHHHhhccccchhhhHHHHHHHHHHHcCCC
Q 012720          357 M-GAKPATITGLSG---TGDIMLTCFVNLSRNRTVGVRLGSG-----EKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK  427 (458)
Q Consensus       357 ~-Gi~~~~~~~~~g---~gd~~~t~~~~~srn~~~g~~l~~g-----~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~  427 (458)
                      . |++++++.++..   .++    +.+...+++  ...+..+     +.++.+.    ......++.+.++++|+++|++
T Consensus       207 ~~G~~~~~~~~~~~~w~~g~----~~S~l~~~~--~~~l~~~d~~~~~~ld~i~----d~~~~k~t~~~~~~~A~~~Gv~  276 (482)
T 2pgd_A          207 VLGLGHKEMAKAFEEWNKTE----LDSFLIEIT--ASILKFQDADGKHLLPKIR----DSAGQKGTGKWTAISALEYGVP  276 (482)
T ss_dssp             TSCCCHHHHHHHHHHHTTTT----TCBHHHHHH--HHHHHCBCTTSSBSGGGSC----CCCCCCSHHHHHHHHHHHHTCC
T ss_pred             cCCcCHHHHHHHHHHhcCCC----cCchHHHHH--hHHhhccCCCCCeeecccc----cccccccHHHHHHHHHHHcCCC
Confidence            9 999887765421   111    111111111  1112211     1222111    1111235567899999999999


Q ss_pred             CcHHH-HHHHHHhcCC
Q 012720          428 MPVLT-AVARIIDNEL  442 (458)
Q Consensus       428 ~P~~~-~v~~ll~~~~  442 (458)
                      +|+++ .+|+.+....
T Consensus       277 ~P~i~~av~~~~~s~~  292 (482)
T 2pgd_A          277 VTLIGEAVFARCLSSL  292 (482)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHhhhhh
Confidence            99995 7888775443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.87  E-value=8.3e-22  Score=206.81  Aligned_cols=263  Identities=13%  Similarity=0.095  Sum_probs=180.6

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC---CCCE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GADY  202 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~---~aDi  202 (458)
                      .+|||+|||+|.||..||.+|+++|  ++|++|||++++++.+.+.+...         .++..+.+++++++   ++|+
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~g---------~~i~~~~s~~e~v~~l~~aDv   71 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEAKG---------TKVVGAQSLKEMVSKLKKPRR   71 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTTTT---------SSCEECSSHHHHHHTBCSSCE
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhcccCC---------CceeccCCHHHHHhhccCCCE
Confidence            4679999999999999999999999  99999999999999988764210         12445678888765   5999


Q ss_pred             EEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHh--ccCCeEE
Q 012720          203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELM--NKLPTAM  279 (458)
Q Consensus       203 VilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~--~g~~t~v  279 (458)
                      ||+|||. ..++++++++.+.++++++||+++++...++ ..+.+.+.+. |.     .++..|....+.+  .|.  .+
T Consensus        72 Vil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t-~~~~~~l~~~-Gi-----~fvd~pVsGg~~gA~~G~--~i  142 (484)
T 4gwg_A           72 IILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDT-TRRCRDLKAK-GI-----LFVGSGVSGGEEGARYGP--SL  142 (484)
T ss_dssp             EEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-TC-----EEEEEEEESHHHHHHHCC--EE
T ss_pred             EEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHH-HHHHHHHHhh-cc-----ccccCCccCCHHHHhcCC--ee
Confidence            9999998 4899999999999999999999997665443 3344445443 42     2333343332221  333  34


Q ss_pred             EEccCCHHHHHHHHHHHhcCCCeE-------EEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHH
Q 012720          280 VVASKDRKLANAVQQLLASKHLRI-------STSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRW  352 (458)
Q Consensus       280 ~i~g~d~e~~e~l~~lL~~~g~~v-------~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~  352 (458)
                      + .+++++.+++++++|+..+.++       .+.++                 .|.+..+|+.+|.+.....++++|+..
T Consensus       143 m-~GG~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~-----------------~Gag~~vKmv~N~i~~~~m~~iaEa~~  204 (484)
T 4gwg_A          143 M-PGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGD-----------------EGAGHFVKMVHNGIEYGDMQLICEAYH  204 (484)
T ss_dssp             E-EEECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEE-----------------TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             e-cCCCHHHHHHHHHHHHHhcCcccCCCceEEEECC-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 4457889999999999766554       23222                 255667788889989999999999999


Q ss_pred             HHHH-cCCCcccccccc-----CCcchhhhhccCCCccchHHHHhh----CC-CChHHHHhhccccchhhhHHHHHHHHH
Q 012720          353 LATK-MGAKPATITGLS-----GTGDIMLTCFVNLSRNRTVGVRLG----SG-EKLDDILSSMNQVAEGVSTAGAVIALA  421 (458)
Q Consensus       353 la~a-~Gi~~~~~~~~~-----g~gd~~~t~~~~~srn~~~g~~l~----~g-~~~e~~~~~~~~~~eg~kd~g~v~~lA  421 (458)
                      ++++ +|++++++.++.     |.++..      ..+++  ...+.    .| ..++.+....++.-+|.    -.++.|
T Consensus       205 l~~~~~Gld~~~l~~v~~~w~~G~~~S~------l~e~~--~~~l~~~D~~g~~~ld~i~d~~~~kgtG~----wt~~~A  272 (484)
T 4gwg_A          205 LMKDVLGMAQDEMAQAFEDWNKTELDSF------LIEIT--ANILKFQDTDGKHLLPKIRDSAGQKGTGK----WTAISA  272 (484)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHTTTTTCBH------HHHHH--HHHHHCBCTTSSBSGGGSCCCCCSSCTTH----HHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHcCCCccch------HHHHH--HHHHhcCCccCCccHHHHhccccCcchHH----HHHHHH
Confidence            9999 999998876642     111111      00111  11222    12 23444544445555553    345667


Q ss_pred             HHcCCCCc-HHHHHHHHH
Q 012720          422 QKYNVKMP-VLTAVARII  438 (458)
Q Consensus       422 ~~~gv~~P-~~~~v~~ll  438 (458)
                      .++|+++| +.++++..+
T Consensus       273 ~~~gvp~p~i~~av~~R~  290 (484)
T 4gwg_A          273 LEYGVPVTLIGEAVFARC  290 (484)
T ss_dssp             HHHTCCCHHHHHHHHHHH
T ss_pred             HHcCCCchHHHHHHHHHH
Confidence            79999999 556666655

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.87  E-value=7.4e-22  Score=191.37  Aligned_cols=243  Identities=12%  Similarity=0.139  Sum_probs=161.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r--~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|||+|+||.+||..|+++|  ++|++|+|  +++.++.+.+.|.              .  ++++++++++|+||+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g--~~V~~~~~~~~~~~~~~~~~~g~--------------~--~~~~~~~~~aDvvi~   62 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGRSPSTIERARTVGV--------------T--ETSEEDVYSCPVVIS   62 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTCCHHHHHHHHHHTC--------------E--ECCHHHHHTSSEEEE
T ss_pred             CeEEEEechHHHHHHHHHHHHCC--CeEEEeCCccCHHHHHHHHHCCC--------------c--CCHHHHHhcCCEEEE
Confidence            68999999999999999999999  99999999  7777777776542              2  366777889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC-CCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP-RQPFIALSGPSFALELMNKLPTAMVVASK  284 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~-~~~~~vl~gP~~a~ei~~g~~t~v~i~g~  284 (458)
                      |||.+...+.+.++.+.+++  +||+++ ++.+.+.+.    +.+.++.. +....++.+|.   ....|..  +++++.
T Consensus        63 ~v~~~~~~~~~~~~~~~~~~--~vi~~s-~~~~~~~~~----l~~~~~~~g~~~~~v~~~~~---~~~~g~~--~~~~g~  130 (264)
T 1i36_A           63 AVTPGVALGAARRAGRHVRG--IYVDIN-NISPETVRM----ASSLIEKGGFVDAAIMGSVR---RKGADIR--IIASGR  130 (264)
T ss_dssp             CSCGGGHHHHHHHHHTTCCS--EEEECS-CCCHHHHHH----HHHHCSSSEEEEEEECSCHH---HHGGGCE--EEEEST
T ss_pred             ECCCHHHHHHHHHHHHhcCc--EEEEcc-CCCHHHHHH----HHHHHhhCCeeeeeeeCCcc---ccccCCe--EEecCC
Confidence            99987655556778777765  778775 666543333    33433321 11223333332   2223443  444554


Q ss_pred             CHHHHHHHHHHHhcCCCeEEEcCC-hHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          285 DRKLANAVQQLLASKHLRISTSSD-VTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~~~~d-i~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      +.   +++++ |+..|.++...++ +....|.|+..|                 .+...+..++.|+..++++.|++++ 
T Consensus       131 ~~---~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n-----------------~~~~~~~~~~~Ea~~la~~~G~~~~-  188 (264)
T 1i36_A          131 DA---EEFMK-LNRYGLNIEVRGREPGDASAIKMLRS-----------------SYTKGVSALLWETLTAAHRLGLEED-  188 (264)
T ss_dssp             TH---HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred             cH---HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHcCCcHH-
Confidence            43   78888 9999988766554 555556554444                 4445668899999999999999976 


Q ss_pred             cccc-cC-Cc-chhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhc
Q 012720          364 ITGL-SG-TG-DIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDN  440 (458)
Q Consensus       364 ~~~~-~g-~g-d~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~  440 (458)
                      ..+. .. .+ +...++.+..      ..++..|++             ..||+++++++++++ +++|++++++++++.
T Consensus       189 ~~~~~~~~~g~~~~~~~~~~~------~~~~~~g~~-------------~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~  248 (264)
T 1i36_A          189 VLEMLEYTEGNDFRESAISRL------KSSCIHARR-------------RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDK  248 (264)
T ss_dssp             HHHHHHTTSCSSTHHHHHHHH------HHHHHTHHH-------------HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccHHHHHHHHh------cCCCCcchh-------------hHHHHHHHHHHHHHh-cCchHHHHHHHHHHH
Confidence            4432 11 11 1111111100      111111111             358999999999999 999999999999875


Q ss_pred             CC
Q 012720          441 EL  442 (458)
Q Consensus       441 ~~  442 (458)
                      ..
T Consensus       249 ~~  250 (264)
T 1i36_A          249 LK  250 (264)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.5e-22  Score=207.67  Aligned_cols=258  Identities=10%  Similarity=0.043  Sum_probs=176.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-hcCCCccCCCCCCCCceEEeCCHHhhcCC---CCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-KHCNCRYFPEQKLPENVIATTDAKTALLG---ADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~-~g~~~~~~~~~~l~~~i~a~~~~~ea~~~---aDi  202 (458)
                      ..+|+|||+|.||++||.+|+++|  ++|++|+|++++++.+.+ ...      +    .++..+.+++++++.   +|+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G--~~V~v~dr~~~~~~~l~~~~~~------~----~gi~~~~s~~e~v~~l~~aDv   77 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHG--FTVCAYNRTQSKVDHFLANEAK------G----KSIIGATSIEDFISKLKRPRK   77 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSHHHHHHHHTTTT------T----SSEECCSSHHHHHHTSCSSCE
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHccccc------C----CCeEEeCCHHHHHhcCCCCCE
Confidence            468999999999999999999999  999999999999998876 210      0    235667788887766   999


Q ss_pred             EEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH--hccCCeEE
Q 012720          203 CLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL--MNKLPTAM  279 (458)
Q Consensus       203 VilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei--~~g~~t~v  279 (458)
                      ||+|||+ .+++++++++.+.++++++||+++++....+ ..+.+.+.+. |.     .++..|....+.  ..|.  .+
T Consensus        78 Vil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~-~~l~~~l~~~-g~-----~~v~~pVsgg~~~a~~G~--~i  148 (497)
T 2p4q_A           78 VMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDS-NRRYEELKKK-GI-----LFVGSGVSGGEEGARYGP--SL  148 (497)
T ss_dssp             EEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHH-HHHHHHHHHT-TC-----EEEEEEEESHHHHHHHCC--EE
T ss_pred             EEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHH-HHHHHHHHHc-CC-----ceeCCCcccChhHhhcCC--eE
Confidence            9999998 5899999999999999999999998765432 3344555442 32     233334332222  2333  33


Q ss_pred             EEccCCHHHHHHHHHHHhcCCCe------EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHH
Q 012720          280 VVASKDRKLANAVQQLLASKHLR------ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWL  353 (458)
Q Consensus       280 ~i~g~d~e~~e~l~~lL~~~g~~------v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~l  353 (458)
                      +. +++++.+++++++|+..+.+      +.+.++.                 |.+..+|+++|.+..+..++++|+..+
T Consensus       149 m~-gg~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~-----------------G~g~~~Kl~~N~~~~~~~~~laEa~~l  210 (497)
T 2p4q_A          149 MP-GGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPA-----------------GAGHYVKMVHNGIEYGDMQLICEAYDI  210 (497)
T ss_dssp             EE-EECGGGHHHHHHHHHHHSCEETTEESCCCCEET-----------------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ee-cCCHHHHHHHHHHHHHhcCccCCCCceEEECCc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34 55788899999999988776      3333321                 444556677788888889999999999


Q ss_pred             HHH-cCCCccccccccC---CcchhhhhccCCCccchHHHHhhCC-----CChHHHHhhccccchhhhHHH-HHHHHHHH
Q 012720          354 ATK-MGAKPATITGLSG---TGDIMLTCFVNLSRNRTVGVRLGSG-----EKLDDILSSMNQVAEGVSTAG-AVIALAQK  423 (458)
Q Consensus       354 a~a-~Gi~~~~~~~~~g---~gd~~~t~~~~~srn~~~g~~l~~g-----~~~e~~~~~~~~~~eg~kd~g-~v~~lA~~  423 (458)
                      +++ +|++++++.++..   .++.    .+...+++  +..+.++     +.++.+.     -..+.|+.+ .+++.|++
T Consensus       211 ~~~~lGl~~~~~~~~~~~w~~g~~----~S~l~~~~--~~~l~~~d~~~~~~vd~i~-----D~~~~KgtG~~~~~~A~~  279 (497)
T 2p4q_A          211 MKRLGGFTDKEISDVFAKWNNGVL----DSFLVEIT--RDILKFDDVDGKPLVEKIM-----DTAGQKGTGKWTAINALD  279 (497)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHTTTT----CBHHHHHH--HHHHTCBCTTSSBGGGGSC-----CCCCCCSHHHHHHHHHHH
T ss_pred             HHHccCCCHHHHHHHHHHhcCCcc----ccHHHHHH--HHHHhcCCCCCccHHHHHH-----HhhccchHHHHHHHHHHH
Confidence            999 6999988776421   1110    00001111  1222221     1122111     011236666 68999999


Q ss_pred             cCCCCcHHHHH
Q 012720          424 YNVKMPVLTAV  434 (458)
Q Consensus       424 ~gv~~P~~~~v  434 (458)
                      +|+++|+++..
T Consensus       280 ~Gv~~P~~~~a  290 (497)
T 2p4q_A          280 LGMPVTLIGEA  290 (497)
T ss_dssp             HTCCCHHHHHH
T ss_pred             cCCCCchHHHH
Confidence            99999999873

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.87  E-value=9.4e-22  Score=203.39  Aligned_cols=270  Identities=20%  Similarity=0.196  Sum_probs=184.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC--C---CCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK--L---PENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~--l---~~~i~a~~~~~ea~~~aD  201 (458)
                      +|||+|||+|.||..+|..|++ |  ++|++||+++++++.+++. ....+.++..  +   ..++++++|+++++++||
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G--~~V~~~D~~~~~v~~l~~g-~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aD  111 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-N--HEVVALDIVQAKVDMLNQK-ISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNAD  111 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-T--SEEEEECSCHHHHHHHHTT-CCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-C--CeEEEEecCHHHhhHHhcc-CCccccccHHHHHhhccCCeEEEcCHHHHHhCCC
Confidence            6899999999999999999998 8  9999999999999999873 3333332221  0   235888999988999999


Q ss_pred             EEEEcCccc-----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH
Q 012720          202 YCLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE  270 (458)
Q Consensus       202 iVilaVp~~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e  270 (458)
                      +||+|||+.           +++++++++.+ ++++++||..+ ++.+++.+.+.+.+.+.        .+.+.|.+..+
T Consensus       112 vViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S-Tv~pgtt~~l~~~l~~~--------~v~~sPe~~~~  181 (432)
T 3pid_A          112 YVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS-TIPVGFTRDIKERLGID--------NVIFSPEFLRE  181 (432)
T ss_dssp             EEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS-CCCTTHHHHHHHHHTCC--------CEEECCCCCCT
T ss_pred             EEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC-CCChHHHHHHHHHHhhc--------cEeecCccCCc
Confidence            999999975           58888899988 89999999877 78888766655544321        23457776543


Q ss_pred             Hh----ccCCeEEEEccCCHHHHHHHHHHHhc--C--CCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH
Q 012720          271 LM----NKLPTAMVVASKDRKLANAVQQLLAS--K--HLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAAL  342 (458)
Q Consensus       271 i~----~g~~t~v~i~g~d~e~~e~l~~lL~~--~--g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al  342 (458)
                      ..    .-.+..+++++ +++.++++.++|..  .  +.++.. .++..+++.                 |+.+|.+.++
T Consensus       182 G~A~~~~l~p~rIvvG~-~~~~~~~~~~ll~~~~~~~~~~v~~-~~~~~AE~~-----------------Kl~~N~~~a~  242 (432)
T 3pid_A          182 GRALYDNLHPSRIVIGE-RSARAERFADLLKEGAIKQDIPTLF-TDSTEAEAI-----------------KLFANTYLAL  242 (432)
T ss_dssp             TSHHHHHHSCSCEEESS-CSHHHHHHHHHHHHHCSSSSCCEEE-CCHHHHHHH-----------------HHHHHHHHHH
T ss_pred             chhhhcccCCceEEecC-CHHHHHHHHHHHHhhhccCCCeEEe-cCccHHHHH-----------------HHHHHHHHHH
Confidence            21    12233444454 56778999999975  2  234444 455544444                 4556677788


Q ss_pred             HHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHH
Q 012720          343 VAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQ  422 (458)
Q Consensus       343 ~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~  422 (458)
                      ....++|+..+|+++|+|++++++..+.-..+    +...-  .+|.-+ -|.++.             ||..+++.  +
T Consensus       243 ~Ia~~nEl~~lae~~GiD~~~v~~~~~~dpri----g~~~~--~pg~G~-GG~C~p-------------kD~~~L~~--~  300 (432)
T 3pid_A          243 RVAYFNELDSYAESQGLNSKQIIEGVCLDPRI----GNHYN--NPSFGY-GGYCLP-------------KDTKQLLA--N  300 (432)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTT----CSSSC--CCCSCC-CTTTHH-------------HHHHHHHH--H
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHccCCCC----CcccC--CCCCCC-cccchh-------------hhHHHHHH--H
Confidence            89999999999999999998887643221111    00000  011111 134432             66666653  3


Q ss_pred             HcCCCCcHHHHHHHHHhcCCCHHHHHHHHhc
Q 012720          423 KYNVKMPVLTAVARIIDNELTPKKAVLELMS  453 (458)
Q Consensus       423 ~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~  453 (458)
                      ..|++.++++++.++  +...++-+++++..
T Consensus       301 ~~~~~~~li~~~~~~--N~~~~~~v~~~i~~  329 (432)
T 3pid_A          301 YESVPNNIIAAIVDA--NRTRKDFIADSILA  329 (432)
T ss_dssp             TTTSCCSHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHH--HHhhHHHHHHHHHh
Confidence            468999999998887  55566666666543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.85  E-value=5.8e-21  Score=196.86  Aligned_cols=269  Identities=17%  Similarity=0.166  Sum_probs=183.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCceEEeCCHHhhcCCCCE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY  202 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-----l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |||+|||+|+||..+|..|++ |  ++|++|+|++++++.+++.+... +.++..     .+.++.++++++++++++|+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G--~~V~~~d~~~~~~~~l~~~~~~i-~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDv   76 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-Q--NEVTIVDILPSKVDKINNGLSPI-QDEYIEYYLKSKQLSIKATLDSKAAYKEAEL   76 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T--SEEEEECSCHHHHHHHHTTCCSS-CCHHHHHHHHHSCCCEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-C--CEEEEEECCHHHHHHHHcCCCCc-CCCCHHHHHHhccCcEEEeCCHHHHhcCCCE
Confidence            689999999999999999999 8  99999999999999998765321 111100     02246778888788889999


Q ss_pred             EEEcCccc-----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012720          203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL  271 (458)
Q Consensus       203 VilaVp~~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei  271 (458)
                      ||+|||+.           +++++++++.+ ++++++||..+ ++.+++.+.    +.+.++..    .++++|.+..+.
T Consensus        77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~S-T~~~g~~~~----l~~~~~~~----~v~~~Pe~~~~G  146 (402)
T 1dlj_A           77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKS-TIPIGFITE----MRQKFQTD----RIIFSPEFLRES  146 (402)
T ss_dssp             EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECS-CCCTTHHHH----HHHHTTCS----CEEECCCCCCTT
T ss_pred             EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeC-CCCccHHHH----HHHHhCCC----eEEECCccccCc
Confidence            99999986           59999999988 88899988744 355544333    33444431    356777655421


Q ss_pred             h----ccCCeEEEEccCCH------HHHHHHHHHHhcCCCe---EEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcH
Q 012720          272 M----NKLPTAMVVASKDR------KLANAVQQLLASKHLR---ISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNS  338 (458)
Q Consensus       272 ~----~g~~t~v~i~g~d~------e~~e~l~~lL~~~g~~---v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~  338 (458)
                      .    ...+..+++++.+.      +.++.+.++|...+++   +.+..|+...+|.|++.|.+                
T Consensus       147 ~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~----------------  210 (402)
T 1dlj_A          147 KALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTY----------------  210 (402)
T ss_dssp             STTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHH----------------
T ss_pred             chhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHH----------------
Confidence            1    11233355666441      6678899999765543   46677899999999887753                


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhhhHHHHHH
Q 012720          339 MAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVI  418 (458)
Q Consensus       339 ~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~  418 (458)
                       .++....++|+..+|+++|++.+.+.+..+....+    .  .+.+.+|.  +-|-.+  +          .||.++++
T Consensus       211 -~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~ri----~--~~~~~pg~--g~gg~c--~----------~kD~~~l~  269 (402)
T 1dlj_A          211 -LALRVAYFNELDTYAESRKLNSHMIIQGISYDDRI----G--MHYNNPSF--GYGGYS--L----------PKDTKQLL  269 (402)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTT----C--SSSCCCCS--SCCSSH--H----------HHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCC----C--cCCCCCCC--ccCCcc--H----------HhhHHHHH
Confidence             45567789999999999999998887643222111    0  00011111  111112  1          38889999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHH
Q 012720          419 ALAQKYNVKMPVLTAVARIIDNELTPKKAVLEL  451 (458)
Q Consensus       419 ~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l  451 (458)
                      ..|+  |+++|+++++.++  +...+.-+++++
T Consensus       270 ~~a~--~~~~~l~~~~~~~--N~~~~~~~~~~~  298 (402)
T 1dlj_A          270 ANYN--NIPQTLIEAIVSS--NNVRKSYIAKQI  298 (402)
T ss_dssp             HHHT--TSSCSHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HHhc--CCChHHHHHHHHH--HHHhHHHHHHHH
Confidence            8885  9999999998887  344455444444

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.82  E-value=1.1e-18  Score=180.48  Aligned_cols=279  Identities=18%  Similarity=0.194  Sum_probs=197.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-------CCCceEEeCCHHhhcCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-------LPENVIATTDAKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-------l~~~i~a~~~~~ea~~~  199 (458)
                      |.+|+|||+|.||..+|..|++.|  |+|+.+|.++++++.|++ |..+.+.++..       -..+++++++.++++++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G--~~V~g~Did~~kV~~ln~-G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~   97 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLG--HRVVGYDVNPSIVERLRA-GRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAA   97 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHHHHHHHT-TCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHT
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHC-CCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhc
Confidence            679999999999999999999999  999999999999999987 54555555532       13467889999999999


Q ss_pred             CCEEEEcCccc----------cHHHHHHhhhhcCC---CCCeEEEeccCCCcchhhhHH-HHHHHHhCCCCCCEEEEECc
Q 012720          200 ADYCLHAMPVQ----------FSSSFLEGISDYVD---PGLPFISLSKGLELNTLRMMS-QIIPQALRNPRQPFIALSGP  265 (458)
Q Consensus       200 aDiVilaVp~~----------~v~~vl~~i~~~l~---~~~ivV~~snGi~~~t~~~l~-e~l~~~lg~~~~~~~vl~gP  265 (458)
                      +|++|+|||+.          ++.++.+.|.++++   ++++||.-| ++.+.+.+.+. ..+.+..+.  ..+.+.+.|
T Consensus        98 ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eS-TVppGtte~~~~~~l~~~~~~--~~f~v~~~P  174 (444)
T 3vtf_A           98 TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKS-TVPPGTTEGLVARAVAEEAGG--VKFSVASNP  174 (444)
T ss_dssp             SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECS-CCCTTTTTTHHHHHHHTTTTT--CCCEEEECC
T ss_pred             CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeC-CCCCchHHHHHHHHHHHhCCC--CCceeecCc
Confidence            99999999852          47778888887775   467777666 78888766554 344443332  456788888


Q ss_pred             ccHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 012720          266 SFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAA  341 (458)
Q Consensus       266 ~~a~ei~----~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~a  341 (458)
                      .+..+..    ...+..+++|+.++...+.+.++++.....+.. .++..+|..|+                 ..|.+.+
T Consensus       175 Erl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~-~~~~~AE~~Kl-----------------~eN~~ra  236 (444)
T 3vtf_A          175 EFLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLV-MKPREAELVKY-----------------ASNVFLA  236 (444)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEE-ECHHHHHHHHH-----------------HHHHHHH
T ss_pred             ccccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEE-echhHHHHHHH-----------------HHHHHHH
Confidence            8765321    123445677888888888999999876655544 45666666554                 4456677


Q ss_pred             HHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHH
Q 012720          342 LVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIAL  420 (458)
Q Consensus       342 l~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~l  420 (458)
                      +....++|+..+|+++|+|...+.+..+.-..+       ..++ .+|.-+ -|.++             .||..+++..
T Consensus       237 vnIa~~NEla~ice~~GiDv~eV~~a~~~d~ri-------g~~~l~PG~G~-GG~Ci-------------pkD~~~L~~~  295 (444)
T 3vtf_A          237 LKISFANEVGLLAKRLGVDTYRVFEAVGLDKRI-------GRHYFGAGLGF-GGSCF-------------PKDTLAFIRF  295 (444)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTS-------CSTTCCCSSCC-CTTTH-------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCC-------CCCCCCCCCCC-CCccc-------------CcCHHHHHHH
Confidence            888999999999999999977766532210000       0110 112111 13443             2788999999


Q ss_pred             HHHcCCCCcHHHHHHHHHhcCCCHHHHHHHHh
Q 012720          421 AQKYNVKMPVLTAVARIIDNELTPKKAVLELM  452 (458)
Q Consensus       421 A~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~  452 (458)
                      |+++|+++++.+++.++  +...++-+++.+.
T Consensus       296 a~~~g~~~~li~a~~~i--N~~~~~~vv~~l~  325 (444)
T 3vtf_A          296 GESLGLEMAISKAVLRV--NEYMPRYAVQLLE  325 (444)
T ss_dssp             HHHTTCCCHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHhhHHH--HHHHHHHHHHHHH
Confidence            99999999999988776  3344555555543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.81  E-value=7.3e-19  Score=175.88  Aligned_cols=268  Identities=13%  Similarity=0.127  Sum_probs=164.5

Q ss_pred             ccccch-hhcCCCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012720          117 SKAKTD-ILERTNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATT  191 (458)
Q Consensus       117 ~~~~~~-~~~~~~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~  191 (458)
                      -++|++ .|+.+|||+|||+|+||.+||..|+++|.  .++|++|+|+++  +++.+++.|              +.+++
T Consensus        11 ~~~~~~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G--------------~~~~~   76 (322)
T 2izz_A           11 VDLGTENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG--------------VKLTP   76 (322)
T ss_dssp             -----------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT--------------CEEES
T ss_pred             cccCCchhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC--------------CEEeC
Confidence            345544 66667899999999999999999999872  268999999985  777887654              34566


Q ss_pred             CHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHH
Q 012720          192 DAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALEL  271 (458)
Q Consensus       192 ~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei  271 (458)
                      ++.++++++|+||+|||++++++++.++.+.++++++||++++|+..+   .+.+.+.+.++.   ...+...|..+.++
T Consensus        77 ~~~e~~~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~---~l~~~l~~~~~~---~~vv~~~p~~p~~~  150 (322)
T 2izz_A           77 HNKETVQHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTIS---SIEKKLSAFRPA---PRVIRCMTNTPVVV  150 (322)
T ss_dssp             CHHHHHHHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHH---HHHHHHHTTSSC---CEEEEEECCGGGGG
T ss_pred             ChHHHhccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHH---HHHHHHhhcCCC---CeEEEEeCCcHHHH
Confidence            788888899999999999999999999999998899999999998753   344455443332   12344556666555


Q ss_pred             hccCCeEEEEccC--CHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012720          272 MNKLPTAMVVASK--DRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE  349 (458)
Q Consensus       272 ~~g~~t~v~i~g~--d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E  349 (458)
                      ..+.  .++.++.  +++.++.++++|+..|+.++..+|......         ...|       ..+.+...+..++.|
T Consensus       151 ~~g~--~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~---------a~~g-------~gpa~~~~~~eala~  212 (322)
T 2izz_A          151 REGA--TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVT---------GLSG-------SGPAYAFTALDALAD  212 (322)
T ss_dssp             TCEE--EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHH---------HHTT-------THHHHHHHHHHHHHH
T ss_pred             cCCe--EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHH---------HHhc-------CHHHHHHHHHHHHHH
Confidence            4442  3333332  378889999999999988877666532111         1111       112233334444444


Q ss_pred             HHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHh-hCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCC
Q 012720          350 IRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRL-GSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKM  428 (458)
Q Consensus       350 ~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l-~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~  428 (458)
                      +   +.+.|++++.+.++..  +.+   .+       ....+ ..|+....+.....  .-+ ......++..++.|++.
T Consensus       213 a---~~~~Gl~~~~a~~l~~--~~~---~g-------~~~~~~~~~~~p~~l~~~v~--sp~-g~t~~~l~~l~~~g~~~  274 (322)
T 2izz_A          213 G---GVKMGLPRRLAVRLGA--QAL---LG-------AAKMLLHSEQHPGQLKDNVS--SPG-GATIHALHVLESGGFRS  274 (322)
T ss_dssp             H---HHHTTCCHHHHHHHHH--HHH---HH-------HHHHHHHCSSCHHHHHHHHC--CTT-SHHHHHHHHHHHTTHHH
T ss_pred             H---HHHcCCCHHHHHHHHH--HHH---HH-------HHHHHHhcCCCHHHHHHhCC--CCC-cHHHHHHHHHHHCCHHH
Confidence            4   6788999877665310  000   00       00011 11222111110000  000 12335567778889999


Q ss_pred             cHHHHHHHHHhc
Q 012720          429 PVLTAVARIIDN  440 (458)
Q Consensus       429 P~~~~v~~ll~~  440 (458)
                      ++.+.+.+.+..
T Consensus       275 ~~~~av~~~~~r  286 (322)
T 2izz_A          275 LLINAVEASCIR  286 (322)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998888877654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.80  E-value=4.9e-19  Score=172.87  Aligned_cols=215  Identities=14%  Similarity=0.155  Sum_probs=156.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.||.++|..|.++|  ++|++|+|++++++.+.+.|..            ...+++++++ +++|+||+||
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~-~~~D~vi~av   65 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQLV------------DEAGQDLSLL-QTAKIIFLCT   65 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGG-TTCSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHhCCCC------------ccccCCHHHh-CCCCEEEEEC
Confidence            68999999999999999999999  8999999999988888765431            1345678887 8999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE-----ECcccHH-HHhccCCeEEEE
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-----SGPSFAL-ELMNKLPTAMVV  281 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl-----~gP~~a~-ei~~g~~t~v~i  281 (458)
                      |.+.+.++++++.+.++++++|++++ ++.....+    .+.+.+. ...+...+     .||.++. ++..+.++.+..
T Consensus        66 ~~~~~~~~~~~l~~~~~~~~~vv~~~-~~~~~~~~----~~~~~~~-~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~  139 (279)
T 2f1k_A           66 PIQLILPTLEKLIPHLSPTAIVTDVA-SVKTAIAE----PASQLWS-GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP  139 (279)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEECC-SCCHHHHH----HHHHHST-TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEECC-CCcHHHHH----HHHHHhC-CEeecCcccCCccCCHHHHhHHHhCCCcEEEec
Confidence            99999999999999999999999985 44432222    2223222 12222222     2455443 233454444443


Q ss_pred             c-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHH-HHHHHHHHhcccCCC-----cHHHHHHHHHHHHHHHHH
Q 012720          282 A-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNV-LAIAAGIVVGMNLGN-----NSMAALVAQGCSEIRWLA  354 (458)
Q Consensus       282 ~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi-~ai~~G~~~~~kl~~-----n~~~al~~~~l~E~~~la  354 (458)
                      . +.+++..+.++++|+..|++++..++....+|.++++|. ..++.++..+.....     +....+..+++.|+.+++
T Consensus       140 ~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~  219 (279)
T 2f1k_A          140 TEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVG  219 (279)
T ss_dssp             CTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGG
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcccchhccc
Confidence            3 347889999999999999999999999999999999996 555566665554333     456688888999988776


Q ss_pred             HHcCCCcccccc
Q 012720          355 TKMGAKPATITG  366 (458)
Q Consensus       355 ~a~Gi~~~~~~~  366 (458)
                         +.+|+.+.+
T Consensus       220 ---~~~p~~~~~  228 (279)
T 2f1k_A          220 ---GGNPELGTM  228 (279)
T ss_dssp             ---GSCHHHHHH
T ss_pred             ---CCCHHHHHH
Confidence               356665543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.77  E-value=1.6e-18  Score=166.78  Aligned_cols=164  Identities=19%  Similarity=0.212  Sum_probs=118.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH--------------HHHHHhhcCCCccCCCCCCCCceEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV--------------CQSINEKHCNCRYFPEQKLPENVIATTD  192 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~--------------~e~l~~~g~~~~~~~~~~l~~~i~a~~~  192 (458)
                      .|||+|||+|+||.+||..|+++|  ++|++|+|++++              .+.+.+..            ..+ .+.+
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~   83 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLG--HEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH------------PHV-HLAA   83 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHTCC-------CCHHHHGGGS------------TTC-EEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc------------Cce-eccC
Confidence            689999999999999999999999  999999999986              33333221            012 3357


Q ss_pred             HHhhcCCCCEEEEcCccccHHHHHHhh-hhcCCCCCeEEEeccCC----------CcchhhhHHHHHHHHhCCCCCCEEE
Q 012720          193 AKTALLGADYCLHAMPVQFSSSFLEGI-SDYVDPGLPFISLSKGL----------ELNTLRMMSQIIPQALRNPRQPFIA  261 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp~~~v~~vl~~i-~~~l~~~~ivV~~snGi----------~~~t~~~l~e~l~~~lg~~~~~~~v  261 (458)
                      ++++++++|+||+|||.+...+++.++ .+.+ ++++||+++||+          .+++...+++.+++.++..    .+
T Consensus        84 ~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~----~v  158 (245)
T 3dtt_A           84 FADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEA----KV  158 (245)
T ss_dssp             HHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTS----EE
T ss_pred             HHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCC----eE
Confidence            778889999999999999988888888 6766 799999999764          4444556778888876531    12


Q ss_pred             EE------CcccHHHHh-ccCCeEEEEccCCHHHHHHHHHHHhcCCCe-EEEcCChH
Q 012720          262 LS------GPSFALELM-NKLPTAMVVASKDRKLANAVQQLLASKHLR-ISTSSDVT  310 (458)
Q Consensus       262 l~------gP~~a~ei~-~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~-v~~~~di~  310 (458)
                      +.      +|....... .+....+++++.+++.+++++++|+..|+. +.+.+++.
T Consensus       159 v~~~~~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g  215 (245)
T 3dtt_A          159 VKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDIT  215 (245)
T ss_dssp             EECSTTSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGG
T ss_pred             EEeecccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHH
Confidence            22      222221111 112233456677899999999999999985 56666653

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.75  E-value=8.5e-18  Score=157.93  Aligned_cols=169  Identities=15%  Similarity=0.205  Sum_probs=129.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|+||+++|..|+++|  ++|++|+|+++                                +++++|+||+|
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g--~~V~~~~~~~~--------------------------------~~~~aD~vi~a   64 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAG--HEVTYYGSKDQ--------------------------------ATTLGEIVIMA   64 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCC--------------------------------CSSCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH--------------------------------HhccCCEEEEc
Confidence            689999999999999999999999  99999998753                                35689999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCC-cc-------hhhhHHHHHHHHhCCCCCCEEEEE------CcccHHHHh
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLE-LN-------TLRMMSQIIPQALRNPRQPFIALS------GPSFALELM  272 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~-~~-------t~~~l~e~l~~~lg~~~~~~~vl~------gP~~a~ei~  272 (458)
                      +|.++++++++++.+.++ +++||++++|+. ++       +...+.+.+.+.++.    ..++.      +|.++.+..
T Consensus        65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~----~~vv~~~~~~~~p~~~~~~~  139 (209)
T 2raf_A           65 VPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPD----SQVLKAFNTTFAATLQSGQV  139 (209)
T ss_dssp             SCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTT----SEEEECSTTSCHHHHHHSEE
T ss_pred             CCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCC----CcEEEeeecccHhhcccccc
Confidence            999899999999988888 999999999997 33       333456677776652    12333      676665443


Q ss_pred             cc-CCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 012720          273 NK-LPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN  337 (458)
Q Consensus       273 ~g-~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n  337 (458)
                      .+ ....+.+++.+++..+.++++|+..|++++..+++..   +.++||+.++..++..+.+++.|
T Consensus       140 ~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~~~i~~---a~~~K~i~~l~~~~~~~~g~g~~  202 (209)
T 2raf_A          140 NGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKDAGKLKR---ARELEAMGFMQMTLAASEQIGWT  202 (209)
T ss_dssp             TTTEECEEEEEESCHHHHHHHHHHTTTSSCEEEEEESGGG---HHHHHHHHHHHHHHHHTTSSCTT
T ss_pred             CCCCCceeEEcCCCHHHHHHHHHHHHHcCCceEeCCCHhH---HHHhcchHHHHHHHHHHcCCCch
Confidence            33 2334456666778999999999999999999888654   44566777777777766666544

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.74  E-value=2e-17  Score=159.82  Aligned_cols=250  Identities=14%  Similarity=0.197  Sum_probs=157.5

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|||+|+||..+|..|+++|. ++|++|+|++++++.+.+. |              +..+.++++++ ++|+||+|
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~~~~g--------------~~~~~~~~~~~-~~D~vi~~   64 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRERLEKELG--------------VETSATLPELH-SDDVLILA   64 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHHHHHHTC--------------CEEESSCCCCC-TTSEEEEC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCC-CeEEEECCCHHHHHHHHHhcC--------------CEEeCCHHHHh-cCCEEEEE
Confidence            689999999999999999998873 6999999999998888764 3              34556677778 99999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC--
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK--  284 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~--  284 (458)
                      ||...+++++.++.+  + +++||++++|+.++       .+.+.++.. ..+. ...|+++.....|..  .+..+.  
T Consensus        65 v~~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~-------~l~~~~~~~-~~~v-~~~~~~~~~~~~g~~--~i~~~~~~  130 (263)
T 1yqg_A           65 VKPQDMEAACKNIRT--N-GALVLSVAAGLSVG-------TLSRYLGGT-RRIV-RVMPNTPGKIGLGVS--GMYAEAEV  130 (263)
T ss_dssp             SCHHHHHHHHTTCCC--T-TCEEEECCTTCCHH-------HHHHHTTSC-CCEE-EEECCGGGGGTCEEE--EEECCTTS
T ss_pred             eCchhHHHHHHHhcc--C-CCEEEEecCCCCHH-------HHHHHcCCC-CcEE-EEcCCHHHHHcCceE--EEEcCCCC
Confidence            998889999988766  5 88999998898862       344444431 1121 224655555444432  233444  


Q ss_pred             CHHHHHHHHHHHhcCCCeEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccc
Q 012720          285 DRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPAT  363 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~~~-~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~  363 (458)
                      +++..+.++++|+..|+.++.. +|.        +..+.++ .|..       +.....+..++.|+   +++.|+++++
T Consensus       131 ~~~~~~~~~~l~~~~g~~~~~~~~~~--------~~~~~al-~g~~-------~~~~~~~~~~l~e~---~~~~G~~~~~  191 (263)
T 1yqg_A          131 SETDRRIADRIMKSVGLTVWLDDEEK--------MHGITGI-SGSG-------PAYVFYLLDALQNA---AIRQGFDMAE  191 (263)
T ss_dssp             CHHHHHHHHHHHHTTEEEEECSSTTH--------HHHHHHH-TTSH-------HHHHHHHHHHHHHH---HHHTTCCHHH
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCChhh--------ccHHHHH-HccH-------HHHHHHHHHHHHHH---HHHcCCCHHH
Confidence            7888999999999999887555 431        1122221 1111       12234445555565   8889999877


Q ss_pred             cccccCCcchhhhhccCCCccchHHHHhh-CCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcC
Q 012720          364 ITGLSGTGDIMLTCFVNLSRNRTVGVRLG-SGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNE  441 (458)
Q Consensus       364 ~~~~~g~gd~~~t~~~~~srn~~~g~~l~-~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~  441 (458)
                      +.++..  ..+   ..       ....+. .|.+.+.+.+..  ...+ ..+...++..++.|++.|+.+.+++.+...
T Consensus       192 ~~~~~~--~~~---~~-------~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~l~~~~~~~~~~~a~~~~~~~~  255 (263)
T 1yqg_A          192 ARALSL--ATF---KG-------AVALAEQTGEDFEKLQKNV--TSKG-GTTHEAVEAFRRHRVAEAISEGVCACVRRS  255 (263)
T ss_dssp             HHHHHH--HHH---HH-------HHHHHHHHCCCHHHHHHHT--CCTT-SHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHH---HH-------HHHHHHhcCCCHHHHHHhc--CCCC-hhHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            665310  000   00       000111 121121111110  0111 223444555688999999999999988653

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.74  E-value=3.6e-17  Score=160.48  Aligned_cols=197  Identities=20%  Similarity=0.251  Sum_probs=138.4

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~---~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .+|||+|||+|+||.+++..|.++|  +   +|++|+|++++++.+.+..             ++..+++..++++++|+
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g--~~~~~V~v~dr~~~~~~~l~~~~-------------gi~~~~~~~~~~~~aDv   66 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANG--YDPNRICVTNRSLDKLDFFKEKC-------------GVHTTQDNRQGALNADV   66 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTT--CCGGGEEEECSSSHHHHHHHHTT-------------CCEEESCHHHHHSSCSE
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCC--CCCCeEEEEeCCHHHHHHHHHHc-------------CCEEeCChHHHHhcCCe
Confidence            3589999999999999999999999  7   9999999999998887641             24566788888999999


Q ss_pred             EEEcCccccHHHHHHhhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEE
Q 012720          203 CLHAMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVV  281 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~-l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i  281 (458)
                      ||+|||.+.+.++++++.++ ++++++||++++|+..+       .+.+.++.. .. .+...|+.+..++.|.  ..+.
T Consensus        67 Vilav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~-------~l~~~l~~~-~~-vvr~mPn~p~~v~~g~--~~l~  135 (280)
T 3tri_A           67 VVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTP-------LIEKWLGKA-SR-IVRAMPNTPSSVRAGA--TGLF  135 (280)
T ss_dssp             EEECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHH-------HHHHHHTCC-SS-EEEEECCGGGGGTCEE--EEEE
T ss_pred             EEEEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHH-------HHHHHcCCC-Ce-EEEEecCChHHhcCcc--EEEE
Confidence            99999999999999999988 88888999999998753       344545432 12 3444577766554432  2223


Q ss_pred             cc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 012720          282 AS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGA  359 (458)
Q Consensus       282 ~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi  359 (458)
                      .+  .+++..+.++++|+..|..+...++-.   .     +.....+|       ..+.+..++..++.|+   +.+.|+
T Consensus       136 ~~~~~~~~~~~~v~~l~~~iG~~~~v~~E~~---~-----d~~talsg-------sgpa~~~~~~eal~~a---~v~~Gl  197 (280)
T 3tri_A          136 ANETVDKDQKNLAESIMRAVGLVIWVSSEDQ---I-----EKIAALSG-------SGPAYIFLIMEALQEA---AEQLGL  197 (280)
T ss_dssp             CCTTSCHHHHHHHHHHHGGGEEEEECSSHHH---H-----HHHHHHTT-------SHHHHHHHHHHHHHHH---HHHTTC
T ss_pred             eCCCCCHHHHHHHHHHHHHCCCeEEECCHHH---h-----hHHHHHhc-------cHHHHHHHHHHHHHHH---HHHcCC
Confidence            33  357889999999999997554422211   0     11111011       1133445555666555   557888


Q ss_pred             Ccccccc
Q 012720          360 KPATITG  366 (458)
Q Consensus       360 ~~~~~~~  366 (458)
                      +++...+
T Consensus       198 ~~~~a~~  204 (280)
T 3tri_A          198 TKETAEL  204 (280)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            8776654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.74  E-value=1.6e-16  Score=152.72  Aligned_cols=156  Identities=16%  Similarity=0.196  Sum_probs=116.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC----eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL----KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~----~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      +|||+|||+|+||.+||..|.++|  +    +|++|+|++++++.+.+..             ++..+++.+++++++|+
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g--~~~~~~V~~~~r~~~~~~~~~~~~-------------g~~~~~~~~e~~~~aDv   66 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKN--IVSSNQIICSDLNTANLKNASEKY-------------GLTTTTDNNEVAKNADI   66 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT--SSCGGGEEEECSCHHHHHHHHHHH-------------CCEECSCHHHHHHHCSE
T ss_pred             CCeEEEECccHHHHHHHHHHHhCC--CCCCCeEEEEeCCHHHHHHHHHHh-------------CCEEeCChHHHHHhCCE
Confidence            479999999999999999999999  8    9999999999988887531             13466788888899999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      ||+|||.+.++++++++.+.++++++||++++|+..+       .+++.++..  ...+..-|+.+.....|. +.+..+
T Consensus        67 Vilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~-------~l~~~~~~~--~~~v~~~p~~p~~~~~g~-~~~~~~  136 (247)
T 3gt0_A           67 LILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIE-------STENAFNKK--VKVVRVMPNTPALVGEGM-SALCPN  136 (247)
T ss_dssp             EEECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHH-------HHHHHHCSC--CEEEEEECCGGGGGTCEE-EEEEEC
T ss_pred             EEEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHH-------HHHHHhCCC--CcEEEEeCChHHHHcCce-EEEEeC
Confidence            9999999999999999999999999999999898753       344444431  122334466555444432 222222


Q ss_pred             -cCCHHHHHHHHHHHhcCCCeEEEcC
Q 012720          283 -SKDRKLANAVQQLLASKHLRISTSS  307 (458)
Q Consensus       283 -g~d~e~~e~l~~lL~~~g~~v~~~~  307 (458)
                       +.+++.++.++++|+..|..+...+
T Consensus       137 ~~~~~~~~~~~~~l~~~~G~~~~~~e  162 (247)
T 3gt0_A          137 EMVTEKDLEDVLNIFNSFGQTEIVSE  162 (247)
T ss_dssp             TTCCHHHHHHHHHHHGGGEEEEECCG
T ss_pred             CCCCHHHHHHHHHHHHhCCCEEEeCH
Confidence             3578899999999999997555443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.72  E-value=1.1e-16  Score=151.39  Aligned_cols=171  Identities=13%  Similarity=0.227  Sum_probs=126.6

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      .+|.||||+|||+|+||.++|..|+++|  ++|++ |+|++++++.+.+. +.              ..+.+..++++++
T Consensus        19 ~~m~mmkI~IIG~G~mG~~la~~l~~~g--~~V~~v~~r~~~~~~~l~~~~g~--------------~~~~~~~~~~~~a   82 (220)
T 4huj_A           19 YFQSMTTYAIIGAGAIGSALAERFTAAQ--IPAIIANSRGPASLSSVTDRFGA--------------SVKAVELKDALQA   82 (220)
T ss_dssp             TGGGSCCEEEEECHHHHHHHHHHHHHTT--CCEEEECTTCGGGGHHHHHHHTT--------------TEEECCHHHHTTS
T ss_pred             hhhcCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCCHHHHHHHHHHhCC--------------CcccChHHHHhcC
Confidence            3345789999999999999999999999  99999 99999988887654 21              1222334557899


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC-----cc--hhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhc
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE-----LN--TLRMMSQIIPQALRNPRQPFIALSGPSFALELMN  273 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~-----~~--t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~  273 (458)
                      |+||+|||.+.+.+++.++.+ + ++++||++++|+.     .+  +.....+.+.+.++..   -.+..-|.....+..
T Consensus        83 DvVilavp~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~---~vv~~~~~~~~~v~~  157 (220)
T 4huj_A           83 DVVILAVPYDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGA---KVVKAFNTLPAAVLA  157 (220)
T ss_dssp             SEEEEESCGGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTC---EEEEESCSSCHHHHT
T ss_pred             CEEEEeCChHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCC---CEEECCCCCCHHHhh
Confidence            999999999999999999877 5 5889999999985     11  1223456677766531   223344444443332


Q ss_pred             ------cCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHH
Q 012720          274 ------KLPTAMVVASKDRKLANAVQQLLASKHLRISTSSDVTGVEI  314 (458)
Q Consensus       274 ------g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~  314 (458)
                            +.+..+++++.+++..+.++++|+..|++++..+++....|
T Consensus       158 ~g~~~~~~~~~v~~~g~~~~~~~~v~~l~~~~G~~~~~~G~l~~a~~  204 (220)
T 4huj_A          158 ADPDKGTGSRVLFLSGNHSDANRQVAELISSLGFAPVDLGTLAASGP  204 (220)
T ss_dssp             SCSBCSSCEEEEEEEESCHHHHHHHHHHHHHTTCEEEECCSHHHHHH
T ss_pred             hCcccCCCCeeEEEeCCCHHHHHHHHHHHHHhCCCeEeeCChhhcch
Confidence                  12345667778899999999999999999999988765443

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.70  E-value=4.2e-16  Score=150.48  Aligned_cols=151  Identities=15%  Similarity=0.162  Sum_probs=110.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC--CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +|||+|||+|+||++||..|+++|.  .++|++|+|++++      .|              +..+++++++++++|+||
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g--------------~~~~~~~~~~~~~~D~vi   63 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TT--------------LNYMSSNEELARHCDIIV   63 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SS--------------SEECSCHHHHHHHCSEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------Cc--------------eEEeCCHHHHHhcCCEEE
Confidence            5799999999999999999999871  1589999998754      12              345667888888999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-  283 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-  283 (458)
                      +|||.+.+++++.++.+.+ ++++||+.++|+.++       .+.+.++.. . -.+...|+++.....| .+.+..+. 
T Consensus        64 ~~v~~~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~-------~l~~~~~~~-~-~~v~~~p~~p~~~~~g-~~~~~~~~~  132 (262)
T 2rcy_A           64 CAVKPDIAGSVLNNIKPYL-SSKLLISICGGLNIG-------KLEEMVGSE-N-KIVWVMPNTPCLVGEG-SFIYCSNKN  132 (262)
T ss_dssp             ECSCTTTHHHHHHHSGGGC-TTCEEEECCSSCCHH-------HHHHHHCTT-S-EEEEEECCGGGGGTCE-EEEEEECTT
T ss_pred             EEeCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHH-------HHHHHhCCC-C-cEEEECCChHHHHcCC-eEEEEeCCC
Confidence            9999999999999999888 578899999999874       233444431 0 1234557776655555 33222222 


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720          284 KDRKLANAVQQLLASKHLRISTSSD  308 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~~d  308 (458)
                      .+++.++.++++|+..|..+...++
T Consensus       133 ~~~~~~~~~~~ll~~~G~~~~~~~~  157 (262)
T 2rcy_A          133 VNSTDKKYVNDIFNSCGIIHEIKEK  157 (262)
T ss_dssp             CCHHHHHHHHHHHHTSEEEEECCGG
T ss_pred             CCHHHHHHHHHHHHhCCCEEEeCHH
Confidence            3688899999999999973333333

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.70  E-value=6.4e-16  Score=149.71  Aligned_cols=195  Identities=13%  Similarity=0.062  Sum_probs=133.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~-V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||+|||+|.||..+|..|+++|  ++ |.+|+|++++++.+.+..             ++..+++++++++++|+||+
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g--~~~v~~~~~~~~~~~~~~~~~-------------g~~~~~~~~~~~~~~Dvvi~   74 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKG--FRIVQVYSRTEESARELAQKV-------------EAEYTTDLAEVNPYAKLYIV   74 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSHHHHHHHHHHT-------------TCEEESCGGGSCSCCSEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCEEEE
Confidence            479999999999999999999999  88 899999999888887641             13456688888899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHH-HhccCCeEEEEccC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALE-LMNKLPTAMVVASK  284 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~e-i~~g~~t~v~i~g~  284 (458)
                      |+|...+.++++++.+.++++++||++++|+..+.       +.+.++..  .......|..... ...+... +++.+.
T Consensus        75 av~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~-------l~~~~~~~--~~~~~~~~~~g~~~~~~~~~~-~~v~~~  144 (266)
T 3d1l_A           75 SLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNV-------WEGHVPHY--GVFYPMQTFSKQREVDFKEIP-FFIEAS  144 (266)
T ss_dssp             CCCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG-------STTTCSSE--EEEEECCCC---CCCCCTTCC-EEEEES
T ss_pred             ecCHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH-------HHHHHHhc--cCcCCceecCCCchhhcCCCe-EEEecC
Confidence            99998889999999888989999999999887542       22322210  1111122211100 0112222 334566


Q ss_pred             CHHHHHHHHHHHhcCCCeEEEcCChH---HHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCc
Q 012720          285 DRKLANAVQQLLASKHLRISTSSDVT---GVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKP  361 (458)
Q Consensus       285 d~e~~e~l~~lL~~~g~~v~~~~di~---~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~  361 (458)
                      +++.++.++++|+..|.+++..++..   ...+.++..|..                   .....+.|.  ++++.|+++
T Consensus       145 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~ea--l~~~~Gl~~  203 (266)
T 3d1l_A          145 STEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFT-------------------NHMYALAAE--LLKKYNLPF  203 (266)
T ss_dssp             SHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHH--HHHHTTCCG
T ss_pred             CHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHH--HHHHcCCCH
Confidence            88899999999999998888776542   223333222211                   112344453  668999998


Q ss_pred             cccccc
Q 012720          362 ATITGL  367 (458)
Q Consensus       362 ~~~~~~  367 (458)
                      +.+.++
T Consensus       204 ~~~~~l  209 (266)
T 3d1l_A          204 DVMLPL  209 (266)
T ss_dssp             GGGHHH
T ss_pred             HHHHHH
Confidence            876543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.69  E-value=2.6e-16  Score=153.78  Aligned_cols=175  Identities=13%  Similarity=0.127  Sum_probs=124.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiV  203 (458)
                      ||||+|||+|+||.++|..|+++|  +  +|++|+|++++++.+.+.|..            ...+++++++++ ++|+|
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g--~~~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~aDvV   66 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSG--FKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKVEDFSPDFV   66 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTT--CCSEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGGGGTCCSEE
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHCCCc------------ccccCCHHHHhcCCCCEE
Confidence            479999999999999999999998  7  999999999988887765531            123457777888 99999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEE-----CcccHH-HHhccCCe
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS-----GPSFAL-ELMNKLPT  277 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~-----gP~~a~-ei~~g~~t  277 (458)
                      |+|||.+.+.+++.++.+.++++++|++++++ .....+.+.+.+.+.    +.+...+.     ||.++. +...+.++
T Consensus        67 ilavp~~~~~~v~~~l~~~l~~~~iv~~~~~~-~~~~~~~l~~~l~~~----~v~~~p~~~~~~~gp~~a~~~l~~g~~~  141 (281)
T 2g5c_A           67 MLSSPVRTFREIAKKLSYILSEDATVTDQGSV-KGKLVYDLENILGKR----FVGGHPIAGTEKSGVEYSLDNLYEGKKV  141 (281)
T ss_dssp             EECSCHHHHHHHHHHHHHHSCTTCEEEECCSC-CTHHHHHHHHHHGGG----EECEEEECCCSCCSGGGCCSSTTTTCEE
T ss_pred             EEcCCHHHHHHHHHHHHhhCCCCcEEEECCCC-cHHHHHHHHHhcccc----ceeeccccCCccCChhhhhhHHhCCCCE
Confidence            99999999999999998889999998888743 333233344444321    12222222     444432 22344433


Q ss_pred             EEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHH
Q 012720          278 AMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKN  320 (458)
Q Consensus       278 ~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkN  320 (458)
                      .+... +.+++..+.++++|+..|++++..++.....|.++.-|
T Consensus       142 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~d~~~~~~~~  185 (281)
T 2g5c_A          142 ILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVVSH  185 (281)
T ss_dssp             EECCCSSSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHTH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHH
Confidence            22222 56788999999999999999888887666666655444

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.64  E-value=2.1e-15  Score=147.90  Aligned_cols=154  Identities=13%  Similarity=0.145  Sum_probs=113.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||||+|||+ |.||..+|..|+++|  ++|++|+|++++++.+.+.|..              .. +..++++++|+||+
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~g~~--------------~~-~~~~~~~~aDvVi~   73 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSA--HHLAAIEIAPEGRDRLQGMGIP--------------LT-DGDGWIDEADVVVL   73 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSS--SEEEEECCSHHHHHHHHHTTCC--------------CC-CSSGGGGTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHhcCCC--------------cC-CHHHHhcCCCEEEE
Confidence            479999999 999999999999999  9999999999988888764421              11 45567889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE-ECcccHHH--------HhccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL-SGPSFALE--------LMNKLP  276 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl-~gP~~a~e--------i~~g~~  276 (458)
                      |||...+.++++++.+.++++++||++++|...+.       +.+..+    ...++ ..|.++.+        ...|.+
T Consensus        74 av~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~-------l~~~~~----~~~~v~~~P~~~~~~~~~~~~~~~~g~l  142 (286)
T 3c24_A           74 ALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAG-------VMPERA----DITYFIGHPCHPPLFNDETDPAARTDYH  142 (286)
T ss_dssp             CSCHHHHHHHHHHHGGGSCTTCEEEESCSHHHHHT-------CSCCCT----TSEEEEEEECCSCSSCCCCSHHHHTCSS
T ss_pred             cCCchHHHHHHHHHHHhCCCCCEEEECCCCchhHH-------HHhhhC----CCeEEecCCCCccccccccchhhccCcc
Confidence            99998899999999999999999999988763221       112111    12233 55555432        445532


Q ss_pred             ------eEE-EEccCCHHHHHHHHHHHhcCCC---eEEEcCC
Q 012720          277 ------TAM-VVASKDRKLANAVQQLLASKHL---RISTSSD  308 (458)
Q Consensus       277 ------t~v-~i~g~d~e~~e~l~~lL~~~g~---~v~~~~d  308 (458)
                            ..+ ...+.+++..+.++++|+..|.   +++..+.
T Consensus       143 ~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~  184 (286)
T 3c24_A          143 GGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTT  184 (286)
T ss_dssp             SSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCH
T ss_pred             cccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeCh
Confidence                  222 2234678889999999999998   6766653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.63  E-value=9.5e-16  Score=150.40  Aligned_cols=167  Identities=17%  Similarity=0.167  Sum_probs=116.1

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ++|||+|||+|+||.++|..|+++|.+++|++|+|+++.++.+.+.|..            ...+++++++++++|+||+
T Consensus         5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~aDvVil   72 (290)
T 3b1f_A            5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIV------------DEATADFKVFAALADVIIL   72 (290)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSC------------SEEESCTTTTGGGCSEEEE
T ss_pred             ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCc------------ccccCCHHHhhcCCCEEEE
Confidence            4689999999999999999999984338999999999988888765431            0345577777889999999


Q ss_pred             cCccccHHHHHHhhhhc-CCCCCeEEEeccCCCcchhhhHHHHHHHHhCC-C--CCCEEEEE-----CcccHH-HHhccC
Q 012720          206 AMPVQFSSSFLEGISDY-VDPGLPFISLSKGLELNTLRMMSQIIPQALRN-P--RQPFIALS-----GPSFAL-ELMNKL  275 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~-l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~-~--~~~~~vl~-----gP~~a~-ei~~g~  275 (458)
                      |||.+.+.++++++.+. ++++++|++++++. ....    +.+.+.++. .  +.+...+.     ||..+. +...|.
T Consensus        73 avp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~-~~~~----~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~  147 (290)
T 3b1f_A           73 AVPIKKTIDFIKILADLDLKEDVIITDAGSTK-YEIV----RAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENA  147 (290)
T ss_dssp             CSCHHHHHHHHHHHHTSCCCTTCEEECCCSCH-HHHH----HHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTS
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCEEEECCCCc-hHHH----HHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCC
Confidence            99999999999999988 88999998877432 2111    334444332 1  11111111     444332 222344


Q ss_pred             CeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCCh
Q 012720          276 PTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDV  309 (458)
Q Consensus       276 ~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di  309 (458)
                      ...+... +.+++..+.++++|+..|++++..++.
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~  182 (290)
T 3b1f_A          148 YYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDAA  182 (290)
T ss_dssp             EEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCHH
T ss_pred             eEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHH
Confidence            3333332 356788899999999999998776643

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.63  E-value=1.9e-14  Score=143.46  Aligned_cols=167  Identities=13%  Similarity=0.140  Sum_probs=118.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiV  203 (458)
                      +|||+|||+|.||..||..|.++|  +  +|++|||+++.++.+.+.|..            ...++++++ +++++|+|
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G--~~~~V~~~dr~~~~~~~a~~~G~~------------~~~~~~~~~~~~~~aDvV   98 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSG--FKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKVEDFSPDFV   98 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTT--CCSEEEEECSCHHHHHHHHHTTSC------------SEEESCTTGGGGGCCSEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHCCCc------------chhcCCHHHHhhccCCEE
Confidence            479999999999999999999999  7  999999999988888776531            134567778 88999999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECc-----ccHH-HHhccCCe
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGP-----SFAL-ELMNKLPT  277 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP-----~~a~-ei~~g~~t  277 (458)
                      |+|||...+.++++++.+.++++++|++++ ++.....+.+.+.+.+    .+.+...+.|+     ..+. ++..|...
T Consensus        99 ilavp~~~~~~vl~~l~~~l~~~~iv~d~~-Svk~~~~~~~~~~l~~----~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~  173 (314)
T 3ggo_A           99 MLSSPVRTFREIAKKLSYILSEDATVTDQG-SVKGKLVYDLENILGK----RFVGGHPIAGTEKSGVEYSLDNLYEGKKV  173 (314)
T ss_dssp             EECSCGGGHHHHHHHHHHHSCTTCEEEECC-SCCTHHHHHHHHHHGG----GEECEEECCCCCCCSGGGCCTTTTTTCEE
T ss_pred             EEeCCHHHHHHHHHHHhhccCCCcEEEECC-CCcHHHHHHHHHhcCC----CEEecCcccCCcccchhhhhhhhhcCCEE
Confidence            999999999999999999999999999887 3433222223333322    11222334443     2222 12234433


Q ss_pred             EEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCChHHH
Q 012720          278 AMVVA-SKDRKLANAVQQLLASKHLRISTSSDVTGV  312 (458)
Q Consensus       278 ~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di~~~  312 (458)
                      .++.. +.+++.++.++++|+..|.+++..+.-..+
T Consensus       174 il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD  209 (314)
T 3ggo_A          174 ILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHD  209 (314)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHH
Confidence            22222 357899999999999999988776544333

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.62  E-value=9.5e-15  Score=143.27  Aligned_cols=202  Identities=14%  Similarity=0.121  Sum_probs=136.4

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------------cCCCccCCCCCCCCceEEe
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------------HCNCRYFPEQKLPENVIAT  190 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-------------g~~~~~~~~~~l~~~i~a~  190 (458)
                      ||.++||+|||+|.||..+|..|+++|  ++|++|||+++.++.+.+.             +.....  ......++..+
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~--~~~~~~~i~~~   76 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHG--FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGA--AQKALGGIRYS   76 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTH--HHHHHHHCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHH--HHHHHcCeEEe
Confidence            456789999999999999999999999  9999999999887776553             110000  00011235677


Q ss_pred             CCHHhhcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE-EEECccc
Q 012720          191 TDAKTALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI-ALSGPSF  267 (458)
Q Consensus       191 ~~~~ea~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~-vl~gP~~  267 (458)
                      ++++++++++|+||+|||..  ....++.++.+.+++++++++.+.++...   .    +.+.++.+...+. ....|..
T Consensus        77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~---~----la~~~~~~~~~ig~h~~~p~~  149 (283)
T 4e12_A           77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPS---D----LVGYTGRGDKFLALHFANHVW  149 (283)
T ss_dssp             SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---H----HHHHHSCGGGEEEEEECSSTT
T ss_pred             CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---H----HHhhcCCCcceEEEccCCCcc
Confidence            89988889999999999986  67888899999999999999888777542   2    2233322100111 1122321


Q ss_pred             HHHHhccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEc-CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Q 012720          268 ALELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTS-SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQ  345 (458)
Q Consensus       268 a~ei~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~-~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~  345 (458)
                           .+....++.+. .+++.++.+.++++..|...... .+..+                      +..   ..+...
T Consensus       150 -----~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g----------------------~i~---nr~~~~  199 (283)
T 4e12_A          150 -----VNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAG----------------------YVL---NSLLVP  199 (283)
T ss_dssp             -----TSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTT----------------------TTH---HHHHHH
T ss_pred             -----cCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCC----------------------EEe---hHHHHH
Confidence                 12222222222 36889999999999999887765 44322                      011   122335


Q ss_pred             HHHHHHHHHHHcCCCcccccc
Q 012720          346 GCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       346 ~l~E~~~la~a~Gi~~~~~~~  366 (458)
                      .++|+..+++..+++++++..
T Consensus       200 ~~~ea~~l~~~g~~~~~~id~  220 (283)
T 4e12_A          200 LLDAAAELLVDGIADPETIDK  220 (283)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHH
Confidence            789999999998899887654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.60  E-value=1e-13  Score=133.59  Aligned_cols=150  Identities=14%  Similarity=0.212  Sum_probs=109.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||+|||+|.||..++..|.+.|  ++|.+|+|++++++.+.+. |.              ..+++++++++++|+||+
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g--~~v~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~~~~~~D~Vi~   66 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSKEIAEQLAL--------------PYAMSHQDLIDQVDLVIL   66 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSS--CEEEEECSSHHHHHHHHHHHTC--------------CBCSSHHHHHHTCSEEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCC--CeEEEECCCHHHHHHHHHHcCC--------------EeeCCHHHHHhcCCEEEE
Confidence            689999999999999999999998  9999999999988888754 32              234578888889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC-
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK-  284 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~-  284 (458)
                      |+|...+.+++.++.    +++++|++++|+..++       +.+.++.. ..+ +...|+++.....|  ...++.+. 
T Consensus        67 ~v~~~~~~~v~~~l~----~~~~vv~~~~~~~~~~-------l~~~~~~~-~~~-v~~~p~~~~~~~~g--~~~i~~~~~  131 (259)
T 2ahr_A           67 GIKPQLFETVLKPLH----FKQPIISMAAGISLQR-------LATFVGQD-LPL-LRIMPNMNAQILQS--STALTGNAL  131 (259)
T ss_dssp             CSCGGGHHHHHTTSC----CCSCEEECCTTCCHHH-------HHHHHCTT-SCE-EEEECCGGGGGTCE--EEEEEECTT
T ss_pred             EeCcHhHHHHHHHhc----cCCEEEEeCCCCCHHH-------HHHhcCCC-CCE-EEEcCCchHHHcCc--eEEEEcCCC
Confidence            999888888876653    6889999988887642       33333321 112 22446665554444  22233343 


Q ss_pred             -CHHHHHHHHHHHhcCCCeEEEcCC
Q 012720          285 -DRKLANAVQQLLASKHLRISTSSD  308 (458)
Q Consensus       285 -d~e~~e~l~~lL~~~g~~v~~~~d  308 (458)
                       +++.++.++++|+..| .+...++
T Consensus       132 ~~~~~~~~~~~ll~~~G-~~~~~~~  155 (259)
T 2ahr_A          132 VSQELQARVRDLTDSFG-STFDISE  155 (259)
T ss_dssp             CCHHHHHHHHHHHHTTE-EEEECCG
T ss_pred             CCHHHHHHHHHHHHhCC-CEEEecH
Confidence             7889999999999998 4555443

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.59  E-value=3.4e-14  Score=132.64  Aligned_cols=179  Identities=14%  Similarity=0.169  Sum_probs=125.4

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+||| +|.||..++..|+++|  ++|++|+|++++.+.+.+. +.   ++.    +..+. .++.+++++++|+||+
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g--~~V~~~~r~~~~~~~~~~~~~~---~~~----~~~~~-~~~~~~~~~~~D~Vi~   70 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRREEKAEAKAAEYRR---IAG----DASIT-GMKNEDAAEACDIAVL   70 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSHHHHHHHHHHHHH---HHS----SCCEE-EEEHHHHHHHCSEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc---ccc----cCCCC-hhhHHHHHhcCCEEEE
Confidence            6899999 9999999999999999  9999999999888777653 21   111    01233 2467777889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchh-------hhHHHHHHHHhCCCCCCEEEEEC--cccHHHHhc--c
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL-------RMMSQIIPQALRNPRQPFIALSG--PSFALELMN--K  274 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~-------~~l~e~l~~~lg~~~~~~~vl~g--P~~a~ei~~--g  274 (458)
                      |+|...+.++++++.+.++ +++++++++|+.+++.       ....+.+.+.++.    ..++.+  |..+.....  .
T Consensus        71 ~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~~~~~~~~~  145 (212)
T 1jay_A           71 TIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPAARFANLDE  145 (212)
T ss_dssp             CSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCHHHHHCTTC
T ss_pred             eCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHHHHhhCcCC
Confidence            9999888999988877774 8999999999875310       1123445555542    123444  544443322  2


Q ss_pred             CCe-EEEEccCCHHHHHHHHHHHhcC-CCeEEEcCChHHHHHHHHHHHH
Q 012720          275 LPT-AMVVASKDRKLANAVQQLLASK-HLRISTSSDVTGVEIAGALKNV  321 (458)
Q Consensus       275 ~~t-~v~i~g~d~e~~e~l~~lL~~~-g~~v~~~~di~~~~~~kalkNi  321 (458)
                      ... .+++++.+++..+.++++|+.. |..+...+++....|.|.+-|.
T Consensus       146 ~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~  194 (212)
T 1jay_A          146 KFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPL  194 (212)
T ss_dssp             CCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHH
T ss_pred             CCCccEEEECCcHHHHHHHHHHHHHcCCCCceeccchhHHHHhcchHHH
Confidence            222 2334444688999999999999 9988777777666676655544

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.58  E-value=1.2e-13  Score=136.58  Aligned_cols=199  Identities=16%  Similarity=0.166  Sum_probs=131.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCcc----CCCCCCCCceEEeC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRY----FPEQKLPENVIATT  191 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~-----------~g~~~~~----~~~~~l~~~i~a~~  191 (458)
                      ++||+|||+|.||+.||..|+++|  ++|++|||++++++...+           .|.-...    +.......++.+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~   92 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   92 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence            578999999999999999999999  999999999988776432           1210000    00000112467788


Q ss_pred             CHHhhcCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE-EEECcccH
Q 012720          192 DAKTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI-ALSGPSFA  268 (458)
Q Consensus       192 ~~~ea~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~-vl~gP~~a  268 (458)
                      ++++++++||+||+|||...  ..+++.++.+.++++++|++.++|+...       .+.+.++.+...+. ....|...
T Consensus        93 ~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~-------~l~~~~~~~~~~~g~h~~~P~~~  165 (302)
T 1f0y_A           93 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT-------SIANATTRQDRFAGLHFFNPVPV  165 (302)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH-------HHHTTSSCGGGEEEEEECSSTTT
T ss_pred             CHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH-------HHHHhcCCcccEEEEecCCCccc
Confidence            99878899999999999753  5678888988899999999888888753       22233322100011 11223211


Q ss_pred             HHHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHH
Q 012720          269 LELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQG  346 (458)
Q Consensus       269 ~ei~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~  346 (458)
                           +.. ..++.+  .+++.++.+.++++..|..+....+..+                     .+.+    .++...
T Consensus       166 -----~~~-~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g---------------------~i~n----r~l~~~  214 (302)
T 1f0y_A          166 -----MKL-VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG---------------------FIVN----RLLVPY  214 (302)
T ss_dssp             -----CCE-EEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT---------------------TTHH----HHHHHH
T ss_pred             -----Cce-EEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc---------------------ccHH----HHHHHH
Confidence                 122 223333  3789999999999999977666554321                     0111    222356


Q ss_pred             HHHHHHHHHHcCCCccccc
Q 012720          347 CSEIRWLATKMGAKPATIT  365 (458)
Q Consensus       347 l~E~~~la~a~Gi~~~~~~  365 (458)
                      ++|+..+++..|++++++.
T Consensus       215 ~~Ea~~l~~~g~~~~~~id  233 (302)
T 1f0y_A          215 LMEAIRLYERGDASKEDID  233 (302)
T ss_dssp             HHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHH
Confidence            8999999999889887664

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.57  E-value=3.7e-14  Score=133.52  Aligned_cols=163  Identities=16%  Similarity=0.180  Sum_probs=116.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|.||..+|..|+++|  ++|++|+|++++++.+.+.+              +... +.+++++++|+||+|
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~g--------------~~~~-~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSG--FKVVVGSRNPKRTARLFPSA--------------AQVT-FQEEAVSSPEVIFVA   90 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHSBTT--------------SEEE-EHHHHTTSCSEEEEC
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC--------------Ccee-cHHHHHhCCCEEEEC
Confidence            579999999999999999999999  99999999998877775533              2333 677788999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchh---hhHHHHHHHHhCCCCCCEEEEECcccHHHHh----ccCCeEE
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL---RMMSQIIPQALRNPRQPFIALSGPSFALELM----NKLPTAM  279 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~---~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~----~g~~t~v  279 (458)
                      +|...++++++ +.+.+ ++++||++++|+..++.   ....+.+.+.++..  .+.....+..+....    .+. +.+
T Consensus        91 v~~~~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~--~vv~~~n~~~~~~~~~~~~~g~-~~~  165 (215)
T 2vns_A           91 VFREHYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTC--TVVKAFNVISAWTLQAGPRDGN-RQV  165 (215)
T ss_dssp             SCGGGSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTS--EEEEECTTBCHHHHHTCSCSSC-CEE
T ss_pred             CChHHHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCC--eEEeccccccHhHhcccccCCc-eeE
Confidence            99877766664 65555 78999999999875432   12345666665531  111111222222111    222 234


Q ss_pred             EEccCCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720          280 VVASKDRKLANAVQQLLASKHLRISTSSDVTG  311 (458)
Q Consensus       280 ~i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~  311 (458)
                      .+.+.+++..+.++++|+..|++++..+++..
T Consensus       166 ~~~g~~~~~~~~v~~ll~~~G~~~~~~g~~~~  197 (215)
T 2vns_A          166 PICGDQPEAKRAVSEMALAMGFMPVDMGSLAS  197 (215)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCEEEECCSGGG
T ss_pred             EEecCCHHHHHHHHHHHHHcCCceEeecchhh
Confidence            56677899999999999999999998888643

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.56  E-value=4e-14  Score=139.54  Aligned_cols=186  Identities=19%  Similarity=0.261  Sum_probs=126.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.||..||..|+ +|  ++|++|||+++.+++..+. +.     + ....+++.++++++ +++||+||.|
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG--~~V~v~d~~~~~~~~~~~~-l~-----~-~~~~~i~~~~~~~~-~~~aDlViea   80 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SK--HEVVLQDVSEKALEAAREQ-IP-----E-ELLSKIEFTTTLEK-VKDCDIVMEA   80 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCHHHHHHHHHH-SC-----G-GGGGGEEEESSCTT-GGGCSEEEEC
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cC--CEEEEEECCHHHHHHHHHH-HH-----H-HHhCCeEEeCCHHH-HcCCCEEEEc
Confidence            589999999999999999999 99  9999999999988887765 10     0 01124677788876 7899999999


Q ss_pred             Ccccc-HH-HHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCC--CCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MPVQF-SS-SFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNP--RQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp~~~-v~-~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~--~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      +|... ++ .++.++.+.  +++++++.+.++.+..       +.+.+..+  .....++ .|..      +.+...++.
T Consensus        81 vpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~-------~a~~~~~~~r~~G~Hf~-~Pv~------~~~lveiv~  144 (293)
T 1zej_A           81 VFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDD-------IAERLDSPSRFLGVHWM-NPPH------VMPLVEIVI  144 (293)
T ss_dssp             CCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHH-------HHTTSSCGGGEEEEEEC-SSTT------TCCEEEEEE
T ss_pred             CcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHH-------HHHHhhcccceEeEEec-Cccc------cCCEEEEEC
Confidence            99643 44 444666655  8888876655676531       22222211  0112222 2432      122333344


Q ss_pred             c--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 012720          283 S--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       283 g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      +  .+++.++++.++++..|..+.+..|.      ++. |                    .++...++|++.++++ |++
T Consensus       145 g~~t~~~~~~~~~~l~~~lGk~~v~v~d~------fi~-N--------------------rll~~~~~EA~~l~~~-Gv~  196 (293)
T 1zej_A          145 SRFTDSKTVAFVEGFLRELGKEVVVCKGQ------SLV-N--------------------RFNAAVLSEASRMIEE-GVR  196 (293)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTCEEEEEESS------CHH-H--------------------HHHHHHHHHHHHHHHH-TCC
T ss_pred             CCCCCHHHHHHHHHHHHHcCCeEEEeccc------ccH-H--------------------HHHHHHHHHHHHHHHh-CCC
Confidence            4  47899999999999999887776653      111 1                    1123478999999999 999


Q ss_pred             ccccccc
Q 012720          361 PATITGL  367 (458)
Q Consensus       361 ~~~~~~~  367 (458)
                      ++++.+.
T Consensus       197 ~e~id~~  203 (293)
T 1zej_A          197 AEDVDRV  203 (293)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.53  E-value=5.5e-13  Score=138.78  Aligned_cols=195  Identities=17%  Similarity=0.247  Sum_probs=131.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--------HHHhhcCCCccCCC---CCCCCceEEeCCHH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--------SINEKHCNCRYFPE---QKLPENVIATTDAK  194 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--------~l~~~g~~~~~~~~---~~l~~~i~a~~~~~  194 (458)
                      .++||+|||+|.||..||..|+++|  ++|++||+++++..        .+.+.|.    +..   .....++..++|++
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e~a~~~i~~~l~~~~~~G~----l~~~~~~~~~~~i~~t~dl~  126 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLAG--IETFLVVRNEQRCKQELEVMYAREKSFKR----LNDKRIEKINANLKITSDFH  126 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHTTS----CCHHHHHHHHTTEEEESCGG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECcHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHhcceEEeCCHH
Confidence            3579999999999999999999999  99999999988432        2222221    000   01224577888886


Q ss_pred             hhcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccHHH
Q 012720          195 TALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALE  270 (458)
Q Consensus       195 ea~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a~e  270 (458)
                       ++++||+||+|||..  ....++.++.+.++++++|++.+.++...       .+.+.+..+.  ....+ ..|...  
T Consensus       127 -al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~-------~ia~~~~~p~r~iG~Hf-fnPv~~--  195 (460)
T 3k6j_A          127 -KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN-------EISSVLRDPSNLVGIHF-FNPANV--  195 (460)
T ss_dssp             -GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH-------HHHTTSSSGGGEEEEEC-CSSTTT--
T ss_pred             -HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH-------HHHHhccCCcceEEEEe-cchhhh--
Confidence             689999999999964  35678889999999999998887777653       2333332210  11111 224321  


Q ss_pred             HhccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Q 012720          271 LMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCS  348 (458)
Q Consensus       271 i~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~  348 (458)
                         . +...++.+  .+++.++++.++++..|..++...|..+-     +.|                    .++...++
T Consensus       196 ---m-~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGf-----i~N--------------------ril~~~~~  246 (460)
T 3k6j_A          196 ---I-RLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSF-----VFN--------------------RLLHVYFD  246 (460)
T ss_dssp             ---C-CEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHH-----HHH--------------------HHHHHHHH
T ss_pred             ---C-CEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHH-----HHH--------------------HHHHHHHH
Confidence               1 22223333  37899999999999999888877775431     111                    12223578


Q ss_pred             HHHHHHHHcCCCcccccc
Q 012720          349 EIRWLATKMGAKPATITG  366 (458)
Q Consensus       349 E~~~la~a~Gi~~~~~~~  366 (458)
                      |++.++++.|++++++..
T Consensus       247 EA~~l~~~~Ga~~e~ID~  264 (460)
T 3k6j_A          247 QSQKLMYEYGYLPHQIDK  264 (460)
T ss_dssp             HHHHHHHTSCCCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHH
Confidence            888888888888776654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.53  E-value=9.5e-14  Score=137.16  Aligned_cols=203  Identities=11%  Similarity=0.100  Sum_probs=128.4

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ++||+||| +|.||.++|..|+++|  ++|++|+|+++.                           +..++++++|+||+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G--~~V~~~~~~~~~---------------------------~~~~~~~~aDvVil   71 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASG--YPISILDREDWA---------------------------VAESILANADVVIV   71 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTCGG---------------------------GHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCC--CeEEEEECCccc---------------------------CHHHHhcCCCEEEE
Confidence            56899999 9999999999999999  999999998641                           34567789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d  285 (458)
                      |||...+.+++.++.++++++++|++++ |+....    .+.+.+.++....+...+.||..  +...+....+.. +.+
T Consensus        72 avp~~~~~~vl~~l~~~l~~~~iv~~~~-svk~~~----~~~~~~~~~~~~v~~hP~~g~~~--~~~~g~~~~l~~-~~~  143 (298)
T 2pv7_A           72 SVPINLTLETIERLKPYLTENMLLADLT-SVKREP----LAKMLEVHTGAVLGLHPMFGADI--ASMAKQVVVRCD-GRF  143 (298)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTSEEEECC-SCCHHH----HHHHHHHCSSEEEEEEECSCTTC--SCCTTCEEEEEE-EEC
T ss_pred             eCCHHHHHHHHHHHHhhcCCCcEEEECC-CCCcHH----HHHHHHhcCCCEEeeCCCCCCCc--hhhcCCeEEEec-CCC
Confidence            9999999999999999999999888775 444321    12233333321111122344432  122344332222 336


Q ss_pred             HHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHH-HHHHHhcc-cCCC--cHHHHHHHHHHHHHHH-HHHHcCCC
Q 012720          286 RKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAI-AAGIVVGM-NLGN--NSMAALVAQGCSEIRW-LATKMGAK  360 (458)
Q Consensus       286 ~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai-~~G~~~~~-kl~~--n~~~al~~~~l~E~~~-la~a~Gi~  360 (458)
                      ++..+.++++|+..|.+++..++...+.+.++.-+..+. +..+...+ ..+.  .....+...++..... +++-.+.+
T Consensus       144 ~~~~~~v~~l~~~~G~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~~ria~~~  223 (298)
T 2pv7_A          144 PERYEWLLEQIQIWGAKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQD  223 (298)
T ss_dssp             GGGTHHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHHHHHHHHHHHhcCC
Confidence            778899999999999998887765556665554443222 11222111 2222  2334555566665222 33334667


Q ss_pred             cccccc
Q 012720          361 PATITG  366 (458)
Q Consensus       361 ~~~~~~  366 (458)
                      |+.+.+
T Consensus       224 p~~~~d  229 (298)
T 2pv7_A          224 AELYAD  229 (298)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765544

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.50  E-value=3.2e-14  Score=143.19  Aligned_cols=167  Identities=14%  Similarity=0.152  Sum_probs=113.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC----CCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL----GADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~----~aDi  202 (458)
                      .+||+|||+|.||.+||..|.++|  ++|++|||+++.++.+.+.|.              ..+++++++++    ++|+
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G--~~V~~~dr~~~~~~~a~~~G~--------------~~~~~~~e~~~~a~~~aDl   71 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAAN--HSVFGYNRSRSGAKSAVDEGF--------------DVSADLEATLQRAAAEDAL   71 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHTTC--------------CEESCHHHHHHHHHHTTCE
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------eeeCCHHHHHHhcccCCCE
Confidence            579999999999999999999999  999999999998888776553              24557776654    5799


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC-CCCCCEEEEECcc-----cHH-HHhccC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR-NPRQPFIALSGPS-----FAL-ELMNKL  275 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg-~~~~~~~vl~gP~-----~a~-ei~~g~  275 (458)
                      ||+|||...+.++++++.++ +++++|++++ ++...    +.+.+.+.+. ..+.+...+.|+.     .+. ++..|.
T Consensus        72 VilavP~~~~~~vl~~l~~~-~~~~iv~Dv~-Svk~~----i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~  145 (341)
T 3ktd_A           72 IVLAVPMTAIDSLLDAVHTH-APNNGFTDVV-SVKTA----VYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRA  145 (341)
T ss_dssp             EEECSCHHHHHHHHHHHHHH-CTTCCEEECC-SCSHH----HHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTC
T ss_pred             EEEeCCHHHHHHHHHHHHcc-CCCCEEEEcC-CCChH----HHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCC
Confidence            99999998999999999886 7889998886 34322    2223333221 1112223344442     111 223344


Q ss_pred             CeEEEEcc-CCHH--------HHHHHHHHHhcCCCeEEEcCChHHHHHH
Q 012720          276 PTAMVVAS-KDRK--------LANAVQQLLASKHLRISTSSDVTGVEIA  315 (458)
Q Consensus       276 ~t~v~i~g-~d~e--------~~e~l~~lL~~~g~~v~~~~di~~~~~~  315 (458)
                      ++.++.+. .+++        .+++++++|+..|.+++..+.-..+...
T Consensus       146 ~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~~~HD~~~  194 (341)
T 3ktd_A          146 VWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRVGPHDAAA  194 (341)
T ss_dssp             EEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHH
T ss_pred             eEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence            43322221 2445        7899999999999888776544444433

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.23  E-value=2.5e-15  Score=140.33  Aligned_cols=165  Identities=14%  Similarity=0.161  Sum_probs=108.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .|||+|||+|+||.++|..|.++|  ++|++|+|+++ .+.+...+              +... +.+++++++|+||+|
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G--~~V~~~~r~~~-~~~~~~~g--------------~~~~-~~~~~~~~aDvVila   80 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCG--YSVVFGSRNPQ-VSSLLPRG--------------AEVL-CYSEAASRSDVIVLA   80 (201)
Confidence            579999999999999999999998  99999999876 44443222              2333 566778899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchh-hhHHHHHHHHhCCCCCCEEEEECcccHHHHhc-c----CCeEEE
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL-RMMSQIIPQALRNPRQPFIALSGPSFALELMN-K----LPTAMV  280 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~-~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~-g----~~t~v~  280 (458)
                      ||.+++++++ ++.+ +.++++||++++|+..... ..-.+.+.+.++..   ..+..-|+.+..... |    ..+ .+
T Consensus        81 v~~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~---~vvra~~n~~a~~~~~g~l~g~~~-~~  154 (201)
T 2yjz_A           81 VHREHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGA---HVVKAFNTISAWALQSGTLDASRQ-VF  154 (201)
Confidence            9998888877 5544 3468899999999853110 00012333333321   011122222222211 1    111 23


Q ss_pred             EccCCHHHHHHHHHHHhcCCCeEEEcCChHHHHHH
Q 012720          281 VASKDRKLANAVQQLLASKHLRISTSSDVTGVEIA  315 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~  315 (458)
                      +.+++++..++++++|+..|+++.+.+++....|.
T Consensus       155 ~~g~~~~~~~~v~~ll~~~G~~~~~~G~l~~a~~~  189 (201)
T 2yjz_A          155 VCGNDSKAKDRVMDIARTLGLTPLDQGSLVAAKEI  189 (201)
Confidence            45667888999999999999998887776544443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.48  E-value=3.7e-13  Score=141.53  Aligned_cols=199  Identities=16%  Similarity=0.200  Sum_probs=130.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc-------CCCccCCC---CCCCCceEEeCCHHh
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH-------CNCRYFPE---QKLPENVIATTDAKT  195 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g-------~~~~~~~~---~~l~~~i~a~~~~~e  195 (458)
                      .++||+|||+|.||..||..|+++|  ++|++||++++.++.+.+.-       .....+..   .....++..+++++ 
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-   80 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHG--HQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-   80 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-
Confidence            3579999999999999999999999  99999999999887765420       00000000   00122467788885 


Q ss_pred             hcCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccHHHH
Q 012720          196 ALLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALEL  271 (458)
Q Consensus       196 a~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a~ei  271 (458)
                      ++++||+||+|||..  ...+++.++.+.++++++|++.+.++.+.       .+.+.+..+.  ....+ ..|..   +
T Consensus        81 ~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~-------~ia~~~~~p~~~ig~hf-~~Pa~---v  149 (483)
T 3mog_A           81 ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT-------AIAAEIKNPERVAGLHF-FNPAP---V  149 (483)
T ss_dssp             GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHTTTSSSGGGEEEEEE-CSSTT---T
T ss_pred             HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH-------HHHHHccCccceEEeee-cChhh---h
Confidence            579999999999975  35688899999999999998877777653       2333332210  11112 22221   1


Q ss_pred             hccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012720          272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE  349 (458)
Q Consensus       272 ~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E  349 (458)
                        .... .++.+  .+++.++.+.++++..|..+....|..|                     ++.|+.    +...++|
T Consensus       150 --~~Lv-evv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G---------------------fi~Nr~----l~~~~~E  201 (483)
T 3mog_A          150 --MKLV-EVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPG---------------------FIVNRV----ARPYYSE  201 (483)
T ss_dssp             --CCEE-EEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT---------------------TTHHHH----THHHHHH
T ss_pred             --CCeE-EEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc---------------------chHHHH----HHHHHHH
Confidence              1222 22333  2789999999999999988777666432                     112222    2236788


Q ss_pred             HHHHHHHcCCCcccccc
Q 012720          350 IRWLATKMGAKPATITG  366 (458)
Q Consensus       350 ~~~la~a~Gi~~~~~~~  366 (458)
                      +..+++..|++++++..
T Consensus       202 a~~l~~~g~~~~~~id~  218 (483)
T 3mog_A          202 AWRALEEQVAAPEVIDA  218 (483)
T ss_dssp             HHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHH
Confidence            88888888887766543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.43  E-value=2.9e-12  Score=140.96  Aligned_cols=198  Identities=14%  Similarity=0.184  Sum_probs=131.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-------cCCCccCCC---CCCCCceEEeCCHHh
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-------HCNCRYFPE---QKLPENVIATTDAKT  195 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-------g~~~~~~~~---~~l~~~i~a~~~~~e  195 (458)
                      .++||+|||+|.||+.||..|+++|  ++|++||++++.++...+.       ......++.   ......++.++|+ +
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~aG--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~  387 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-E  387 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTTT--CCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-G
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-H
Confidence            3578999999999999999999999  9999999999887764321       000001111   0123467888888 4


Q ss_pred             hcCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccHHHH
Q 012720          196 ALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALEL  271 (458)
Q Consensus       196 a~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a~ei  271 (458)
                      ++++||+||+|||...  ...++.++.++++++++|++.++++.+.       .+.+.+..+.  ....+ ..|...   
T Consensus       388 ~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~-------~la~~~~~p~~~iG~hf-~~P~~~---  456 (725)
T 2wtb_A          388 SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN-------KIGERTKSQDRIVGAHF-FSPAHI---  456 (725)
T ss_dssp             GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHTTTCSCTTTEEEEEE-CSSTTT---
T ss_pred             HHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH-------HHHHHhcCCCCEEEecC-CCCccc---
Confidence            6899999999999754  5677888999999999988877777653       1333222211  11122 234321   


Q ss_pred             hccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012720          272 MNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE  349 (458)
Q Consensus       272 ~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E  349 (458)
                         .+...++.+  .+++.++++.++++..|..+.+..|..+                      +..|   .++...++|
T Consensus       457 ---~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G----------------------fi~N---ril~~~~~E  508 (725)
T 2wtb_A          457 ---MPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTG----------------------FAVN---RMFFPYTQA  508 (725)
T ss_dssp             ---CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESSTT----------------------TTHH---HHHHHHHHH
T ss_pred             ---CceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCcc----------------------HHHH---HHHHHHHHH
Confidence               122223333  3789999999999999988777666422                      1111   122346788


Q ss_pred             HHHHHHHcCCCcccccc
Q 012720          350 IRWLATKMGAKPATITG  366 (458)
Q Consensus       350 ~~~la~a~Gi~~~~~~~  366 (458)
                      +..+++. |++++++..
T Consensus       509 a~~l~~~-G~~~e~id~  524 (725)
T 2wtb_A          509 AMFLVEC-GADPYLIDR  524 (725)
T ss_dssp             HHHHHHT-TCCHHHHHH
T ss_pred             HHHHHHC-CCCHHHHHH
Confidence            8888887 888776554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.39  E-value=1.6e-11  Score=128.59  Aligned_cols=165  Identities=14%  Similarity=0.135  Sum_probs=109.5

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----------cCCCccCCCCCCCCceEEeCCHH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-----------g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      .++||+|||+|.||+.||..|+++|  ++|++||++++.++...+.           |.-   .+...-....++++++ 
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~---~~~~~~~~~~~i~~~~-  109 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQ---NGQASAKPKLRFSSST-  109 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCEEEESCG-
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHhhhcCCH-
Confidence            4679999999999999999999999  9999999999877765431           100   0000001123456777 


Q ss_pred             hhcCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECcccHHH
Q 012720          195 TALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSFALE  270 (458)
Q Consensus       195 ea~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~a~e  270 (458)
                      +++++||+||+|||...  ..+++.++.+.++++++|++.++++...       .+.+.+..+.  ....+ ..|...  
T Consensus       110 ~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~-------~la~~~~~~~~~ig~hf-~~P~~~--  179 (463)
T 1zcj_A          110 KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD-------DIASSTDRPQLVIGTHF-FSPAHV--  179 (463)
T ss_dssp             GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHHTTSSCGGGEEEEEE-CSSTTT--
T ss_pred             HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHH-------HHHHHhcCCcceEEeec-CCCccc--
Confidence            45789999999999753  5678888988999999998866555432       2333322210  11122 245321  


Q ss_pred             HhccCCeEEEEc-cCCHHHHHHHHHHHhcCCCeEEEcCCh
Q 012720          271 LMNKLPTAMVVA-SKDRKLANAVQQLLASKHLRISTSSDV  309 (458)
Q Consensus       271 i~~g~~t~v~i~-g~d~e~~e~l~~lL~~~g~~v~~~~di  309 (458)
                         .....++.+ ..+++.++.+.++++..|..+.+..|.
T Consensus       180 ---~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~  216 (463)
T 1zcj_A          180 ---MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC  216 (463)
T ss_dssp             ---CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCS
T ss_pred             ---ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCC
Confidence               122222233 357899999999999998887776664

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.38  E-value=1.1e-11  Score=136.35  Aligned_cols=194  Identities=14%  Similarity=0.132  Sum_probs=127.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-----------hcCCCccCCC---CCCCCceEEeC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE-----------KHCNCRYFPE---QKLPENVIATT  191 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~-----------~g~~~~~~~~---~~l~~~i~a~~  191 (458)
                      ..+||+|||+|.||..||..|+++|  ++|++||++++.++....           .|.    +..   .....+++.++
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~----~~~~~~~~~~~~i~~~~  386 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINEHGIEQGLAEAAKLLVGRVDKGR----MTPAKMAEVLNGIRPTL  386 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHHHHHHHHHTTTS----SCHHHHHHHHHHEEEES
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHhcCeEEEC
Confidence            3578999999999999999999999  999999999987765321           111    000   00112367777


Q ss_pred             CHHhhcCCCCEEEEcCcccc--HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC--CCEEEEECccc
Q 012720          192 DAKTALLGADYCLHAMPVQF--SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR--QPFIALSGPSF  267 (458)
Q Consensus       192 ~~~ea~~~aDiVilaVp~~~--v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~--~~~~vl~gP~~  267 (458)
                      |+ +++++||+||+|||...  ...++.++.++++++++|++.+.++.+.       .+.+.+..+.  ....+ ..|..
T Consensus       387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~-------~la~~~~~~~~~ig~hf-~~P~~  457 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS-------LLAKALKRPENFVGMHF-FNPVH  457 (715)
T ss_dssp             SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH-------HHGGGCSCGGGEEEEEC-CSSTT
T ss_pred             CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH-------HHHHHhcCccceEEEEc-cCCcc
Confidence            88 56899999999999653  5678888989999999998887777653       2333332210  11111 22332


Q ss_pred             HHHHhccCCeEEEEcc--CCHHHHHHHHHHHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Q 012720          268 ALELMNKLPTAMVVAS--KDRKLANAVQQLLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQ  345 (458)
Q Consensus       268 a~ei~~g~~t~v~i~g--~d~e~~e~l~~lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~  345 (458)
                      .     + +...++.+  .+++.++.+.++++..|..+.+..|..+                      +..|   .++..
T Consensus       458 ~-----~-~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~G----------------------fi~N---ril~~  506 (715)
T 1wdk_A          458 M-----M-PLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPG----------------------FLVN---RVLFP  506 (715)
T ss_dssp             T-----C-CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT----------------------TTHH---HHHHH
T ss_pred             c-----C-ceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCC----------------------hhhh---HHHHH
Confidence            1     1 22222333  2789999999999999988777666422                      1111   12234


Q ss_pred             HHHHHHHHHHHcCCCcccccc
Q 012720          346 GCSEIRWLATKMGAKPATITG  366 (458)
Q Consensus       346 ~l~E~~~la~a~Gi~~~~~~~  366 (458)
                      .++|+..+++. |++++++..
T Consensus       507 ~~~Ea~~l~~~-G~~~~~id~  526 (715)
T 1wdk_A          507 YFGGFAKLVSA-GVDFVRIDK  526 (715)
T ss_dssp             HHHHHHHHHHT-TCCHHHHHH
T ss_pred             HHHHHHHHHHC-CCCHHHHHH
Confidence            57888888886 888776543

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.37  E-value=6.4e-13  Score=129.66  Aligned_cols=151  Identities=11%  Similarity=0.126  Sum_probs=91.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||+|||+|+||..+|..|+++   ++| .+|+|+++.++.+.+..             ++ .+.+++++++++|+||+
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~---~~v~~v~~~~~~~~~~~~~~~-------------g~-~~~~~~~~~~~~DvVil   64 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR---YEIGYILSRSIDRARNLAEVY-------------GG-KAATLEKHPELNGVVFV   64 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHHT-------------CC-CCCSSCCCCC---CEEE
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc---CcEEEEEeCCHHHHHHHHHHc-------------CC-ccCCHHHHHhcCCEEEE
Confidence            57999999999999999999865   688 59999999888876531             01 23466667788999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d  285 (458)
                      |||.+.+.+++.++.   .++++||+++.++..+.       +.+......++...+.|+........+.+  ..+.+ +
T Consensus        65 av~~~~~~~v~~~l~---~~~~ivi~~s~~~~~~~-------l~~~~~~~~~p~~~~~g~~~~~~~~~~~~--~~~~~-~  131 (276)
T 2i76_A           65 IVPDRYIKTVANHLN---LGDAVLVHCSGFLSSEI-------FKKSGRASIHPNFSFSSLEKALEMKDQIV--FGLEG-D  131 (276)
T ss_dssp             CSCTTTHHHHHTTTC---CSSCCEEECCSSSCGGG-------GCSSSEEEEEECSCC--CTTGGGCGGGCC--EEECC-C
T ss_pred             eCChHHHHHHHHHhc---cCCCEEEECCCCCcHHH-------HHHhhccccchhhhcCCCchhHHHhCCCe--EEEEe-C
Confidence            999999999888775   57889999886554432       11111100011112333222211122332  23333 4


Q ss_pred             HHHHHHHHHHHhcCCCeEEEcC
Q 012720          286 RKLANAVQQLLASKHLRISTSS  307 (458)
Q Consensus       286 ~e~~e~l~~lL~~~g~~v~~~~  307 (458)
                      ++.++.++++|+..|.+++..+
T Consensus       132 ~~~~~~~~~l~~~lG~~~~~v~  153 (276)
T 2i76_A          132 ERGLPIVKKIAEEISGKYFVIP  153 (276)
T ss_dssp             TTTHHHHHHHHHHHCSCEEECC
T ss_pred             hHHHHHHHHHHHHhCCCEEEEC
Confidence            5558899999998887666554

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.30  E-value=4.3e-11  Score=120.26  Aligned_cols=154  Identities=19%  Similarity=0.261  Sum_probs=106.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .|||+|||+|.||.++|..|.++|  ++|++|+|+++. .+...+.|              +..+ +++++++++|+||+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G--~~V~~~~~~~~~~~~~a~~~G--------------~~~~-~~~e~~~~aDvVil   78 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSG--VDVTVGLRSGSATVAKAEAHG--------------LKVA-DVKTAVAAADVVMI   78 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHTT--------------CEEE-CHHHHHHTCSEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHHCc--CEEEEEECChHHHHHHHHHCC--------------CEEc-cHHHHHhcCCEEEE
Confidence            579999999999999999999999  899999998765 44444433              2344 77788899999999


Q ss_pred             cCccccHHHHHH-hhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHH-HHhc---cCCeE
Q 012720          206 AMPVQFSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFAL-ELMN---KLPTA  278 (458)
Q Consensus       206 aVp~~~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~-ei~~---g~~t~  278 (458)
                      |||.....+++. ++.+.++++++|+++. |+..        .+.+........+.  .-.||.++. +...   |.+..
T Consensus        79 avp~~~~~~v~~~~i~~~l~~~~ivi~~~-gv~~--------~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~i  149 (338)
T 1np3_A           79 LTPDEFQGRLYKEEIEPNLKKGATLAFAH-GFSI--------HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDL  149 (338)
T ss_dssp             CSCHHHHHHHHHHHTGGGCCTTCEEEESC-CHHH--------HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEE
T ss_pred             eCCcHHHHHHHHHHHHhhCCCCCEEEEcC-Cchh--------HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEE
Confidence            999998899998 9999999999998764 5432        11121111111111  114666543 3333   66654


Q ss_pred             EEEc-cCCHHHHHHHHHHHhcCCC-e--EEEc
Q 012720          279 MVVA-SKDRKLANAVQQLLASKHL-R--ISTS  306 (458)
Q Consensus       279 v~i~-g~d~e~~e~l~~lL~~~g~-~--v~~~  306 (458)
                      +... ..+.+..+.+..+++..|. +  +...
T Consensus       150 i~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~  181 (338)
T 1np3_A          150 IAIYQDASGNAKNVALSYACGVGGGRTGIIET  181 (338)
T ss_dssp             EEEEECSSSCHHHHHHHHHHHTTHHHHCEEEC
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCccceEee
Confidence            3433 3355677889999999887 4  5544

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.29  E-value=4.2e-11  Score=123.93  Aligned_cols=161  Identities=14%  Similarity=0.129  Sum_probs=107.8

Q ss_pred             hhhcCCCeEEEECcchHHHHHHHHHHhc------CCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720          122 DILERTNKVVVLGGGSFGTAMAAHVANK------KSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       122 ~~~~~~~kI~IIGaG~mG~~iA~~La~a------G~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      +.+...+||+|||+|+||.++|..|.++      |  ++|++..|... ..+...+.|....       .   ....+++
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G--~~ViVg~r~~sks~e~A~e~G~~v~-------d---~ta~s~a  116 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKIGLRKGSKSFDEARAAGFTEE-------S---GTLGDIW  116 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCC--CEEEEEECTTCSCHHHHHHTTCCTT-------T---TCEEEHH
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCC--CEEEEEeCCchhhHHHHHHCCCEEe-------c---CCCCCHH
Confidence            3444447999999999999999999998      8  89988776543 3334444453210       0   0123678


Q ss_pred             hhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH---HhCCCCCCEEEEECcccHHHH
Q 012720          195 TALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ---ALRNPRQPFIALSGPSFALEL  271 (458)
Q Consensus       195 ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~---~lg~~~~~~~vl~gP~~a~ei  271 (458)
                      ++++++|+||++||.....+++.+|.+++++|++| ++.-|+...       .+.+   .++.. . -+++..|+.+...
T Consensus       117 EAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaIL-s~AaGf~I~-------~le~~~i~~p~d-v-~VVrVmPNtPg~~  186 (525)
T 3fr7_A          117 ETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSIL-GLSHGFLLG-------HLQSAGLDFPKN-I-SVIAVCPKGMGPS  186 (525)
T ss_dssp             HHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEE-EESSSHHHH-------HHHHTTCCCCTT-S-EEEEEEESSCHHH
T ss_pred             HHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeE-EEeCCCCHH-------HHhhhcccCCCC-C-cEEEEecCCCchh
Confidence            88999999999999988888999999999999985 566587542       3333   22221 1 2456667665543


Q ss_pred             -------h-----ccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEE
Q 012720          272 -------M-----NKLPTAMVVAS-KDRKLANAVQQLLASKHLRIS  304 (458)
Q Consensus       272 -------~-----~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~  304 (458)
                             +     .|.+..+.+.. .+.+..+.+..++...|....
T Consensus       187 VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          187 VRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence                   2     45554443322 234667888999998886533

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.23  E-value=1.8e-10  Score=114.53  Aligned_cols=198  Identities=15%  Similarity=0.147  Sum_probs=127.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc---C----CCccCCCC-C---CCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH---C----NCRYFPEQ-K---LPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g---~----~~~~~~~~-~---l~~~i~a~~~~~e  195 (458)
                      ..||+|||+|.||..+|..++.+|  ++|++||++++.++...+.-   +    ....+.+. .   .-..+..++|+++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGG--FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            368999999999999999999999  99999999987654332210   0    00001110 0   1134677889999


Q ss_pred             hcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHH
Q 012720          196 ALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALEL  271 (458)
Q Consensus       196 a~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei  271 (458)
                      ++++||+||-|||.  .-..+++.+|.+++++++++.+.+.++.+.       .+.+.+..+ ..+.  -...|.+..  
T Consensus        84 a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is-------~ia~~~~~p-~r~ig~HffNP~~~m--  153 (319)
T 3ado_A           84 AVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS-------KLFTGLAHV-KQCIVAHPVNPPYYI--  153 (319)
T ss_dssp             HTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH-------HHHTTCTTG-GGEEEEEECSSTTTC--
T ss_pred             HhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch-------hhhhhccCC-CcEEEecCCCCcccc--
Confidence            99999999999996  347788899999999999998888888764       223322221 1121  234444322  


Q ss_pred             hccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEE-EcCChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Q 012720          272 MNKLPTAMVVAS-KDRKLANAVQQLLASKHLRIS-TSSDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSE  349 (458)
Q Consensus       272 ~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~-~~~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E  349 (458)
                         ....++.+. -+++.++++.++++..|.... ...|..|                      +..|   .+....++|
T Consensus       154 ---~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pG----------------------Fi~N---Rl~~~~~~E  205 (319)
T 3ado_A          154 ---PLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDG----------------------FVLN---RLQYAIISE  205 (319)
T ss_dssp             ---CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTT----------------------TTHH---HHHHHHHHH
T ss_pred             ---chHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCC----------------------EeHH---HHHHHHHHH
Confidence               111222222 367899999999999987654 5455432                      1111   233456677


Q ss_pred             HHHHHHHcCCCcccc
Q 012720          350 IRWLATKMGAKPATI  364 (458)
Q Consensus       350 ~~~la~a~Gi~~~~~  364 (458)
                      ++.+.+.-+.+++++
T Consensus       206 A~~lv~eGvas~edI  220 (319)
T 3ado_A          206 AWRLVEEGIVSPSDL  220 (319)
T ss_dssp             HHHHHHTTSSCHHHH
T ss_pred             HHHHHHhCCCCHHHH
Confidence            777766555555544

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.10  E-value=7.4e-11  Score=118.99  Aligned_cols=135  Identities=12%  Similarity=0.154  Sum_probs=96.8

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-.+.++.++.|.|+.      ......+.++.  .|+|+|||+|.||..+|.+|...|  ++|++|+|++...+...+
T Consensus       136 R~~~~~~~~~~~g~W~~------~~~~~~~~~l~--gktvGIIG~G~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~  205 (351)
T 3jtm_A          136 RNFVPGYNQVVKGEWNV------AGIAYRAYDLE--GKTIGTVGAGRIGKLLLQRLKPFG--CNLLYHDRLQMAPELEKE  205 (351)
T ss_dssp             HTHHHHHHHHHTTCCCH------HHHHTTCCCST--TCEEEEECCSHHHHHHHHHHGGGC--CEEEEECSSCCCHHHHHH
T ss_pred             hCcHHHHHHHHcCCCcc------ccccCCccccc--CCEEeEEEeCHHHHHHHHHHHHCC--CEEEEeCCCccCHHHHHh
Confidence            55566778888887764      11111233343  679999999999999999999888  999999998644444444


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      .|              +...++++++++++|+|++++|. ..+..++ .+....+++++++|+++.|-..++ +.+.+.+
T Consensus       206 ~g--------------~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde-~aL~~aL  270 (351)
T 3jtm_A          206 TG--------------AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMER-QAVVDAV  270 (351)
T ss_dssp             HC--------------CEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             CC--------------CeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCH-HHHHHHH
Confidence            33              23446899999999999999995 4566555 456777899999999998866553 3344444


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       271 ~~  272 (351)
T 3jtm_A          271 ES  272 (351)
T ss_dssp             HH
T ss_pred             Hh
Confidence            33

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.09  E-value=1.2e-10  Score=116.90  Aligned_cols=121  Identities=15%  Similarity=0.171  Sum_probs=82.3

Q ss_pred             cccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720           90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus        90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++-...+|.++.|.|++..      ....+.++.  .|+|+|||+|.||..+|.+|...|  ++|.+|+|+++.     
T Consensus       142 ~R~~~~~~~~~~~g~W~~~~------~~~~~~~l~--gktiGIIGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~-----  206 (340)
T 4dgs_A          142 LRRVGDGDRLVREGRWAAGE------QLPLGHSPK--GKRIGVLGLGQIGRALASRAEAFG--MSVRYWNRSTLS-----  206 (340)
T ss_dssp             HTTHHHHHHHHHTTCC------------CCCCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSCCT-----
T ss_pred             HhChHHHHHHHhcCCccccc------CcCcccccc--CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCccc-----
Confidence            36667788889999887510      011234454  679999999999999999999888  999999998643     


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcc
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      ..              ......+++++++++|+|++++|. ..+..++ .+..+.+++++++|+++.|-..+
T Consensus       207 ~~--------------~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvd  264 (340)
T 4dgs_A          207 GV--------------DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVD  264 (340)
T ss_dssp             TS--------------CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC----
T ss_pred             cc--------------CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccC
Confidence            10              123446889999999999999994 5677777 56778899999999999885544

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.09  E-value=1.5e-10  Score=116.17  Aligned_cols=137  Identities=16%  Similarity=0.300  Sum_probs=96.9

Q ss_pred             ccCCcccchhhHHhhhhc-ccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720           91 TRDGRDRRKIVKVAWEKL-VRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      ++-...+|.++.+.|.+. .+|.+.+  ..+.++.  .|+|+|||+|.||..+|..|+..|  ++|++|+|+++. +...
T Consensus       117 R~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~l~--g~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~-~~~~  189 (334)
T 2dbq_A          117 RHVVKGDRFVRSGEWKKRGVAWHPKW--FLGYDVY--GKTIGIIGLGRIGQAIAKRAKGFN--MRILYYSRTRKE-EVER  189 (334)
T ss_dssp             HTHHHHHHHHHTSHHHHTTCCCCTTT--TCCCCCT--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCH-HHHH
T ss_pred             hCHHHHHHHHHcCCCccccccccccc--ccccCCC--CCEEEEEccCHHHHHHHHHHHhCC--CEEEEECCCcch-hhHh
Confidence            555667888888988621 0132211  1133443  579999999999999999999988  999999999866 4443


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcccc-HHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~  247 (458)
                      +.|              +.. .+++++++++|+|++++|... ++.++ .++.+.+++++++|++++|...++ ..+.+.
T Consensus       190 ~~g--------------~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~-~aL~~a  253 (334)
T 2dbq_A          190 ELN--------------AEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDT-NALVKA  253 (334)
T ss_dssp             HHC--------------CEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCH-HHHHHH
T ss_pred             hcC--------------ccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCH-HHHHHH
Confidence            333              222 378888899999999999754 66665 456778899999999998865543 334445


Q ss_pred             HHH
Q 012720          248 IPQ  250 (458)
Q Consensus       248 l~~  250 (458)
                      +.+
T Consensus       254 L~~  256 (334)
T 2dbq_A          254 LKE  256 (334)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.07  E-value=1.1e-10  Score=116.86  Aligned_cols=135  Identities=14%  Similarity=0.237  Sum_probs=95.3

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.+.|.+   |...+  ..+.++.  .|+|+|||+|.||..+|..|+..|  ++|++|+|+.+..+...+
T Consensus       126 R~~~~~~~~~~~~~w~~---~~~~~--~~~~~l~--g~~vgIIG~G~iG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~  196 (330)
T 2gcg_A          126 RRLPEAIEEVKNGGWTS---WKPLW--LCGYGLT--QSTVGIIGLGRIGQAIARRLKPFG--VQRFLYTGRQPRPEEAAE  196 (330)
T ss_dssp             TTHHHHHHHHHTTCCCS---CCTTS--SCBCCCT--TCEEEEECCSHHHHHHHHHHGGGT--CCEEEEESSSCCHHHHHT
T ss_pred             hCHHHHHHHHHcCCCcc---cCccc--ccCcCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCcchhHHHh
Confidence            45556778888888864   32221  1233443  579999999999999999999888  999999998754444433


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      .+              +... +++++++++|+|++++|.. .++.++ .++.+.+++++++|+++.|-..++ ..+.+.+
T Consensus       197 ~g--------------~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~-~aL~~aL  260 (330)
T 2gcg_A          197 FQ--------------AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQ-DDLYQAL  260 (330)
T ss_dssp             TT--------------CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             cC--------------ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHH
Confidence            22              2333 7888889999999999964 455555 456677889999999998744432 3444555


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       261 ~~  262 (330)
T 2gcg_A          261 AS  262 (330)
T ss_dssp             HH
T ss_pred             Hc
Confidence            44

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.07  E-value=2.3e-10  Score=115.51  Aligned_cols=138  Identities=11%  Similarity=0.107  Sum_probs=99.1

Q ss_pred             ccCCcccchhhHHhhhhcc----cccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 012720           91 TRDGRDRRKIVKVAWEKLV----RWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ  166 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e  166 (458)
                      ++-...++.++.|.|+...    .|.+.+  ..+.++.  .++|||||+|.||..+|.+|...|  ++|++|+|+... +
T Consensus       124 R~~~~~~~~~~~g~W~~~~~~~~~~~~~~--~~~~~l~--g~tvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-~  196 (352)
T 3gg9_A          124 RRIPQYVASLKHGAWQQSGLKSTTMPPNF--GIGRVLK--GQTLGIFGYGKIGQLVAGYGRAFG--MNVLVWGRENSK-E  196 (352)
T ss_dssp             TTHHHHHHHHHTTCTTCCCCCCTTSCTTT--TSBCCCT--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSHHHH-H
T ss_pred             hhHHHHHHHHHcCCCCccccccccccccc--ccCccCC--CCEEEEEeECHHHHHHHHHHHhCC--CEEEEECCCCCH-H
Confidence            5556778888889887632    243221  1234444  679999999999999999999888  999999998643 3


Q ss_pred             HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhH
Q 012720          167 SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMM  244 (458)
Q Consensus       167 ~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l  244 (458)
                      ...+.|              +...++++++++++|+|++++|. ..++.++ .+..+.+++++++|+++.|-..++ +.+
T Consensus       197 ~~~~~g--------------~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~-~aL  261 (352)
T 3gg9_A          197 RARADG--------------FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEE-NGM  261 (352)
T ss_dssp             HHHHTT--------------CEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCT-THH
T ss_pred             HHHhcC--------------ceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcH-HHH
Confidence            333333              34456889999999999999995 4455555 356778899999999998765543 344


Q ss_pred             HHHHHH
Q 012720          245 SQIIPQ  250 (458)
Q Consensus       245 ~e~l~~  250 (458)
                      .+.+.+
T Consensus       262 ~~aL~~  267 (352)
T 3gg9_A          262 VTALNR  267 (352)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            455544

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.06  E-value=1.5e-10  Score=116.44  Aligned_cols=133  Identities=19%  Similarity=0.219  Sum_probs=96.6

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...+|.++.|.|++   |.+.+  ..+.++.  .++|||||+|.||..+|.+|...|  ++|.+|+|++...+... 
T Consensus       144 R~~~~~~~~~r~g~W~~---~~~~~--~~g~~l~--gktvGIIGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~-  213 (345)
T 4g2n_A          144 RRGYEADRMVRSGSWPG---WGPTQ--LLGMGLT--GRRLGIFGMGRIGRAIATRARGFG--LAIHYHNRTRLSHALEE-  213 (345)
T ss_dssp             HTHHHHHHHHHTTCCCC---CCTTT--TCBCCCT--TCEEEEESCSHHHHHHHHHHHTTT--CEEEEECSSCCCHHHHT-
T ss_pred             hCHHHHHHHHHcCCCcc---cCccc--ccccccC--CCEEEEEEeChhHHHHHHHHHHCC--CEEEEECCCCcchhhhc-
Confidence            56677888889998875   43211  1244554  679999999999999999999777  99999999863322211 


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                       +              +...++++++++++|+|++++|. ..+..++ .+....+++++++|+++.|-..++ +.+.+.+
T Consensus       214 -g--------------~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde-~aL~~aL  277 (345)
T 4g2n_A          214 -G--------------AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIND-DALIEAL  277 (345)
T ss_dssp             -T--------------CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             -C--------------CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCH-HHHHHHH
Confidence             2              23445889999999999999995 4566555 456778899999999998866653 3344444


Q ss_pred             H
Q 012720          249 P  249 (458)
Q Consensus       249 ~  249 (458)
                      .
T Consensus       278 ~  278 (345)
T 4g2n_A          278 R  278 (345)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.05  E-value=1.1e-10  Score=116.89  Aligned_cols=135  Identities=14%  Similarity=0.168  Sum_probs=97.3

Q ss_pred             cccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720           90 RTRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus        90 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++-...+|.++.|.|..   |.+.   ..+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|++...+...
T Consensus       116 ~R~~~~~~~~~~~g~w~~---~~~~---~~~~~l~--g~tvGIIG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~  185 (330)
T 4e5n_A          116 GRHLRAADAFVRSGKFRG---WQPR---FYGTGLD--NATVGFLGMGAIGLAMADRLQGWG--ATLQYHEAKALDTQTEQ  185 (330)
T ss_dssp             HTTHHHHHHHHHTTCCCS---CCSC---CCCCCST--TCEEEEECCSHHHHHHHHHTTTSC--CEEEEECSSCCCHHHHH
T ss_pred             HhChHHHHHHHHhCCccc---cCcc---ccCCccC--CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCCCCcHhHHH
Confidence            356667788889998874   5431   1244454  679999999999999999998877  99999999863333333


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~  247 (458)
                      ..|              +.. .+++++++++|+|++++|. ..+..++ .+....+++++++|+++.|-..++ ..+.+.
T Consensus       186 ~~g--------------~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~-~aL~~a  249 (330)
T 4e5n_A          186 RLG--------------LRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDE-AAVLAA  249 (330)
T ss_dssp             HHT--------------EEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCH-HHHHHH
T ss_pred             hcC--------------cee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCH-HHHHHH
Confidence            333              222 3788889999999999995 4555555 457788999999999998865543 334444


Q ss_pred             HHH
Q 012720          248 IPQ  250 (458)
Q Consensus       248 l~~  250 (458)
                      +.+
T Consensus       250 L~~  252 (330)
T 4e5n_A          250 LER  252 (330)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            433

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.05  E-value=1.2e-10  Score=116.76  Aligned_cols=129  Identities=15%  Similarity=0.181  Sum_probs=93.3

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|+..     .  ...+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+++..+    
T Consensus       137 R~~~~~~~~~~~g~w~~~-----~--~~~~~~l~--g~~vgIIG~G~iG~~vA~~l~~~G--~~V~~~dr~~~~~~----  201 (333)
T 3ba1_A          137 RRICECDKYVRRGAWKFG-----D--FKLTTKFS--GKRVGIIGLGRIGLAVAERAEAFD--CPISYFSRSKKPNT----  201 (333)
T ss_dssp             TTHHHHHHHHHTTGGGGC-----C--CCCCCCCT--TCCEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCCTTC----
T ss_pred             hCHHHHHHHHHcCCCCcc-----c--cccccccC--CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCchhcc----
Confidence            555667788888877530     1  11233444  578999999999999999999888  99999999865311    


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                       +              +....+++++++++|+|++++|.. .++.++ .++.+.+++++++|+++.|...++ +.+.+.+
T Consensus       202 -g--------------~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~-~aL~~aL  265 (333)
T 3ba1_A          202 -N--------------YTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDE-PELVSAL  265 (333)
T ss_dssp             -C--------------SEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             -C--------------ceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCH-HHHHHHH
Confidence             1              234568888889999999999974 566666 345667889999999998876653 3344445


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       266 ~~  267 (333)
T 3ba1_A          266 VE  267 (333)
T ss_dssp             HH
T ss_pred             Hc
Confidence            43

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.05  E-value=1.2e-09  Score=103.75  Aligned_cols=132  Identities=17%  Similarity=0.150  Sum_probs=94.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .|||+|||+|.||++||..|.++|  ++|++|++.                                ++ +.++|  |+|
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G--~~V~~~~~~--------------------------------~~-~~~aD--ila   48 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVG--HYVTVLHAP--------------------------------ED-IRDFE--LVV   48 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTT--CEEEECSSG--------------------------------GG-GGGCS--EEE
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCC--CEEEEecCH--------------------------------HH-hccCC--EEE
Confidence            579999999999999999999999  999999982                                12 35688  999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEE-CcccHHHHhccCCeEEEEccCC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS-GPSFALELMNKLPTAMVVASKD  285 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~-gP~~a~ei~~g~~t~v~i~g~d  285 (458)
                      ||..++.+++.++.+.++++++|++++..+..+   .+ +.+.+ .|.     .++. -|..      +...  .+...+
T Consensus        49 vP~~ai~~vl~~l~~~l~~g~ivvd~sgs~~~~---vl-~~~~~-~g~-----~fvg~HPm~------g~~~--~i~a~d  110 (232)
T 3dfu_A           49 IDAHGVEGYVEKLSAFARRGQMFLHTSLTHGIT---VM-DPLET-SGG-----IVMSAHPIG------QDRW--VASALD  110 (232)
T ss_dssp             ECSSCHHHHHHHHHTTCCTTCEEEECCSSCCGG---GG-HHHHH-TTC-----EEEEEEEEE------TTEE--EEEESS
T ss_pred             EcHHHHHHHHHHHHHhcCCCCEEEEECCcCHHH---HH-HHHHh-CCC-----cEEEeeeCC------CCce--eeeCCC
Confidence            999999999999999999999999987333322   11 12222 132     2221 1321      2222  233447


Q ss_pred             HHHHHHHHHHHhcCCCeEEEcCChHHHH
Q 012720          286 RKLANAVQQLLASKHLRISTSSDVTGVE  313 (458)
Q Consensus       286 ~e~~e~l~~lL~~~g~~v~~~~di~~~~  313 (458)
                      ++.++.++++++..|.+++..+.-....
T Consensus       111 ~~a~~~l~~L~~~lG~~vv~~~~~~hd~  138 (232)
T 3dfu_A          111 ELGETIVGLLVGELGGSIVEIADDKRAQ  138 (232)
T ss_dssp             HHHHHHHHHHHHHTTCEECCCCGGGHHH
T ss_pred             HHHHHHHHHHHHHhCCEEEEeCHHHHhH
Confidence            8889999999999999988776544433

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.02  E-value=1.9e-10  Score=115.33  Aligned_cols=131  Identities=18%  Similarity=0.266  Sum_probs=92.9

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhcccc----chhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAK----TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ  166 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e  166 (458)
                      ++-...++.++.|.|++   |..   ...+    .++.  .++|+|||+|.||..+|..|...|  ++|++|+|+++. +
T Consensus       114 R~~~~~~~~~~~g~w~~---~~~---~~~~~~~~~~l~--g~~vgIIG~G~iG~~vA~~l~~~G--~~V~~~d~~~~~-~  182 (333)
T 2d0i_A          114 RKIHYADKFIRRGEWES---HAK---IWTGFKRIESLY--GKKVGILGMGAIGKAIARRLIPFG--VKLYYWSRHRKV-N  182 (333)
T ss_dssp             HCHHHHHHHHHTTCCCC---HHH---HHTTSCCCCCST--TCEEEEECCSHHHHHHHHHHGGGT--CEEEEECSSCCH-H
T ss_pred             hHHHHHHHHHHcCCCCc---Ccc---cccCCcccCCCC--cCEEEEEccCHHHHHHHHHHHHCC--CEEEEECCCcch-h
Confidence            55566778888887753   211   1112    3343  579999999999999999999888  999999998865 3


Q ss_pred             HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHH-hhhhcCCCCCeEEEeccCCCcchhhhH
Q 012720          167 SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMM  244 (458)
Q Consensus       167 ~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t~~~l  244 (458)
                      ...+.|              +... +++++++++|+|++++|.. .+..++. ++.+.++++ ++|++++|...++ ..+
T Consensus       183 ~~~~~g--------------~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~-~aL  245 (333)
T 2d0i_A          183 VEKELK--------------ARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDE-KAV  245 (333)
T ss_dssp             HHHHHT--------------EEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCH-HHH
T ss_pred             hhhhcC--------------ceec-CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCH-HHH
Confidence            333322              2333 7888889999999999976 6666663 456678899 9999998866553 233


Q ss_pred             HHHHH
Q 012720          245 SQIIP  249 (458)
Q Consensus       245 ~e~l~  249 (458)
                      .+.+.
T Consensus       246 ~~aL~  250 (333)
T 2d0i_A          246 TEAIK  250 (333)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            34443

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.01  E-value=1.1e-09  Score=108.46  Aligned_cols=103  Identities=12%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHH--HHH-hhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQ--SIN-EKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~~~~~e--~l~-~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +|||+|||+|+||+.+|..|+++|  +  +|+++||++++++  .+. ..+.  .+.+    +..+..+++. ++++++|
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g--~~~~V~l~d~~~~~~~~~~~~~~~~~--~~~~----~~~v~~~~~~-~~~~~aD   77 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRG--IAREIVLEDIAKERVEAEVLDMQHGS--SFYP----TVSIDGSDDP-EICRDAD   77 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSHHHHHHHHHHHHHTG--GGST----TCEEEEESCG-GGGTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCChhHHHHHHHHHHhhh--hhcC----CeEEEeCCCH-HHhCCCC
Confidence            589999999999999999999998  8  9999999987765  332 2232  1111    2234555565 4578999


Q ss_pred             EEEEcCccccHH----------------HHHHhhhhcCCCCCeEEEeccCCCcc
Q 012720          202 YCLHAMPVQFSS----------------SFLEGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       202 iVilaVp~~~v~----------------~vl~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      +||++++.....                +++..+.++ .++++|+.++||++..
T Consensus        78 ~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~  130 (319)
T 1lld_A           78 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIA  130 (319)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHH
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHH
Confidence            999999754433                677777775 6788999999998753

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.01  E-value=5.9e-10  Score=113.88  Aligned_cols=125  Identities=11%  Similarity=0.063  Sum_probs=89.7

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|+.      .+....+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|++...+...+
T Consensus       163 R~~~~~~~~~~~g~W~~------~~~~~~~~~l~--gktvGIIGlG~IG~~vA~~l~a~G--~~V~~~d~~~~~~~~~~~  232 (393)
T 2nac_A          163 RNYLPSHEWARKGGWNI------ADCVSHAYDLE--AMHVGTVAAGRIGLAVLRRLAPFD--VHLHYTDRHRLPESVEKE  232 (393)
T ss_dssp             TTHHHHHHHHHTTCCCH------HHHHTTCCCCT--TCEEEEECCSHHHHHHHHHHGGGT--CEEEEECSSCCCHHHHHH
T ss_pred             hccHHHHHHHHcCCCCc------cccccCCccCC--CCEEEEEeECHHHHHHHHHHHhCC--CEEEEEcCCccchhhHhh
Confidence            34445667777776653      22111233443  679999999999999999999888  999999998644333333


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcc
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      .|              +....+++++++++|+|++++|. ..++.++ .+..+.+++++++|+++.|-..+
T Consensus       233 ~G--------------~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  289 (393)
T 2nac_A          233 LN--------------LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCD  289 (393)
T ss_dssp             HT--------------CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred             cC--------------ceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhh
Confidence            33              23335788999999999999995 4566666 45677899999999999875544

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.00  E-value=4.4e-10  Score=112.05  Aligned_cols=135  Identities=12%  Similarity=0.203  Sum_probs=94.4

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC-CHHHHHHHH
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR-DPAVCQSIN  169 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r-~~~~~e~l~  169 (458)
                      ++-...++.++.|.|++   |.+..  ..+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+| +++.. ...
T Consensus       117 R~~~~~~~~~~~g~w~~---~~~~~--~~~~~l~--g~~vgIIG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~~-~~~  186 (320)
T 1gdh_A          117 RRAGEGEKMIRTRSWPG---WEPLE--LVGEKLD--NKTLGIYGFGSIGQALAKRAQGFD--MDIDYFDTHRASSS-DEA  186 (320)
T ss_dssp             TTHHHHHHHHHTTCCCC---CCTTT--TCBCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSCCCHH-HHH
T ss_pred             ccHHHHHHHHHcCCCCc---ccccc--ccCcCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCCcChh-hhh
Confidence            55567788888888854   32211  1233443  679999999999999999999888  99999999 77542 233


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~  247 (458)
                      +.|              +...++++++++++|+|++++|.. .+..++ ++..+.+++++++|+++.|-..++ ..+.+.
T Consensus       187 ~~g--------------~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~-~aL~~a  251 (320)
T 1gdh_A          187 SYQ--------------ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN-ELVVAA  251 (320)
T ss_dssp             HHT--------------CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH-HHHHHH
T ss_pred             hcC--------------cEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCH-HHHHHH
Confidence            333              233447888889999999999964 466666 446678899999999998743332 334444


Q ss_pred             HHH
Q 012720          248 IPQ  250 (458)
Q Consensus       248 l~~  250 (458)
                      +.+
T Consensus       252 L~~  254 (320)
T 1gdh_A          252 LEA  254 (320)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.99  E-value=3.9e-10  Score=114.38  Aligned_cols=135  Identities=11%  Similarity=0.137  Sum_probs=94.6

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHH
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDPAVCQSIN  169 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~-V~v~~r~~~~~e~l~  169 (458)
                      ++-...++.++.|.|+.      ......+.++.  .++|+|||+|.||..+|.+|...|  ++ |++|+|+....+...
T Consensus       136 R~~~~~~~~~~~g~W~~------~~~~~~~~~l~--g~tvgIIG~G~IG~~vA~~l~~~G--~~~V~~~d~~~~~~~~~~  205 (364)
T 2j6i_A          136 RNFVPAHEQIINHDWEV------AAIAKDAYDIE--GKTIATIGAGRIGYRVLERLVPFN--PKELLYYDYQALPKDAEE  205 (364)
T ss_dssp             TTHHHHHHHHHTTCCCH------HHHHTTCCCST--TCEEEEECCSHHHHHHHHHHGGGC--CSEEEEECSSCCCHHHHH
T ss_pred             hChHHHHHHHHhCCCCc------CcccCCcccCC--CCEEEEECcCHHHHHHHHHHHhCC--CcEEEEECCCccchhHHH
Confidence            45556777888887753      10011233343  579999999999999999999888  87 999998865444444


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~  247 (458)
                      +.|              +....+++++++++|+|++++|.. .+..++ ++..+.++++.++|+++.|-..++ +.+.+.
T Consensus       206 ~~g--------------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~-~aL~~a  270 (364)
T 2j6i_A          206 KVG--------------ARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVA-EDVAAA  270 (364)
T ss_dssp             HTT--------------EEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCH-HHHHHH
T ss_pred             hcC--------------cEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCH-HHHHHH
Confidence            333              334457888899999999999964 566655 446678899999999998755443 334444


Q ss_pred             HHH
Q 012720          248 IPQ  250 (458)
Q Consensus       248 l~~  250 (458)
                      +.+
T Consensus       271 L~~  273 (364)
T 2j6i_A          271 LES  273 (364)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            443

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.99  E-value=1.6e-09  Score=107.23  Aligned_cols=105  Identities=13%  Similarity=0.087  Sum_probs=77.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEE-eCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIA-TTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVi  204 (458)
                      ||||+|||+|.||+++|..|+++|..++|++|||++++++.+..... ...+.     +..+.+ +++. ++++++|+||
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~d~-~~~~~aDvVi   74 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANL-----EAHGNIVINDW-AALADADVVI   74 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS-----SSCCEEEESCG-GGGTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhc-----CCCeEEEeCCH-HHhCCCCEEE
Confidence            47999999999999999999998743589999999988776654210 00011     112333 4677 6689999999


Q ss_pred             EcCcccc--------------------HHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          205 HAMPVQF--------------------SSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       205 laVp~~~--------------------v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|+|...                    +.++++.+.++. ++.+++.++|+++.
T Consensus        75 iav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~  127 (309)
T 1hyh_A           75 STLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV  127 (309)
T ss_dssp             ECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred             EecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence            9999755                    467778887765 56777779997754

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.97  E-value=9.4e-10  Score=110.30  Aligned_cols=131  Identities=11%  Similarity=0.133  Sum_probs=93.3

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++      .  ...+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+... +...+
T Consensus       139 R~~~~~~~~~~~g~W~~------~--~~~~~~l~--g~tvgIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-~~~~~  205 (335)
T 2g76_A          139 RQIPQATASMKDGKWER------K--KFMGTELN--GKTLGILGLGRIGREVATRMQSFG--MKTIGYDPIISP-EVSAS  205 (335)
T ss_dssp             HTHHHHHHHHHTTCCCT------G--GGCBCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSCH-HHHHH
T ss_pred             hchHHHHHHHHcCCCCc------c--CCCCcCCC--cCEEEEEeECHHHHHHHHHHHHCC--CEEEEECCCcch-hhhhh
Confidence            45556777788887753      1  11233443  579999999999999999999877  999999998754 23333


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      .|              +.. .+++++++++|+|++++|.. .++.++ .+..+.++++.++|+++.|-..++ ..+.+.+
T Consensus       206 ~g--------------~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~-~aL~~aL  269 (335)
T 2g76_A          206 FG--------------VQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDE-GALLRAL  269 (335)
T ss_dssp             TT--------------CEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCH-HHHHHHH
T ss_pred             cC--------------cee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCH-HHHHHHH
Confidence            33              122 37888899999999999965 466666 457788999999999998755442 3344444


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       270 ~~  271 (335)
T 2g76_A          270 QS  271 (335)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.97  E-value=5.4e-10  Score=112.68  Aligned_cols=126  Identities=11%  Similarity=0.141  Sum_probs=89.7

Q ss_pred             ccCCcccchhhHHh---hhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHH-hcCCCCeEEEEeCCHHHHH
Q 012720           91 TRDGRDRRKIVKVA---WEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVA-NKKSQLKVYMLMRDPAVCQ  166 (458)
Q Consensus        91 ~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~v~~r~~~~~e  166 (458)
                      ++-...++.++.|.   |++.  +..  ....+.++.  .++|+|||+|.||..+|.+|. ..|  ++|++|+|+++..+
T Consensus       130 R~~~~~~~~~~~g~~~~w~~~--~~~--~~~~~~~l~--g~~vgIIG~G~IG~~vA~~l~~~~G--~~V~~~d~~~~~~~  201 (348)
T 2w2k_A          130 RLASYSERAARTGDPETFNRV--HLE--IGKSAHNPR--GHVLGAVGLGAIQKEIARKAVHGLG--MKLVYYDVAPADAE  201 (348)
T ss_dssp             HTHHHHHHHHTTCCHHHHHHH--HHH--HHTTCCCST--TCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECSSCCCHH
T ss_pred             hChHHHHHHHHcCCCcccccc--ccc--ccccCcCCC--CCEEEEEEECHHHHHHHHHHHHhcC--CEEEEECCCCcchh
Confidence            55566778888887   7430  000  011233444  579999999999999999999 888  99999999875544


Q ss_pred             HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCc
Q 012720          167 SINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       167 ~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      ...+.|              +...++++++++++|+|++++|.. .++.++ .++.+.+++++++|+++.|-..
T Consensus       202 ~~~~~g--------------~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~v  261 (348)
T 2w2k_A          202 TEKALG--------------AERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVI  261 (348)
T ss_dssp             HHHHHT--------------CEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGB
T ss_pred             hHhhcC--------------cEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchh
Confidence            443333              233457888889999999999974 466665 3566778999999999877433

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.95  E-value=2.2e-10  Score=114.35  Aligned_cols=128  Identities=13%  Similarity=0.248  Sum_probs=88.9

Q ss_pred             ccCCcc-cchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720           91 TRDGRD-RRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus        91 ~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      ++-... +|.++.+.|++      ..   .+.++.  .++|||||+|.||..+|.+|...|  ++|++|+|+++..+.+.
T Consensus       111 R~~~~~~~~~~~~~~W~~------~~---~~~~l~--gktvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~  177 (324)
T 3evt_A          111 RGYHAAWLNQRGARQWAL------PM---TTSTLT--GQQLLIYGTGQIGQSLAAKASALG--MHVIGVNTTGHPADHFH  177 (324)
T ss_dssp             TTHHHHHHHHTTTCCSSC------SS---CCCCST--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCCCCTTCS
T ss_pred             hChhHHHHHHHhcCCccc------CC---CCcccc--CCeEEEECcCHHHHHHHHHHHhCC--CEEEEECCCcchhHhHh
Confidence            333344 66666665554      21   233444  579999999999999999999888  99999999864321110


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~  247 (458)
                                      ......+++++++++|+|++++|. ..++.++ .+....+++++++|+++.|-..++ +.+.+.
T Consensus       178 ----------------~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~-~aL~~a  240 (324)
T 3evt_A          178 ----------------ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT-TALMTA  240 (324)
T ss_dssp             ----------------EEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCH-HHHHHH
T ss_pred             ----------------hccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhH-HHHHHH
Confidence                            112235778889999999999995 4566655 456778999999999998866553 333344


Q ss_pred             H
Q 012720          248 I  248 (458)
Q Consensus       248 l  248 (458)
                      +
T Consensus       241 L  241 (324)
T 3evt_A          241 L  241 (324)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.95  E-value=9.6e-10  Score=108.99  Aligned_cols=131  Identities=15%  Similarity=0.195  Sum_probs=92.0

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++      ..  ..+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+++. +...+
T Consensus       116 R~~~~~~~~~~~g~w~~------~~--~~~~~l~--g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~-~~~~~  182 (307)
T 1wwk_A          116 RKIAFADRKMREGVWAK------KE--AMGIELE--GKTIGIIGFGRIGYQVAKIANALG--MNILLYDPYPNE-ERAKE  182 (307)
T ss_dssp             TTHHHHHHHHTTTCCCT------TT--CCBCCCT--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCH-HHHHH
T ss_pred             hCHHHHHHHHHcCCCCc------cC--cCCcccC--CceEEEEccCHHHHHHHHHHHHCC--CEEEEECCCCCh-hhHhh
Confidence            45556677777777753      11  1133343  579999999999999999999888  999999998765 33333


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      .|              +.. .+++++++++|+|++++|.. .++.++ .+..+.+++++++|+++.|-..++ ..+.+.+
T Consensus       183 ~g--------------~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~-~aL~~aL  246 (307)
T 1wwk_A          183 VN--------------GKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDT-NALVKAL  246 (307)
T ss_dssp             TT--------------CEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             cC--------------ccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCH-HHHHHHH
Confidence            33              222 27888889999999999964 355555 356677899999999987744432 3344445


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       247 ~~  248 (307)
T 1wwk_A          247 KE  248 (307)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.94  E-value=6.1e-10  Score=118.40  Aligned_cols=130  Identities=15%  Similarity=0.198  Sum_probs=94.5

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++.     .   +.+.++.  .++|+|||+|.||..+|.+|...|  ++|++||++... +...+
T Consensus       116 R~~~~~~~~~~~g~w~~~-----~---~~~~~l~--g~~vgIIG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~-~~a~~  182 (529)
T 1ygy_A          116 RQIPAADASLREHTWKRS-----S---FSGTEIF--GKTVGVVGLGRIGQLVAQRIAAFG--AYVVAYDPYVSP-ARAAQ  182 (529)
T ss_dssp             TTHHHHHHHHHTTCCCGG-----G---CCBCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTTSCH-HHHHH
T ss_pred             hhhHHHHHHHHhCCCccc-----C---cCccccC--CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEECCCCCh-hHHHh
Confidence            455567778888877641     1   1233443  679999999999999999999888  999999998643 33333


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHHh-hhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLEG-ISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~~-i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      .|              +... ++++++++||+|++|+|.. .+..++.+ +.+.+++++++|++++|-..++ ..+.+.+
T Consensus       183 ~g--------------~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~-~aL~~al  246 (529)
T 1ygy_A          183 LG--------------IELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDE-AALADAI  246 (529)
T ss_dssp             HT--------------CEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCH-HHHHHHH
T ss_pred             cC--------------cEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhH-HHHHHHH
Confidence            33              2233 7888889999999999976 77777754 7778999999999998866543 2333444


Q ss_pred             H
Q 012720          249 P  249 (458)
Q Consensus       249 ~  249 (458)
                      .
T Consensus       247 ~  247 (529)
T 1ygy_A          247 T  247 (529)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.93  E-value=6.4e-10  Score=109.28  Aligned_cols=126  Identities=11%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++.     .|     .++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+++..+    
T Consensus        98 R~~~~~~~~~~~g~w~~~-----~~-----~~l~--g~tvGIIGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~----  159 (290)
T 3gvx_A           98 KNILENNELMKAGIFRQS-----PT-----TLLY--GKALGILGYGGIGRRVAHLAKAFG--MRVIAYTRSSVDQN----  159 (290)
T ss_dssp             TTHHHHHHHHHTTCCCCC-----CC-----CCCT--TCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSCCCTT----
T ss_pred             HhhhhhhhHhhhcccccC-----Cc-----eeee--cchheeeccCchhHHHHHHHHhhC--cEEEEEeccccccc----
Confidence            555667777888877652     11     2232  579999999999999999999988  99999999864211    


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                                     .+...++++++++++|+|++++|. ..++.++ .+..+.+++++++|+++.|-..++ +.+.+.+
T Consensus       160 ---------------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~-~aL~~aL  223 (290)
T 3gvx_A          160 ---------------VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSK-PDMIGFL  223 (290)
T ss_dssp             ---------------CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             ---------------cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCC-cchhhhh
Confidence                           023445889999999999999995 5566655 456788999999999998766553 3444445


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       224 ~~  225 (290)
T 3gvx_A          224 KE  225 (290)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.92  E-value=2.6e-10  Score=113.39  Aligned_cols=128  Identities=12%  Similarity=0.202  Sum_probs=91.3

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.+.|++.          .+.++.  .|+|+|||+|.||..+|.+|...|  ++|++|+|+++..+.+..
T Consensus       115 R~~~~~~~~~~~g~W~~~----------~~~~l~--g~tvGIiG~G~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~  180 (315)
T 3pp8_A          115 RRFDDYQALKNQALWKPL----------PEYTRE--EFSVGIMGAGVLGAKVAESLQAWG--FPLRCWSRSRKSWPGVES  180 (315)
T ss_dssp             TTHHHHHHHHHTTCCCCC----------CCCCST--TCCEEEECCSHHHHHHHHHHHTTT--CCEEEEESSCCCCTTCEE
T ss_pred             hCChHHHHHHHhcccCCC----------CCCCcC--CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCchhhhhhhh
Confidence            455566777777777651          122333  579999999999999999999888  999999998642211000


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                                      .....+++++++++|+|++++|. ..++.++ .+....+++++++|+++.|-..++ +.+.+.+
T Consensus       181 ----------------~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~-~aL~~aL  243 (315)
T 3pp8_A          181 ----------------YVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQE-ADLLAAL  243 (315)
T ss_dssp             ----------------EESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             ----------------hcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhH-HHHHHHH
Confidence                            01114788889999999999995 5677766 566788999999999998866653 3344444


Q ss_pred             H
Q 012720          249 P  249 (458)
Q Consensus       249 ~  249 (458)
                      .
T Consensus       244 ~  244 (315)
T 3pp8_A          244 D  244 (315)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.91  E-value=1.9e-09  Score=109.06  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=89.2

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...+|.++.|.|.    |.... ...+.++.  .++|||||+|.||..+|.+|...|  ++|++|+|+... +...+
T Consensus       147 R~~~~~~~~~r~g~~~----w~~~~-~~~~~~l~--gktvGIIGlG~IG~~vA~~l~~fG--~~V~~~d~~~~~-~~~~~  216 (365)
T 4hy3_A          147 RGIVDADIAFQEGTEL----WGGEG-NASARLIA--GSEIGIVGFGDLGKALRRVLSGFR--ARIRVFDPWLPR-SMLEE  216 (365)
T ss_dssp             HTTTHHHHHHHHTCCC----CSSSS-TTSCCCSS--SSEEEEECCSHHHHHHHHHHTTSC--CEEEEECSSSCH-HHHHH
T ss_pred             hchhHHHHHHHcCCcc----ccccc-cccccccC--CCEEEEecCCcccHHHHHhhhhCC--CEEEEECCCCCH-HHHhh
Confidence            6667778888888642    32211 11244454  579999999999999999998777  999999998532 33333


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .|              +. ..+++++++++|+|++++|. ..++.++ .+....+++++++|+++.|-..++
T Consensus       217 ~g--------------~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          217 NG--------------VE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             TT--------------CE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCH
T ss_pred             cC--------------ee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCH
Confidence            33              22 23788999999999999995 4577666 456788999999999998866553

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.91  E-value=3.9e-10  Score=112.48  Aligned_cols=127  Identities=16%  Similarity=0.235  Sum_probs=91.1

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++.          .+.++.  .++|||||+|.||..+|.+|...|  ++|++|+|+++..+.+  
T Consensus       116 R~~~~~~~~~~~g~W~~~----------~~~~l~--g~tvGIIGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~--  179 (324)
T 3hg7_A          116 RQLPLYREQQKQRLWQSH----------PYQGLK--GRTLLILGTGSIGQHIAHTGKHFG--MKVLGVSRSGRERAGF--  179 (324)
T ss_dssp             TTHHHHHHHHHTTCCCCC----------CCCCST--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCCTTC--
T ss_pred             hChHHHHHHHhhCCCcCC----------CCcccc--cceEEEEEECHHHHHHHHHHHhCC--CEEEEEcCChHHhhhh--
Confidence            555667788888877641          122343  579999999999999999999888  9999999986321100  


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                                    .......+++++++++|+|++++|. ..++.++ .+....+++++++|+++.|-..++ +.+.+.+
T Consensus       180 --------------~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde-~aL~~aL  244 (324)
T 3hg7_A          180 --------------DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE-GDLLTAL  244 (324)
T ss_dssp             --------------SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             --------------hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCH-HHHHHHH
Confidence                          0111235788999999999999995 4566665 346777899999999998866553 2333444

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.90  E-value=9e-10  Score=113.13  Aligned_cols=128  Identities=14%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++      .  ...+.++.  .++|||||+|.||..+|.+|...|  ++|++|||+++.     .
T Consensus       119 R~i~~~~~~~~~g~W~~------~--~~~~~el~--gktlGiIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-----~  181 (404)
T 1sc6_A          119 RGVPEANAKAHRGVGNK------L--AAGSFEAR--GKKLGIIGYGHIGTQLGILAESLG--MYVYFYDIENKL-----P  181 (404)
T ss_dssp             HTHHHHHHHHHHTCCC-------------CCCST--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCC-----C
T ss_pred             hChHHHHHHHHcCCccc------c--CCCccccC--CCEEEEEeECHHHHHHHHHHHHCC--CEEEEEcCCchh-----c
Confidence            45556777888887765      1  11234454  679999999999999999999888  999999997531     0


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      .+             ++....+++++++++|+|++++|.. .++.++ .+....+++++++|+++.|-..++ +.+.+.+
T Consensus       182 ~~-------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~-~aL~~aL  247 (404)
T 1sc6_A          182 LG-------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI-PALADAL  247 (404)
T ss_dssp             CT-------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCH-HHHHHHH
T ss_pred             cC-------------CceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhH-HHHHHHH
Confidence            01             1334558889999999999999964 566666 456678999999999998865543 3334444


Q ss_pred             H
Q 012720          249 P  249 (458)
Q Consensus       249 ~  249 (458)
                      .
T Consensus       248 ~  248 (404)
T 1sc6_A          248 A  248 (404)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.89  E-value=2.8e-09  Score=105.94  Aligned_cols=106  Identities=23%  Similarity=0.318  Sum_probs=77.8

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      |...|||+|||+|.||+++|..|+.+|  + +|++||+++++++.....  ... .+   ...+..+..+++. ++++++
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g--~~~V~l~D~~~~~~~~~~~~l~~~~-~~---~~~~~~i~~t~d~-~a~~~a   73 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDN--LADVVLFDIAEGIPQGKALDITHSM-VM---FGSTSKVIGTDDY-ADISGS   73 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHHHHHHHHHH-HH---HTCCCCEEEESCG-GGGTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCchHHHHHHHHHHhhh-hh---cCCCcEEEECCCH-HHhCCC
Confidence            344689999999999999999999999  7 999999998776653211  000 00   0112346777787 678999


Q ss_pred             CEEEEcC--------------cc--ccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAM--------------PV--QFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaV--------------p~--~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+||+++              +.  ..+.++++++.++. ++++++..+|+..
T Consensus        74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~~  125 (317)
T 2ewd_A           74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPLD  125 (317)
T ss_dssp             SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChHH
Confidence            9999999              32  34677888888875 4888988998654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.88  E-value=1.7e-09  Score=107.40  Aligned_cols=119  Identities=11%  Similarity=0.068  Sum_probs=86.9

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...+|.++.|.|+.          ..+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+++.. ...+
T Consensus       118 R~~~~~~~~~~~g~w~~----------~~~~~l~--g~~vgIIG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~-~~~~  182 (313)
T 2ekl_A          118 RKMYTSMALAKSGIFKK----------IEGLELA--GKTIGIVGFGRIGTKVGIIANAMG--MKVLAYDILDIRE-KAEK  182 (313)
T ss_dssp             HTHHHHHHHHHTTCCCC----------CCCCCCT--TCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSCCHH-HHHH
T ss_pred             hCHHHHHHHHHcCCCCC----------CCCCCCC--CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCCcchh-HHHh
Confidence            45556777778776641          1123343  579999999999999999999888  9999999987654 2333


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcccc-HHHHH-HhhhhcCCCCCeEEEeccCCCcc
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQF-SSSFL-EGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~~-v~~vl-~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      .|              +.. .+++++++++|+|++++|... +..++ ++..+.+++++++|+++.|-..+
T Consensus       183 ~g--------------~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd  238 (313)
T 2ekl_A          183 IN--------------AKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVN  238 (313)
T ss_dssp             TT--------------CEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBC
T ss_pred             cC--------------cee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccC
Confidence            33              222 378888899999999999643 55555 44567788999999998774443

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.88  E-value=1.7e-09  Score=108.45  Aligned_cols=130  Identities=12%  Similarity=0.131  Sum_probs=91.3

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...+|.++.|.|.    |    ....+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+.+..  +.+
T Consensus       120 R~~~~~~~~~~~g~w~----~----~~~~~~~l~--g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~--~~~  185 (333)
T 1j4a_A          120 RQDKAMDEKVARHDLR----W----APTIGREVR--DQVVGVVGTGHIGQVFMQIMEGFG--AKVITYDIFRNPE--LEK  185 (333)
T ss_dssp             HTHHHHHHHHHTTBCC----C----TTCCBCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCHH--HHH
T ss_pred             cCHHHHHHHHHcCCCc----c----CCcccccCC--CCEEEEEccCHHHHHHHHHHHHCC--CEEEEECCCcchh--HHh
Confidence            4555667777777663    3    222344454  579999999999999999999888  9999999987653  221


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                       ..              ...++++++++++|+|++++|.. .++.++ ++..+.+++++++|+++.|-..++ +.+.+.+
T Consensus       186 -~~--------------~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~-~aL~~aL  249 (333)
T 1j4a_A          186 -KG--------------YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDT-DAVIRGL  249 (333)
T ss_dssp             -TT--------------CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             -hC--------------eecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCH-HHHHHHH
Confidence             11              11236788889999999999964 466655 345677899999999998755443 3444444


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       250 ~~  251 (333)
T 1j4a_A          250 DS  251 (333)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.88  E-value=1.4e-09  Score=111.68  Aligned_cols=128  Identities=14%  Similarity=0.196  Sum_probs=90.5

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.+++|.|++..        ..+.++.  .++|||||+|.||..+|.++...|  ++|++||+++...    .
T Consensus       130 R~i~~~~~~~~~g~W~~~~--------~~~~el~--gktvGIIGlG~IG~~vA~~l~~~G--~~V~~yd~~~~~~----~  193 (416)
T 3k5p_A          130 RRIFPRSVSAHAGGWEKTA--------IGSREVR--GKTLGIVGYGNIGSQVGNLAESLG--MTVRYYDTSDKLQ----Y  193 (416)
T ss_dssp             TTHHHHHHHHHTTCCCCCC--------TTCCCST--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCCCC----B
T ss_pred             cccHHHHHhhhcccccccC--------CCCccCC--CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCcchhc----c
Confidence            5556677778888776611        1233444  679999999999999999999888  9999999874210    0


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                                    .+.....+++++++++|+|++++|. ..++.++ .+....++++.++|+++.|-..++ +.+.+.+
T Consensus       194 --------------~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~-~aL~~aL  258 (416)
T 3k5p_A          194 --------------GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDL-EALAKVL  258 (416)
T ss_dssp             --------------TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCH-HHHHHHH
T ss_pred             --------------cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhH-HHHHHHH
Confidence                          0123456899999999999999996 4466655 456677899999999998866653 3344444


Q ss_pred             H
Q 012720          249 P  249 (458)
Q Consensus       249 ~  249 (458)
                      .
T Consensus       259 ~  259 (416)
T 3k5p_A          259 Q  259 (416)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.87  E-value=1.7e-09  Score=109.02  Aligned_cols=137  Identities=10%  Similarity=0.090  Sum_probs=92.4

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhcc-cc-chhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSK-AK-TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l  168 (458)
                      ++-...++.++.|.|...  + ..+... .+ .++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+.+.. ..
T Consensus       135 R~~~~~~~~~~~g~w~~~--~-~~~~~~~~~~~~l~--g~tvGIIG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~-~~  206 (347)
T 1mx3_A          135 RRATWLHQALREGTRVQS--V-EQIREVASGAARIR--GETLGIIGLGRVGQAVALRAKAFG--FNVLFYDPYLSDG-VE  206 (347)
T ss_dssp             HCHHHHHHHHHTTCCCCS--H-HHHHHHTTTCCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTTSCTT-HH
T ss_pred             HhHHHHHHHHHcCCcccc--c-ccccccccCccCCC--CCEEEEEeECHHHHHHHHHHHHCC--CEEEEECCCcchh-hH
Confidence            444566777777777420  0 011110 11 2333  579999999999999999999888  9999999876431 11


Q ss_pred             HhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHH
Q 012720          169 NEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQ  246 (458)
Q Consensus       169 ~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e  246 (458)
                      ...|              +....+++++++++|+|++++|.. .++.++ ++..+.+++++++|+++.|-..++ +.+.+
T Consensus       207 ~~~g--------------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~-~aL~~  271 (347)
T 1mx3_A          207 RALG--------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDE-KALAQ  271 (347)
T ss_dssp             HHHT--------------CEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCH-HHHHH
T ss_pred             hhcC--------------CeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhH-HHHHH
Confidence            2222              233447888889999999999964 566666 556678899999999998755543 34445


Q ss_pred             HHHH
Q 012720          247 IIPQ  250 (458)
Q Consensus       247 ~l~~  250 (458)
                      .+.+
T Consensus       272 aL~~  275 (347)
T 1mx3_A          272 ALKE  275 (347)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5544

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.85  E-value=5.9e-08  Score=106.63  Aligned_cols=169  Identities=16%  Similarity=0.177  Sum_probs=113.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc---C----CCccC-CCCCCCCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH---C----NCRYF-PEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g---~----~~~~~-~~~~l~~~i~a~~~~~ea~~  198 (458)
                      .+||+|||+|.||..||..++.+|  ++|+++|++++.++...+.-   +    ..... ........+..+++.++ ++
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  392 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LS  392 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GG
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCC--CchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-Hh
Confidence            479999999999999999999999  99999999997655332210   0    00000 11122235677778765 78


Q ss_pred             CCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHHhcc
Q 012720          199 GADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALELMNK  274 (458)
Q Consensus       199 ~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei~~g  274 (458)
                      +||+||-+|+.  .-..+++.++.+++++++++.+.+.++...       .+.+....+ ..+.  -...|....     
T Consensus       393 ~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~-------~ia~~~~~p-~r~ig~HFfnP~~~m-----  459 (742)
T 3zwc_A          393 TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD-------DIASSTDRP-QLVIGTHFFSPAHVM-----  459 (742)
T ss_dssp             SCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH-------HHHTTSSCG-GGEEEEECCSSTTTC-----
T ss_pred             hCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChH-------HHHhhcCCc-cccccccccCCCCCC-----
Confidence            99999999996  347788899999999999998888777764       233333322 1122  223343221     


Q ss_pred             CCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCChHH
Q 012720          275 LPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSDVTG  311 (458)
Q Consensus       275 ~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~di~~  311 (458)
                      ....++.+. -+++.++.+..+.+..|...+...|..|
T Consensus       460 ~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG  497 (742)
T 3zwc_A          460 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG  497 (742)
T ss_dssp             CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCSTT
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCC
Confidence            111222232 3678999999999999988877777543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.84  E-value=1.5e-09  Score=107.38  Aligned_cols=126  Identities=19%  Similarity=0.206  Sum_probs=90.0

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|+..      .   ...++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+.+  +.   
T Consensus        99 R~~~~~~~~~~~g~w~~~------~---~~~~l~--g~~vgIIG~G~IG~~~A~~l~~~G--~~V~~~dr~~~--~~---  160 (303)
T 1qp8_A           99 KRIIQYGEKMKRGDYGRD------V---EIPLIQ--GEKVAVLGLGEIGTRVGKILAALG--AQVRGFSRTPK--EG---  160 (303)
T ss_dssp             TTHHHHHHHHHTTCCCCC------S---CCCCCT--TCEEEEESCSTHHHHHHHHHHHTT--CEEEEECSSCC--CS---
T ss_pred             hCHHHHHHHHHcCCCCCC------C---CCCCCC--CCEEEEEccCHHHHHHHHHHHHCC--CEEEEECCCcc--cc---
Confidence            555667778888877541      0   011233  579999999999999999999888  99999999864  11   


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHH-hhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-GISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~-~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                       +.              ....+++++++++|+|++++|.. .+..++. +..+.+++++++|+++.|-..++ ..+.+.+
T Consensus       161 -~~--------------~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~-~aL~~aL  224 (303)
T 1qp8_A          161 -PW--------------RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR-DGVLRIL  224 (303)
T ss_dssp             -SS--------------CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH-HHHHHHH
T ss_pred             -Cc--------------ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCH-HHHHHHH
Confidence             11              11236788899999999999965 5666663 57788999999999998754432 3344444


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       225 ~~  226 (303)
T 1qp8_A          225 KE  226 (303)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.82  E-value=1.1e-08  Score=101.73  Aligned_cols=100  Identities=19%  Similarity=0.252  Sum_probs=74.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhh---cCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEK---HCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~~~~~e~l~~~---g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |||+|||+|.||+++|..|+++|  +  +|++||+++++++.+...   +..  +.    .+..+.. ++. ++++++|+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g--~~~~V~l~D~~~~~~~~~~~~l~~~~~--~~----~~~~i~~-~d~-~~~~~aDv   70 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKG--FAREMVLIDVDKKRAEGDALDLIHGTP--FT----RRANIYA-GDY-ADLKGSDV   70 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT--CCSEEEEECSSHHHHHHHHHHHHHHGG--GS----CCCEEEE-CCG-GGGTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEeCChHHHHHHHHHHHhhhh--hc----CCcEEEe-CCH-HHhCCCCE
Confidence            68999999999999999999999  7  999999999877765431   111  11    1123444 354 56799999


Q ss_pred             EEEcCcccc----------------HHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          203 CLHAMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       203 VilaVp~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      ||+|+|...                +.++++.+.++. +++++|.++|+++.
T Consensus        71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~  121 (319)
T 1a5z_A           71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDV  121 (319)
T ss_dssp             EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHH
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHH
Confidence            999999643                467777777774 67788888987654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.80  E-value=1.3e-08  Score=101.83  Aligned_cols=104  Identities=21%  Similarity=0.235  Sum_probs=77.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINE--KHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .|||+|||+|.||+++|..|+..|  + +|++||+++++++....  .+.. .++   ..+.++.+++|++++++++|+|
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g--~~~V~L~D~~~~~~~~~~~~l~~~~-~~~---~~~~~i~~t~d~~ea~~~aDiV   82 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRE--LADVVLYDVVKGMPEGKALDLSHVT-SVV---DTNVSVRAEYSYEAALTGADCV   82 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSHHHHHHHHHHHHH-HHT---TCCCCEEEECSHHHHHTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECChhHHHHHHHHHHhhh-hcc---CCCCEEEEeCCHHHHhCCCCEE
Confidence            479999999999999999999998  7 99999999877665221  1110 111   1244678888998789999999


Q ss_pred             EEcC--ccc--c-----------------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          204 LHAM--PVQ--F-----------------SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       204 ilaV--p~~--~-----------------v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+++  |..  .                 +.++++.+.++. ++.+++..+|..+
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~  136 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLD  136 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchH
Confidence            9998  521  1                 566777777776 6778877787543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.80  E-value=5.2e-09  Score=105.11  Aligned_cols=130  Identities=18%  Similarity=0.214  Sum_probs=90.5

Q ss_pred             ccCCcccchhh-HHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720           91 TRDGRDRRKIV-KVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus        91 ~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      ++-...++.++ .|.|    +|..   ...+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+.+.  .. 
T Consensus       120 R~~~~~~~~~~~~g~~----~w~~---~~~~~~l~--gktvgIiGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~--~~-  185 (343)
T 2yq5_A          120 RKIGEFRYRMDHDHDF----TWPS---NLISNEIY--NLTVGLIGVGHIGSAVAEIFSAMG--AKVIAYDVAYNP--EF-  185 (343)
T ss_dssp             HTHHHHHHHHHHHCCC----CCCG---GGCBCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCG--GG-
T ss_pred             hchHHHHHHHHHcCCc----cccc---CCCccccC--CCeEEEEecCHHHHHHHHHHhhCC--CEEEEECCChhh--hh-
Confidence            45556667666 6655    2322   12344554  579999999999999999999888  999999998643  11 


Q ss_pred             hhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHH
Q 012720          170 EKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQI  247 (458)
Q Consensus       170 ~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~  247 (458)
                      +.              .+.. .+++++++++|+|++++|. ..+..++ .+....+++++++|+++.|-..++ +.+.+.
T Consensus       186 ~~--------------~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~-~aL~~a  249 (343)
T 2yq5_A          186 EP--------------FLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDT-GALIKA  249 (343)
T ss_dssp             TT--------------TCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCH-HHHHHH
T ss_pred             hc--------------cccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhH-HHHHHH
Confidence            11              1122 2888999999999999995 4455555 345677899999999998866553 334444


Q ss_pred             HHH
Q 012720          248 IPQ  250 (458)
Q Consensus       248 l~~  250 (458)
                      +.+
T Consensus       250 L~~  252 (343)
T 2yq5_A          250 LQD  252 (343)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            433

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.80  E-value=3.5e-09  Score=105.16  Aligned_cols=119  Identities=16%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|++   |.+.+  ..+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+.+..+    
T Consensus       115 R~~~~~~~~~~~g~w~~---~~~~~--~~~~~l~--g~~vgIIG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~~----  181 (311)
T 2cuk_A          115 RRVVEGAAYARDGLWKA---WHPEL--LLGLDLQ--GLTLGLVGMGRIGQAVAKRALAFG--MRVVYHARTPKPLP----  181 (311)
T ss_dssp             TTHHHHHHHHHTTCCCC---CCTTT--TCBCCCT--TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSSS----
T ss_pred             cChHHHHHHHHcCCCCc---ccccc--ccCcCCC--CCEEEEEEECHHHHHHHHHHHHCC--CEEEEECCCCcccc----
Confidence            55667788888888854   32211  1133343  579999999999999999999888  99999999864321    


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHHH-hhhhcCCCCCeEEEeccCCCcc
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFLE-GISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl~-~i~~~l~~~~ivV~~snGi~~~  239 (458)
                                      +. ..+++++++++|+|++++|.. .+..++. +..+.+++++++|+++.|-..+
T Consensus       182 ----------------~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd  235 (311)
T 2cuk_A          182 ----------------YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVD  235 (311)
T ss_dssp             ----------------SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBC
T ss_pred             ----------------cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccC
Confidence                            00 237788889999999999975 4666663 4567789999999999765443

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.77  E-value=1.6e-08  Score=101.09  Aligned_cols=102  Identities=24%  Similarity=0.417  Sum_probs=74.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      +|||+|||+|.||+++|..|+.+|  + +|++||+++++++.....  +... +.   ..+..+..++|. +++++||+|
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g--~~~V~L~Di~~~~l~~~~~~l~~~~~-~~---~~~~~i~~t~d~-~al~~aD~V   86 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKD--LGDVYMFDIIEGVPQGKALDLNHCMA-LI---GSPAKIFGENNY-EYLQNSDVV   86 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSTTHHHHHHHHHHHHHH-HH---TCCCCEEEESCG-GGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHhHhh-cc---CCCCEEEECCCH-HHHCCCCEE
Confidence            479999999999999999999998  7 999999998877642211  1000 00   123457787888 678999999


Q ss_pred             EEcC--cc--------------ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          204 LHAM--PV--------------QFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       204 ilaV--p~--------------~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |+++  |.              ..+.++++++.++. ++.+++..+|.+
T Consensus        87 I~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~  134 (328)
T 2hjr_A           87 IITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPL  134 (328)
T ss_dssp             EECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             EEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCch
Confidence            9998  32              11566677777776 677777778754

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.76  E-value=6e-09  Score=104.39  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=87.5

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|.    |.   ....+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+.+..  + +
T Consensus       118 R~~~~~~~~~~~g~w~----~~---~~~~~~~l~--g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~--~-~  183 (333)
T 1dxy_A          118 RNMGKVQAQLQAGDYE----KA---GTFIGKELG--QQTVGVMGTGHIGQVAIKLFKGFG--AKVIAYDPYPMKG--D-H  183 (333)
T ss_dssp             TTHHHHHHHHHTTCHH----HH---TCCCCCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSS--C-C
T ss_pred             hhHHHHHHHHHcCCcc----cc---cCCCccCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCcchh--h-H
Confidence            5556777888888773    21   112244454  579999999999999999999888  9999999986421  1 1


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcc
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      .              .+.. .+++++++++|+|++++|.. .+..++ .+....++++.++|+++.|-..+
T Consensus       184 ~--------------~~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  239 (333)
T 1dxy_A          184 P--------------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLID  239 (333)
T ss_dssp             T--------------TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBC
T ss_pred             h--------------cccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccC
Confidence            0              0122 37888889999999999964 466655 45667789999999999875544

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.74  E-value=2.3e-08  Score=104.54  Aligned_cols=80  Identities=16%  Similarity=0.227  Sum_probs=60.9

Q ss_pred             CCCeEEEECcchH--HHHHHHHHHhc----CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          126 RTNKVVVLGGGSF--GTAMAAHVANK----KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       126 ~~~kI~IIGaG~m--G~~iA~~La~a----G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      ++|||+|||+|.|  |.++|..|++.    |  ++|++||+++++++.+....  ..+++....+.++.+++|.++++++
T Consensus         2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~--~eV~L~Di~~e~l~~~~~~~--~~~l~~~~~~~~I~~ttD~~eal~d   77 (480)
T 1obb_A            2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSG--STVTLMDIDEERLDAILTIA--KKYVEEVGADLKFEKTMNLDDVIID   77 (480)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTT--CEEEEECSCHHHHHHHHHHH--HHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCcCCC--CEEEEEeCCHHHHHHHHHHH--HHHhccCCCCcEEEEECCHHHHhCC
Confidence            3579999999996  56667788754    5  89999999998877655432  1222223346678888999888999


Q ss_pred             CCEEEEcCcc
Q 012720          200 ADYCLHAMPV  209 (458)
Q Consensus       200 aDiVilaVp~  209 (458)
                      ||+||++++.
T Consensus        78 AD~VIiaagv   87 (480)
T 1obb_A           78 ADFVINTAMV   87 (480)
T ss_dssp             CSEEEECCCT
T ss_pred             CCEEEECCCc
Confidence            9999999975

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.74  E-value=1.9e-08  Score=99.76  Aligned_cols=96  Identities=16%  Similarity=0.240  Sum_probs=73.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||+|.||..++..|.+. |. .+|.+|+|++++++.+.+....           .+...++++++++++|+|++
T Consensus       135 ~~~igiIG~G~~g~~~a~~l~~~~g~-~~V~v~dr~~~~~~~l~~~~~~-----------~~~~~~~~~e~v~~aDiVi~  202 (312)
T 2i99_A          135 SEVLCILGAGVQAYSHYEIFTEQFSF-KEVRIWNRTKENAEKFADTVQG-----------EVRVCSSVQEAVAGADVIIT  202 (312)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCC-SEEEEECSSHHHHHHHHHHSSS-----------CCEECSSHHHHHTTCSEEEE
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHhhC-----------CeEEeCCHHHHHhcCCEEEE
Confidence            57999999999999999999887 61 4899999999998888764210           14566788898999999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      |+|+.  ..++..  +.+++|++|++++ +..++
T Consensus       203 atp~~--~~v~~~--~~l~~g~~vi~~g-~~~p~  231 (312)
T 2i99_A          203 VTLAT--EPILFG--EWVKPGAHINAVG-ASRPD  231 (312)
T ss_dssp             CCCCS--SCCBCG--GGSCTTCEEEECC-CCSTT
T ss_pred             EeCCC--CcccCH--HHcCCCcEEEeCC-CCCCC
Confidence            99953  222222  5678899998876 34443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.73  E-value=2.2e-08  Score=99.28  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=73.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.||+++|..|+.++.+++|++||+++++++.+...-.+..  .....+..+..++|.++ ++++|+||+++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~--~~~~~~~~i~~t~d~~~-l~~aDvViiav   77 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESG--PVGLFDTKVTGSNDYAD-TANSDIVIITA   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTH--HHHTCCCEEEEESCGGG-GTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhh--hcccCCcEEEECCCHHH-HCCCCEEEEeC
Confidence            6999999999999999999986323999999999887775532100000  00011234677788876 89999999999


Q ss_pred             cccc----------------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          208 PVQF----------------SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       208 p~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |...                +.++.+.+.++. ++..++..+|.++
T Consensus        78 ~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~~  122 (310)
T 1guz_A           78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPLD  122 (310)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchH
Confidence            7521                245556666664 5677777887654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.73  E-value=3.9e-08  Score=97.17  Aligned_cols=102  Identities=18%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|||+|.||+++|..|+.+|  +  +|++||+++++++.....-....  + ...+..+.. ++. ++++++|+||+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g--~~~eV~L~D~~~~~~~~~~~~l~~~~--~-~~~~~~i~~-~~~-~a~~~aDvVIi   73 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRG--SCSELVLVDRDEDRAQAEAEDIAHAA--P-VSHGTRVWH-GGH-SELADAQVVIL   73 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSHHHHHHHHHHHTTSC--C-TTSCCEEEE-ECG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCCHHHHHHHHHhhhhhh--h-hcCCeEEEE-CCH-HHhCCCCEEEE
Confidence            69999999999999999999998  7  99999999876654322111100  0 001122333 454 56899999999


Q ss_pred             cCcccc----------------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +++...                +.++++.+.++ .++.+++..+|+.+
T Consensus        74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~  120 (304)
T 2v6b_A           74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD  120 (304)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred             cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence            996432                36677777777 47788887888764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.73  E-value=5.6e-08  Score=83.39  Aligned_cols=97  Identities=10%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCH---Hh-hcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDA---KT-ALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aD  201 (458)
                      .|+|+|+|+|.+|..+|..|.+.|  ++|++++++++.++.+.+. +... +..+         ..+.   .+ .+.++|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~~~~~~-~~~d---------~~~~~~l~~~~~~~~d   71 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEIDALV-INGD---------CTKIKTLEDAGIEDAD   71 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCSSEE-EESC---------TTSHHHHHHTTTTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHhcCcEE-EEcC---------CCCHHHHHHcCcccCC
Confidence            479999999999999999999998  9999999999888877653 3210 0000         0122   11 257899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +||+|+|.......+..+.+.++++.+|+ .+++.
T Consensus        72 ~vi~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~  105 (140)
T 1lss_A           72 MYIAVTGKEEVNLMSSLLAKSYGINKTIA-RISEI  105 (140)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCCCEEE-ECSST
T ss_pred             EEEEeeCCchHHHHHHHHHHHcCCCEEEE-EecCH
Confidence            99999998765555555555566665554 44443

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.73  E-value=1.3e-08  Score=106.38  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=78.7

Q ss_pred             CCeEEEECcchH-HHHHHHHHHhc--CC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGGGSF-GTAMAAHVANK--KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~m-G~~iA~~La~a--G~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      +|||+|||+|++ |.++|..|+..  +. .++|.+||+++++++.+....  ..+++....+..+.+++|.++++++||+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~--~~~l~~~~~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGAC--DVFIREKAPDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHH--HHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHH--HHHhccCCCCCEEEEECCHHHHHcCCCE
Confidence            469999999998 66788888887  32 279999999998877765422  1232333456678888899888999999


Q ss_pred             EEEcCcccc------------------------------------HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQF------------------------------------SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~~------------------------------------v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ||++++...                                    +.++++++.++. |+.+++..+|-++
T Consensus       106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvd  175 (472)
T 1u8x_X          106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA  175 (472)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH
T ss_pred             EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH
Confidence            999998732                                    344555566554 6788888888553

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.71  E-value=3.8e-08  Score=98.13  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=74.6

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |+.+|||+|||+|.||..+|..|+..|  + +|.++|+++++++.....-...  ......+..+..++|. +++++||+
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g--~~~v~L~Di~~~~l~~~~~~l~~~--~~~~~~~~~i~~t~d~-~al~~aD~   75 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKN--LGDVVLFDIVKNMPHGKALDTSHT--NVMAYSNCKVSGSNTY-DDLAGADV   75 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSHHHHHHHHHHTH--HHHHTCCCCEEEECCG-GGGTTCSE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHhh--hhhcCCCcEEEECCCH-HHhCCCCE
Confidence            445689999999999999999999998  6 8999999987765432211000  0000113357777888 67899999


Q ss_pred             EEEcC--ccc-------------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          203 CLHAM--PVQ-------------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       203 VilaV--p~~-------------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ||+++  |..                   .+.++++++.++. ++.+++..+|..
T Consensus        76 Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~  129 (322)
T 1t2d_A           76 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPV  129 (322)
T ss_dssp             EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred             EEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCCh
Confidence            99998  421                   2556667777776 677777778744

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.71  E-value=1.3e-08  Score=101.85  Aligned_cols=130  Identities=12%  Similarity=0.080  Sum_probs=90.1

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.|.|.    |.   ....+.++.  .++|+|||+|.||..+|.+|...|  ++|++|+|+.+..  + +
T Consensus       119 R~~~~~~~~~~~g~w~----~~---~~~~~~~l~--g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~d~~~~~~--~-~  184 (331)
T 1xdw_A          119 RHTAYTTSRTAKKNFK----VD---AFMFSKEVR--NCTVGVVGLGRIGRVAAQIFHGMG--ATVIGEDVFEIKG--I-E  184 (331)
T ss_dssp             TTHHHHHHHHTTTCCC----CC---STTCCCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCS--C-T
T ss_pred             hCHHHHHHHHHcCCCc----cc---cCcCccCCC--CCEEEEECcCHHHHHHHHHHHHCC--CEEEEECCCccHH--H-H
Confidence            5555677777777663    21   112234444  579999999999999999999888  9999999986421  1 1


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCccc-cHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPVQ-FSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~~-~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      ..              +. ..+++++++++|+|++++|.. .++.++ .+..+.+++++++|+++.|-..++ +.+.+.+
T Consensus       185 ~~--------------~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~-~aL~~aL  248 (331)
T 1xdw_A          185 DY--------------CT-QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDT-EAVIEAV  248 (331)
T ss_dssp             TT--------------CE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCH-HHHHHHH
T ss_pred             hc--------------cc-cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccH-HHHHHHH
Confidence            00              12 237888889999999999963 455555 356677899999999998755543 3344444


Q ss_pred             HH
Q 012720          249 PQ  250 (458)
Q Consensus       249 ~~  250 (458)
                      .+
T Consensus       249 ~~  250 (331)
T 1xdw_A          249 ES  250 (331)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.66  E-value=2.4e-08  Score=87.32  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=71.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.||..++..|.+.|  ++|++|+|++++++.+.+...           ..+...++..++++++|+||.|
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~Divi~a   87 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRNIDHVRAFAEKYE-----------YEYVLINDIDSLIKNNDVIITA   87 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESCHHHHHHHHHHHT-----------CEEEECSCHHHHHHTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCHHHHHHHHHHhC-----------CceEeecCHHHHhcCCCEEEEe
Confidence            579999999999999999999888  789999999998887765421           0133456788888999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +|....  ++  -...++++.+++++...
T Consensus        88 t~~~~~--~~--~~~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           88 TSSKTP--IV--EERSLMPGKLFIDLGNP  112 (144)
T ss_dssp             SCCSSC--SB--CGGGCCTTCEEEECCSS
T ss_pred             CCCCCc--Ee--eHHHcCCCCEEEEccCC
Confidence            997531  11  12556788999988753

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.65  E-value=3.8e-08  Score=95.82  Aligned_cols=93  Identities=13%  Similarity=0.184  Sum_probs=71.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||.+++..|.+.|  ++|++|+|++++++.+.+..             ++.+.++++++++++|+||.|
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g--~~V~v~~r~~~~~~~l~~~~-------------g~~~~~~~~~~~~~aDiVi~a  193 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEG--AKVFLWNRTKEKAIKLAQKF-------------PLEVVNSPEEVIDKVQVIVNT  193 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSHHHHHHHTTTS-------------CEEECSCGGGTGGGCSEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHc-------------CCeeehhHHhhhcCCCEEEEe
Confidence            579999999999999999999999  79999999998887776431             234455777778899999999


Q ss_pred             CccccHHHHHHhh-hhcCCCCCeEEEecc
Q 012720          207 MPVQFSSSFLEGI-SDYVDPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~v~~vl~~i-~~~l~~~~ivV~~sn  234 (458)
                      +|.....++...+ ...++++++|+++..
T Consensus       194 tp~~~~~~~~~~i~~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          194 TSVGLKDEDPEIFNYDLIKKDHVVVDIIY  222 (275)
T ss_dssp             SSTTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred             CCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            9976432111112 356788999999885

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.60  E-value=1.8e-07  Score=91.99  Aligned_cols=101  Identities=11%  Similarity=0.167  Sum_probs=71.2

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHH--HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQS--INEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~~~~~e~--l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |||+|||+|.||.++|..|+.+|  +  +|.+||+++++++.  +.-.+... ++   ..+..+.+++| .++++++|+|
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~--~~~~v~L~D~~~~~~~g~~~dl~~~~~-~~---~~~~~i~~t~d-~~a~~~aDiV   73 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNL--DVDEIALVDIAEDLAVGEAMDLAHAAA-GI---DKYPKIVGGAD-YSLLKGSEII   73 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHHH-TT---TCCCEEEEESC-GGGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEECChHHHHHHHHHHHhhhh-hc---CCCCEEEEeCC-HHHhCCCCEE
Confidence            79999999999999999999998  6  99999999987652  21111111 11   12445777777 6789999999


Q ss_pred             EEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       204 ilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |++....                -++++.+.+.++ .++.+++..+|-+
T Consensus        74 Viaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsNPv  121 (294)
T 1oju_A           74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPM  121 (294)
T ss_dssp             EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSH
T ss_pred             EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCCcc
Confidence            9987532                133444556565 5678888888744

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.58  E-value=6.6e-08  Score=100.55  Aligned_cols=122  Identities=15%  Similarity=0.246  Sum_probs=82.5

Q ss_pred             hhcCCCeEEEECcchH-HHHHHHHHHhc--CC-CCeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012720          123 ILERTNKVVVLGGGSF-GTAMAAHVANK--KS-QLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~m-G~~iA~~La~a--G~-~~~V~v~~r~~--~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      +|.+.|||+|||+|++ |.+++..|+.+  +. .++|.+||+++  ++++.+....  ..+++....+..+.+++|..++
T Consensus         3 ~m~~~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~--~~~~~~~~~~~~i~~t~D~~ea   80 (450)
T 1s6y_A            3 AMDKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA--KRMVEKAGVPIEIHLTLDRRRA   80 (450)
T ss_dssp             ----CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH--HHHHHHTTCCCEEEEESCHHHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHH--HHHHhhcCCCcEEEEeCCHHHH
Confidence            4534579999999999 88888888873  22 27899999999  8877654321  1222223345678888898888


Q ss_pred             cCCCCEEEEcCcccc------------------------------------HHHHHHhhhhcCCCCCeEEEeccCCCcch
Q 012720          197 LLGADYCLHAMPVQF------------------------------------SSSFLEGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       197 ~~~aDiVilaVp~~~------------------------------------v~~vl~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      +++||+||++++...                                    +.++++++.++. |+.+++..+|-++   
T Consensus        81 l~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNPvd---  156 (450)
T 1s6y_A           81 LDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAG---  156 (450)
T ss_dssp             HTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH---
T ss_pred             hCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH---
Confidence            999999999999532                                    345555666654 6788888898553   


Q ss_pred             hhhHHHHHHHHh
Q 012720          241 LRMMSQIIPQAL  252 (458)
Q Consensus       241 ~~~l~e~l~~~l  252 (458)
                        .+.+.+.+..
T Consensus       157 --ivT~a~~k~~  166 (450)
T 1s6y_A          157 --MVTEAVLRYT  166 (450)
T ss_dssp             --HHHHHHHHHC
T ss_pred             --HHHHHHHHhC
Confidence              3445554543

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.58  E-value=3.8e-08  Score=99.91  Aligned_cols=101  Identities=12%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|||||+|.||..+|.+|...|  ++|.+||+..+..    ..+               ....+++++++++|+|+++
T Consensus       119 gktvGIIGlG~IG~~vA~~l~a~G--~~V~~~d~~~~~~----~~~---------------~~~~sl~ell~~aDiV~l~  177 (381)
T 3oet_A          119 DRTIGIVGVGNVGSRLQTRLEALG--IRTLLCDPPRAAR----GDE---------------GDFRTLDELVQEADVLTFH  177 (381)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTT--CEEEEECHHHHHT----TCC---------------SCBCCHHHHHHHCSEEEEC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCC--CEEEEECCChHHh----ccC---------------cccCCHHHHHhhCCEEEEc
Confidence            579999999999999999999888  9999999854321    111               0124788999999999999


Q ss_pred             Cccc-c----HHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHH
Q 012720          207 MPVQ-F----SSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIP  249 (458)
Q Consensus       207 Vp~~-~----v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~  249 (458)
                      +|.. .    +..++ .+....+++++++|+++.|-..++ +.+.+.+.
T Consensus       178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde-~aL~~aL~  225 (381)
T 3oet_A          178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDN-AALLARLN  225 (381)
T ss_dssp             CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCH-HHHHHHHH
T ss_pred             CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHH
Confidence            9953 3    55555 446677899999999998866553 23334443

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.55  E-value=6.8e-08  Score=98.16  Aligned_cols=101  Identities=17%  Similarity=0.211  Sum_probs=75.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|||||+|+||..+|.+|...|  ++|++|++..+..    ..+.               ...+++++++++|+|+++
T Consensus       116 g~tvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~----~~g~---------------~~~~l~ell~~aDvV~l~  174 (380)
T 2o4c_A          116 ERTYGVVGAGQVGGRLVEVLRGLG--WKVLVCDPPRQAR----EPDG---------------EFVSLERLLAEADVISLH  174 (380)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTT--CEEEEECHHHHHH----STTS---------------CCCCHHHHHHHCSEEEEC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCC--CEEEEEcCChhhh----ccCc---------------ccCCHHHHHHhCCEEEEe
Confidence            579999999999999999999888  9999999876431    1111               113788888999999999


Q ss_pred             Ccccc-----HHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHH
Q 012720          207 MPVQF-----SSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIP  249 (458)
Q Consensus       207 Vp~~~-----v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~  249 (458)
                      +|...     +..++ .++.+.+++++++|+++.|-..++ +.+.+.+.
T Consensus       175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~-~aL~~aL~  222 (380)
T 2o4c_A          175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDN-QALRRLLE  222 (380)
T ss_dssp             CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCH-HHHHHHHH
T ss_pred             ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCH-HHHHHHHH
Confidence            99643     55655 456778899999999998755442 33344443

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=98.55  E-value=7.1e-08  Score=96.57  Aligned_cols=122  Identities=17%  Similarity=0.184  Sum_probs=86.4

Q ss_pred             ccCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720           91 TRDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus        91 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++-...++.++.+.|..       |....+.++.  .++|||||+|.+|..+|.++..-|  .+|..|++....  ...+
T Consensus       114 r~~~~~~~~~~~~~~~~-------~~~~~~~~l~--g~tvGIiG~G~IG~~va~~~~~fg--~~v~~~d~~~~~--~~~~  180 (334)
T 3kb6_A          114 KRLKRIEDRVKKLNFSQ-------DSEILARELN--RLTLGVIGTGRIGSRVAMYGLAFG--MKVLCYDVVKRE--DLKE  180 (334)
T ss_dssp             TTHHHHHHHHHTTCCCC-------CGGGCBCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCH--HHHH
T ss_pred             hcccccccccccccccc-------ccccccceec--CcEEEEECcchHHHHHHHhhcccC--ceeeecCCccch--hhhh
Confidence            33344455555665533       2222344554  579999999999999999998777  999999987542  2222


Q ss_pred             hcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          171 KHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       171 ~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      .+              +. ..+++++++++|+|++++|. ..++.++ .+....++++.++|+++.|-..++
T Consensus       181 ~~--------------~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde  237 (334)
T 3kb6_A          181 KG--------------CV-YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDT  237 (334)
T ss_dssp             TT--------------CE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred             cC--------------ce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccH
Confidence            22              12 23788999999999999995 4566666 345677899999999999876653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.54  E-value=3.3e-07  Score=83.05  Aligned_cols=98  Identities=14%  Similarity=0.061  Sum_probs=66.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh--cCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA--LLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea--~~~aDiV  203 (458)
                      .++|.|+|+|.||..+|..|.+. |  ++|+++++++++++.+.+.|....+ .+..-      .+.+.++  +.++|+|
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~~~~~~~~~g~~~~~-gd~~~------~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREEAAQQHRSEGRNVIS-GDATD------PDFWERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHHHHHHHHHTTCCEEE-CCTTC------HHHHHTBCSCCCCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHHHHHHHHHCCCCEEE-cCCCC------HHHHHhccCCCCCCEE
Confidence            56899999999999999999998 9  9999999999998888776532111 00000      0012333  6789999


Q ss_pred             EEcCcccc-HHHHHHhhhhcCCCCCeEEEecc
Q 012720          204 LHAMPVQF-SSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       204 ilaVp~~~-v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |+|++... ...++. ....+.++..++..++
T Consensus       110 i~~~~~~~~~~~~~~-~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          110 LLAMPHHQGNQTALE-QLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             EECCSSHHHHHHHHH-HHHHTTCCSEEEEEES
T ss_pred             EEeCCChHHHHHHHH-HHHHHCCCCEEEEEEC
Confidence            99999754 333333 3334454556665554

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.54  E-value=3.1e-07  Score=90.41  Aligned_cols=92  Identities=22%  Similarity=0.272  Sum_probs=71.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..+|..|...|  ++|++|+|+.++.+.+.+.|..            .....++++.++++|+|+++
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDvVi~~  222 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALG--ANVKVGARSSAHLARITEMGLV------------PFHTDELKEHVKDIDICINT  222 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCE------------EEEGGGHHHHSTTCSEEEEC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCCe------------EEchhhHHHHhhCCCEEEEC
Confidence            579999999999999999999888  8999999998876666543311            11124677888999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +|...+.+   +....++++.++|+++.|
T Consensus       223 ~p~~~i~~---~~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          223 IPSMILNQ---TVLSSMTPKTLILDLASR  248 (300)
T ss_dssp             CSSCCBCH---HHHTTSCTTCEEEECSST
T ss_pred             CChhhhCH---HHHHhCCCCCEEEEEeCC
Confidence            99743321   234568889999999865

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.53  E-value=3.4e-07  Score=89.78  Aligned_cols=92  Identities=22%  Similarity=0.279  Sum_probs=70.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..+|..|...|  ++|++|+|+.++.+.+.+.|..            .....++++.++++|+|+++
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~~~g~~------------~~~~~~l~~~l~~aDvVi~~  220 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIAEMGME------------PFHISKAAQELRDVDVCINT  220 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTSE------------EEEGGGHHHHTTTCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHCCCe------------ecChhhHHHHhcCCCEEEEC
Confidence            579999999999999999999888  8999999998776665543321            11124677888999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +|...+.+   +....++++.++|+++.|
T Consensus       221 ~p~~~i~~---~~l~~mk~~~~lin~ar~  246 (293)
T 3d4o_A          221 IPALVVTA---NVLAEMPSHTFVIDLASK  246 (293)
T ss_dssp             CSSCCBCH---HHHHHSCTTCEEEECSST
T ss_pred             CChHHhCH---HHHHhcCCCCEEEEecCC
Confidence            99743321   233457889999999864

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.52  E-value=7.5e-07  Score=89.01  Aligned_cols=96  Identities=17%  Similarity=0.269  Sum_probs=70.6

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a  200 (458)
                      |++++||+|||+|.||..++..|.+.. +.+|+ ++++++++++.+.+..             ++..++|.++++.  ++
T Consensus         1 M~~~~rvgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~~~l~~~~~   66 (344)
T 3euw_A            1 MSLTLRIALFGAGRIGHVHAANIAANP-DLELVVIADPFIEGAQRLAEAN-------------GAEAVASPDEVFARDDI   66 (344)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHTT-------------TCEEESSHHHHTTCSCC
T ss_pred             CCCceEEEEECCcHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCC
Confidence            445679999999999999999998863 27766 7899999888776531             1356779999887  89


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+|++|+|.....+++.....   .|..|+ +.|-+.
T Consensus        67 D~V~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~~   99 (344)
T 3euw_A           67 DGIVIGSPTSTHVDLITRAVE---RGIPAL-CEKPID   99 (344)
T ss_dssp             CEEEECSCGGGHHHHHHHHHH---TTCCEE-ECSCSC
T ss_pred             CEEEEeCCchhhHHHHHHHHH---cCCcEE-EECCCC
Confidence            999999999887777665543   344443 444433

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.51  E-value=3.8e-07  Score=80.57  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-hhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN-EKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~-~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVi  204 (458)
                      .++|.|+|+|.+|..++..|.+.|  ++|++++|++++++.++ +.+... +..+..   .   ...+.++ +.++|+||
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~~~~~~~~~g~~~-~~~d~~---~---~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYAFHRLNSEFSGFT-VVGDAA---E---FETLKECGMEKADMVF   89 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGGGGSCTTCCSEE-EESCTT---S---HHHHHTTTGGGCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHhcCCCcE-EEecCC---C---HHHHHHcCcccCCEEE
Confidence            479999999999999999999999  99999999988766554 322110 000000   0   0012222 56899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|++.......+..+...+.+...++..+++..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~  122 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARYMFNVENVIARVYDPE  122 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred             EEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence            999987655555555554445566676666544

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.47  E-value=3.3e-07  Score=91.28  Aligned_cols=105  Identities=21%  Similarity=0.277  Sum_probs=71.7

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      ++|||+|||+|.||.++|..|+..|  + +|.+||+++++++.....-.+...+  ...+..+..++|. +++++||+||
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~--~~~v~L~Di~~~~~~g~~~dl~~~~~~--~~~~~~v~~t~d~-~a~~~aDiVI   80 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKE--LGDVVLFDIAEGTPQGKGLDIAESSPV--DGFDAKFTGANDY-AAIEGADVVI   80 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSHHHHHHHHHHHHHHH--HTCCCCEEEESSG-GGGTTCSEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCchhHHHHHHHHhchhhh--cCCCCEEEEeCCH-HHHCCCCEEE
Confidence            4589999999999999999999998  6 9999999987664222110000000  0123356677787 6789999999


Q ss_pred             EcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          205 HAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       205 laVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++....                .++++.+.+.++. ++.+++..+|-+
T Consensus        81 iaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPv  127 (324)
T 3gvi_A           81 VTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPL  127 (324)
T ss_dssp             ECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             EccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCc
Confidence            997521                1344555666664 677888888754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.46  E-value=1e-06  Score=76.19  Aligned_cols=95  Identities=13%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hhh-cCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KTA-LLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea-~~~aDi  202 (458)
                      +++|.|+|+|.+|..+|..|.+.|  ++|++++++++.++.+.+.+....+ .+.         ++.   +++ +.++|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~~~~~~~~~~~~~~~~-gd~---------~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSKEKIELLEDEGFDAVI-ADP---------TDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHTTCEEEE-CCT---------TCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHCCCcEEE-CCC---------CCHHHHHhCCcccCCE
Confidence            578999999999999999999999  9999999999999888776532111 110         122   221 468999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ||+++++....-.+-.....+....+++...
T Consensus        74 vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~  104 (141)
T 3llv_A           74 VLITGSDDEFNLKILKALRSVSDVYAIVRVS  104 (141)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHCCCCEEEEES
T ss_pred             EEEecCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence            9999996544333333333333334444333

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.44  E-value=1.2e-06  Score=86.54  Aligned_cols=104  Identities=16%  Similarity=0.195  Sum_probs=70.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||+|||+|.||..+|..|+..|  + +|.++|+++++++.....-.....  -...+..+..++|. +++++||+||+
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~~g--~~~v~L~Di~~~~~~g~~~dl~~~~~--~~~~~~~i~~t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAAKE--LGDIVLLDIVEGVPQGKALDLYEASP--IEGFDVRVTGTNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSSSSHHHHHHHHHHTTHH--HHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CCeEEEEeCCccHHHHHHHhHHHhHh--hcCCCeEEEECCCH-HHHCCCCEEEE
Confidence            479999999999999999999998  5 899999998766543221000000  00012346677787 66899999999


Q ss_pred             cCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++...                .+.++++.+.++. ++.+++..+|-+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv  122 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPL  122 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCch
Confidence            98431                1345556666664 677777778744

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.43  E-value=7.6e-07  Score=83.10  Aligned_cols=99  Identities=16%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil  205 (458)
                      |||.|+|+|.+|..+|..|.+.|  ++|++++++++.++.+.+. +.. .+.++..-+      ..+.++ +.++|+||+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~l~~~~~~~-~i~gd~~~~------~~l~~a~i~~ad~vi~   71 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRK--YGVVIINKDRELCEEFAKKLKAT-IIHGDGSHK------EILRDAEVSKNDVVVI   71 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHHSSSE-EEESCTTSH------HHHHHHTCCTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHcCCe-EEEcCCCCH------HHHHhcCcccCCEEEE
Confidence            68999999999999999999999  9999999999998887653 221 111110000      012333 678999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +++++....++..+...+.+...+|...+.
T Consensus        72 ~~~~d~~n~~~~~~a~~~~~~~~iia~~~~  101 (218)
T 3l4b_C           72 LTPRDEVNLFIAQLVMKDFGVKRVVSLVND  101 (218)
T ss_dssp             CCSCHHHHHHHHHHHHHTSCCCEEEECCCS
T ss_pred             ecCCcHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            999877665555555443344556655543

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.43  E-value=8e-07  Score=92.15  Aligned_cols=78  Identities=18%  Similarity=0.102  Sum_probs=60.2

Q ss_pred             CCCeEEEECcchH--HHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLGGGSF--GTAMAAHVANKK-SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIGaG~m--G~~iA~~La~aG-~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      +.|||+|||+|+|  |..++..|+... ...+|++||+++++++.+...+..   +..  .+.++.+++|.++++++||+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~---l~~--~~~~I~~TtD~~eAl~dADf   78 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNH---SGN--GRWRYEAVSTLKKALSAADI   78 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTT---STT--SCEEEEEESSHHHHHTTCSE
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHH---Hhc--cCCeEEEECCHHHHhcCCCE
Confidence            4579999999995  789999988632 112999999999887766553321   222  45578899999999999999


Q ss_pred             EEEcCc
Q 012720          203 CLHAMP  208 (458)
Q Consensus       203 VilaVp  208 (458)
                      ||++++
T Consensus        79 VI~air   84 (450)
T 3fef_A           79 VIISIL   84 (450)
T ss_dssp             EEECCC
T ss_pred             EEeccc
Confidence            999996

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.43  E-value=1.2e-06  Score=76.07  Aligned_cols=95  Identities=11%  Similarity=0.284  Sum_probs=65.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hh-hcCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KT-ALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~aDi  202 (458)
                      .++|.|+|+|.+|..+|..|.+.|  ++|+++++++++++.+.+.|....+ ++.         ++.   ++ .+.++|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~~~~~g~~~i~-gd~---------~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRTRVDELRERGVRAVL-GNA---------ANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHHTTCEEEE-SCT---------TSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHhcCcccCCE
Confidence            468999999999999999999999  9999999999999988876542111 110         122   22 2468999


Q ss_pred             EEEcCccccHH-HHHHhhhhcCCCCCeEEEecc
Q 012720          203 CLHAMPVQFSS-SFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       203 VilaVp~~~v~-~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ||++++..... .++..+.. +.++..+|...+
T Consensus        75 vi~~~~~~~~n~~~~~~a~~-~~~~~~iiar~~  106 (140)
T 3fwz_A           75 LILTIPNGYEAGEIVASARA-KNPDIEIIARAH  106 (140)
T ss_dssp             EEECCSCHHHHHHHHHHHHH-HCSSSEEEEEES
T ss_pred             EEEECCChHHHHHHHHHHHH-HCCCCeEEEEEC
Confidence            99999976533 33333333 334445555554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.42  E-value=5.6e-07  Score=74.66  Aligned_cols=96  Identities=19%  Similarity=0.264  Sum_probs=67.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|+|+|+|+|.||..++..|.+.| .++|++++|++++.+.+...+..... .+      +.-..+..++++++|+||.|
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~~~~~~~~~~~~~~~~~-~d------~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHDLAALAVLNRMGVATKQ-VD------AKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESCHHHHHHHHTTTCEEEE-CC------TTCHHHHHHHTTTCSEEEEC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhCCCcEEE-ec------CCCHHHHHHHHcCCCEEEEC
Confidence            578999999999999999999987 37899999999888877643321100 00      00012344567899999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|......++.....   .+...++++
T Consensus        77 ~~~~~~~~~~~~~~~---~g~~~~~~~  100 (118)
T 3ic5_A           77 APFFLTPIIAKAAKA---AGAHYFDLT  100 (118)
T ss_dssp             SCGGGHHHHHHHHHH---TTCEEECCC
T ss_pred             CCchhhHHHHHHHHH---hCCCEEEec
Confidence            997776666655443   466666666

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.41  E-value=9.2e-07  Score=86.98  Aligned_cols=108  Identities=8%  Similarity=0.104  Sum_probs=74.2

Q ss_pred             cCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          125 ERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |+++||+|||+|.||.. ++..|.+.. +.++. ++++++++++.+.+...             +...+|.++++.++|+
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~~-------------~~~~~~~~~ll~~~D~   69 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSE-RFEFVGAFTPNKVKREKICSDYR-------------IMPFDSIESLAKKCDC   69 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCS-SSEEEEEECSCHHHHHHHHHHHT-------------CCBCSCHHHHHTTCSE
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcC-------------CCCcCCHHHHHhcCCE
Confidence            45689999999999996 888887643 26776 79999998888766421             1124688888889999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc--chhhhHHHHHHH
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQIIPQ  250 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~--~t~~~l~e~l~~  250 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+..  +..+.+.+..++
T Consensus        70 V~i~tp~~~h~~~~~~al~---~gk~vl-~EKP~~~~~~~~~~l~~~a~~  115 (308)
T 3uuw_A           70 IFLHSSTETHYEIIKILLN---LGVHVY-VDKPLASTVSQGEELIELSTK  115 (308)
T ss_dssp             EEECCCGGGHHHHHHHHHH---TTCEEE-ECSSSSSSHHHHHHHHHHHHH
T ss_pred             EEEeCCcHhHHHHHHHHHH---CCCcEE-EcCCCCCCHHHHHHHHHHHHH
Confidence            9999999887777665543   355544 5554443  233334444433

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.41  E-value=2.8e-07  Score=92.87  Aligned_cols=102  Identities=13%  Similarity=0.203  Sum_probs=72.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..++..|.......+|.+|+|++++++++.+....   ..+    ..+...++++++++++|+|++|
T Consensus       129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~---~~g----~~~~~~~~~~eav~~aDiVi~a  201 (350)
T 1x7d_A          129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE---YSG----LTIRRASSVAEAVKGVDIITTV  201 (350)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT---CTT----CEEEECSSHHHHHTTCSEEEEC
T ss_pred             CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh---ccC----ceEEEeCCHHHHHhcCCEEEEe
Confidence            578999999999999998876431127899999999999888764211   001    1245667898999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|+.....++.  ...+++|+.|+.+. +..+
T Consensus       202 Tps~~~~pvl~--~~~l~~G~~V~~vg-s~~p  230 (350)
T 1x7d_A          202 TADKAYATIIT--PDMLEPGMHLNAVG-GDCP  230 (350)
T ss_dssp             CCCSSEEEEEC--GGGCCTTCEEEECS-CCBT
T ss_pred             ccCCCCCceec--HHHcCCCCEEEECC-CCCC
Confidence            99753222221  25678899888876 3444

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.40  E-value=4e-07  Score=79.48  Aligned_cols=110  Identities=10%  Similarity=0.116  Sum_probs=75.8

Q ss_pred             CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +..+|+|||+    |.||..++.+|.+.|  ++|+.++++.+.   +                .++.+..+++|+.+.+|
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G--~~V~~vnp~~~~---i----------------~G~~~~~s~~el~~~vD   71 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKG--FEVLPVNPNYDE---I----------------EGLKCYRSVRELPKDVD   71 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCSE---E----------------TTEECBSSGGGSCTTCC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCC--CEEEEeCCCCCe---E----------------CCeeecCCHHHhCCCCC
Confidence            4578999999    999999999999999  886666665321   1                13456678888778899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~  269 (458)
                      ++++++|...+.++++++.+ ...+.+++..+ +.    .+.+.+..++. |.     . +.||+...
T Consensus        72 lvii~vp~~~v~~v~~~~~~-~g~~~i~~~~~-~~----~~~l~~~a~~~-Gi-----~-~igpnc~g  126 (138)
T 1y81_A           72 VIVFVVPPKVGLQVAKEAVE-AGFKKLWFQPG-AE----SEEIRRFLEKA-GV-----E-YSFGRCIM  126 (138)
T ss_dssp             EEEECSCHHHHHHHHHHHHH-TTCCEEEECTT-SC----CHHHHHHHHHH-TC-----E-EECSCCHH
T ss_pred             EEEEEeCHHHHHHHHHHHHH-cCCCEEEEcCc-cH----HHHHHHHHHHC-CC-----E-EEcCCcce
Confidence            99999999899999988766 44455555433 32    23444555443 42     2 45666543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.40  E-value=1.1e-06  Score=88.07  Aligned_cols=96  Identities=15%  Similarity=0.225  Sum_probs=69.2

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc--CCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--LGA  200 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~--~~a  200 (458)
                      |++++||+|||+|.||..++..|.+.. +++|. ++++++++++.+.+..             ++..++|.++++  .++
T Consensus         2 M~~~~~vgiiG~G~~g~~~~~~l~~~~-~~~lvav~d~~~~~~~~~~~~~-------------g~~~~~~~~~~l~~~~~   67 (354)
T 3db2_A            2 MYNPVGVAAIGLGRWAYVMADAYTKSE-KLKLVTCYSRTEDKREKFGKRY-------------NCAGDATMEALLAREDV   67 (354)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEECSSHHHHHHHHHHH-------------TCCCCSSHHHHHHCSSC
T ss_pred             CCCcceEEEEccCHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHc-------------CCCCcCCHHHHhcCCCC
Confidence            445679999999999999999998762 27755 7899999888776542             122346888887  579


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+|++|+|.....+++.....   .|..|+ +.|-+.
T Consensus        68 D~V~i~tp~~~h~~~~~~al~---~gk~vl-~EKP~~  100 (354)
T 3db2_A           68 EMVIITVPNDKHAEVIEQCAR---SGKHIY-VEKPIS  100 (354)
T ss_dssp             CEEEECSCTTSHHHHHHHHHH---TTCEEE-EESSSC
T ss_pred             CEEEEeCChHHHHHHHHHHHH---cCCEEE-EccCCC
Confidence            999999999877766655443   355444 444443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.39  E-value=4.3e-07  Score=87.57  Aligned_cols=88  Identities=22%  Similarity=0.255  Sum_probs=68.1

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp  208 (458)
                      +|+|||+|.||.+++..|.+.|  ++|++|+|+.++++.+.+...             .. .++++++ +++|+||+|+|
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g--~~v~v~~r~~~~~~~l~~~~~-------------~~-~~~~~~~-~~~Divi~~tp  180 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAG--LEVWVWNRTPQRALALAEEFG-------------LR-AVPLEKA-REARLLVNATR  180 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHT-------------CE-ECCGGGG-GGCSEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhc-------------cc-hhhHhhc-cCCCEEEEccC
Confidence            8999999999999999999998  799999999988877765310             11 2467777 89999999999


Q ss_pred             cccHH---HHHHhhhhcCCCCCeEEEeccC
Q 012720          209 VQFSS---SFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       209 ~~~v~---~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      .....   ..+.  .+.++++++|+++..+
T Consensus       181 ~~~~~~~~~~l~--~~~l~~g~~viD~~~~  208 (263)
T 2d5c_A          181 VGLEDPSASPLP--AELFPEEGAAVDLVYR  208 (263)
T ss_dssp             TTTTCTTCCSSC--GGGSCSSSEEEESCCS
T ss_pred             CCCCCCCCCCCC--HHHcCCCCEEEEeecC
Confidence            76322   2221  4567889999998744

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.38  E-value=1.2e-06  Score=87.09  Aligned_cols=104  Identities=11%  Similarity=0.072  Sum_probs=65.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +|||+|||+|.+|.++|..|+..+.-.+|.++|+++++++.....-.+..     .+...+++..+..+++++||+||++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~-----~~~~~~~i~~~~~~a~~~aDvVii~   81 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGL-----PFMGQMSLYAGDYSDVKDCDVIVVT   81 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSC-----CCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhH-----HhcCCeEEEECCHHHhCCCCEEEEc
Confidence            57999999999999999999998821289999999865443221100000     0112233332335668999999999


Q ss_pred             Ccccc----------------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPVQF----------------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++...                +.++.+.+.++ .++.+++..+|-+
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv  126 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPV  126 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcH
Confidence            87532                45666677776 4677777777643

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.37  E-value=1.2e-06  Score=82.99  Aligned_cols=82  Identities=21%  Similarity=0.280  Sum_probs=63.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil  205 (458)
                      |||+|||+|.||..++..|.+.|  ++| .+||+++. .+.                     .++|+++++ .++|+|++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g--~~lv~v~d~~~~-~~~---------------------~~~~~~~l~~~~~DvVv~   56 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNG--FEIAAILDVRGE-HEK---------------------MVRGIDEFLQREMDVAVE   56 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEEECSSCC-CTT---------------------EESSHHHHTTSCCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCC--CEEEEEEecCcc-hhh---------------------hcCCHHHHhcCCCCEEEE
Confidence            68999999999999999999877  887 68998741 100                     345888887 68999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |+|.....+++...   ++.|..+++.+.+.
T Consensus        57 ~~~~~~~~~~~~~~---l~~G~~vv~~~~~~   84 (236)
T 2dc1_A           57 AASQQAVKDYAEKI---LKAGIDLIVLSTGA   84 (236)
T ss_dssp             CSCHHHHHHHHHHH---HHTTCEEEESCGGG
T ss_pred             CCCHHHHHHHHHHH---HHCCCcEEEECccc
Confidence            99988776666543   34688888776543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.37  E-value=2.1e-06  Score=86.13  Aligned_cols=95  Identities=15%  Similarity=0.224  Sum_probs=70.4

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      +++||+|||+|.||..++..|.+...+.+|. ++|+++++++.+.+..             ++..++|.++++.  ++|+
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~~~D~   78 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT-------------GARGHASLTDMLAQTDADI   78 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH-------------CCEEESCHHHHHHHCCCSE
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc-------------CCceeCCHHHHhcCCCCCE
Confidence            3579999999999999999999871127765 8899999888776642             2456779998876  8999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        79 V~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~a  109 (354)
T 3q2i_A           79 VILTTPSGLHPTQSIECSE---AGFHVM-TEKPMA  109 (354)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSC
T ss_pred             EEECCCcHHHHHHHHHHHH---CCCCEE-EeCCCc
Confidence            9999999877776655443   355544 444443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.35  E-value=1.9e-06  Score=85.01  Aligned_cols=95  Identities=17%  Similarity=0.284  Sum_probs=68.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCHHH---HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDPAV---CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~~~~---~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      ++||+|||+|.||..+|..|+..|  +  +|.++|++++.   +..+...          . ...+..+.|. +++++||
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g--~~~ev~L~Di~~~~~g~a~dl~~~----------~-~~~i~~t~d~-~~l~~aD   79 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKG--IADRLVLLDLSEGTKGATMDLEIF----------N-LPNVEISKDL-SASAHSK   79 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHT--CCSEEEEECCC-----CHHHHHHH----------T-CTTEEEESCG-GGGTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEcCCcchHHHHHHHhhh----------c-CCCeEEeCCH-HHHCCCC
Confidence            479999999999999999999998  6  99999998752   1122210          0 1256777888 5689999


Q ss_pred             EEEEcC-------------cc--ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          202 YCLHAM-------------PV--QFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       202 iVilaV-------------p~--~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +||++.             ..  .-+.++++++.++. ++.+++..+|.+
T Consensus        80 ~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~  128 (303)
T 2i6t_A           80 VVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPV  128 (303)
T ss_dssp             EEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSH
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChH
Confidence            999997             21  22666777777776 677887888844

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.33  E-value=3.2e-06  Score=83.90  Aligned_cols=91  Identities=16%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiV  203 (458)
                      ++||+|||+|.||..++..|.+.. +++|. ++++++++++.+.+..             ++. .+|.++++.  ++|+|
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~-------------~~~-~~~~~~~l~~~~~D~V   67 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNA-DARLVAVADAFPAAAEAIAGAY-------------GCE-VRTIDAIEAAADIDAV   67 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHT-------------TCE-ECCHHHHHHCTTCCEE
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCC-CcEEEEEECCCHHHHHHHHHHh-------------CCC-cCCHHHHhcCCCCCEE
Confidence            579999999999999999998863 27776 7899999888877642             133 568888876  79999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++|+|.....+++.....   .|..|+ +.|-+
T Consensus        68 ~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~   96 (331)
T 4hkt_A           68 VICTPTDTHADLIERFAR---AGKAIF-CEKPI   96 (331)
T ss_dssp             EECSCGGGHHHHHHHHHH---TTCEEE-ECSCS
T ss_pred             EEeCCchhHHHHHHHHHH---cCCcEE-EecCC
Confidence            999999887777665543   354443 44433

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.33  E-value=1.8e-06  Score=85.87  Aligned_cols=105  Identities=19%  Similarity=0.213  Sum_probs=70.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      ++|||+|||+|.||.++|..|+..|  + +|.++|+++++++.....-.+....  ...+..+..+++. +++++||+||
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~--~~~v~l~Di~~~~~~g~a~dL~~~~~~--~~~~~~v~~t~d~-~a~~~aDvVI   78 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQ--LGDVVLFDIAQGMPNGKALDLLQTCPI--EGVDFKVRGTNDY-KDLENSDVVI   78 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSHHHHHHHHHHTTHHH--HTCCCCEEEESCG-GGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCChHHHHHHHHHHHhhhhh--cCCCcEEEEcCCH-HHHCCCCEEE
Confidence            4589999999999999999999988  5 9999999987665332211010000  0012345656675 5789999999


Q ss_pred             EcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          205 HAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       205 laVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++....                .++++.+.+.++. ++.+++..+|-+
T Consensus        79 i~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv  125 (321)
T 3p7m_A           79 VTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPL  125 (321)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             EcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCch
Confidence            996421                1344555666665 677777777744

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.30  E-value=8.3e-07  Score=78.08  Aligned_cols=85  Identities=6%  Similarity=-0.013  Sum_probs=63.6

Q ss_pred             CCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ..+|+|||+    |.||..++.+|.+.|  ++|+.+++... .+.+                .++.+..+++|+...+|+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G--~~v~~vnp~~~-g~~i----------------~G~~~~~sl~el~~~~Dl   73 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQG--YHVIPVSPKVA-GKTL----------------LGQQGYATLADVPEKVDM   73 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHT--CCEEEECSSST-TSEE----------------TTEECCSSTTTCSSCCSE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCC--CEEEEeCCccc-cccc----------------CCeeccCCHHHcCCCCCE
Confidence            578999999    899999999999999  88777776541 0001                134555677787778999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEE
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFIS  231 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~  231 (458)
                      +++|+|+..+.++++++.+ ...+.+++.
T Consensus        74 vii~vp~~~v~~v~~~~~~-~g~~~i~i~  101 (145)
T 2duw_A           74 VDVFRNSEAAWGVAQEAIA-IGAKTLWLQ  101 (145)
T ss_dssp             EECCSCSTHHHHHHHHHHH-HTCCEEECC
T ss_pred             EEEEeCHHHHHHHHHHHHH-cCCCEEEEc
Confidence            9999999999999988766 334455554

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.29  E-value=3.1e-06  Score=84.00  Aligned_cols=105  Identities=13%  Similarity=0.073  Sum_probs=68.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ++||+|||+|.||..+|..|+..|...+|.++|+++++++.....-.+ . .+  .+...+++..+..+++++||+||++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~-~-~~--~~~~~~~i~~~~~~al~~aDvViia   81 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH-G-KV--FAPKPVDIWHGDYDDCRDADLVVIC   81 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH-H-TT--SSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHH-H-hh--hcCCCeEEEcCcHHHhCCCCEEEEc
Confidence            579999999999999999999887334899999998755533211000 0 00  0111233333445678999999999


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .+..                -..++++.+.++. ++.+++..+|-+
T Consensus        82 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tNPv  126 (316)
T 1ldn_A           82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPV  126 (316)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred             CCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCCch
Confidence            7642                1344555666665 566676677743

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.29  E-value=3.8e-06  Score=83.88  Aligned_cols=107  Identities=17%  Similarity=0.139  Sum_probs=74.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiV  203 (458)
                      ++||+|||+|.||..++..|.+.. +.+|+ ++|+++++++.+.+....            ...++|.++++.  ++|+|
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~~~------------~~~~~~~~~ll~~~~~D~V   68 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMID-DAILYAISDVREDRLREMKEKLGV------------EKAYKDPHELIEDPNVDAV   68 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGST-TEEEEEEECSCHHHHHHHHHHHTC------------SEEESSHHHHHHCTTCCEE
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCC-CcEEEEEECCCHHHHHHHHHHhCC------------CceeCCHHHHhcCCCCCEE
Confidence            579999999999999999998753 26766 789999988877654210            135678888876  79999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC--cchhhhHHHHHHH
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE--LNTLRMMSQIIPQ  250 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~--~~t~~~l~e~l~~  250 (458)
                      ++|+|.....+++.....   .|..|+ +-|-+.  .+..+.+.+..++
T Consensus        69 ~i~tp~~~h~~~~~~al~---~gk~v~-~EKP~~~~~~e~~~l~~~a~~  113 (344)
T 3ezy_A           69 LVCSSTNTHSELVIACAK---AKKHVF-CEKPLSLNLADVDRMIEETKK  113 (344)
T ss_dssp             EECSCGGGHHHHHHHHHH---TTCEEE-EESCSCSCHHHHHHHHHHHHH
T ss_pred             EEcCCCcchHHHHHHHHh---cCCeEE-EECCCCCCHHHHHHHHHHHHH
Confidence            999999877776655443   355444 444333  3333444444433

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.29  E-value=1.4e-06  Score=74.77  Aligned_cols=96  Identities=11%  Similarity=0.166  Sum_probs=62.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---Hhh-cCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---KTA-LLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~---~ea-~~~aDi  202 (458)
                      +++|.|+|+|.+|..++..|.+.|  ++|++++++++.++.+.+.+... +..+         ..+.   .++ +.++|+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~~~~~~-~~~d---------~~~~~~l~~~~~~~~d~   73 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYATHA-VIAN---------ATEENELLSLGIRNFEY   73 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHTTTTTCSEE-EECC---------TTCHHHHHTTTGGGCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhCCEE-EEeC---------CCCHHHHHhcCCCCCCE
Confidence            467999999999999999999999  99999999988776655433210 0000         0122   222 568999


Q ss_pred             EEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       203 VilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      ||++++.. .....+......+.+. .++..+++
T Consensus        74 vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           74 VIVAIGANIQASTLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCS-EEEEECCS
T ss_pred             EEECCCCchHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence            99999974 3332333333334555 45555543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.28  E-value=1.5e-06  Score=82.98  Aligned_cols=127  Identities=15%  Similarity=0.208  Sum_probs=81.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .||||+|+|+|.||..++..+.+.+  +++. +++++.+.     ..              ++.+++|+++++ ++|++|
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~--~eLva~~d~~~~~-----~~--------------gv~v~~dl~~l~-~~DVvI   59 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKG--HEIVGVIENTPKA-----TT--------------PYQQYQHIADVK-GADVAI   59 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEECSSCC-------C--------------CSCBCSCTTTCT-TCSEEE
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCC--CEEEEEEecCccc-----cC--------------CCceeCCHHHHh-CCCEEE
Confidence            4789999999999999999999987  5655 47877641     11              233556787777 999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASK  284 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~  284 (458)
                      -++....+.+.+.     ++.+..+|..+.|+..+..    +.+.+. ..   ...++..|++..-+..           
T Consensus        60 Dft~p~a~~~~~~-----l~~g~~vVigTTG~s~e~~----~~l~~a-a~---~~~v~~a~N~S~Gv~l-----------  115 (243)
T 3qy9_A           60 DFSNPNLLFPLLD-----EDFHLPLVVATTGEKEKLL----NKLDEL-SQ---NMPVFFSANMSYGVHA-----------  115 (243)
T ss_dssp             ECSCHHHHHHHHT-----SCCCCCEEECCCSSHHHHH----HHHHHH-TT---TSEEEECSSCCHHHHH-----------
T ss_pred             EeCChHHHHHHHH-----HhcCCceEeCCCCCCHHHH----HHHHHH-Hh---cCCEEEECCccHHHHH-----------
Confidence            6555444444433     5667777777778765432    333333 22   1456888887653210           


Q ss_pred             CHHHHHHHHHHHhc
Q 012720          285 DRKLANAVQQLLAS  298 (458)
Q Consensus       285 d~e~~e~l~~lL~~  298 (458)
                      -.+..+.+.+.|..
T Consensus       116 ~~~~~~~aa~~l~~  129 (243)
T 3qy9_A          116 LTKILAAAVPLLDD  129 (243)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCC
Confidence            02455667777764

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.28  E-value=1.2e-06  Score=91.65  Aligned_cols=92  Identities=14%  Similarity=0.020  Sum_probs=70.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..+|.+|..-|  .+|++|+|++.........|              +.. .+++++++++|+|+++
T Consensus       277 GktVgIIG~G~IG~~vA~~l~~~G--~~V~v~d~~~~~~~~a~~~G--------------~~~-~~l~ell~~aDiVi~~  339 (494)
T 3d64_A          277 GKIAVVAGYGDVGKGCAQSLRGLG--ATVWVTEIDPICALQAAMEG--------------YRV-VTMEYAADKADIFVTA  339 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSCHHHHHHHHTTT--------------CEE-CCHHHHTTTCSEEEEC
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCChHhHHHHHHcC--------------CEe-CCHHHHHhcCCEEEEC
Confidence            679999999999999999999777  99999999987542322222              222 3788999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +....+-  -.+....++++.+||++..|-.
T Consensus       340 ~~t~~lI--~~~~l~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          340 TGNYHVI--NHDHMKAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             SSSSCSB--CHHHHHHCCTTEEEEECSSSSC
T ss_pred             CCccccc--CHHHHhhCCCCcEEEEcCCCcc
Confidence            8543321  1345567889999999987743

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.28  E-value=2.1e-06  Score=85.22  Aligned_cols=104  Identities=21%  Similarity=0.269  Sum_probs=68.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC--HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD--PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~--~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .+||+|||+|.||..+|..|+.+|  + +|+++|++  +++++.....-.+..  +-...+..+..+++. +++++||+|
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g--~~~v~l~D~~~~~~~~~g~a~dl~~~~--~~~~~~~~i~~t~d~-~a~~~aDvV   82 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKE--LADVVLVDIPQLENPTKGKALDMLEAS--PVQGFDANIIGTSDY-ADTADSDVV   82 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCGGGHHHHHHHHHHHHHHH--HHHTCCCCEEEESCG-GGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeccchHHHHHHhhhhHHHhh--hhccCCCEEEEcCCH-HHhCCCCEE
Confidence            479999999999999999999998  7 99999999  544432221100000  000012346666675 458999999


Q ss_pred             EEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       204 ilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |++....                .++++.+.+.++ .++.+++..+|-+
T Consensus        83 Iiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNPv  130 (315)
T 3tl2_A           83 VITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNPV  130 (315)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSSH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCChH
Confidence            9997421                134445556665 3677888888743

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.26  E-value=3.2e-06  Score=84.25  Aligned_cols=106  Identities=13%  Similarity=0.013  Sum_probs=73.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..+||+|||+|.||..+|..|+..|.-.+|.++|+++++++.....-.+...   ......+..++|.++ +++||+||+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~---~~~~~~i~~t~d~~~-~~daDiVIi   95 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL---FLHTAKIVSGKDYSV-SAGSKLVVI   95 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG---GSCCSEEEEESSSCS-CSSCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh---cccCCeEEEcCCHHH-hCCCCEEEE
Confidence            3589999999999999999999998323899999998766543221000000   011234666778876 899999999


Q ss_pred             cCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +....                -++++.+.+.++ .++.+++..+|-+
T Consensus        96 taG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNPv  141 (330)
T 3ldh_A           96 TAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPELG  141 (330)
T ss_dssp             CCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred             eCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCcc
Confidence            86421                245566677776 5678888888744

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.26  E-value=2.9e-06  Score=84.31  Aligned_cols=106  Identities=13%  Similarity=0.094  Sum_probs=69.5

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCC-ccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNC-RYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~-~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |.+.|||+|||+|.+|.+++..|+..+.-.+|.++|+++++++.....-.+. .+.      ..+++..+..+++++||+
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~------~~~~v~~~~~~a~~~aDv   75 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFT------APKKIYSGEYSDCKDADL   75 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGS------CCCEEEECCGGGGTTCSE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhc------CCeEEEECCHHHhCCCCE
Confidence            4445899999999999999999998873238999999987766432211000 111      123333344567999999


Q ss_pred             EEEcCcccc----------------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          203 CLHAMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       203 VilaVp~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ||++.+...                +.++.+.+.++ .++.+++..+|-+
T Consensus        76 Vii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv  124 (318)
T 1ez4_A           76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV  124 (318)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCcH
Confidence            999986421                33444555555 4677777788754

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.25  E-value=2.5e-06  Score=84.82  Aligned_cols=95  Identities=14%  Similarity=0.038  Sum_probs=68.4

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      +++||+|||+|.||..++..|.+.. +.+|+ ++++++++++.+.+....            ..+++|.++++.  ++|+
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~~~~~~~~------------~~~~~~~~~ll~~~~~D~   70 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESA-QAEVRGIASRRLENAQKMAKELAI------------PVAYGSYEELCKDETIDI   70 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSS-SEEEEEEBCSSSHHHHHHHHHTTC------------CCCBSSHHHHHHCTTCSE
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHHHcCC------------CceeCCHHHHhcCCCCCE
Confidence            4579999999999999999998853 26766 789999888877664210            024568888776  7999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        71 V~i~tp~~~h~~~~~~al~---~gk~vl-~EKP~~  101 (330)
T 3e9m_A           71 IYIPTYNQGHYSAAKLALS---QGKPVL-LEKPFT  101 (330)
T ss_dssp             EEECCCGGGHHHHHHHHHH---TTCCEE-ECSSCC
T ss_pred             EEEcCCCHHHHHHHHHHHH---CCCeEE-EeCCCC
Confidence            9999999887776655443   344443 444433

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.25  E-value=5.2e-06  Score=82.70  Aligned_cols=101  Identities=14%  Similarity=0.158  Sum_probs=68.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~----l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .|||+|||+|.||.++|..|+..|.-.+|.++|+++++++.    +.. +. + ++     +.+++++++..+++++||+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~-~~-~-~~-----~~~v~i~~~~~~a~~~aDv   76 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNH-GK-A-FA-----PQPVKTSYGTYEDCKDADI   76 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHH-TG-G-GS-----SSCCEEEEECGGGGTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHh-cc-c-cc-----cCCeEEEeCcHHHhCCCCE
Confidence            58999999999999999999998822289999999887665    333 11 1 11     1123333333456899999


Q ss_pred             EEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          203 CLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       203 VilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ||++....                .+.++.+.+.++ .++.+++..+|-+
T Consensus        77 Vvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNPv  125 (326)
T 3pqe_A           77 VCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNPV  125 (326)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred             EEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCChH
Confidence            99998531                133444555554 4577888888744

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.25  E-value=6.5e-06  Score=82.59  Aligned_cols=97  Identities=12%  Similarity=0.117  Sum_probs=68.8

Q ss_pred             hhcCCCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--
Q 012720          123 ILERTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--  198 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~-~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--  198 (458)
                      ..|+++||+|||+|.||. .++..|.+.. +.+|+ ++++++++++.+.+..             ++...+|.++++.  
T Consensus        23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~~ll~~~   88 (350)
T 3rc1_A           23 ANANPIRVGVIGCADIAWRRALPALEAEP-LTEVTAIASRRWDRAKRFTERF-------------GGEPVEGYPALLERD   88 (350)
T ss_dssp             ---CCEEEEEESCCHHHHHTHHHHHHHCT-TEEEEEEEESSHHHHHHHHHHH-------------CSEEEESHHHHHTCT
T ss_pred             CCCCceEEEEEcCcHHHHHHHHHHHHhCC-CeEEEEEEcCCHHHHHHHHHHc-------------CCCCcCCHHHHhcCC
Confidence            334457999999999998 7899888773 27776 7899998888776542             1334468888875  


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +.|+|++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        89 ~~D~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a  123 (350)
T 3rc1_A           89 DVDAVYVPLPAVLHAEWIDRALR---AGKHVL-AEKPLT  123 (350)
T ss_dssp             TCSEEEECCCGGGHHHHHHHHHH---TTCEEE-EESSSC
T ss_pred             CCCEEEECCCcHHHHHHHHHHHH---CCCcEE-EeCCCC
Confidence            58999999999887777665443   355543 555444

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.24  E-value=2.2e-06  Score=89.43  Aligned_cols=92  Identities=12%  Similarity=0.026  Sum_probs=70.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..+|.+|...|  .+|++|++++.........|              +.. .+++++++.+|+|+++
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G--~~Viv~d~~~~~~~~a~~~g--------------~~~-~~l~ell~~aDiVi~~  319 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDPICAIQAVMEG--------------FNV-VTLDEIVDKGDFFITC  319 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHHHHHHHTTT--------------CEE-CCHHHHTTTCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCc--CEEEEEeCChhhHHHHHHcC--------------CEe-cCHHHHHhcCCEEEEC
Confidence            679999999999999999999888  99999999987643333333              222 3788999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +....+-  -.+....++++.+||+++.|-.
T Consensus       320 ~~t~~lI--~~~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          320 TGNVDVI--KLEHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             CSSSSSB--CHHHHTTCCTTCEEEECSSTTT
T ss_pred             CChhhhc--CHHHHhhcCCCcEEEEeCCCCc
Confidence            7543321  1244566899999999987643

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.23  E-value=7.7e-06  Score=81.65  Aligned_cols=95  Identities=14%  Similarity=0.086  Sum_probs=69.0

Q ss_pred             CCeEEEECcchHHHHHHHHHH-hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi  202 (458)
                      ++||+|||+|.||..++..|. +.. +.+|. ++++++++++.+.+...           ....+++|.++++++  +|+
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~-~~~l~av~d~~~~~~~~~~~~~g-----------~~~~~~~~~~~ll~~~~~D~   69 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLS-GAEIVAVTDVNQEAAQKVVEQYQ-----------LNATVYPNDDSLLADENVDA   69 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCS-SEEEEEEECSSHHHHHHHHHHTT-----------CCCEEESSHHHHHHCTTCCE
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhC-----------CCCeeeCCHHHHhcCCCCCE
Confidence            469999999999999999998 432 27766 78999998888766421           013567799988765  899


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        70 V~i~tp~~~h~~~~~~al~---~Gk~vl-~EKP~a  100 (344)
T 3mz0_A           70 VLVTSWGPAHESSVLKAIK---AQKYVF-CEKPLA  100 (344)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred             EEECCCchhHHHHHHHHHH---CCCcEE-EcCCCC
Confidence            9999999887776665443   455444 455444

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.23  E-value=2.3e-06  Score=87.88  Aligned_cols=92  Identities=11%  Similarity=-0.025  Sum_probs=71.7

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..++|+|||+|.+|..+|..|...|  .+|+++++++.........|.              .. .+++++++++|+|++
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~G--a~Viv~D~~p~~a~~A~~~G~--------------~~-~sL~eal~~ADVVil  272 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFG--ARVVVTEVDPINALQAAMEGY--------------QV-LLVEDVVEEAHIFVT  272 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCHHHHTTTCSEEEE
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCChhhhHHHHHhCC--------------ee-cCHHHHHhhCCEEEE
Confidence            3579999999999999999999988  899999999876554444431              22 378999999999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +.....+-.  .+....++++.+||++++|-
T Consensus       273 t~gt~~iI~--~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          273 TTGNDDIIT--SEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             CSSCSCSBC--TTTGGGCCTTEEEEECSSSG
T ss_pred             CCCCcCccC--HHHHhhcCCCcEEEEeCCCC
Confidence            776543211  24567789999999998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.21  E-value=6e-06  Score=81.95  Aligned_cols=104  Identities=17%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .+|||+|||+|.+|.+++..|+..|.-.+|.++|+++++++.....  +. ..++     ...+++..+..+++++||+|
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~-~~~~-----~~~~~v~~~~~~a~~~aDvV   78 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHA-TPYS-----PTTVRVKAGEYSDCHDADLV   78 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHH-GGGS-----SSCCEEEECCGGGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhh-hhhc-----CCCeEEEeCCHHHhCCCCEE
Confidence            3579999999999999999999887334899999998765532111  11 1111     11223332446679999999


Q ss_pred             EEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       204 ilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |++.+..                .+.++.+.+.++ .++.+++..+|-+
T Consensus        79 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv  126 (317)
T 3d0o_A           79 VICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPV  126 (317)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred             EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCcH
Confidence            9998642                134444556666 5677777777643

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.21  E-value=2.9e-06  Score=83.89  Aligned_cols=103  Identities=15%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp  208 (458)
                      ||+|||+|.||.++|..|+..+. .+|.++|+++++++.....-......  ...+..+..++|. +++++||+||++..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~--~~~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAE--LGVDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHH--HTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhh--cCCCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            79999999999999999998883 27999999987665422110000000  0012246666777 56899999999965


Q ss_pred             ccc----------------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          209 VQF----------------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       209 ~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ...                +.++++++.++. ++..++..+|-+
T Consensus        77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv  119 (308)
T 2d4a_B           77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTNPV  119 (308)
T ss_dssp             CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCch
Confidence            432                566667777765 677777788743

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.19  E-value=1.8e-06  Score=87.50  Aligned_cols=105  Identities=14%  Similarity=0.121  Sum_probs=70.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC--CCCCCCceE---------EeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP--EQKLPENVI---------ATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~--~~~l~~~i~---------a~~~~~e  195 (458)
                      ..||+|||+|.||..+|+.+...|  .+|+++||++++.+.+.+.|.....+.  ........+         ...++++
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            369999999999999999999999  899999999988888877553211110  000000000         0124667


Q ss_pred             hcCCCCEEEEcC--ccccHHHH-HHhhhhcCCCCCeEEEec
Q 012720          196 ALLGADYCLHAM--PVQFSSSF-LEGISDYVDPGLPFISLS  233 (458)
Q Consensus       196 a~~~aDiVilaV--p~~~v~~v-l~~i~~~l~~~~ivV~~s  233 (458)
                      +++++|+||.++  |......+ -++..+.++++.+||+++
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence            889999999986  42111111 245566678899999986

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.18  E-value=3.7e-06  Score=84.90  Aligned_cols=94  Identities=17%  Similarity=0.262  Sum_probs=64.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +.|||+|||+|.+|..++..|++.   ++|++++++.+.++.+++....      ..+  .+.-.+++.++++++|+||.
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~---~~v~~~~~~~~~~~~~~~~~~~------~~~--d~~d~~~l~~~~~~~DvVi~   83 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE---FDVYIGDVNNENLEKVKEFATP------LKV--DASNFDKLVEVMKEFELVIG   83 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT---SEEEEEESCHHHHHHHTTTSEE------EEC--CTTCHHHHHHHHTTCSEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC---CCeEEEEcCHHHHHHHhccCCc------EEE--ecCCHHHHHHHHhCCCEEEE
Confidence            368999999999999999999764   7999999999888877653210      000  00001134556789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+|......+++....   .++.+++++
T Consensus        84 ~~p~~~~~~v~~~~~~---~g~~yvD~s  108 (365)
T 3abi_A           84 ALPGFLGFKSIKAAIK---SKVDMVDVS  108 (365)
T ss_dssp             CCCGGGHHHHHHHHHH---HTCEEEECC
T ss_pred             ecCCcccchHHHHHHh---cCcceEeee
Confidence            9998766666654433   244555554

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.17  E-value=6.3e-06  Score=84.11  Aligned_cols=99  Identities=18%  Similarity=0.271  Sum_probs=78.0

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH------HHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA------VCQSINEKHCNCRYFPEQKLPENVIATTDA  193 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~------~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~  193 (458)
                      +.++.. .+||+|||.|+-|.+-|.+|.+.|  .+|++--|...      ..+...+.|.              .+. +.
T Consensus        31 ~~~~lk-gK~IaVIGyGsQG~AqAlNLRDSG--v~V~Vglr~~s~~e~~~S~~~A~~~Gf--------------~v~-~~   92 (491)
T 3ulk_A           31 GASYLQ-GKKVVIVGCGAQGLNQGLNMRDSG--LDISYALRKEAIAEKRASWRKATENGF--------------KVG-TY   92 (491)
T ss_dssp             TTGGGT-TSEEEEESCSHHHHHHHHHHHHTT--CEEEEEECHHHHHTTCHHHHHHHHTTC--------------EEE-EH
T ss_pred             hhHHHc-CCEEEEeCCChHhHHHHhHHHhcC--CcEEEEeCCCCcccccchHHHHHHCCC--------------Eec-CH
Confidence            344443 479999999999999999999999  89998877432      2334445453              232 67


Q ss_pred             HhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          194 KTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       194 ~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|+++.+|+|++-+|+....+++++|.+++++|..+.. +-|+.
T Consensus        93 ~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~f-aHGFn  135 (491)
T 3ulk_A           93 EELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGY-SHGFN  135 (491)
T ss_dssp             HHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEE-SSCHH
T ss_pred             HHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEe-cCccc
Confidence            88999999999999999999999999999999998864 44654

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.15  E-value=1.4e-05  Score=80.47  Aligned_cols=95  Identities=13%  Similarity=0.058  Sum_probs=68.7

Q ss_pred             CCeEEEECcchHHHHHHHHHH-hcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVA-NKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La-~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      ++||+|||+|.||..++..|. +.. +.+|. ++|+++++++.+.+...           ..+...+|.++++.  +.|+
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~-~~~lvav~d~~~~~~~~~a~~~g-----------~~~~~~~~~~~ll~~~~~D~   90 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVS-GVEVVAVCDIVAGRAQAALDKYA-----------IEAKDYNDYHDLINDKDVEV   90 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCT-TEEEEEEECSSTTHHHHHHHHHT-----------CCCEEESSHHHHHHCTTCCE
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCC-CcEEEEEEeCCHHHHHHHHHHhC-----------CCCeeeCCHHHHhcCCCCCE
Confidence            469999999999999999998 432 27766 78999988887765421           01356678988876  5899


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        91 V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKPla  121 (357)
T 3ec7_A           91 VIITASNEAHADVAVAALN---ANKYVF-CEKPLA  121 (357)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-EESSSC
T ss_pred             EEEcCCcHHHHHHHHHHHH---CCCCEE-eecCcc
Confidence            9999999887776655443   355444 555443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.15  E-value=1.4e-05  Score=80.16  Aligned_cols=102  Identities=20%  Similarity=0.241  Sum_probs=71.1

Q ss_pred             cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH----HHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS----INEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~----l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      +.++||+|||+ |.+|+.+|..++..|...+|.++|+++++++.    +... .   + +    ...+..+++..+++++
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~-~---~-~----~~~i~~t~d~~~al~d   76 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-G---F-E----GLNLTFTSDIKEALTD   76 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH-C---C-T----TCCCEEESCHHHHHTT
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC-c---C-C----CCceEEcCCHHHHhCC
Confidence            44689999998 99999999999988844589999999876654    3321 1   1 1    1246677888888999


Q ss_pred             CCEEEEcCccc----------------cHHHHHHhhhhcCCCCCe-EEEeccCC
Q 012720          200 ADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLP-FISLSKGL  236 (458)
Q Consensus       200 aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~i-vV~~snGi  236 (458)
                      ||+||++....                .+.++.+.+.++. ++.+ ++..+|-+
T Consensus        77 ADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~-p~a~~vlvvsNPv  129 (343)
T 3fi9_A           77 AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC-PDCKHVIIIFNPA  129 (343)
T ss_dssp             EEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC-TTCCEEEECSSSH
T ss_pred             CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-cCcEEEEEecCch
Confidence            99999986321                1334445566665 4554 67777744

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.14  E-value=8.3e-06  Score=71.62  Aligned_cols=102  Identities=8%  Similarity=0.059  Sum_probs=64.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhh---cCCCccCCCCCCCCceEEeCCHHhh-cCCC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEK---HCNCRYFPEQKLPENVIATTDAKTA-LLGA  200 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~-~~~~e~l~~~---g~~~~~~~~~~l~~~i~a~~~~~ea-~~~a  200 (458)
                      ..++|.|+|+|.+|..++..|.+.|  ++|++++++ +++++.+.+.   +.... .++..-      ...+.++ ++++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~~~~~~~~~~~~~~~~~~i-~gd~~~------~~~l~~a~i~~a   72 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDDIKQLEQRLGDNADVI-PGDSND------SSVLKKAGIDRC   72 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHCTTCEEE-ESCTTS------HHHHHHHTTTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCChHHHHHHHHhhcCCCeEE-EcCCCC------HHHHHHcChhhC
Confidence            3468999999999999999999999  999999997 5666555432   21100 000000      0112333 7899


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |+||++++.+.....+......+.+...++...++.
T Consensus        73 d~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~  108 (153)
T 1id1_A           73 RAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDS  108 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred             CEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            999999998765544444444443344455444433

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.13  E-value=1.4e-05  Score=80.32  Aligned_cols=101  Identities=12%  Similarity=0.163  Sum_probs=69.7

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G  199 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~  199 (458)
                      +|++++||+|||+|.||..++..|.+.. +.++ .++++++++++.+.+...         ++......+|.++++.  +
T Consensus         2 ~~~~~~~vgiiG~G~ig~~~~~~l~~~~-~~~lv~v~d~~~~~~~~~a~~~~---------~~~~~~~~~~~~~ll~~~~   71 (362)
T 1ydw_A            2 ATETQIRIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAFATANN---------YPESTKIHGSYESLLEDPE   71 (362)
T ss_dssp             ----CEEEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHTT---------CCTTCEEESSHHHHHHCTT
T ss_pred             CCCCceEEEEECchHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhC---------CCCCCeeeCCHHHHhcCCC
Confidence            4667789999999999999999998753 2665 478999988877765421         0112456678888775  5


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|+|++|+|.....+++....   +.|..|+ +-|-+.
T Consensus        72 ~D~V~i~tp~~~h~~~~~~al---~aGk~V~-~EKP~a  105 (362)
T 1ydw_A           72 IDALYVPLPTSLHVEWAIKAA---EKGKHIL-LEKPVA  105 (362)
T ss_dssp             CCEEEECCCGGGHHHHHHHHH---TTTCEEE-ECSSCS
T ss_pred             CCEEEEcCChHHHHHHHHHHH---HCCCeEE-EecCCc
Confidence            899999999988777665543   3566555 455443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.13  E-value=1e-05  Score=80.59  Aligned_cols=94  Identities=18%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             cCCCeEEEECcchHHHHHHHHHH-hcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCce-EEeCCHHhhcC--C
Q 012720          125 ERTNKVVVLGGGSFGTAMAAHVA-NKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENV-IATTDAKTALL--G  199 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~iA~~La-~aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i-~a~~~~~ea~~--~  199 (458)
                      ++++||+|||+|.||..++..|. +.. +++| .++++++++++.+.+..             ++ .+.+|.++++.  +
T Consensus         6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~-~~~~vav~d~~~~~~~~~a~~~-------------g~~~~~~~~~~~l~~~~   71 (346)
T 3cea_A            6 RKPLRAAIIGLGRLGERHARHLVNKIQ-GVKLVAACALDSNQLEWAKNEL-------------GVETTYTNYKDMIDTEN   71 (346)
T ss_dssp             CCCEEEEEECCSTTHHHHHHHHHHTCS-SEEEEEEECSCHHHHHHHHHTT-------------CCSEEESCHHHHHTTSC
T ss_pred             CCcceEEEEcCCHHHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHh-------------CCCcccCCHHHHhcCCC
Confidence            34679999999999999999998 532 2675 57899998887776531             11 45678888775  6


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|+|++|+|.....+++.....   .|..|+ +.|.+
T Consensus        72 ~D~V~i~tp~~~h~~~~~~al~---~G~~v~-~eKp~  104 (346)
T 3cea_A           72 IDAIFIVAPTPFHPEMTIYAMN---AGLNVF-CEKPL  104 (346)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCC
T ss_pred             CCEEEEeCChHhHHHHHHHHHH---CCCEEE-EcCCC
Confidence            9999999998877666655433   465554 34433

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.13  E-value=1.3e-05  Score=80.64  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      +++||+|||+|.||...+..|.+.. +.+|. ++++++++++...+.+              +..++|.++++.  +.|+
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~-~~~l~av~d~~~~~~~~a~~~g--------------~~~~~~~~~ll~~~~~D~   68 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAAD-NLEVHGVFDILAEKREAAAQKG--------------LKIYESYEAVLADEKVDA   68 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTST-TEEEEEEECSSHHHHHHHHTTT--------------CCBCSCHHHHHHCTTCCE
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHhcC--------------CceeCCHHHHhcCCCCCE
Confidence            4578999999999999999998763 26775 6799998776443322              234568888776  7899


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        69 V~i~tp~~~h~~~~~~al~---aGkhVl-~EKP~a   99 (359)
T 3e18_A           69 VLIATPNDSHKELAISALE---AGKHVV-CEKPVT   99 (359)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred             EEEcCCcHHHHHHHHHHHH---CCCCEE-eeCCCc
Confidence            9999999877776655443   455554 555444

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.12  E-value=5e-06  Score=81.99  Aligned_cols=92  Identities=12%  Similarity=0.218  Sum_probs=65.5

Q ss_pred             cCCCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      ++++||+|||+|.||..++..|.+.+ ++++ .++++++++++.+.+.               +...++.+++++  ++|
T Consensus         8 ~~~~~igiIG~G~~g~~~~~~l~~~~-~~~~v~v~d~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~D   71 (315)
T 3c1a_A            8 NSPVRLALIGAGRWGKNYIRTIAGLP-GAALVRLASSNPDNLALVPPG---------------CVIESDWRSVVSAPEVE   71 (315)
T ss_dssp             -CCEEEEEEECTTTTTTHHHHHHHCT-TEEEEEEEESCHHHHTTCCTT---------------CEEESSTHHHHTCTTCC
T ss_pred             CCcceEEEECCcHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHhh---------------CcccCCHHHHhhCCCCC
Confidence            34679999999999999999998863 2665 4899998765433221               235668888775  799


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|++|+|.....+++....+   .|..|+ +-|.+
T Consensus        72 ~V~i~tp~~~h~~~~~~al~---~Gk~v~-~eKP~  102 (315)
T 3c1a_A           72 AVIIATPPATHAEITLAAIA---SGKAVL-VEKPL  102 (315)
T ss_dssp             EEEEESCGGGHHHHHHHHHH---TTCEEE-EESSS
T ss_pred             EEEEeCChHHHHHHHHHHHH---CCCcEE-EcCCC
Confidence            99999999887777665433   455554 44433

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.12  E-value=9e-06  Score=80.98  Aligned_cols=103  Identities=13%  Similarity=0.073  Sum_probs=68.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCC-ccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNC-RYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~-~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .|||+|||+|.+|.+++..|+..+.-.+|.++|+++++++.....-.+. .+.      ..+++..+..+++++||+||+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~------~~~~i~~~~~~a~~~aDvVii   82 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFT------SPKKIYSAEYSDAKDADLVVI   82 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGS------CCCEEEECCGGGGGGCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhc------CCeEEEECCHHHhCCCCEEEE
Confidence            5799999999999999999998873238999999987765432211010 111      123333345667899999999


Q ss_pred             cCcccc----------------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQF----------------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +.+...                +.++.+.+.++- ++.+++..+|-+
T Consensus        83 ~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNPv  128 (326)
T 2zqz_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPV  128 (326)
T ss_dssp             CCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCcH
Confidence            986421                333444555553 677777788754

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.12  E-value=3e-06  Score=84.02  Aligned_cols=88  Identities=13%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----cCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-----g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      .++|+|||+|.||..++..|.+.....+|.+|+|+  +++++.+.     |.            .+... +++++++++|
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~------------~~~~~-~~~eav~~aD  185 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGV------------PARMA-APADIAAQAD  185 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTS------------CEEEC-CHHHHHHHCS
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCC------------eEEEe-CHHHHHhhCC
Confidence            57899999999999999999874212789999999  44444332     21            24555 8999999999


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +||+|+|+..  .++.  .+.+++|++|+++.
T Consensus       186 IVi~aT~s~~--pvl~--~~~l~~G~~V~~vG  213 (313)
T 3hdj_A          186 IVVTATRSTT--PLFA--GQALRAGAFVGAIG  213 (313)
T ss_dssp             EEEECCCCSS--CSSC--GGGCCTTCEEEECC
T ss_pred             EEEEccCCCC--cccC--HHHcCCCcEEEECC
Confidence            9999999742  1221  35688999998876

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.12  E-value=8e-06  Score=80.60  Aligned_cols=92  Identities=12%  Similarity=0.098  Sum_probs=63.8

Q ss_pred             CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      +++||+|||+|.||.. ++..|.+.. +.+|. ++++++++++.+.+. +.              ..+++.+++..++|+
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~-~~~lvav~d~~~~~~~~~~~~~g~--------------~~~~~~~~l~~~~D~   68 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAAS-DWTLQGAWSPTRAKALPICESWRI--------------PYADSLSSLAASCDA   68 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCS-SEEEEEEECSSCTTHHHHHHHHTC--------------CBCSSHHHHHTTCSE
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcCC--------------CccCcHHHhhcCCCE
Confidence            4579999999999996 888887642 26766 899998887776654 21              134566665468999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |++|+|.....+++.....   .|..|+ +-|.+
T Consensus        69 V~i~tp~~~h~~~~~~al~---~G~~v~-~eKP~   98 (319)
T 1tlt_A           69 VFVHSSTASHFDVVSTLLN---AGVHVC-VDKPL   98 (319)
T ss_dssp             EEECSCTTHHHHHHHHHHH---TTCEEE-EESSS
T ss_pred             EEEeCCchhHHHHHHHHHH---cCCeEE-EeCCC
Confidence            9999998776666655433   465544 34433

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.12  E-value=1.2e-05  Score=79.98  Aligned_cols=93  Identities=11%  Similarity=0.082  Sum_probs=68.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.||..++..|.+.....+|.+|+|++++++++.+.... .   +    ..+. .+++++++ ++|+|++|
T Consensus       125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-~---~----~~~~-~~~~~e~v-~aDvVi~a  194 (322)
T 1omo_A          125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-R---G----ISAS-VQPAEEAS-RCDVLVTT  194 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-T---T----CCEE-ECCHHHHT-SSSEEEEC
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-c---C----ceEE-ECCHHHHh-CCCEEEEe
Confidence            579999999999999999998732127899999999998888764210 0   0    1244 67888989 99999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|+..  .++.  ...+++|+.|+++.
T Consensus       195 Tp~~~--pv~~--~~~l~~G~~V~~ig  217 (322)
T 1omo_A          195 TPSRK--PVVK--AEWVEEGTHINAIG  217 (322)
T ss_dssp             CCCSS--CCBC--GGGCCTTCEEEECS
T ss_pred             eCCCC--ceec--HHHcCCCeEEEECC
Confidence            99743  1111  25678898888774

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.11  E-value=1.2e-05  Score=80.25  Aligned_cols=109  Identities=13%  Similarity=0.141  Sum_probs=72.3

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .....+||+|||+|.||..+|..|+..|...+|.++|+++++++.....-.+...+.   ....+..+.|.+ ++++||+
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~---~~~~i~~~~d~~-~~~~aDi   90 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFL---KTPKIVSSKDYS-VTANSKL   90 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC---SCCEEEECSSGG-GGTTEEE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhcc---CCCeEEEcCCHH-HhCCCCE
Confidence            344568999999999999999999998833389999999876654322110000011   122355567776 4899999


Q ss_pred             EEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          203 CLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       203 VilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ||++....                -+.++.+.+.++ .++.+++..+|-+
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNPv  139 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPV  139 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecChH
Confidence            99986421                134455666666 5678888888754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.11  E-value=3e-06  Score=86.54  Aligned_cols=105  Identities=14%  Similarity=0.169  Sum_probs=70.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCC-----C-C---CCCCceE------EeC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFP-----E-Q---KLPENVI------ATT  191 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~-----~-~---~l~~~i~------a~~  191 (458)
                      ..||+|||+|.+|..+|+.+...|  .+|++||+++++.+.+.+.|.......     + .   .+...+.      -..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            469999999999999999999988  899999999988888776553211100     0 0   0000000      012


Q ss_pred             CHHhhcCCCCEEEEcC--ccccHHH-HHHhhhhcCCCCCeEEEec
Q 012720          192 DAKTALLGADYCLHAM--PVQFSSS-FLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       192 ~~~ea~~~aDiVilaV--p~~~v~~-vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++++++++|+||.|+  |...... +-++....+++|.+||+++
T Consensus       268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence            4677889999999996  3211111 1245667788999999987

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.11  E-value=1.7e-05  Score=78.87  Aligned_cols=104  Identities=12%  Similarity=0.060  Sum_probs=69.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.||.++|..|+..|.-.+|.++|+++++++.....-.+..     .+..+++++++..+++++||+||++
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~-----~~~~~~~i~~~~~~a~~~aDiVvi~   83 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL-----PFTSPKKIYSAEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG-----GGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh-----hhcCCcEEEECcHHHhcCCCEEEEC
Confidence            57999999999999999999998832289999999887664332111100     0101344444445678999999998


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ....                -+.++.+.+.++- ++.+++..+|-+
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~ilvvtNPv  128 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAANPV  128 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTT-CCSEEEECSSSH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEccCch
Confidence            6531                1344555666654 577888888744

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.10  E-value=1.3e-05  Score=79.22  Aligned_cols=102  Identities=21%  Similarity=0.177  Sum_probs=67.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCC-ccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNC-RYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~-~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|||+|.+|.+++..|+..+.-.+|.++|+++++++.....-.+. .+.    .+..+.. ++ .+++++||+||++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~----~~~~v~~-~~-~~a~~~aD~Vii~   74 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFA----HPVWVWA-GS-YGDLEGARAVVLA   74 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGS----CCCEEEE-CC-GGGGTTEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhc----CCeEEEE-CC-HHHhCCCCEEEEC
Confidence            699999999999999999998764458999999987766432211110 111    1223443 34 5678999999998


Q ss_pred             Ccccc----------------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPVQF----------------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .+...                +.++.+.+.++ .++.+++..+|-+
T Consensus        75 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNPv  119 (310)
T 2xxj_A           75 AGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPV  119 (310)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCch
Confidence            86321                34444556565 4567777788754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.10  E-value=5.3e-06  Score=82.22  Aligned_cols=105  Identities=20%  Similarity=0.225  Sum_probs=66.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.||..+|..|+..|...+|.++|+++++++.....-.+..+..  ..+..+..+++ .+++++||+||++.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~--~~~~~v~~~~~-~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIH--GFDTRVTGTND-YGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHH--TCCCEEEEESS-SGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccccc--CCCcEEEECCC-HHHhCCCCEEEECC
Confidence            7999999999999999999998832389999999876552211100000000  00112443444 45689999999997


Q ss_pred             cccc----------------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          208 PVQF----------------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       208 p~~~----------------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ....                +.++.+.+.++ .|+.+++..+|-+
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv  121 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANPL  121 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSSH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCch
Confidence            5321                33344455555 4677888888744

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.08  E-value=2.3e-05  Score=77.52  Aligned_cols=91  Identities=10%  Similarity=0.053  Sum_probs=65.2

Q ss_pred             CeEEEECcchHHHHH-HHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCEE
Q 012720          128 NKVVVLGGGSFGTAM-AAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~mG~~i-A~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiV  203 (458)
                      +||+|||+|.||..+ +..|.+.+  ++|. ++++++++++.+.+....            ....+|.+++++  ++|+|
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~--~~~vav~d~~~~~~~~~~~~~g~------------~~~~~~~~~~l~~~~~D~V   66 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATG--GEVVSMMSTSAERGAAYATENGI------------GKSVTSVEELVGDPDVDAV   66 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTT--CEEEEEECSCHHHHHHHHHHTTC------------SCCBSCHHHHHTCTTCCEE
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCC--CeEEEEECCCHHHHHHHHHHcCC------------CcccCCHHHHhcCCCCCEE
Confidence            589999999999998 77887755  7765 789999888777654210            013457888775  59999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++|+|.....+++.....   .|..|+ +-|.+
T Consensus        67 ~i~tp~~~h~~~~~~al~---~Gk~v~-~ekP~   95 (332)
T 2glx_A           67 YVSTTNELHREQTLAAIR---AGKHVL-CEKPL   95 (332)
T ss_dssp             EECSCGGGHHHHHHHHHH---TTCEEE-ECSSS
T ss_pred             EEeCChhHhHHHHHHHHH---CCCeEE-EeCCC
Confidence            999998877776655433   466554 34433

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.07  E-value=1.5e-05  Score=78.84  Aligned_cols=87  Identities=18%  Similarity=0.316  Sum_probs=60.9

Q ss_pred             CCeEEEECcchHHH-HHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhc-CCCCEE
Q 012720          127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTAL-LGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~-~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiV  203 (458)
                      ++||+|||+|.||. .++..|.+.. +.+|+++++++++++.+.+. +..             ....+..+.+ .++|+|
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~-~~~l~v~d~~~~~~~~~a~~~g~~-------------~~~~~~~~~l~~~~D~V   67 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRYRVS-------------ATCTDYRDVLQYGVDAV   67 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHTTCC-------------CCCSSTTGGGGGCCSEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHcCCC-------------ccccCHHHHhhcCCCEE
Confidence            47999999999998 5888887652 27888999999988877654 211             0012333444 689999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEE
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFI  230 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV  230 (458)
                      ++|+|.....+++.....   .|..|+
T Consensus        68 ~i~tp~~~h~~~~~~al~---~Gk~V~   91 (323)
T 1xea_A           68 MIHAATDVHSTLAAFFLH---LGIPTF   91 (323)
T ss_dssp             EECSCGGGHHHHHHHHHH---TTCCEE
T ss_pred             EEECCchhHHHHHHHHHH---CCCeEE
Confidence            999998887777655433   355443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.06  E-value=7.1e-06  Score=81.46  Aligned_cols=94  Identities=14%  Similarity=0.032  Sum_probs=65.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCce-EEeCCHHhhcC--CCC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENV-IATTDAKTALL--GAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i-~a~~~~~ea~~--~aD  201 (458)
                      +++||+|||+|.||..++..|.+.+ +.+|+ +++|++++++.+.+..             ++ .+++|.++++.  ++|
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~-~~~~~av~d~~~~~~~~~a~~~-------------~~~~~~~~~~~ll~~~~~D   69 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAG-NGEVVAVSSRTLESAQAFANKY-------------HLPKAYDKLEDMLADESID   69 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHC-SEEEEEEECSCSSTTCC---CC-------------CCSCEESCHHHHHTCTTCC
T ss_pred             CceEEEEEechHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHHHc-------------CCCcccCCHHHHhcCCCCC
Confidence            4579999999999999999998765 25555 7899987665554421             12 35678998887  789


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        70 ~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a  101 (329)
T 3evn_A           70 VIYVATINQDHYKVAKAALL---AGKHVL-VEKPFT  101 (329)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred             EEEECCCcHHHHHHHHHHHH---CCCeEE-EccCCc
Confidence            99999999877776655443   355544 555444

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.05  E-value=2.2e-06  Score=82.45  Aligned_cols=91  Identities=11%  Similarity=0.110  Sum_probs=66.1

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      +|+|||+|.||.+++..|.+.|  . +|++++|+.++++++.+..             +....+++.++++++|+||.|+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G--~~~I~v~nR~~~ka~~la~~~-------------~~~~~~~~~~~~~~aDiVInat  174 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMG--VKDIWVVNRTIERAKALDFPV-------------KIFSLDQLDEVVKKAKSLFNTT  174 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCCEEEEESCHHHHHTCCSSC-------------EEEEGGGHHHHHHTCSEEEECS
T ss_pred             eEEEECcHHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHc-------------ccCCHHHHHhhhcCCCEEEECC
Confidence            8999999999999999999998  6 8999999998877665421             1123346667788999999999


Q ss_pred             ccccHHHHHHhh-hhcCCCCCeEEEeccC
Q 012720          208 PVQFSSSFLEGI-SDYVDPGLPFISLSKG  235 (458)
Q Consensus       208 p~~~v~~vl~~i-~~~l~~~~ivV~~snG  235 (458)
                      |..-..+. ..+ ...++++++|+++.-+
T Consensus       175 p~gm~p~~-~~i~~~~l~~~~~V~Divy~  202 (253)
T 3u62_A          175 SVGMKGEE-LPVSDDSLKNLSLVYDVIYF  202 (253)
T ss_dssp             STTTTSCC-CSCCHHHHTTCSEEEECSSS
T ss_pred             CCCCCCCC-CCCCHHHhCcCCEEEEeeCC
Confidence            85211000 011 2235678899999866

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.04  E-value=2.1e-05  Score=77.84  Aligned_cols=99  Identities=15%  Similarity=0.197  Sum_probs=67.6

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEE---eCCHHhhcCCCC
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGAD  201 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--~l~~~g~~~~~~~~~~l~~~i~a---~~~~~ea~~~aD  201 (458)
                      |||+|||+ |.+|..++..|+..|..++|.++|+++.+..  .+.. .         ..+..+..   ++|.+++++++|
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~-~---------~~~~~l~~~~~t~d~~~a~~~aD   70 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSH-I---------ETRATVKGYLGPEQLPDCLKGCD   70 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTT-S---------SSSCEEEEEESGGGHHHHHTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhc-c---------CcCceEEEecCCCCHHHHhCCCC
Confidence            69999998 9999999999998764468999999872221  1211 1         11223555   257888899999


Q ss_pred             EEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +||++....                .+.++++.+.++. ++..+|..+|-++
T Consensus        71 vVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sNPv~  121 (314)
T 1mld_A           71 VVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVN  121 (314)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHH
T ss_pred             EEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCCcc
Confidence            999987421                2455556666665 5667777787443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.03  E-value=1e-05  Score=84.76  Aligned_cols=91  Identities=14%  Similarity=0.039  Sum_probs=70.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..++|+|||+|.||..+|..+...|  ++|+++++++++.+...+.|.              .. .+++++++++|+||.
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~~Ga--------------~~-~~l~e~l~~aDvVi~  335 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMMEGF--------------DV-VTVEEAIGDADIVVT  335 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCHHHHGGGCSEEEE
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCC--------------EE-ecHHHHHhCCCEEEE
Confidence            4689999999999999999999888  899999999987766665542              11 266778889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      |++...+-.  .+....++++.+|+++..+
T Consensus       336 atgt~~~i~--~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          336 ATGNKDIIM--LEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             CSSSSCSBC--HHHHHHSCTTCEEEECSSS
T ss_pred             CCCCHHHHH--HHHHHhcCCCcEEEEeCCC
Confidence            998654211  1344567889999988754

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.00  E-value=6.5e-06  Score=84.38  Aligned_cols=90  Identities=14%  Similarity=0.119  Sum_probs=68.2

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..++|+|+|+|.+|..+|..|...|  .+|+++++++.........|.              .. .+++++++.+|+|++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp~ra~~A~~~G~--------------~v-~~Leeal~~ADIVi~  281 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDPICALQACMDGF--------------RL-VKLNEVIRQVDIVIT  281 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCHHHHTTTCSEEEE
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCChhhhHHHHHcCC--------------Ee-ccHHHHHhcCCEEEE
Confidence            4679999999999999999999888  899999999865544433331              12 378899999999999


Q ss_pred             cCccccHHHHH-HhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFSSSFL-EGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v~~vl-~~i~~~l~~~~ivV~~snG  235 (458)
                      |.....   ++ .+....++++.+|+++..|
T Consensus       282 atgt~~---lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          282 CTGNKN---VVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             CSSCSC---SBCHHHHHHSCTTEEEEECSST
T ss_pred             CCCCcc---cCCHHHHHhcCCCcEEEEecCC
Confidence            843322   22 2345567889999999876

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.00  E-value=2e-05  Score=77.68  Aligned_cols=87  Identities=14%  Similarity=0.166  Sum_probs=57.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +++||+|||+|.||..++..|.+.. +.+|. +++++++.++.   .|..            ....+++.+. .++|+|+
T Consensus         8 ~~irv~IIG~G~iG~~~~~~l~~~~-~~elvav~d~~~~~~~~---~g~~------------~~~~~~l~~~-~~~DvVi   70 (304)
T 3bio_A            8 KKIRAAIVGYGNIGRYALQALREAP-DFEIAGIVRRNPAEVPF---ELQP------------FRVVSDIEQL-ESVDVAL   70 (304)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCT-TEEEEEEECC----------CCTT------------SCEESSGGGS-SSCCEEE
T ss_pred             CCCEEEEECChHHHHHHHHHHhcCC-CCEEEEEEcCCHHHHHH---cCCC------------cCCHHHHHhC-CCCCEEE
Confidence            3579999999999999999998753 27877 78998876543   2211            1223455554 7899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +|+|.....+.+..+.   +.|..|++.
T Consensus        71 iatp~~~h~~~~~~al---~aG~~Vi~e   95 (304)
T 3bio_A           71 VCSPSREVERTALEIL---KKGICTADS   95 (304)
T ss_dssp             ECSCHHHHHHHHHHHH---TTTCEEEEC
T ss_pred             ECCCchhhHHHHHHHH---HcCCeEEEC
Confidence            9999877766665443   347777754

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.99  E-value=1.9e-05  Score=78.40  Aligned_cols=95  Identities=11%  Similarity=0.032  Sum_probs=67.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-CCe-EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLK-VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~-V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      ++||+|||+|.||..++..|.+.+. +++ |.+++|++++++.+.+....            ..+++|.++++.  +.|+
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~------------~~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDI------------PKAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTC------------SCEESSHHHHHHCTTCCE
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCC------------CcccCCHHHHhcCCCCCE
Confidence            5799999999999999999976541 134 44789999988887664210            035678888876  6999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        70 V~i~tp~~~H~~~~~~al~---~GkhVl-~EKP~a  100 (334)
T 3ohs_X           70 AYVGTQHPQHKAAVMLCLA---AGKAVL-CEKPMG  100 (334)
T ss_dssp             EEECCCGGGHHHHHHHHHH---TTCEEE-EESSSS
T ss_pred             EEECCCcHHHHHHHHHHHh---cCCEEE-EECCCC
Confidence            9999998877776655443   355543 555444

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.98  E-value=1.3e-05  Score=77.87  Aligned_cols=149  Identities=14%  Similarity=0.119  Sum_probs=90.6

Q ss_pred             cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       125 ~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |+||||+|+| .|.||..++..+.+.. ++++.. ++|+....     .|.....+-+  +..++.+++|+++++.++|+
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~-~~eLv~~~d~~~~~~-----~G~d~gel~g--~~~gv~v~~dl~~ll~~~DV   76 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAP-DATLVGALDRTGSPQ-----LGQDAGAFLG--KQTGVALTDDIERVCAEADY   76 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCT-TEEEEEEBCCTTCTT-----TTSBTTTTTT--CCCSCBCBCCHHHHHHHCSE
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEEecCccc-----ccccHHHHhC--CCCCceecCCHHHHhcCCCE
Confidence            3568999999 8999999999998764 366664 67764311     1211111111  11256667899998889999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      ||-+++...+.+.+..+..   .|..+|..+.|+..+..    +.+.+. ..   ...++..|++...+..         
T Consensus        77 VIDfT~p~a~~~~~~~al~---~G~~vVigTTG~s~~~~----~~L~~a-a~---~~~vv~a~N~s~Gv~l---------  136 (272)
T 4f3y_A           77 LIDFTLPEGTLVHLDAALR---HDVKLVIGTTGFSEPQK----AQLRAA-GE---KIALVFSANMSVGVNV---------  136 (272)
T ss_dssp             EEECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHH----HHHHHH-TT---TSEEEECSCCCHHHHH---------
T ss_pred             EEEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHH----HHHHHH-hc---cCCEEEECCCCHHHHH---------
Confidence            9999987777666655544   46667777778765422    334343 21   1356888887642210         


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEE
Q 012720          283 SKDRKLANAVQQLLASKHLRIS  304 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~  304 (458)
                        -.+..+.+.+.|. .++.+.
T Consensus       137 --~~~~~~~aa~~l~-~~~die  155 (272)
T 4f3y_A          137 --TMKLLEFAAKQFA-QGYDIE  155 (272)
T ss_dssp             --HHHHHHHHHHHTS-SSCEEE
T ss_pred             --HHHHHHHHHHhcC-cCCCEE
Confidence              1244566677775 234443

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.96  E-value=7.3e-06  Score=80.57  Aligned_cols=96  Identities=14%  Similarity=0.200  Sum_probs=68.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||+|.||.+++..|++.|  . +|++|+|+.++++.+.+.... .      .. .+...+++.+.+.++|+||.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G--~~~V~v~nR~~~ka~~la~~~~~-~------~~-~~~~~~~~~~~~~~aDivIn  210 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTA--AERIDMANRTVEKAERLVREGDE-R------RS-AYFSLAEAETRLAEYDIIIN  210 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--CSEEEEECSSHHHHHHHHHHSCS-S------SC-CEECHHHHHHTGGGCSEEEE
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHhhh-c------cC-ceeeHHHHHhhhccCCEEEE
Confidence            579999999999999999999998  6 999999999988888764210 0      00 11111345566789999999


Q ss_pred             cCccccH---HHHHHhh-hhcCCCCCeEEEecc
Q 012720          206 AMPVQFS---SSFLEGI-SDYVDPGLPFISLSK  234 (458)
Q Consensus       206 aVp~~~v---~~vl~~i-~~~l~~~~ivV~~sn  234 (458)
                      |+|....   ..+.  + ...++++.+++++.-
T Consensus       211 ~t~~~~~~~~~~~~--i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          211 TTSVGMHPRVEVQP--LSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             CSCTTCSSCCSCCS--SCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCCCC--CCHHHcCCCCEEEEcCC
Confidence            9996432   1110  1 245678889999874

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.96  E-value=2.4e-05  Score=78.67  Aligned_cols=96  Identities=13%  Similarity=0.065  Sum_probs=68.3

Q ss_pred             CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      +++||+|||+|.||.. ++..|.+.. +.+|. ++|+++++++.+.+...            ...+++|.++++.  +.|
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~vD   70 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQ-DIRIVAACDSDLERARRVHRFIS------------DIPVLDNVPAMLNQVPLD   70 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCT-TEEEEEEECSSHHHHGGGGGTSC------------SCCEESSHHHHHHHSCCS
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCC-CcEEEEEEcCCHHHHHHHHHhcC------------CCcccCCHHHHhcCCCCC
Confidence            4579999999999985 888888753 26776 88999988777665310            2346678988876  569


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|++|+|.....+++.....   .|..|+ +-|-+..
T Consensus        71 ~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  103 (359)
T 3m2t_A           71 AVVMAGPPQLHFEMGLLAMS---KGVNVF-VEKPPCA  103 (359)
T ss_dssp             EEEECSCHHHHHHHHHHHHH---TTCEEE-ECSCSCS
T ss_pred             EEEEcCCcHHHHHHHHHHHH---CCCeEE-EECCCcC
Confidence            99999998777666655443   355543 5555443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.95  E-value=1.6e-05  Score=81.83  Aligned_cols=93  Identities=14%  Similarity=0.017  Sum_probs=70.2

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      +...++|+|||+|.+|..+|.+|...|  .+|+++++++.........|              +.+ .+++++++.+|+|
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafG--a~Viv~d~dp~~a~~A~~~G--------------~~v-v~LeElL~~ADIV  306 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAG--ARVKVTEVDPICALQAAMDG--------------FEV-VTLDDAASTADIV  306 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTT--------------CEE-CCHHHHGGGCSEE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCcchhhHHHhcC--------------cee-ccHHHHHhhCCEE
Confidence            334689999999999999999999888  89999999986544333333              222 3688999999999


Q ss_pred             EEcCccccHHHHH-HhhhhcCCCCCeEEEeccCC
Q 012720          204 LHAMPVQFSSSFL-EGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       204 ilaVp~~~v~~vl-~~i~~~l~~~~ivV~~snGi  236 (458)
                      +.++....+   + .+....++++.+||++..|-
T Consensus       307 v~atgt~~l---I~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          307 VTTTGNKDV---ITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             EECCSSSSS---BCHHHHHHSCTTEEEEECSSST
T ss_pred             EECCCCccc---cCHHHHhcCCCCeEEEEcCCCC
Confidence            998765432   2 23456688999999998764

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.93  E-value=4.5e-05  Score=76.32  Aligned_cols=96  Identities=14%  Similarity=0.161  Sum_probs=66.4

Q ss_pred             hhcCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC-
Q 012720          123 ILERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-  199 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~-  199 (458)
                      .|++++||+|||+|.||.. .+..|.+.. +.+|. ++++++++++   +..            .++.+++|.++++.+ 
T Consensus         3 ~M~~~~rvgiiG~G~~g~~~~~~~~~~~~-~~~l~av~d~~~~~~~---~~~------------~~~~~~~~~~~ll~~~   66 (352)
T 3kux_A            3 AMADKIKVGLLGYGYASKTFHAPLIMGTP-GLELAGVSSSDASKVH---ADW------------PAIPVVSDPQMLFNDP   66 (352)
T ss_dssp             TTTCCEEEEEECCSHHHHHTHHHHHHTST-TEEEEEEECSCHHHHH---TTC------------SSCCEESCHHHHHHCS
T ss_pred             cccCCceEEEECCCHHHHHHHHHHHhhCC-CcEEEEEECCCHHHHH---hhC------------CCCceECCHHHHhcCC
Confidence            4666789999999999996 677776653 26765 7899987654   111            124567799988764 


Q ss_pred             -CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          200 -ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       200 -aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                       .|+|++|+|.....+++.....   .|..|+ +-|-+..
T Consensus        67 ~vD~V~i~tp~~~H~~~~~~al~---aGkhV~-~EKPla~  102 (352)
T 3kux_A           67 SIDLIVIPTPNDTHFPLAQSALA---AGKHVV-VDKPFTV  102 (352)
T ss_dssp             SCCEEEECSCTTTHHHHHHHHHH---TTCEEE-ECSSCCS
T ss_pred             CCCEEEEeCChHHHHHHHHHHHH---CCCcEE-EECCCcC
Confidence             8999999998877666655433   455554 4555443

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.92  E-value=3.5e-05  Score=77.63  Aligned_cols=99  Identities=8%  Similarity=0.008  Sum_probs=67.8

Q ss_pred             hhhcCCCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          122 DILERTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       122 ~~~~~~~kI~IIGaG~mG~-~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      +.||+++||+|||+|.+|. .++..+...+  .+|. ++|+++++++.+.+...            ...+++|.++++.+
T Consensus        21 ~~Mm~~irvgiiG~G~~~~~~~~~~~~~~~--~~lvav~d~~~~~a~~~a~~~~------------~~~~~~~~~~ll~~   86 (361)
T 3u3x_A           21 QSMMDELRFAAVGLNHNHIYGQVNCLLRAG--ARLAGFHEKDDALAAEFSAVYA------------DARRIATAEEILED   86 (361)
T ss_dssp             -----CCEEEEECCCSTTHHHHHHHHHHTT--CEEEEEECSCHHHHHHHHHHSS------------SCCEESCHHHHHTC
T ss_pred             hhhccCcEEEEECcCHHHHHHHHHHhhcCC--cEEEEEEcCCHHHHHHHHHHcC------------CCcccCCHHHHhcC
Confidence            3466778999999999994 5677776666  7755 78999998888876421            13466799998764


Q ss_pred             --CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          200 --ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       200 --aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                        .|+|++|+|.....+++...+.   .|..|+ +-|-+..
T Consensus        87 ~~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  123 (361)
T 3u3x_A           87 ENIGLIVSAAVSSERAELAIRAMQ---HGKDVL-VDKPGMT  123 (361)
T ss_dssp             TTCCEEEECCCHHHHHHHHHHHHH---TTCEEE-EESCSCS
T ss_pred             CCCCEEEEeCChHHHHHHHHHHHH---CCCeEE-EeCCCCC
Confidence              8999999998777666655443   355543 5555543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.90  E-value=6.3e-05  Score=73.74  Aligned_cols=104  Identities=11%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|||+|.+|.++|..|+.++.-.++.++|.++++++-....  +... ++   .....+....|.+ +++++|+||+
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~-~~---~~~~~i~~~~d~~-~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GI---DKYPKIVGGADYS-LLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG-GG---TCCCEEEEESCGG-GGTTCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc-cC---CCCCeEecCCCHH-HhCCCCEEEE
Confidence            79999999999999999999887435899999998654322111  1000 00   1112345566765 4899999999


Q ss_pred             cCcc-----c-----------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~-----~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +--.     .           -++++.+.+.++- ++.+++.++|-++
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNPvd  122 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMD  122 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCcch
Confidence            7642     1           1344555566654 5678888888544

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.89  E-value=4e-05  Score=74.81  Aligned_cols=152  Identities=14%  Similarity=0.149  Sum_probs=88.9

Q ss_pred             hhcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          123 ILERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       123 ~~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      .|+.++||+|+| .|.||..++..+.+.. +.++. +++++....     .|.....+-+.. +.++.+++|+++++.++
T Consensus        17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~-~~eLvg~vd~~~~~~-----~G~d~gel~G~~-~~gv~v~~dl~~ll~~a   89 (288)
T 3ijp_A           17 QGPGSMRLTVVGANGRMGRELITAIQRRK-DVELCAVLVRKGSSF-----VDKDASILIGSD-FLGVRITDDPESAFSNT   89 (288)
T ss_dssp             ----CEEEEESSTTSHHHHHHHHHHHTCS-SEEEEEEBCCTTCTT-----TTSBGGGGTTCS-CCSCBCBSCHHHHTTSC
T ss_pred             hccCCeEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccc-----cccchHHhhccC-cCCceeeCCHHHHhcCC
Confidence            566678999999 8999999999988653 26655 457764210     111111111111 23466778999988999


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEE
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMV  280 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~  280 (458)
                      |+||-+++...+.+.+..+..   .|..+|..+.|+..+..    +.+.+.-.    ...++..|++...+..       
T Consensus        90 DVvIDFT~p~a~~~~~~~~l~---~Gv~vViGTTG~~~e~~----~~L~~aa~----~~~~~~a~N~SiGv~l-------  151 (288)
T 3ijp_A           90 EGILDFSQPQASVLYANYAAQ---KSLIHIIGTTGFSKTEE----AQIADFAK----YTTIVKSGNMSLGVNL-------  151 (288)
T ss_dssp             SEEEECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHH----HHHHHHHT----TSEEEECSCCCHHHHH-------
T ss_pred             CEEEEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHH----HHHHHHhC----cCCEEEECCCcHHHHH-------
Confidence            999988876666555554443   46777777778865432    23333322    1356888887653210       


Q ss_pred             EccCCHHHHHHHHHHHhcCCCeEE
Q 012720          281 VASKDRKLANAVQQLLASKHLRIS  304 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~v~  304 (458)
                          -....+.+.+.|. .++.+.
T Consensus       152 ----l~~l~~~aa~~l~-~~~die  170 (288)
T 3ijp_A          152 ----LANLVKRAAKALD-DDFDIE  170 (288)
T ss_dssp             ----HHHHHHHHHHHSC-TTSEEE
T ss_pred             ----HHHHHHHHHHhcC-CCCCEE
Confidence                0244566666675 244544

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.88  E-value=2.8e-05  Score=77.22  Aligned_cols=94  Identities=12%  Similarity=0.049  Sum_probs=66.2

Q ss_pred             CCCeEEEECcchHHH-HHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~-~iA~~La~aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      +++||+|||+|.+|. .++..|...+  .+| .++|+++++++.+.+...            .+.+++|.+++++  +.|
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~--~~lvav~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~~D   68 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAG--AELAGVFESDSDNRAKFTSLFP------------SVPFAASAEQLITDASID   68 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTT--CEEEEEECSCTTSCHHHHHHST------------TCCBCSCHHHHHTCTTCC
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCC--cEEEEEeCCCHHHHHHHHHhcC------------CCcccCCHHHHhhCCCCC
Confidence            468999999999996 6777776666  786 588999988777766421            1234568888776  689


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        69 ~V~i~tp~~~h~~~~~~al~---aGkhVl-~EKP~a  100 (336)
T 2p2s_A           69 LIACAVIPCDRAELALRTLD---AGKDFF-TAKPPL  100 (336)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSCC
T ss_pred             EEEEeCChhhHHHHHHHHHH---CCCcEE-EeCCCC
Confidence            99999998877666655433   455544 444443

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.88  E-value=5.5e-05  Score=75.40  Aligned_cols=109  Identities=12%  Similarity=0.131  Sum_probs=72.4

Q ss_pred             cCCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012720          125 ERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a  200 (458)
                      ++|+||||||+|.||.. ++..+.+.. +.+|. ++|+++++++++.++...            .++++|.++++.  +.
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~-~~~lvav~d~~~~~a~~~a~~~g~------------~~~y~d~~ell~~~~i   87 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAE-NCVVTAIASRDLTRAREMADRFSV------------PHAFGSYEEMLASDVI   87 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCS-SEEEEEEECSSHHHHHHHHHHHTC------------SEEESSHHHHHHCSSC
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCC-CeEEEEEECCCHHHHHHHHHHcCC------------CeeeCCHHHHhcCCCC
Confidence            34679999999999975 466666553 26766 789999998888764210            146679998774  58


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc--chhhhHHHHHHH
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL--NTLRMMSQIIPQ  250 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~--~t~~~l~e~l~~  250 (458)
                      |+|++|+|.....++....+.   .|..| .|-|-+..  ++.+.+.+..++
T Consensus        88 DaV~I~tP~~~H~~~~~~al~---aGkhV-l~EKPla~~~~ea~~l~~~a~~  135 (350)
T 4had_A           88 DAVYIPLPTSQHIEWSIKAAD---AGKHV-VCEKPLALKAGDIDAVIAARDR  135 (350)
T ss_dssp             SEEEECSCGGGHHHHHHHHHH---TTCEE-EECSCCCSSGGGGHHHHHHHHH
T ss_pred             CEEEEeCCCchhHHHHHHHHh---cCCEE-EEeCCcccchhhHHHHHHHHHH
Confidence            999999999877776655444   35544 35665543  333444444433

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.88  E-value=2.3e-05  Score=78.30  Aligned_cols=107  Identities=13%  Similarity=0.128  Sum_probs=66.8

Q ss_pred             CCeEEEECcchHHHHHHHH-HHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CCE
Q 012720          127 TNKVVVLGGGSFGTAMAAH-VANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--ADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~-La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aDi  202 (458)
                      ++||+|||+|.||..+... +.....+.+|. ++++++++.+...+.             .++.+++|.++++.+  .|+
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~-------------~~~~~~~~~~~ll~~~~~D~   68 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIY-------------SHIHFTSDLDEVLNDPDVKL   68 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGG-------------TTCEEESCTHHHHTCTTEEE
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhc-------------CCCceECCHHHHhcCCCCCE
Confidence            5799999999999865444 42321137776 789987654222211             135677899988765  899


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC--cchhhhHHHHHHH
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE--LNTLRMMSQIIPQ  250 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~--~~t~~~l~e~l~~  250 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+.  .+..+.+.+..++
T Consensus        69 V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a~~~~e~~~l~~~a~~  114 (345)
T 3f4l_A           69 VVVCTHADSHFEYAKRALE---AGKNVL-VEKPFTPTLAQAKELFALAKS  114 (345)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSCSSHHHHHHHHHHHHH
T ss_pred             EEEcCChHHHHHHHHHHHH---cCCcEE-EeCCCCCCHHHHHHHHHHHHH
Confidence            9999998877666655433   455554 556443  3333344444433

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.87  E-value=4.4e-06  Score=81.37  Aligned_cols=93  Identities=13%  Similarity=0.111  Sum_probs=64.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||+|.||.+++..|++.|  . +|++++|+.++++++.+..             .....+++.+++.++|+||.
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~~~~a~~la~~~-------------~~~~~~~~~~~~~~aDiVIn  181 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIV--RPTLTVANRTMSRFNNWSLNI-------------NKINLSHAESHLDEFDIIIN  181 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTC--CSCCEEECSCGGGGTTCCSCC-------------EEECHHHHHHTGGGCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHhc-------------ccccHhhHHHHhcCCCEEEE
Confidence            578999999999999999999999  7 8999999988765544311             11122355666789999999


Q ss_pred             cCccccHHHHHHhh-hhcCCCCCeEEEecc
Q 012720          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLSK  234 (458)
Q Consensus       206 aVp~~~v~~vl~~i-~~~l~~~~ivV~~sn  234 (458)
                      |+|..-....-..+ ...++++.+|+++.-
T Consensus       182 aTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY  211 (277)
T 3don_A          182 TTPAGMNGNTDSVISLNRLASHTLVSDIVY  211 (277)
T ss_dssp             CCC-------CCSSCCTTCCSSCEEEESCC
T ss_pred             CccCCCCCCCcCCCCHHHcCCCCEEEEecC
Confidence            99964221110001 345778899999873

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.87  E-value=4.6e-05  Score=78.29  Aligned_cols=98  Identities=17%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil  205 (458)
                      .++|.|||+|.+|..+|..|.+.|  ++|++++++++.++.+++.|....+ ++..-+      +.+.++ +.++|+||+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~~v~~~~~~g~~vi~-GDat~~------~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPDHIETLRKFGMKVFY-GDATRM------DLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHHHHHHHHHTTCCCEE-SCTTCH------HHHHHTTTTTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHhCCCeEEE-cCCCCH------HHHHhcCCCccCEEEE
Confidence            478999999999999999999999  9999999999999999877654221 111100      012233 578999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++.....-.+-.....+.++..||.-.
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            9997653333333333344454454444

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.86  E-value=6.9e-05  Score=74.59  Aligned_cols=102  Identities=18%  Similarity=0.161  Sum_probs=69.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCC-----CCeEEEEeCC----HHHHHH----HHhhcCCCccCCCCCCCCceEEeCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRD----PAVCQS----INEKHCNCRYFPEQKLPENVIATTD  192 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~-----~~~V~v~~r~----~~~~e~----l~~~g~~~~~~~~~~l~~~i~a~~~  192 (458)
                      .|||+|+|+ |.+|..++..|+..|.     ..+|.++|++    +++++.    +....        ..+...+..+++
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~--------~~~~~~i~~~~~   76 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA--------FPLLAGMTAHAD   76 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT--------CTTEEEEEEESS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc--------ccccCcEEEecC
Confidence            479999998 9999999999998772     0289999998    544432    22210        011235667788


Q ss_pred             HHhhcCCCCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          193 AKTALLGADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ..++++++|+||++....                .+.++++.+.++-.++..+|..+|-+
T Consensus        77 ~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv  136 (329)
T 1b8p_A           77 PMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA  136 (329)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             cHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch
Confidence            888999999999976421                13445556666543567888888743

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.85  E-value=5.9e-05  Score=76.57  Aligned_cols=93  Identities=17%  Similarity=0.186  Sum_probs=67.8

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      ++||+|||+| .||..++..|.+.. +.+|. ++++++++++++.+..             ++..++|.++++.  +.|+
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~-~~~l~av~d~~~~~~~~~a~~~-------------g~~~~~~~~ell~~~~vD~   67 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHP-DAQIVAACDPNEDVRERFGKEY-------------GIPVFATLAEMMQHVQMDA   67 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCT-TEEEEEEECSCHHHHHHHHHHH-------------TCCEESSHHHHHHHSCCSE
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCC-CeEEEEEEeCCHHHHHHHHHHc-------------CCCeECCHHHHHcCCCCCE
Confidence            5799999999 99999999998764 26665 7899998887776542             1345678888775  5999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        68 V~i~tp~~~H~~~~~~al~---aGk~Vl-~EKP~a   98 (387)
T 3moi_A           68 VYIASPHQFHCEHVVQASE---QGLHII-VEKPLT   98 (387)
T ss_dssp             EEECSCGGGHHHHHHHHHH---TTCEEE-ECSCCC
T ss_pred             EEEcCCcHHHHHHHHHHHH---CCCcee-eeCCcc
Confidence            9999998877666655443   355544 444443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.83  E-value=0.00013  Score=73.54  Aligned_cols=92  Identities=16%  Similarity=0.225  Sum_probs=63.4

Q ss_pred             CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      +++||+|||+|.||.. .+..|.+.. +.+|. ++++++++++   +..            .++.+++|.++++.  +.|
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~~---~~~------------~~~~~~~~~~~ll~~~~~D   69 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVP-GLNLAFVASRDEEKVK---RDL------------PDVTVIASPEAAVQHPDVD   69 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTST-TEEEEEEECSCHHHHH---HHC------------TTSEEESCHHHHHTCTTCS
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHHHH---hhC------------CCCcEECCHHHHhcCCCCC
Confidence            3579999999999996 666666552 26775 7899987654   211            12456789999877  789


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        70 ~V~i~tp~~~H~~~~~~al~---aGk~Vl-~EKPla  101 (364)
T 3e82_A           70 LVVIASPNATHAPLARLALN---AGKHVV-VDKPFT  101 (364)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred             EEEEeCChHHHHHHHHHHHH---CCCcEE-EeCCCc
Confidence            99999998877666655433   455554 556443

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.82  E-value=4.9e-05  Score=78.47  Aligned_cols=97  Identities=9%  Similarity=0.151  Sum_probs=67.8

Q ss_pred             CCCeEEEECcchHHH-HHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012720          126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKV-YMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~-~iA~~La~aG~~~~V-~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a  200 (458)
                      +++||+|||+|.||. .++..|.+.+ +.+| .++++++++++.+.+. +...         .++..++|.++++.  +.
T Consensus        82 ~~irigiIG~G~~g~~~~~~~l~~~~-~~~lvav~d~~~~~~~~~a~~~g~~~---------~~~~~~~~~~~ll~~~~v  151 (433)
T 1h6d_A           82 RRFGYAIVGLGKYALNQILPGFAGCQ-HSRIEALVSGNAEKAKIVAAEYGVDP---------RKIYDYSNFDKIAKDPKI  151 (433)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCS-SEEEEEEECSCHHHHHHHHHHTTCCG---------GGEECSSSGGGGGGCTTC
T ss_pred             CceEEEEECCcHHHHHHHHHHHhhCC-CcEEEEEEcCCHHHHHHHHHHhCCCc---------ccccccCCHHHHhcCCCC
Confidence            457999999999997 8998887653 2665 5889999888777654 2110         12334568888776  78


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |+|++|+|.....+++.....   .|..|+ +-|-+
T Consensus       152 D~V~iatp~~~h~~~~~~al~---aGk~Vl-~EKPl  183 (433)
T 1h6d_A          152 DAVYIILPNSLHAEFAIRAFK---AGKHVM-CEKPM  183 (433)
T ss_dssp             CEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSC
T ss_pred             CEEEEcCCchhHHHHHHHHHH---CCCcEE-EcCCC
Confidence            999999999887776665443   455544 45534

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.79  E-value=9.6e-05  Score=72.24  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=72.7

Q ss_pred             cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      .+.+||+|+|+ |.||...+..+.+.|  +++ ++..++.+.      +..         ..++.+..+++++.+  ++|
T Consensus         5 ~~~~rVaViG~sG~~G~~~~~~l~~~g--~~~-V~~V~p~~~------g~~---------~~G~~vy~sl~el~~~~~~D   66 (288)
T 2nu8_A            5 DKNTKVICQGFTGSQGTFHSEQAIAYG--TKM-VGGVTPGKG------GTT---------HLGLPVFNTVREAVAATGAT   66 (288)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHT--CEE-EEEECTTCT------TCE---------ETTEEEESSHHHHHHHHCCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCC--CeE-EEEeCCCcc------cce---------eCCeeccCCHHHHhhcCCCC
Confidence            34679999998 999999999999888  773 344443211      000         013567788988877  899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~  250 (458)
                      ++++++|...+.+++.+..+. . -..+|.++.|+..+..+.+.+..++
T Consensus        67 ~viI~tP~~~~~~~~~ea~~~-G-i~~iVi~t~G~~~~~~~~l~~~A~~  113 (288)
T 2nu8_A           67 ASVIYVPAPFCKDSILEAIDA-G-IKLIITITEGIPTLDMLTVKVKLDE  113 (288)
T ss_dssp             EEEECCCGGGHHHHHHHHHHT-T-CSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred             EEEEecCHHHHHHHHHHHHHC-C-CCEEEEECCCCCHHHHHHHHHHHHH
Confidence            999999999998888876653 1 1244557778866543445554444

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.78  E-value=7e-05  Score=76.55  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=69.3

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcC-------CCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKK-------SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT  191 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG-------~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~  191 (458)
                      ..+.|.+++||||||+|.||...+..|.+.+       .+.+|. ++|+++++++++.++.-            ..++++
T Consensus        19 ~~~~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~------------~~~~y~   86 (412)
T 4gqa_A           19 YFQSMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLG------------AEKAYG   86 (412)
T ss_dssp             ------CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHT------------CSEEES
T ss_pred             ccccccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcC------------CCeEEC
Confidence            3456766789999999999999888887642       013554 78999999888876421            014667


Q ss_pred             CHHhhcC--CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          192 DAKTALL--GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       192 ~~~ea~~--~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      |.+++++  +.|+|++|+|.....++....+.   .|..|+ +-|-+..
T Consensus        87 d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKP~a~  131 (412)
T 4gqa_A           87 DWRELVNDPQVDVVDITSPNHLHYTMAMAAIA---AGKHVY-CEKPLAV  131 (412)
T ss_dssp             SHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEE-EESCSCS
T ss_pred             CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---cCCCeE-eecCCcC
Confidence            8988775  68999999998877766655443   355543 5665554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.77  E-value=2.1e-05  Score=80.49  Aligned_cols=105  Identities=14%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC---CCce----E------EeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL---PENV----I------ATTDA  193 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l---~~~i----~------a~~~~  193 (458)
                      ..+|+|||+|.+|..++..+...|  .+|+++|+++++.+.+.+.|.....+.....   ..+.    .      ...++
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            579999999999999999999888  8999999999877777554421100000000   0000    0      00024


Q ss_pred             HhhcCCCCEEEEc--CccccHHHHH-HhhhhcCCCCCeEEEec
Q 012720          194 KTALLGADYCLHA--MPVQFSSSFL-EGISDYVDPGLPFISLS  233 (458)
Q Consensus       194 ~ea~~~aDiVila--Vp~~~v~~vl-~~i~~~l~~~~ivV~~s  233 (458)
                      ++.+.++|+||.+  +|......++ ++....++++.+||+++
T Consensus       250 ~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence            5667789999999  4421111111 23344577899999987

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.76  E-value=1.6e-05  Score=80.73  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEE--eCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIA--TTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiV  203 (458)
                      .++|+|||+|.+|..++..+...|  .+|+++||++++.+.+.+. |....          ...  ..++++.++++|+|
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~g~~~~----------~~~~~~~~l~~~l~~aDvV  235 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEFCGRIH----------TRYSSAYELEGAVKRADLV  235 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTTSSE----------EEECCHHHHHHHHHHCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhcCCeeE----------eccCCHHHHHHHHcCCCEE
Confidence            579999999999999999999988  8999999999888777653 32100          000  12455667889999


Q ss_pred             EEcCcccc--HHHH-HHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQF--SSSF-LEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~--v~~v-l~~i~~~l~~~~ivV~~s  233 (458)
                      |.|++...  ...+ .++..+.++++.+||+++
T Consensus       236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             EECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            99885322  1111 233455678899999886

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.76  E-value=0.00015  Score=75.04  Aligned_cols=98  Identities=12%  Similarity=0.105  Sum_probs=67.8

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh----cCCCccCCCCCCCCceEEeC----CH
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK----HCNCRYFPEQKLPENVIATT----DA  193 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~----g~~~~~~~~~~l~~~i~a~~----~~  193 (458)
                      .+|+++||+|||+|.||...+..|.+.. +.+|. ++++++++++.+.+.    |.          + ...+.+    |.
T Consensus        16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~~-~~~lvav~d~~~~~~~~~a~~~~~~g~----------~-~~~~~~~~~~~~   83 (444)
T 2ixa_A           16 FNPKKVRIAFIAVGLRGQTHVENMARRD-DVEIVAFADPDPYMVGRAQEILKKNGK----------K-PAKVFGNGNDDY   83 (444)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSCHHHHHHHHHHHHHTTC----------C-CCEEECSSTTTH
T ss_pred             CCCCCceEEEEecCHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHHHHHhcCC----------C-CCceeccCCCCH
Confidence            4455689999999999999999988753 26764 789999888776542    21          0 134566    88


Q ss_pred             HhhcC--CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          194 KTALL--GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       194 ~ea~~--~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +++++  +.|+|++|+|.....+++....+   .|..|+ +-|-+
T Consensus        84 ~~ll~~~~vD~V~i~tp~~~h~~~~~~al~---aGkhV~-~EKP~  124 (444)
T 2ixa_A           84 KNMLKDKNIDAVFVSSPWEWHHEHGVAAMK---AGKIVG-MEVSG  124 (444)
T ss_dssp             HHHTTCTTCCEEEECCCGGGHHHHHHHHHH---TTCEEE-ECCCC
T ss_pred             HHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---CCCeEE-EeCCC
Confidence            88876  58999999998777666655433   465554 44543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.74  E-value=7.5e-05  Score=74.26  Aligned_cols=100  Identities=20%  Similarity=0.196  Sum_probs=65.8

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHH--HHHhhcCCCccCCCCCCCCceEE---eCCHHhhcCCC
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQ--SINEKHCNCRYFPEQKLPENVIA---TTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e--~l~~~g~~~~~~~~~~l~~~i~a---~~~~~ea~~~a  200 (458)
                      +|||+|+| +|.+|..++..|+..|..++|.++|++++...  .+....          .+..+..   ++|.+++++++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~----------~~~~v~~~~~t~d~~~al~ga   77 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMD----------TGAVVRGFLGQQQLEAALTGM   77 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSC----------SSCEEEEEESHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhccc----------ccceEEEEeCCCCHHHHcCCC
Confidence            57999999 79999999999998763358999998765221  222211          1112333   34677889999


Q ss_pred             CEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+||++....                .+.++++.+.++- ++..|+..+|-++
T Consensus        78 DvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SNPv~  129 (326)
T 1smk_A           78 DLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISNPVN  129 (326)
T ss_dssp             SEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH
T ss_pred             CEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECCchH
Confidence            9999998521                1444555555544 4566666776544

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.72  E-value=9.8e-05  Score=75.80  Aligned_cols=98  Identities=14%  Similarity=0.193  Sum_probs=67.7

Q ss_pred             cCCCeEEEECcch---HHHHHHHHHHhcCCCCeEE--EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          125 ERTNKVVVLGGGS---FGTAMAAHVANKKSQLKVY--MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       125 ~~~~kI~IIGaG~---mG~~iA~~La~aG~~~~V~--v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      |+++||+|||+|.   ||...+..+...+ +++|.  ++++++++++++.+. |..           ..++++|.++++.
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~-~~~lva~v~d~~~~~a~~~a~~~g~~-----------~~~~~~~~~~ll~  102 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDD-HYELVAGALSSTPEKAEASGRELGLD-----------PSRVYSDFKEMAI  102 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTS-CEEEEEEECCSSHHHHHHHHHHHTCC-----------GGGBCSCHHHHHH
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHcCCC-----------cccccCCHHHHHh
Confidence            4557999999999   9999888877665 25665  679999988877664 211           0134568888765


Q ss_pred             C-------CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          199 G-------ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       199 ~-------aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +       .|+|++|+|.....+++....   +.|..|+ |-|-+..
T Consensus       103 ~~~~~~~~vD~V~I~tp~~~H~~~~~~al---~aGkhVl-~EKPla~  145 (417)
T 3v5n_A          103 REAKLKNGIEAVAIVTPNHVHYAAAKEFL---KRGIHVI-CDKPLTS  145 (417)
T ss_dssp             HHHHCTTCCSEEEECSCTTSHHHHHHHHH---TTTCEEE-EESSSCS
T ss_pred             cccccCCCCcEEEECCCcHHHHHHHHHHH---hCCCeEE-EECCCcC
Confidence            4       899999999887777665543   3465544 5555543

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.71  E-value=4.5e-05  Score=75.59  Aligned_cols=86  Identities=12%  Similarity=0.129  Sum_probs=59.4

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +++||+|||+|+||..++..|.+.+ +.++ .+++++++.  .+   +            .++..++|.++++.++|+||
T Consensus         2 ~~irV~IiG~G~mG~~~~~~l~~~~-~~elvav~d~~~~~--~~---~------------~gv~~~~d~~~ll~~~DvVi   63 (320)
T 1f06_A            2 TNIRVAIVGYGNLGRSVEKLIAKQP-DMDLVGIFSRRATL--DT---K------------TPVFDVADVDKHADDVDVLF   63 (320)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEEESSSCC--SS---S------------SCEEEGGGGGGTTTTCSEEE
T ss_pred             CCCEEEEEeecHHHHHHHHHHhcCC-CCEEEEEEcCCHHH--hh---c------------CCCceeCCHHHHhcCCCEEE
Confidence            4579999999999999999998764 2565 478887542  11   1            13556678888777899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +|+|.....+.+..   .++.|..+|..
T Consensus        64 iatp~~~h~~~~~~---al~aG~~Vv~e   88 (320)
T 1f06_A           64 LCMGSATDIPEQAP---KFAQFACTVDT   88 (320)
T ss_dssp             ECSCTTTHHHHHHH---HHTTTSEEECC
T ss_pred             EcCCcHHHHHHHHH---HHHCCCEEEEC
Confidence            99998754443332   33346666543

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.71  E-value=8.7e-05  Score=64.91  Aligned_cols=91  Identities=8%  Similarity=0.028  Sum_probs=64.8

Q ss_pred             hhcCCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       123 ~~~~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      ++.+..+|+|||+    |.+|..++.+|.+.|  ++  +|+.++.. +.+                .++.+..+++|+..
T Consensus        18 ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G--~~--v~~Vnp~~-~~i----------------~G~~~y~sl~~l~~   76 (144)
T 2d59_A           18 ILTRYKKIALVGASPKPERDANIVMKYLLEHG--YD--VYPVNPKY-EEV----------------LGRKCYPSVLDIPD   76 (144)
T ss_dssp             HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTT--CE--EEEECTTC-SEE----------------TTEECBSSGGGCSS
T ss_pred             HHcCCCEEEEEccCCCCCchHHHHHHHHHHCC--CE--EEEECCCC-CeE----------------CCeeccCCHHHcCC
Confidence            4433578999999    799999999999998  87  55555531 111                13456668888777


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ..|++++++|...+.++++++...-. +.+ + ++.|..
T Consensus        77 ~vDlvvi~vp~~~~~~vv~~~~~~gi-~~i-~-~~~g~~  112 (144)
T 2d59_A           77 KIEVVDLFVKPKLTMEYVEQAIKKGA-KVV-W-FQYNTY  112 (144)
T ss_dssp             CCSEEEECSCHHHHHHHHHHHHHHTC-SEE-E-ECTTCC
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHHcCC-CEE-E-ECCCch
Confidence            89999999999999999988765322 223 3 555665

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.68  E-value=0.00016  Score=72.01  Aligned_cols=96  Identities=15%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      ++||+|||+| .||...+..|.+.+.+.+| .++|+++++++++.+...            ...+++|.++++.  +.|+
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~------------~~~~~~~~~~ll~~~~vD~   85 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG------------NPAVFDSYEELLESGLVDA   85 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS------------SCEEESCHHHHHHSSCCSE
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC------------CCcccCCHHHHhcCCCCCE
Confidence            4689999999 8999999999876212666 478999998887766421            0246678988775  6899


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      |++|+|.....+++.....   .|..|+ +-|-+..
T Consensus        86 V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  117 (340)
T 1zh8_A           86 VDLTLPVELNLPFIEKALR---KGVHVI-CEKPIST  117 (340)
T ss_dssp             EEECCCGGGHHHHHHHHHH---TTCEEE-EESSSSS
T ss_pred             EEEeCCchHHHHHHHHHHH---CCCcEE-EeCCCCC
Confidence            9999998877766655443   355443 4555543

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.68  E-value=0.00019  Score=71.94  Aligned_cols=92  Identities=11%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      +++||+|||+|.||.. .+..|.+.. +.+|. +++++++++   .+..            .++.+++|.++++.  +.|
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~~---~~~~------------~~~~~~~~~~~ll~~~~vD   67 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLD-EYQISKIMTSRTEEV---KRDF------------PDAEVVHELEEITNDPAIE   67 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCT-TEEEEEEECSCHHHH---HHHC------------TTSEEESSTHHHHTCTTCC
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHHH---HhhC------------CCCceECCHHHHhcCCCCC
Confidence            4579999999999996 566666542 26765 788998652   2211            02456788998877  789


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        68 ~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla   99 (358)
T 3gdo_A           68 LVIVTTPSGLHYEHTMACIQ---AGKHVV-MEKPMT   99 (358)
T ss_dssp             EEEECSCTTTHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred             EEEEcCCcHHHHHHHHHHHH---cCCeEE-EecCCc
Confidence            99999998877666655433   455554 455444

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.67  E-value=4.6e-05  Score=77.07  Aligned_cols=95  Identities=19%  Similarity=0.257  Sum_probs=65.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEE--eCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIA--TTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiV  203 (458)
                      .++|+|+|+|.+|..++..+...|  ++|++++|++++.+.+.+. +...          ....  ..+.+++++++|+|
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~~~~~~~~~~~g~~~----------~~~~~~~~~l~~~~~~~DvV  233 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMG--AQVTILDVNHKRLQYLDDVFGGRV----------ITLTATEANIKKSVQHADLL  233 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTTSE----------EEEECCHHHHHHHHHHCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHhcCceE----------EEecCCHHHHHHHHhCCCEE
Confidence            479999999999999999999999  8999999999887776652 2110          0001  12455667789999


Q ss_pred             EEcCcccc--HHHH-HHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQF--SSSF-LEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~--v~~v-l~~i~~~l~~~~ivV~~s  233 (458)
                      |.|++...  ...+ .++..+.++++..||+++
T Consensus       234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            99998542  1111 234455677788888876

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.65  E-value=6.3e-05  Score=76.48  Aligned_cols=105  Identities=15%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCC---------CCCCceE------EeC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQ---------KLPENVI------ATT  191 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~---------~l~~~i~------a~~  191 (458)
                      ..+|+|+|+|.+|...+..+...|  .+|+++|+++++.+.+.+.|.....+...         .+.....      ...
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            579999999999999999999888  88999999987776666544211100000         0000000      000


Q ss_pred             CHHhhcCCCCEEEEcC--ccccHHHHH-HhhhhcCCCCCeEEEec
Q 012720          192 DAKTALLGADYCLHAM--PVQFSSSFL-EGISDYVDPGLPFISLS  233 (458)
Q Consensus       192 ~~~ea~~~aDiVilaV--p~~~v~~vl-~~i~~~l~~~~ivV~~s  233 (458)
                      ..++.++++|+||.|+  |......++ ++....++++.+||+++
T Consensus       250 ~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          250 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence            1556678999999999  421111111 33445578899999887

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.64  E-value=5.9e-05  Score=73.52  Aligned_cols=94  Identities=10%  Similarity=0.112  Sum_probs=65.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|+|+|.+|.+++..|++.|  . +|++++|+.++++++.+.... .        ..+.+. +.+++..++|+||.
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~~~~a~~la~~~~~-~--------~~~~~~-~~~~l~~~aDiIIn  193 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQ--PASITVTNRTFAKAEQLAELVAA-Y--------GEVKAQ-AFEQLKQSYDVIIN  193 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTC--CSEEEEEESSHHHHHHHHHHHGG-G--------SCEEEE-EGGGCCSCEEEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhc-c--------CCeeEe-eHHHhcCCCCEEEE
Confidence            578999999999999999999998  6 899999999988887664211 0        012332 34454478999999


Q ss_pred             cCccccHHHHHHhh-hhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i-~~~l~~~~ivV~~s  233 (458)
                      |+|.....+.. .+ ...++++.+|+++.
T Consensus       194 aTp~gm~~~~~-~l~~~~l~~~~~V~Dlv  221 (281)
T 3o8q_A          194 STSASLDGELP-AIDPVIFSSRSVCYDMM  221 (281)
T ss_dssp             CSCCCC----C-SCCGGGEEEEEEEEESC
T ss_pred             cCcCCCCCCCC-CCCHHHhCcCCEEEEec
Confidence            99974322110 11 23456778888986

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.64  E-value=4.4e-05  Score=66.55  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHH-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAV-CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       126 ~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      +..+|+|||+    |.+|..++.+|.+.|  ++  +|.+++.+ .+.+                .++.+..+++|+.+..
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G--~~--v~~vnp~~~~~~i----------------~G~~~~~sl~el~~~v   71 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQG--YR--VLPVNPRFQGEEL----------------FGEEAVASLLDLKEPV   71 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTT--CE--EEEECGGGTTSEE----------------TTEECBSSGGGCCSCC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCC--CE--EEEeCCCcccCcC----------------CCEEecCCHHHCCCCC
Confidence            3578999999    899999999999999  86  66666642 1111                1355666888877789


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |++++++|...+.++++++.+.-- +.++  ++.|..
T Consensus        72 Dlavi~vp~~~~~~v~~~~~~~gi-~~i~--~~~g~~  105 (140)
T 1iuk_A           72 DILDVFRPPSALMDHLPEVLALRP-GLVW--LQSGIR  105 (140)
T ss_dssp             SEEEECSCHHHHTTTHHHHHHHCC-SCEE--ECTTCC
T ss_pred             CEEEEEeCHHHHHHHHHHHHHcCC-CEEE--EcCCcC
Confidence            999999999888888877655322 3344  344555

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.63  E-value=6.2e-05  Score=72.82  Aligned_cols=94  Identities=16%  Similarity=0.287  Sum_probs=62.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVil  205 (458)
                      .++|.|+|+|.||.+++..|++.|  .+|++|+|+.++++.+.+....  + .      .+.+. +.+++.+ ++|+||.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G--~~v~v~~R~~~~a~~l~~~~~~--~-~------~~~~~-~~~~~~~~~~DivIn  186 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQP--Y-G------NIQAV-SMDSIPLQTYDLVIN  186 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGG--G-S------CEEEE-EGGGCCCSCCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHccc--c-C------CeEEe-eHHHhccCCCCEEEE
Confidence            578999999999999999999999  9999999999888887653110  0 0      12222 3444323 8999999


Q ss_pred             cCccccHHHHHHhh-hhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i-~~~l~~~~ivV~~s  233 (458)
                      |+|......+ ..+ ...++++.+++++.
T Consensus       187 ~t~~~~~~~~-~~i~~~~l~~~~~v~D~~  214 (272)
T 1p77_A          187 ATSAGLSGGT-ASVDAEILKLGSAFYDMQ  214 (272)
T ss_dssp             CCCC--------CCCHHHHHHCSCEEESC
T ss_pred             CCCCCCCCCC-CCCCHHHcCCCCEEEEee
Confidence            9996543222 111 11234567888876

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.63  E-value=7.1e-05  Score=76.24  Aligned_cols=99  Identities=17%  Similarity=0.172  Sum_probs=69.2

Q ss_pred             cCCCeEEEECcch---HHHHHHHHHHhcCCCCeEE--EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-
Q 012720          125 ERTNKVVVLGGGS---FGTAMAAHVANKKSQLKVY--MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-  198 (458)
Q Consensus       125 ~~~~kI~IIGaG~---mG~~iA~~La~aG~~~~V~--v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-  198 (458)
                      |+++||+|||+|.   ||...+..+...+ +.+|.  ++++++++++.+.+....         + ...+++|.++++. 
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~-~~~lva~v~d~~~~~a~~~a~~~g~---------~-~~~~~~~~~~ll~~   78 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDN-TFVLVAGAFDIDPIRGSAFGEQLGV---------D-SERCYADYLSMFEQ   78 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGG-SEEEEEEECCSSHHHHHHHHHHTTC---------C-GGGBCSSHHHHHHH
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCC-CeEEEEEEeCCCHHHHHHHHHHhCC---------C-cceeeCCHHHHHhc
Confidence            4557999999999   9999988887765 25665  579999988887664210         0 0134568888765 


Q ss_pred             ------CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          199 ------GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       199 ------~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                            +.|+|++|+|.....+++...+.   .|..|+ +-|-+..
T Consensus        79 ~~~~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  120 (398)
T 3dty_A           79 EARRADGIQAVSIATPNGTHYSITKAALE---AGLHVV-CEKPLCF  120 (398)
T ss_dssp             HTTCTTCCSEEEEESCGGGHHHHHHHHHH---TTCEEE-ECSCSCS
T ss_pred             ccccCCCCCEEEECCCcHHHHHHHHHHHH---CCCeEE-EeCCCcC
Confidence                  49999999999877776655544   355544 5555543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.62  E-value=0.00023  Score=74.52  Aligned_cols=85  Identities=9%  Similarity=0.042  Sum_probs=64.0

Q ss_pred             hcCCCeEEEECc----chHHHHHHHHHHhc-CCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhh
Q 012720          124 LERTNKVVVLGG----GSFGTAMAAHVANK-KSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       124 ~~~~~kI~IIGa----G~mG~~iA~~La~a-G~~~~V~-v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      +|+++||+|||+    |.||..++..|.+. . +.+|+ ++++++++++.+.+. |.           +.+.+++|.+++
T Consensus        36 ~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~-~~~lvav~d~~~~~a~~~a~~~g~-----------~~~~~~~d~~el  103 (479)
T 2nvw_A           36 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSS-QFQIVALYNPTLKSSLQTIEQLQL-----------KHATGFDSLESF  103 (479)
T ss_dssp             GGCCEEEEEECCCSTTSHHHHTHHHHHHHTTT-TEEEEEEECSCHHHHHHHHHHTTC-----------TTCEEESCHHHH
T ss_pred             CCCcCEEEEEcccCCCCHHHHHHHHHHHhcCC-CeEEEEEEeCCHHHHHHHHHHcCC-----------CcceeeCCHHHH
Confidence            445689999999    99999999999886 2 26764 789999988877664 21           023467789888


Q ss_pred             cC--CCCEEEEcCccccHHHHHHhhh
Q 012720          197 LL--GADYCLHAMPVQFSSSFLEGIS  220 (458)
Q Consensus       197 ~~--~aDiVilaVp~~~v~~vl~~i~  220 (458)
                      ++  +.|+|++|+|.....+++...+
T Consensus       104 l~~~~vD~V~I~tp~~~H~~~~~~al  129 (479)
T 2nvw_A          104 AQYKDIDMIVVSVKVPEHYEVVKNIL  129 (479)
T ss_dssp             HHCTTCSEEEECSCHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence            74  6899999999877666655443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.60  E-value=6.1e-05  Score=70.76  Aligned_cols=96  Identities=9%  Similarity=0.032  Sum_probs=62.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil  205 (458)
                      .++|.|+|+|.+|..++..|.+.|  + |++++++++.++.+. .+.... ..+..-      ...++++ +.++|.||+
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g--~-v~vid~~~~~~~~~~-~~~~~i-~gd~~~------~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVRKKVLR-SGANFV-HGDPTR------VSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSE--E-EEEESCGGGHHHHHH-TTCEEE-ESCTTC------HHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCC--e-EEEEECCHHHHHHHh-cCCeEE-EcCCCC------HHHHHhcCcchhcEEEE
Confidence            578999999999999999999988  8 999999998887776 442111 000000      0112233 679999999


Q ss_pred             cCccccHHHHHHhhhhcCCCC-CeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPG-LPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~-~ivV~~s  233 (458)
                      +++.+...-.+......+.++ .+++.+.
T Consensus        78 ~~~~d~~n~~~~~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           78 DLESDSETIHCILGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             CCSCHHHHHHHHHHHHHHCSSSEEEEECS
T ss_pred             cCCCcHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            999765443333334444555 3444333

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.59  E-value=0.00017  Score=73.86  Aligned_cols=95  Identities=13%  Similarity=0.206  Sum_probs=64.5

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      ..++|+|||+|.||..++..|...|  . +|++++|+.++++.+.+. |..            +....++.+.+.++|+|
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G--~~~V~v~~r~~~ra~~la~~~g~~------------~~~~~~l~~~l~~aDvV  231 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRG--VRAVLVANRTYERAVELARDLGGE------------AVRFDELVDHLARSDVV  231 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHC--CSEEEEECSSHHHHHHHHHHHTCE------------ECCGGGHHHHHHTCSEE
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHcCCc------------eecHHhHHHHhcCCCEE
Confidence            3579999999999999999999988  7 899999999887555442 311            00013566677899999


Q ss_pred             EEcCcccc-H--HHHHHh-h-hhcCCCCCeEEEecc
Q 012720          204 LHAMPVQF-S--SSFLEG-I-SDYVDPGLPFISLSK  234 (458)
Q Consensus       204 ilaVp~~~-v--~~vl~~-i-~~~l~~~~ivV~~sn  234 (458)
                      |.|++... +  .+.+.. + ...-.++.+++++..
T Consensus       232 i~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          232 VSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             EECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             EEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence            99999643 2  233433 2 111123456677653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.59  E-value=0.00016  Score=69.75  Aligned_cols=94  Identities=13%  Similarity=0.188  Sum_probs=65.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil  205 (458)
                      .+++.|+|+|.||.+++..|++.|  .+|++++|+.++++.+.+.-..  +       ..+.+ .+.+++. .++|+||.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~~~~~~~la~~~~~--~-------~~~~~-~~~~~~~~~~~DivVn  186 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAH--T-------GSIQA-LSMDELEGHEFDLIIN  186 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGG--G-------SSEEE-CCSGGGTTCCCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHhhc--c-------CCeeE-ecHHHhccCCCCEEEE
Confidence            578999999999999999999999  8999999999888777653100  0       01222 2333332 58999999


Q ss_pred             cCccccHHHHHHhh-hhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGI-SDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i-~~~l~~~~ivV~~s  233 (458)
                      |++.....++ ..+ ...++++.+++++.
T Consensus       187 ~t~~~~~~~~-~~i~~~~l~~~~~v~D~~  214 (271)
T 1nyt_A          187 ATSSGISGDI-PAIPSSLIHPGIYCYDMF  214 (271)
T ss_dssp             CCSCGGGTCC-CCCCGGGCCTTCEEEESC
T ss_pred             CCCCCCCCCC-CCCCHHHcCCCCEEEEec
Confidence            9996432111 112 23356788888876

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.58  E-value=7.1e-05  Score=77.99  Aligned_cols=77  Identities=17%  Similarity=0.269  Sum_probs=56.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCc-cCCCCCCCCceEEeCCHHhh-cCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR-YFPEQKLPENVIATTDAKTA-LLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~-~~~~~~l~~~i~a~~~~~ea-~~~aDiVi  204 (458)
                      .|||.|+|+|.+|..+|..|...|  |+|++.+++++.++.+.+.. ... +.++..-+      +.+++| +++||++|
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~--~~v~vId~d~~~~~~~~~~~-~~~~i~Gd~~~~------~~L~~Agi~~ad~~i   73 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGEN--NDITIVDKDGDRLRELQDKY-DLRVVNGHASHP------DVLHEAGAQDADMLV   73 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTT--EEEEEEESCHHHHHHHHHHS-SCEEEESCTTCH------HHHHHHTTTTCSEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHhc-CcEEEEEcCCCH------HHHHhcCCCcCCEEE
Confidence            589999999999999999999988  99999999999998887641 111 11111000      123333 67899999


Q ss_pred             EcCccccH
Q 012720          205 HAMPVQFS  212 (458)
Q Consensus       205 laVp~~~v  212 (458)
                      .++.++.+
T Consensus        74 a~t~~De~   81 (461)
T 4g65_A           74 AVTNTDET   81 (461)
T ss_dssp             ECCSCHHH
T ss_pred             EEcCChHH
Confidence            98887643

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=97.55  E-value=0.00025  Score=71.13  Aligned_cols=95  Identities=15%  Similarity=0.064  Sum_probs=66.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCC------CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKS------QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--  198 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~------~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--  198 (458)
                      .||||||+|.||...+..+.+...      ..+|. ++|+++++++.+.++.-.            ..+.+|.++++.  
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~------------~~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW------------STTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC------------SEEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC------------CcccCCHHHHhcCC
Confidence            589999999999988887765420      12554 789999988887764210            146679999875  


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +.|+|++|+|.....++....+.   .|..| .|-|-+..
T Consensus        75 ~iDaV~I~tP~~~H~~~~~~al~---aGkhV-l~EKPla~  110 (390)
T 4h3v_A           75 DVQLVDVCTPGDSHAEIAIAALE---AGKHV-LCEKPLAN  110 (390)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHHH---TTCEE-EEESSSCS
T ss_pred             CCCEEEEeCChHHHHHHHHHHHH---cCCCc-eeecCccc
Confidence            57999999999877776655443   35554 46666654

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.54  E-value=8e-05  Score=77.87  Aligned_cols=78  Identities=21%  Similarity=0.341  Sum_probs=50.0

Q ss_pred             CeEEEECcchHHHHH--HHHHHhcC----CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          128 NKVVVLGGGSFGTAM--AAHVANKK----SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       128 ~kI~IIGaG~mG~~i--A~~La~aG----~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      |||+|||+|+.|.+.  ...++...    ...+|.++|.++++++........  .......+..+..++|.++++++||
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~--~~~~~~~~~~i~~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARK--YVEELNSPVKVVKTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHH--HHHHHTCCCEEEEESCHHHHHTTCS
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHH--HHHHcCCCeEEEEeCCHHHHhCCCC
Confidence            799999999988652  22233321    124799999999876543221100  0000112335788899999999999


Q ss_pred             EEEEcC
Q 012720          202 YCLHAM  207 (458)
Q Consensus       202 iVilaV  207 (458)
                      +||++.
T Consensus        79 ~Vi~~~   84 (477)
T 3u95_A           79 FIINTA   84 (477)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            999986

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.53  E-value=0.00023  Score=71.94  Aligned_cols=95  Identities=15%  Similarity=0.229  Sum_probs=66.2

Q ss_pred             CCCeEEEEC-cchHHHH-HH----HHHHhcCCCCeE----------EEEeCCHHHHHHHHhhcCCCccCCCCCCCCce-E
Q 012720          126 RTNKVVVLG-GGSFGTA-MA----AHVANKKSQLKV----------YMLMRDPAVCQSINEKHCNCRYFPEQKLPENV-I  188 (458)
Q Consensus       126 ~~~kI~IIG-aG~mG~~-iA----~~La~aG~~~~V----------~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i-~  188 (458)
                      +.+||+||| +|.||.. .+    ..+.+.+. ..+          .+++|++++++.+.+...             + .
T Consensus         5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~-~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~-------------~~~   70 (383)
T 3oqb_A            5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGG-VRLKNGDRIMPDPILVGRSAEKVEALAKRFN-------------IAR   70 (383)
T ss_dssp             EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTS-EECTTSCEEEEEEEEECSSSHHHHHHHHHTT-------------CCC
T ss_pred             ceeEEEEEeccchhhhhhhHHHHHHHHhhcCc-eeecCCcccceeeEEEcCCHHHHHHHHHHhC-------------CCc
Confidence            357999999 9999998 66    66665541 222          389999998888766421             1 3


Q ss_pred             EeCCHHhhcC--CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          189 ATTDAKTALL--GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       189 a~~~~~ea~~--~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +++|.++++.  +.|+|++|+|.....+++....   +.|..|+ +-|-+..
T Consensus        71 ~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al---~~Gk~V~-~EKP~a~  118 (383)
T 3oqb_A           71 WTTDLDAALADKNDTMFFDAATTQARPGLLTQAI---NAGKHVY-CEKPIAT  118 (383)
T ss_dssp             EESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHH---TTTCEEE-ECSCSCS
T ss_pred             ccCCHHHHhcCCCCCEEEECCCchHHHHHHHHHH---HCCCeEE-EcCCCCC
Confidence            5678988875  4899999999877666654443   3466655 6665543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.53  E-value=5.9e-05  Score=70.58  Aligned_cols=80  Identities=15%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             CCeEEEECcchHHHHHHHH--HHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAH--VANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~--La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .++|+|||+|++|..++..  +...|  +++. ++|.++++.....         .+.    .+...+++++.+++.|++
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g--~~iVg~~D~dp~k~g~~i---------~gv----~V~~~~dl~eli~~~D~V  149 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNN--TKISMAFDINESKIGTEV---------GGV----PVYNLDDLEQHVKDESVA  149 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC--------CCEEEEEESCTTTTTCEE---------TTE----EEEEGGGHHHHCSSCCEE
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCC--cEEEEEEeCCHHHHHhHh---------cCC----eeechhhHHHHHHhCCEE
Confidence            4789999999999999994  33445  6665 6798886432111         110    234456788887666999


Q ss_pred             EEcCccccHHHHHHhhhh
Q 012720          204 LHAMPVQFSSSFLEGISD  221 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~  221 (458)
                      ++|+|+....++++.+..
T Consensus       150 iIAvPs~~~~ei~~~l~~  167 (215)
T 2vt3_A          150 ILTVPAVAAQSITDRLVA  167 (215)
T ss_dssp             EECSCHHHHHHHHHHHHH
T ss_pred             EEecCchhHHHHHHHHHH
Confidence            999998777777776644

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.53  E-value=0.0005  Score=67.88  Aligned_cols=98  Identities=22%  Similarity=0.294  Sum_probs=63.5

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhc-CCCCeEEEEeCCHH---HHHHHHhhcCCCccCCCCCCCCceEEe--CCHHhhcCCC
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANK-KSQLKVYMLMRDPA---VCQSINEKHCNCRYFPEQKLPENVIAT--TDAKTALLGA  200 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~a-G~~~~V~v~~r~~~---~~e~l~~~g~~~~~~~~~~l~~~i~a~--~~~~ea~~~a  200 (458)
                      |||+||| +|.+|..++..|+.. +...++.++|+++.   .+..+..  .        ..+..+...  ++..++++++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~--~--------~~~~~v~~~~~~~~~~~~~~a   70 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSH--I--------PTAVKIKGFSGEDATPALEGA   70 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHT--S--------CSSEEEEEECSSCCHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhC--C--------CCCceEEEecCCCcHHHhCCC
Confidence            6999999 899999999999876 54468999999861   1112221  1        112223331  2445668999


Q ss_pred             CEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          201 DYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       201 DiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |+||++....                -+.++.+.+.++- ++.+++..+|-+
T Consensus        71 Divii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~-p~a~vlvvtNPv  121 (312)
T 3hhp_A           71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPV  121 (312)
T ss_dssp             SEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEecCcc
Confidence            9999987431                1334445565654 567788788744

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.53  E-value=0.00019  Score=72.64  Aligned_cols=106  Identities=11%  Similarity=0.207  Sum_probs=70.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +.||+|||+| +|...+..+.+...++++. +++|+.++++++.+..             ++...+|.++.+.+.|++++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~-------------gv~~~~~~~~l~~~~D~v~i   72 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF-------------GIPLYTSPEQITGMPDIACI   72 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT-------------TCCEESSGGGCCSCCSEEEE
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh-------------CCCEECCHHHHhcCCCEEEE
Confidence            5699999999 8998888777653226665 7899999888887652             24466799999899999999


Q ss_pred             cCccccH----HHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 012720          206 AMPVQFS----SSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       206 aVp~~~v----~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~  250 (458)
                      ++|....    .++....   ++.|..|+ +-|-+..++.+.+.+..++
T Consensus        73 ~~p~~~h~~~~~~~a~~a---l~aGkhVl-~EKPl~~~ea~~l~~~A~~  117 (372)
T 4gmf_A           73 VVRSTVAGGAGTQLARHF---LARGVHVI-QEHPLHPDDISSLQTLAQE  117 (372)
T ss_dssp             CCC--CTTSHHHHHHHHH---HHTTCEEE-EESCCCHHHHHHHHHHHHH
T ss_pred             ECCCcccchhHHHHHHHH---HHcCCcEE-EecCCCHHHHHHHHHHHHH
Confidence            9997543    4444333   33465554 5555654444444443333

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.52  E-value=0.00039  Score=68.28  Aligned_cols=103  Identities=13%  Similarity=0.124  Sum_probs=63.6

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r--~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      |||+|+| +|.+|..++..|+..+...++.++|+  ++++++.....-.+.  .. ...+..+.. ++ .++++++|+||
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~--~~-~~~~~~v~~-~~-~~a~~~aDvVi   75 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG--IA-YDSNTRVRQ-GG-YEDTAGSDVVV   75 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH--HT-TTCCCEEEE-CC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHH--Hh-hCCCcEEEe-CC-HHHhCCCCEEE
Confidence            6999999 99999999999998773236999999  776543321110000  00 001112333 34 56789999999


Q ss_pred             EcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          205 HAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       205 laVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++....                .+.++++.+.++ .++..|+..+|-+
T Consensus        76 ~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SNPv  122 (303)
T 1o6z_A           76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSNPV  122 (303)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCSSH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCChH
Confidence            987521                134444555554 4566777677644

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.52  E-value=0.0003  Score=70.61  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=64.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcC------CCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKK------SQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--  198 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG------~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--  198 (458)
                      -||||||+|.||...+..+....      .+.+|+ ++|+++++++++.++.-.            .++++|.+++++  
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~------------~~~y~d~~ell~~~   93 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF------------EKATADWRALIADP   93 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC------------SEEESCHHHHHHCT
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC------------CeecCCHHHHhcCC
Confidence            47999999999998776664321      014554 789999888887764210            146679988775  


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      +.|+|++|+|.....++....+.   .|..| .|-|-+...
T Consensus        94 ~iDaV~IatP~~~H~~~a~~al~---aGkhV-l~EKPla~~  130 (393)
T 4fb5_A           94 EVDVVSVTTPNQFHAEMAIAALE---AGKHV-WCEKPMAPA  130 (393)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHH---TTCEE-EECSCSCSS
T ss_pred             CCcEEEECCChHHHHHHHHHHHh---cCCeE-EEccCCccc
Confidence            57999999999877776655444   35554 466666543

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.49  E-value=0.00021  Score=69.33  Aligned_cols=150  Identities=12%  Similarity=0.110  Sum_probs=85.3

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      ++|||+|+|+ |.||..++..+.+.. +++|. +++++++...     +.....+-+. .+.++.+++|+++++.++|+|
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~-~~elva~~d~~~~~~~-----g~d~~~~~g~-~~~~v~~~~dl~~~l~~~DvV   76 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALE-GVQLGAALEREGSSLL-----GSDAGELAGA-GKTGVTVQSSLDAVKDDFDVF   76 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHST-TEECCCEECCTTCTTC-----SCCTTCSSSS-SCCSCCEESCSTTTTTSCSEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCchhhh-----hhhHHHHcCC-CcCCceecCCHHHHhcCCCEE
Confidence            4579999998 999999999887543 27777 6777653210     1110000000 012345667888888899999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      |-++....+.+.+.....   .|..+|..+.|+..+.    .+.+.+.-..    ..++..|++...+..          
T Consensus        77 IDft~p~~~~~~~~~a~~---~G~~vVigTtG~~~e~----~~~L~~~a~~----~~vv~a~N~siGvn~----------  135 (273)
T 1dih_A           77 IDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAG----KQAIRDAAAD----IAIVFAANFSVGVNV----------  135 (273)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHH----HHHHHHHTTT----SCEEECSCCCHHHHH----------
T ss_pred             EEcCChHHHHHHHHHHHh---CCCCEEEECCCCCHHH----HHHHHHhcCC----CCEEEEecCcHHHHH----------
Confidence            955555555555544433   4666666555776542    2333333111    246777766542210          


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEE
Q 012720          284 KDRKLANAVQQLLASKHLRIST  305 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~  305 (458)
                       -.+.++.+.+.|. .++.+..
T Consensus       136 -~~~l~~~aa~~~~-~~~diei  155 (273)
T 1dih_A          136 -MLKLLEKAAKVMG-DYTDIEI  155 (273)
T ss_dssp             -HHHHHHHHHHHHT-TTSEEEE
T ss_pred             -HHHHHHHHHHhcC-CCCCEEE
Confidence             1355667777775 2455543

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.48  E-value=0.00031  Score=70.10  Aligned_cols=93  Identities=17%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             CCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhcCC--CC
Q 012720          127 TNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTALLG--AD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~-~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD  201 (458)
                      ++||+|||+|.||. ..+..|.+.. +.+|. +++++  ..+.+.+. +.           .++..++|.++++.+  .|
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~--~~~~~a~~~~~-----------~~~~~~~~~~~ll~~~~~D   67 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIRE-TLEVKTIFDLH--VNEKAAAPFKE-----------KGVNFTADLNELLTDPEIE   67 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCT-TEEEEEEECTT--CCHHHHHHHHT-----------TTCEEESCTHHHHSCTTCC
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhCC-CeEEEEEECCC--HHHHHHHhhCC-----------CCCeEECCHHHHhcCCCCC
Confidence            57999999999998 4555565542 26775 77887  23344332 11           124677899988765  89


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|++|+|.....+++.....   .|..|+ +-|-+.
T Consensus        68 ~V~i~tp~~~h~~~~~~al~---aGk~Vl-~EKP~a   99 (349)
T 3i23_A           68 LITICTPAHTHYDLAKQAIL---AGKSVI-VEKPFC   99 (349)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-ECSCSC
T ss_pred             EEEEeCCcHHHHHHHHHHHH---cCCEEE-EECCCc
Confidence            99999999877766655443   455554 455554

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.48  E-value=0.0002  Score=74.02  Aligned_cols=83  Identities=11%  Similarity=0.006  Sum_probs=62.2

Q ss_pred             CCCeEEEECc----chHHHHHHHHHHhc-CCCCeE-EEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-
Q 012720          126 RTNKVVVLGG----GSFGTAMAAHVANK-KSQLKV-YMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-  198 (458)
Q Consensus       126 ~~~kI~IIGa----G~mG~~iA~~La~a-G~~~~V-~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-  198 (458)
                      +++||+|||+    |.||..++..|.+. . +.+| .++++++++++.+.+....         + .+.+++|.++++. 
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~-~~~lvav~d~~~~~~~~~a~~~g~---------~-~~~~~~~~~~ll~~   87 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSS-QFQITALYSPKIETSIATIQRLKL---------S-NATAFPTLESFASS   87 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTT-TEEEEEEECSSHHHHHHHHHHTTC---------T-TCEEESSHHHHHHC
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCC-CeEEEEEEeCCHHHHHHHHHHcCC---------C-cceeeCCHHHHhcC
Confidence            3579999999    99999999999886 2 2676 4889999888877664210         0 2356778988875 


Q ss_pred             -CCCEEEEcCccccHHHHHHhh
Q 012720          199 -GADYCLHAMPVQFSSSFLEGI  219 (458)
Q Consensus       199 -~aDiVilaVp~~~v~~vl~~i  219 (458)
                       +.|+|++|+|.....+++...
T Consensus        88 ~~vD~V~i~tp~~~H~~~~~~a  109 (438)
T 3btv_A           88 STIDMIVIAIQVASHYEVVMPL  109 (438)
T ss_dssp             SSCSEEEECSCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCcHHHHHHHHHH
Confidence             689999999987666655544

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.48  E-value=0.00028  Score=72.81  Aligned_cols=109  Identities=14%  Similarity=0.149  Sum_probs=68.2

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh--cCC--CccCCC-CCC-----CCceEEeCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK--HCN--CRYFPE-QKL-----PENVIATTD  192 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~--g~~--~~~~~~-~~l-----~~~i~a~~~  192 (458)
                      +++++||||||+|.||..++..+.+.. +.+|. ++|+++++++...+.  |..  ...... ..+     ...+.+++|
T Consensus        20 ~~k~IRVGIIGaG~iG~~~~~~l~~~~-~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D   98 (446)
T 3upl_A           20 TGKPIRIGLIGAGEMGTDIVTQVARMQ-GIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDD   98 (446)
T ss_dssp             TTCCEEEEEECCSHHHHHHHHHHTTSS-SEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESC
T ss_pred             cCCceEEEEECChHHHHHHHHHHhhCC-CcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECC
Confidence            445679999999999999998887642 25654 678999887776543  310  000000 000     113567889


Q ss_pred             HHhhcC--CCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          193 AKTALL--GADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       193 ~~ea~~--~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .++++.  +.|+|++|+|.. ...++..   ..++.|+.|+...+++
T Consensus        99 ~eeLL~d~dIDaVviaTp~p~~H~e~a~---~AL~AGKHVv~~nk~l  142 (446)
T 3upl_A           99 NDLILSNPLIDVIIDATGIPEVGAETGI---AAIRNGKHLVMMNVEA  142 (446)
T ss_dssp             HHHHHTCTTCCEEEECSCCHHHHHHHHH---HHHHTTCEEEECCHHH
T ss_pred             HHHHhcCCCCCEEEEcCCChHHHHHHHH---HHHHcCCcEEecCccc
Confidence            998876  589999999864 3333332   2334577777655433

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.47  E-value=0.00059  Score=66.59  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=72.8

Q ss_pred             cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      .+.+||+|+|+ |.||..++..+.+.|  +++ ++..++...      +..         ..++.+..+++++.+  ++|
T Consensus         5 ~~~~~VaVvGasG~~G~~~~~~l~~~g--~~~-v~~VnP~~~------g~~---------i~G~~vy~sl~el~~~~~~D   66 (288)
T 1oi7_A            5 NRETRVLVQGITGREGQFHTKQMLTYG--TKI-VAGVTPGKG------GME---------VLGVPVYDTVKEAVAHHEVD   66 (288)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHT--CEE-EEEECTTCT------TCE---------ETTEEEESSHHHHHHHSCCS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHcC--CeE-EEEECCCCC------Cce---------ECCEEeeCCHHHHhhcCCCC
Confidence            34679999998 999999999999888  773 344433210      100         124667788888777  899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCC-eEEEeccCCCcchhhhHHHHHHH
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGL-PFISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~-ivV~~snGi~~~t~~~l~e~l~~  250 (458)
                      ++++++|...+.++++++.+.   +. .+|.++.|+..+..+.+.+..++
T Consensus        67 v~Ii~vp~~~~~~~~~ea~~~---Gi~~vVi~t~G~~~~~~~~l~~~a~~  113 (288)
T 1oi7_A           67 ASIIFVPAPAAADAALEAAHA---GIPLIVLITEGIPTLDMVRAVEEIKA  113 (288)
T ss_dssp             EEEECCCHHHHHHHHHHHHHT---TCSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred             EEEEecCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence            999999999988888887653   32 35557778875443444454444

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.46  E-value=0.00037  Score=69.95  Aligned_cols=92  Identities=14%  Similarity=0.192  Sum_probs=62.6

Q ss_pred             CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC--CC
Q 012720          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG--AD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~--aD  201 (458)
                      +++||+|||+|.||.. .+..|.+.. +.+|. ++++++++   +.+.     +       .++.+++|.++++.+  .|
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~-~~~l~av~d~~~~~---~~~~-----~-------~~~~~~~~~~~ll~~~~vD   67 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTNP-HFELYKIVERSKEL---SKER-----Y-------PQASIVRSFKELTEDPEID   67 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHCT-TEEEEEEECSSCCG---GGTT-----C-------TTSEEESCSHHHHTCTTCC
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhCC-CeEEEEEEcCCHHH---HHHh-----C-------CCCceECCHHHHhcCCCCC
Confidence            4579999999999997 677776652 26775 77888754   2211     0       134677899988765  89


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|++|+|.....+++...+.   .|..|+ +-|-+.
T Consensus        68 ~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKP~a   99 (362)
T 3fhl_A           68 LIVVNTPDNTHYEYAGMALE---AGKNVV-VEKPFT   99 (362)
T ss_dssp             EEEECSCGGGHHHHHHHHHH---TTCEEE-EESSCC
T ss_pred             EEEEeCChHHHHHHHHHHHH---CCCeEE-EecCCC
Confidence            99999998877666655443   355544 455444

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.42  E-value=0.0005  Score=70.59  Aligned_cols=113  Identities=11%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             CCeEEEECcchHHHHH--HHHHHh--cCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGGGSFGTAM--AAHVAN--KKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~i--A~~La~--aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +|||+|||+|.. .+.  ...|+.  .+. ..+|.++|.++++++...........   ..  ..+..++|..+++++||
T Consensus         2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~---~~--~~v~~t~d~~~al~~AD   75 (417)
T 1up7_A            2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK---DR--FKVLISDTFEGAVVDAK   75 (417)
T ss_dssp             CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT---TS--SEEEECSSHHHHHTTCS
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhh---CC--eEEEEeCCHHHHhCCCC
Confidence            589999999985 222  223454  332 36899999999876643221100000   01  34667778878899999


Q ss_pred             EEEEcCccc------------------------------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHH
Q 012720          202 YCLHAMPVQ------------------------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS  245 (458)
Q Consensus       202 iVilaVp~~------------------------------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~  245 (458)
                      +||++.-..                                    .+.++++++.++.  +..++..+|-++     .+.
T Consensus        76 ~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvd-----i~t  148 (417)
T 1up7_A           76 YVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSG-----HIT  148 (417)
T ss_dssp             EEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHH-----HHH
T ss_pred             EEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHH-----HHH
Confidence            999998321                                    1445666677765  789999998553     334


Q ss_pred             HHHHHHh
Q 012720          246 QIIPQAL  252 (458)
Q Consensus       246 e~l~~~l  252 (458)
                      +.+.+..
T Consensus       149 ~a~~k~~  155 (417)
T 1up7_A          149 EFVRNYL  155 (417)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhC
Confidence            4554443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.42  E-value=0.00014  Score=70.33  Aligned_cols=90  Identities=19%  Similarity=0.222  Sum_probs=63.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+++.|||+|.||.+++..|++.|  .+|++++|+.++++++.+.+.              .+. +.++ +.++|+||-|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~~ka~~la~~~~--------------~~~-~~~~-l~~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG--LQVSVLNRSSRGLDFFQRLGC--------------DCF-MEPP-KSAFDLIINA  179 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTHHHHHHHTC--------------EEE-SSCC-SSCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHCCC--------------eEe-cHHH-hccCCEEEEc
Confidence            579999999999999999999999  999999999998888873321              111 2233 3489999999


Q ss_pred             CccccH-HHHH--HhhhhcCCCCCeEEEecc
Q 012720          207 MPVQFS-SSFL--EGISDYVDPGLPFISLSK  234 (458)
Q Consensus       207 Vp~~~v-~~vl--~~i~~~l~~~~ivV~~sn  234 (458)
                      +|.... ...+  +.+...++++.+++++.-
T Consensus       180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          180 TSASLHNELPLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             CTTCCCCSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred             ccCCCCCCCCCChHHHHhhCCCCCEEEEeCC
Confidence            995310 0001  111223456889999873

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.42  E-value=0.00033  Score=73.02  Aligned_cols=91  Identities=13%  Similarity=0.055  Sum_probs=68.7

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..++++|+|+|.+|..+|..|+..|  .+|+++++++...+.....+.              .+ .+.++++..+|+|+.
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~G--A~Viv~D~~~~~a~~Aa~~g~--------------dv-~~lee~~~~aDvVi~  326 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAG--ARVIVTEIDPICALQATMEGL--------------QV-LTLEDVVSEADIFVT  326 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EE-CCGGGTTTTCSEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHhCC--------------cc-CCHHHHHHhcCEEEe
Confidence            3579999999999999999999999  899999999877666655442              12 366778889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +.....+-  -.+....++++.+|+++..+
T Consensus       327 atG~~~vl--~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          327 TTGNKDII--MLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             CSSCSCSB--CHHHHTTSCTTEEEEESSST
T ss_pred             CCCChhhh--hHHHHHhcCCCeEEEEcCCC
Confidence            87653321  11234567888888888754

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.42  E-value=0.00036  Score=69.57  Aligned_cols=52  Identities=25%  Similarity=0.489  Sum_probs=38.4

Q ss_pred             hcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          107 KLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |+|+| |.|... +.+.+ +..||.|||+|..|+.+|..|+.+|. -+++++|++.
T Consensus        17 ~lm~w-Rll~~~-g~~kL-~~~~VlIvGaGGlGs~va~~La~aGV-g~ItlvD~D~   68 (340)
T 3rui_A           17 KLMKW-RILPDL-NLDII-KNTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT   68 (340)
T ss_dssp             HHHHH-HTCTTC-CHHHH-HTCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred             HHHHH-hhcchh-hHHHH-hCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCE
Confidence            56767 344332 22322 25799999999999999999999995 4788998764

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00038  Score=72.55  Aligned_cols=82  Identities=18%  Similarity=0.331  Sum_probs=57.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ++||.|+|+|.+|.+++..|++. |  ++|++++|+.++++.+.+.. .....   .+  .+.-.+++.++++++|+||.
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g--~~V~v~~R~~~ka~~la~~~-~~~~~---~~--D~~d~~~l~~~l~~~DvVIn   94 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDD--INVTVACRTLANAQALAKPS-GSKAI---SL--DVTDDSALDKVLADNDVVIS   94 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHGGG-TCEEE---EC--CTTCHHHHHHHHHTSSEEEE
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHhc-CCcEE---EE--ecCCHHHHHHHHcCCCEEEE
Confidence            56899999999999999999998 5  89999999999888876541 10000   00  00000134456779999999


Q ss_pred             cCccccHHHHH
Q 012720          206 AMPVQFSSSFL  216 (458)
Q Consensus       206 aVp~~~v~~vl  216 (458)
                      |+|......+.
T Consensus        95 ~tp~~~~~~v~  105 (467)
T 2axq_A           95 LIPYTFHPNVV  105 (467)
T ss_dssp             CSCGGGHHHHH
T ss_pred             CCchhhhHHHH
Confidence            99976443333

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.42  E-value=0.00016  Score=73.98  Aligned_cols=103  Identities=16%  Similarity=0.246  Sum_probs=62.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCC-CCCceEEeCCHHhhcCC--CCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQK-LPENVIATTDAKTALLG--ADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-l~~~i~a~~~~~ea~~~--aDi  202 (458)
                      |+||+|+|+|.+|..++..|++.|.- .+|++++|+.++++.+.+.-.. ..-+... ....+.-.+++++++++  +|+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~-~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKA-KGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHH-TTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhh-hcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            47999999999999999999998721 2899999999988877653110 0000000 00000001234455555  899


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ||.|++......+++....   .+..+++++
T Consensus        80 Vin~ag~~~~~~v~~a~l~---~g~~vvD~a  107 (405)
T 4ina_A           80 VLNIALPYQDLTIMEACLR---TGVPYLDTA  107 (405)
T ss_dssp             EEECSCGGGHHHHHHHHHH---HTCCEEESS
T ss_pred             EEECCCcccChHHHHHHHH---hCCCEEEec
Confidence            9999997655555544322   244455543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.41  E-value=0.00021  Score=69.30  Aligned_cols=93  Identities=12%  Similarity=0.139  Sum_probs=65.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi  204 (458)
                      .+++.|+|+|.+|.+++..|++.|  . +|++++|+.++++++.+....          ..+.+. +.++.. .++|+||
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G--~~~v~i~~R~~~~a~~la~~~~~----------~~~~~~-~~~~l~~~~~DivI  186 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAG--PSELVIANRDMAKALALRNELDH----------SRLRIS-RYEALEGQSFDIVV  186 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTC--CSEEEEECSCHHHHHHHHHHHCC----------TTEEEE-CSGGGTTCCCSEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHhcc----------CCeeEe-eHHHhcccCCCEEE
Confidence            578999999999999999999998  5 899999999998888764211          012222 223322 6899999


Q ss_pred             EcCccccHHHHHHhh-hhcCCCCCeEEEec
Q 012720          205 HAMPVQFSSSFLEGI-SDYVDPGLPFISLS  233 (458)
Q Consensus       205 laVp~~~v~~vl~~i-~~~l~~~~ivV~~s  233 (458)
                      -|+|..-..+.. .+ ...++++.+|+++.
T Consensus       187 naTp~gm~~~~~-~i~~~~l~~~~~V~Dlv  215 (272)
T 3pwz_A          187 NATSASLTADLP-PLPADVLGEAALAYELA  215 (272)
T ss_dssp             ECSSGGGGTCCC-CCCGGGGTTCSEEEESS
T ss_pred             ECCCCCCCCCCC-CCCHHHhCcCCEEEEee
Confidence            999964211100 01 23466788899986

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.41  E-value=0.0011  Score=64.75  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=73.9

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a  200 (458)
                      +....+|+|+|+ |.||...+..|.+.|  ++ .++..++...      +.  .       ..++.+..+++++.+  ++
T Consensus        10 ~~~~~~v~V~Gasg~~G~~~~~~l~~~g--~~-~V~~VnP~~~------g~--~-------i~G~~vy~sl~el~~~~~~   71 (294)
T 2yv1_A           10 LDENTKAIVQGITGRQGSFHTKKMLECG--TK-IVGGVTPGKG------GQ--N-------VHGVPVFDTVKEAVKETDA   71 (294)
T ss_dssp             SCTTCCEEEETTTSHHHHHHHHHHHHTT--CC-EEEEECTTCT------TC--E-------ETTEEEESSHHHHHHHHCC
T ss_pred             hCCCCEEEEECCCCCHHHHHHHHHHhCC--Ce-EEEEeCCCCC------Cc--e-------ECCEeeeCCHHHHhhcCCC
Confidence            334567999998 999999999999988  77 4555554311      00  0       014667788988877  89


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCe-EEEeccCCCcchhhhHHHHHHH
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLP-FISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~i-vV~~snGi~~~t~~~l~e~l~~  250 (458)
                      |++++++|...+.++++++.+.   |.. +|.++.|+..+..+.+.+..++
T Consensus        72 Dv~ii~vp~~~~~~~v~ea~~~---Gi~~vVi~t~G~~~~~~~~l~~~A~~  119 (294)
T 2yv1_A           72 NASVIFVPAPFAKDAVFEAIDA---GIELIVVITEHIPVHDTMEFVNYAED  119 (294)
T ss_dssp             CEEEECCCHHHHHHHHHHHHHT---TCSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred             CEEEEccCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence            9999999999998888887653   333 5667878876443445555444

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.40  E-value=0.0005  Score=65.77  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=52.1

Q ss_pred             hhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          122 DILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       122 ~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +.|  ||||.|.|+|.+|..++..|.++|  ++|++++|+++..+.+...+..... .+  +       ++++  +.++|
T Consensus         2 ~~m--~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~D--~-------~d~~--~~~~d   65 (286)
T 3ius_A            2 NAM--TGTLLSFGHGYTARVLSRALAPQG--WRIIGTSRNPDQMEAIRASGAEPLL-WP--G-------EEPS--LDGVT   65 (286)
T ss_dssp             -----CCEEEEETCCHHHHHHHHHHGGGT--CEEEEEESCGGGHHHHHHTTEEEEE-SS--S-------SCCC--CTTCC
T ss_pred             CCC--cCcEEEECCcHHHHHHHHHHHHCC--CEEEEEEcChhhhhhHhhCCCeEEE-ec--c-------cccc--cCCCC
Confidence            345  689999999999999999999999  9999999999877776654422110 00  0       1222  67899


Q ss_pred             EEEEcCcc
Q 012720          202 YCLHAMPV  209 (458)
Q Consensus       202 iVilaVp~  209 (458)
                      +||.+...
T Consensus        66 ~vi~~a~~   73 (286)
T 3ius_A           66 HLLISTAP   73 (286)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99998863

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.38  E-value=0.0006  Score=70.48  Aligned_cols=95  Identities=13%  Similarity=0.142  Sum_probs=65.0

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhc--------CCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANK--------KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA  193 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~a--------G~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~  193 (458)
                      .||+.+||+|||+|.||..++..|.++        |.+.+|. +++|+.++.+.+..               ...+++|.
T Consensus         6 ~MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~---------------~~~~~~d~   70 (444)
T 3mtj_A            6 QGMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG---------------GLPLTTNP   70 (444)
T ss_dssp             CSCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT---------------TCCEESCT
T ss_pred             hhhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc---------------cCcccCCH
Confidence            366667999999999999999877642        3225554 67898876655421               12356788


Q ss_pred             HhhcC--CCCEEEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          194 KTALL--GADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       194 ~ea~~--~aDiVilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      ++.+.  +.|+|++|+|. ....+.+..   .++.|..|++.-++
T Consensus        71 ~ell~d~diDvVve~tp~~~~h~~~~~~---AL~aGKhVvtenka  112 (444)
T 3mtj_A           71 FDVVDDPEIDIVVELIGGLEPARELVMQ---AIANGKHVVTANKH  112 (444)
T ss_dssp             HHHHTCTTCCEEEECCCSSTTHHHHHHH---HHHTTCEEEECCHH
T ss_pred             HHHhcCCCCCEEEEcCCCchHHHHHHHH---HHHcCCEEEECCcc
Confidence            88775  57999999996 555555433   33457778766553

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.36  E-value=0.0004  Score=68.97  Aligned_cols=88  Identities=19%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             CCCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC---CC
Q 012720          126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL---GA  200 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~-~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~---~a  200 (458)
                      +++||+|||+|.||. ..+..|.+.. +.+|. ++++++++                    .++...+|.++++.   +.
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~-~~~lvav~d~~~~~--------------------~g~~~~~~~~~ll~~~~~v   82 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNA-NFKLVATASRHGTV--------------------EGVNSYTTIEAMLDAEPSI   82 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCT-TEEEEEEECSSCCC--------------------TTSEEESSHHHHHHHCTTC
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCC-CeEEEEEEeCChhh--------------------cCCCccCCHHHHHhCCCCC
Confidence            457999999999998 6888887753 26665 67787531                    12456778988765   48


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      |+|++|+|.....+++.....   .|..|+ +-|-+..
T Consensus        83 D~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKP~a~  116 (330)
T 4ew6_A           83 DAVSLCMPPQYRYEAAYKALV---AGKHVF-LEKPPGA  116 (330)
T ss_dssp             CEEEECSCHHHHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred             CEEEEeCCcHHHHHHHHHHHH---cCCcEE-EeCCCCC
Confidence            999999998776666655443   465554 6665543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.35  E-value=0.00023  Score=71.61  Aligned_cols=96  Identities=19%  Similarity=0.232  Sum_probs=66.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiVi  204 (458)
                      .++|.|+|+|.+|..++..+...|  .+|++++|++++++.+.+.+....         ....  ..+..+.+.++|+||
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~DvVI  235 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSRV---------ELLYSNSAEIETAVAEADLLI  235 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGGS---------EEEECCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCcee---------EeeeCCHHHHHHHHcCCCEEE
Confidence            379999999999999999999999  899999999998888876542100         0000  013445567899999


Q ss_pred             EcCccccH--HH-HHHhhhhcCCCCCeEEEec
Q 012720          205 HAMPVQFS--SS-FLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       205 laVp~~~v--~~-vl~~i~~~l~~~~ivV~~s  233 (458)
                      -|++....  .. +.+...+.++++..|+++.
T Consensus       236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            99975320  00 0122345567888888875

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.35  E-value=0.00036  Score=68.73  Aligned_cols=94  Identities=16%  Similarity=0.096  Sum_probs=65.6

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------  197 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------  197 (458)
                      .|+||+|||+ |.||...+..|.+.+  .+|. ++|++++.. .+.+.      .      ..+.+.++.++.+      
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~--~~lvav~d~~~~~~-~~~~~------~------~~~~~~~~~~~ll~~~~~l   66 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEVG--GVLVASLDPATNVG-LVDSF------F------PEAEFFTEPEAFEAYLEDL   66 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHTT--CEEEEEECSSCCCG-GGGGT------C------TTCEEESCHHHHHHHHHHH
T ss_pred             CceEEEEECCChHHHHHHHHHHHhCC--CEEEEEEcCCHHHH-HHHhh------C------CCCceeCCHHHHHHHhhhh
Confidence            3689999999 789999999999877  6654 778887642 12111      0      1356677888766      


Q ss_pred             ----CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          198 ----LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       198 ----~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                          .+.|+|++|+|.....+++...+.   .|..|+ +-|-+..
T Consensus        67 ~~~~~~vD~V~I~tP~~~H~~~~~~al~---aGkhVl-~EKPla~  107 (312)
T 3o9z_A           67 RDRGEGVDYLSIASPNHLHYPQIRMALR---LGANAL-SEKPLVL  107 (312)
T ss_dssp             HHTTCCCSEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred             cccCCCCcEEEECCCchhhHHHHHHHHH---CCCeEE-EECCCCC
Confidence                578999999999887776655444   355554 6665544

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.32  E-value=0.00023  Score=73.93  Aligned_cols=80  Identities=15%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++|.|+|+|.+|.+++..|++.|  ++|++++|+.++++.+.+........     ...+.-.++.+++++++|+||.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G--~~V~v~~R~~~~a~~la~~~~~~~~~-----~~Dv~d~~~l~~~l~~~DvVIn   74 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTLESAKKLSAGVQHSTPI-----SLDVNDDAALDAEVAKHDLVIS   74 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESSHHHHHHTTTTCTTEEEE-----ECCTTCHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCc--CEEEEEECCHHHHHHHHHhcCCceEE-----EeecCCHHHHHHHHcCCcEEEE
Confidence            4578999999999999999999988  89999999998877665421000000     0000000133456789999999


Q ss_pred             cCccccH
Q 012720          206 AMPVQFS  212 (458)
Q Consensus       206 aVp~~~v  212 (458)
                      |+|....
T Consensus        75 ~a~~~~~   81 (450)
T 1ff9_A           75 LIPYTFH   81 (450)
T ss_dssp             CCC--CH
T ss_pred             CCccccc
Confidence            9996543

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.32  E-value=0.00057  Score=69.01  Aligned_cols=120  Identities=12%  Similarity=0.132  Sum_probs=67.0

Q ss_pred             ccchhhccc--cchhhcCCCeEEEEC-cchHHHHHHHHHHhcCC-C--CeEEEEeCCH----HHHHHHHh--hcCCCccC
Q 012720          111 WSRTWRSKA--KTDILERTNKVVVLG-GGSFGTAMAAHVANKKS-Q--LKVYMLMRDP----AVCQSINE--KHCNCRYF  178 (458)
Q Consensus       111 ~~~~~~~~~--~~~~~~~~~kI~IIG-aG~mG~~iA~~La~aG~-~--~~V~v~~r~~----~~~e~l~~--~g~~~~~~  178 (458)
                      |+..|....  ..+.|...+||+|+| +|.+|.++|..|+..+. +  ..|.+.+.+.    ++++-..-  .+..    
T Consensus        14 ~~~~~~~~~e~~~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~----   89 (375)
T 7mdh_A           14 FCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL----   89 (375)
T ss_dssp             GCC------------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT----
T ss_pred             EEEEeechhhhhHhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhh----
Confidence            444555332  455676678999999 79999999999998763 1  1366655432    22221111  1111    


Q ss_pred             CCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-----c-----------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          179 PEQKLPENVIATTDAKTALLGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       179 ~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-----~-----------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                        ..+..++...++..++++++|+||++--.     .           -++++...|.++..++.+++.++|-+
T Consensus        90 --~p~~~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPv  161 (375)
T 7mdh_A           90 --YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPC  161 (375)
T ss_dssp             --CTTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             --hhhcCCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch
Confidence              01112456666767789999999996431     1           12333344555556778888888754

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.32  E-value=0.00031  Score=68.44  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~aDiV  203 (458)
                      .+++.|+|+|.+|.+++..|++.|  . +|++++|+.++++++.+.-.. .+ ++    ..+...+  ++++.+.++|+|
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G--~~~v~i~~R~~~~a~~la~~~~~-~~-~~----~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHG--VQKLQVADLDTSRAQALADVINN-AV-GR----EAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSSHHHHHHHHHHHHH-HH-TS----CCEEEECSTTHHHHHHHSSEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHh-hc-CC----ceEEEcCHHHHHHHHhcCCEE
Confidence            568999999999999999999998  6 799999999988777543100 00 00    1233333  677777899999


Q ss_pred             EEcCccccHHHHHHhh-hhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLEGI-SDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i-~~~l~~~~ivV~~s  233 (458)
                      |-|+|..-....-..+ ...++++.+|+++.
T Consensus       199 InaTp~Gm~~~~~~pi~~~~l~~~~~v~Dlv  229 (283)
T 3jyo_A          199 VNATPMGMPAHPGTAFDVSCLTKDHWVGDVV  229 (283)
T ss_dssp             EECSSTTSTTSCSCSSCGGGCCTTCEEEECC
T ss_pred             EECCCCCCCCCCCCCCCHHHhCCCCEEEEec
Confidence            9999952111000001 34567788888876

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.32  E-value=0.0004  Score=68.60  Aligned_cols=94  Identities=14%  Similarity=0.075  Sum_probs=64.7

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------  197 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------  197 (458)
                      +|+||+|||+ |.||...+..|.+.+  .++. ++|++++.. .+.+.           + ..+.+.+|.++.+      
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~--~~lvav~d~~~~~~-~~~~~-----------~-~~~~~~~~~~~ll~~~~~l   66 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDTG--NCLVSAYDINDSVG-IIDSI-----------S-PQSEFFTEFEFFLDHASNL   66 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHTT--CEEEEEECSSCCCG-GGGGT-----------C-TTCEEESSHHHHHHHHHHH
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhCC--CEEEEEEcCCHHHH-HHHhh-----------C-CCCcEECCHHHHHHhhhhh
Confidence            3689999999 789999999999876  6654 778887542 12111           0 1356677888765      


Q ss_pred             -----CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          198 -----LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       198 -----~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                           .+.|+|++|+|.....++......   .|..|+ +-|-+..
T Consensus        67 ~~~~~~~vD~V~I~tP~~~H~~~~~~al~---aGkhVl-~EKPla~  108 (318)
T 3oa2_A           67 KRDSATALDYVSICSPNYLHYPHIAAGLR---LGCDVI-CEKPLVP  108 (318)
T ss_dssp             TTSTTTSCCEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSCCS
T ss_pred             hhccCCCCcEEEECCCcHHHHHHHHHHHH---CCCeEE-EECCCcC
Confidence                 578999999999877776655444   355543 5665543

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.31  E-value=0.0021  Score=62.98  Aligned_cols=104  Identities=17%  Similarity=0.196  Sum_probs=72.1

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C-CC
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G-AD  201 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~-aD  201 (458)
                      ...+|.|+|+ |.||..++..|.+.|  ++ .++..++...      +.  .       ..++.+..+++++.+  . +|
T Consensus        12 ~~~~vvV~Gasg~~G~~~~~~l~~~g--~~-~v~~VnP~~~------g~--~-------i~G~~vy~sl~el~~~~~~~D   73 (297)
T 2yv2_A           12 SETRVLVQGITGREGSFHAKAMLEYG--TK-VVAGVTPGKG------GS--E-------VHGVPVYDSVKEALAEHPEIN   73 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT--CE-EEEEECTTCT------TC--E-------ETTEEEESSHHHHHHHCTTCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhCC--Cc-EEEEeCCCCC------Cc--e-------ECCEeeeCCHHHHhhcCCCCC
Confidence            3567888898 999999999999888  77 4444444210      00  0       014667788888765  5 99


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCe-EEEeccCCCcchhhhHHHHHHH
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLP-FISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~i-vV~~snGi~~~t~~~l~e~l~~  250 (458)
                      ++++++|...+.++++++.+.   |.. +|.++.|+..+..+.+.+..++
T Consensus        74 vaIi~vp~~~~~~~v~ea~~~---Gi~~vVi~t~G~~~~~~~~l~~~A~~  120 (297)
T 2yv2_A           74 TSIVFVPAPFAPDAVYEAVDA---GIRLVVVITEGIPVHDTMRFVNYARQ  120 (297)
T ss_dssp             EEEECCCGGGHHHHHHHHHHT---TCSEEEECCCCCCHHHHHHHHHHHHH
T ss_pred             EEEEecCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence            999999999999998887653   333 5667878875444445555544

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.28  E-value=0.00038  Score=69.70  Aligned_cols=101  Identities=15%  Similarity=0.164  Sum_probs=60.4

Q ss_pred             hcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       124 ~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |+.++||+|+| .|.+|..+.+.|.++. ..++..+.+....-..+.+..  .. +.+.   ..+.. .+.++ +.++|+
T Consensus         1 M~~~~kV~IiGAtG~iG~~llr~L~~~p-~~elv~v~s~~~~g~~~~~~~--~~-~~g~---~~~~~-~~~~~-~~~vDv   71 (345)
T 2ozp_A            1 MTGKKTLSIVGASGYAGGEFLRLALSHP-YLEVKQVTSRRFAGEPVHFVH--PN-LRGR---TNLKF-VPPEK-LEPADI   71 (345)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHTCT-TEEEEEEBCSTTTTSBGGGTC--GG-GTTT---CCCBC-BCGGG-CCCCSE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHcCC-CcEEEEEECchhhCchhHHhC--ch-hcCc---ccccc-cchhH-hcCCCE
Confidence            45568999999 5999999999998765 257776655432211111100  00 1110   01111 13333 578999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ||+|+|.....+.+..+.   ..|..||+++.-.
T Consensus        72 V~~a~g~~~s~~~a~~~~---~aG~~VId~Sa~~  102 (345)
T 2ozp_A           72 LVLALPHGVFAREFDRYS---ALAPVLVDLSADF  102 (345)
T ss_dssp             EEECCCTTHHHHTHHHHH---TTCSEEEECSSTT
T ss_pred             EEEcCCcHHHHHHHHHHH---HCCCEEEEcCccc
Confidence            999999887766665543   4578899988533

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.27  E-value=0.00037  Score=69.43  Aligned_cols=104  Identities=17%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHh-hcCCC-ccCCCCC--C-CCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINE-KHCNC-RYFPEQK--L-PENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~-~g~~~-~~~~~~~--l-~~~i~a~~~~~ea~~~a  200 (458)
                      |+||+|+|+|.||..+++.|.+.. +.+|. +.+++++.+..+.+ .|... ..+++..  + ...+.+..++++.+.++
T Consensus         2 ~irVgIiG~G~iG~~~~r~l~~~~-~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v   80 (334)
T 2czc_A            2 KVKVGVNGYGTIGKRVAYAVTKQD-DMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             CcEEEEEeEhHHHHHHHHHHhcCC-CCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCC
Confidence            469999999999999999998764 25664 56777665555443 22110 0000000  0 00123445788877899


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      |+|++|+|.....+......   +.|..|+ +++.
T Consensus        81 DvV~~aTp~~~h~~~a~~~l---~aGk~Vi-~sap  111 (334)
T 2czc_A           81 DIIVDATPGGIGAKNKPLYE---KAGVKAI-FQGG  111 (334)
T ss_dssp             SEEEECCSTTHHHHHHHHHH---HHTCEEE-ECTT
T ss_pred             CEEEECCCccccHHHHHHHH---HcCCceE-eecc
Confidence            99999999876555444332   2355555 4433

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.25  E-value=0.00022  Score=65.78  Aligned_cols=76  Identities=11%  Similarity=0.119  Sum_probs=51.3

Q ss_pred             CCe-EEEECc-chHHHHHHHHHH-hcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNK-VVVLGG-GSFGTAMAAHVA-NKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~k-I~IIGa-G~mG~~iA~~La-~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ||| |.|.|+ |.+|..++..|+ +.|  ++|++++|+++ +++.+...+.......     ..+.-.++++++++++|+
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~D~~d~~~~~~~~~~~d~   76 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTD--MHITLYGRQLKTRIPPEIIDHERVTVIE-----GSFQNPGXLEQAVTNAEV   76 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCC--CEEEEEESSHHHHSCHHHHTSTTEEEEE-----CCTTCHHHHHHHHTTCSE
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCC--ceEEEEecCccccchhhccCCCceEEEE-----CCCCCHHHHHHHHcCCCE
Confidence            345 999995 999999999999 888  99999999988 7666642221111100     000001133456788999


Q ss_pred             EEEcCcc
Q 012720          203 CLHAMPV  209 (458)
Q Consensus       203 VilaVp~  209 (458)
                      ||.+...
T Consensus        77 vv~~ag~   83 (221)
T 3r6d_A           77 VFVGAME   83 (221)
T ss_dssp             EEESCCC
T ss_pred             EEEcCCC
Confidence            9998874

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.24  E-value=0.0019  Score=64.53  Aligned_cols=104  Identities=19%  Similarity=0.287  Sum_probs=68.1

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCC-----CCeEEEEeCCHH--HHHHHHh--hcCCCccCCCCCCCCceEEeCCHHhhc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDPA--VCQSINE--KHCNCRYFPEQKLPENVIATTDAKTAL  197 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~-----~~~V~v~~r~~~--~~e~l~~--~g~~~~~~~~~~l~~~i~a~~~~~ea~  197 (458)
                      .||+|+|+ |.+|..++.+|+....     ..++.++|..+.  .++-+.-  .+..      ..+...+...++..+++
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~------~~~~~~~~~~~~~~~a~   98 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCA------FPLLDKVVVTADPRVAF   98 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTT------CTTEEEEEEESCHHHHT
T ss_pred             CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcC------ccCCCcEEEcCChHHHh
Confidence            59999996 9999999999997641     127999998763  2221111  1111      11223466778888899


Q ss_pred             CCCCEEEEcCcc-----c-----------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          198 LGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       198 ~~aDiVilaVp~-----~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +++|+||++--.     .           -++++.+.|.++..++.+|+.++|-++
T Consensus        99 ~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd  154 (345)
T 4h7p_A           99 DGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPAN  154 (345)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcc
Confidence            999999996531     1           134444556666667887777887543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.21  E-value=0.00057  Score=65.20  Aligned_cols=84  Identities=17%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-------------------HHHHHHHhhc--CCCccCCCCCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------------------AVCQSINEKH--CNCRYFPEQKLPE  185 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-------------------~~~e~l~~~g--~~~~~~~~~~l~~  185 (458)
                      .++|.|||+|.+|+.+|..|++.|. .+++++|++.                   .+++.+.+.-  .+    +..    
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~~----  101 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN----PHI----  101 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC----TTS----
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC----CCc----
Confidence            4799999999999999999999993 3899999987                   4555543321  11    110    


Q ss_pred             ceEEe------CCHHhhcCCCCEEEEcCccccHHHHHHhh
Q 012720          186 NVIAT------TDAKTALLGADYCLHAMPVQFSSSFLEGI  219 (458)
Q Consensus       186 ~i~a~------~~~~ea~~~aDiVilaVp~~~v~~vl~~i  219 (458)
                      .+...      .+.++.++++|+||.|+........+...
T Consensus       102 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~  141 (249)
T 1jw9_B          102 AITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAG  141 (249)
T ss_dssp             EEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred             EEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence            01111      12334567888888888766555555443

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.20  E-value=0.00068  Score=65.58  Aligned_cols=89  Identities=17%  Similarity=0.209  Sum_probs=61.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||+|.||.+++..|++.|  . +|++++|+.++++.+.+.- .            .....+..  +.++|+||-
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G--~~~i~v~nRt~~ka~~la~~~-~------------~~~~~~~~--~~~~DivIn  181 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSG--FEKLKIYARNVKTGQYLAALY-G------------YAYINSLE--NQQADILVN  181 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTT--CCCEEEECSCHHHHHHHHHHH-T------------CEEESCCT--TCCCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHc-C------------Cccchhhh--cccCCEEEE
Confidence            468999999999999999999998  5 8999999999888886541 0            01111222  468999999


Q ss_pred             cCccccHH----HHHHhh-hhcCCCCCeEEEec
Q 012720          206 AMPVQFSS----SFLEGI-SDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~----~vl~~i-~~~l~~~~ivV~~s  233 (458)
                      |+|.....    +.. .+ ...++++.+++++.
T Consensus       182 aTp~gm~~~~~~~~~-~~~~~~l~~~~~v~Dlv  213 (271)
T 1npy_A          182 VTSIGMKGGKEEMDL-AFPKAFIDNASVAFDVV  213 (271)
T ss_dssp             CSSTTCTTSTTTTSC-SSCHHHHHHCSEEEECC
T ss_pred             CCCCCccCccccCCC-CCCHHHcCCCCEEEEee
Confidence            99964311    100 01 12233577888886

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.18  E-value=0.00058  Score=67.40  Aligned_cols=96  Identities=18%  Similarity=0.279  Sum_probs=61.0

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHH-HHHHHhh-cCCCccCCCCCCCCceEEeCCHHhhc---
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAV-CQSINEK-HCNCRYFPEQKLPENVIATTDAKTAL---  197 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~-~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea~---  197 (458)
                      |++++||+|||+|.||..++..|.++..+.++. ++++++++ ...+.+. |..             ...++.++++   
T Consensus         1 M~~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~-------------~~~~~~e~ll~~~   67 (312)
T 1nvm_B            1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVT-------------TTYAGVEGLIKLP   67 (312)
T ss_dssp             CCSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCC-------------EESSHHHHHHHSG
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCC-------------cccCCHHHHHhcc
Confidence            445679999999999999999996622125544 67888665 4444332 211             1223555543   


Q ss_pred             --CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          198 --LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       198 --~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                        .+.|+||+|+|.....+........ ++|..|++..
T Consensus        68 ~~~~iDvV~~atp~~~h~~~a~~al~a-~~Gk~Vi~ek  104 (312)
T 1nvm_B           68 EFADIDFVFDATSASAHVQNEALLRQA-KPGIRLIDLT  104 (312)
T ss_dssp             GGGGEEEEEECSCHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             CCCCCcEEEECCChHHHHHHHHHHHHh-CCCCEEEEcC
Confidence              4589999999977666665554432 2377777644

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.18  E-value=0.0014  Score=60.21  Aligned_cols=71  Identities=24%  Similarity=0.313  Sum_probs=50.5

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||.|.|+ |.+|..++..|++.|  ++|++++|+++..+.+...+.... ..+..-+       +. +++.++|+||.+
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~-~~D~~d~-------~~-~~~~~~d~vi~~   69 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDPQKAADRLGATVATL-VKEPLVL-------TE-ADLDSVDAVVDA   69 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHTCTTSEEE-ECCGGGC-------CH-HHHTTCSEEEEC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEecccccccccCCCceEE-ecccccc-------cH-hhcccCCEEEEC
Confidence            68999997 999999999999999  999999999987766543322100 0000000       11 457889999998


Q ss_pred             Ccc
Q 012720          207 MPV  209 (458)
Q Consensus       207 Vp~  209 (458)
                      ...
T Consensus        70 ag~   72 (224)
T 3h2s_A           70 LSV   72 (224)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            754

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.17  E-value=0.00083  Score=67.69  Aligned_cols=88  Identities=10%  Similarity=0.013  Sum_probs=60.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVil  205 (458)
                      .++|+|+|+|+||..+|..|.+.|  ++|+++|++.+.++++.+.. .            .... +.++.+. +||+++.
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~G--akVvv~D~~~~~l~~~a~~~-g------------a~~v-~~~~ll~~~~DIvip  236 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTEG--AKLVVTDVNKAAVSAAVAEE-G------------ADAV-APNAIYGVTCDIFAP  236 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHH-C------------CEEC-CGGGTTTCCCSEEEE
T ss_pred             cCEEEEECchHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHc-C------------CEEE-ChHHHhccCCcEeec
Confidence            579999999999999999999999  89999999998887766541 1            1222 3344444 8999998


Q ss_pred             cCccccH-HHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQFS-SSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~v-~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      |.....+ .+.++.    + ...+|+..+|+
T Consensus       237 ~a~~~~I~~~~~~~----l-g~~iV~e~An~  262 (364)
T 1leh_A          237 CALGAVLNDFTIPQ----L-KAKVIAGSADN  262 (364)
T ss_dssp             CSCSCCBSTTHHHH----C-CCSEECCSCSC
T ss_pred             cchHHHhCHHHHHh----C-CCcEEEeCCCC
Confidence            8643322 222222    3 23455556654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.16  E-value=0.001  Score=61.91  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .|||.|.|+ |.+|..++..|++.|  ++|++++|+++..+.+...+. .. +..+.      .  ++..++++++|+||
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~-~~~Dl------~--~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNEEQGPELRERGASDI-VVANL------E--EDFSHAFASIDAVV   89 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHTTCSEE-EECCT------T--SCCGGGGTTCSEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECChHHHHHHHhCCCceE-EEccc------H--HHHHHHHcCCCEEE
Confidence            689999997 999999999999999  999999999988877765433 11 11111      1  35566778999999


Q ss_pred             EcCcc
Q 012720          205 HAMPV  209 (458)
Q Consensus       205 laVp~  209 (458)
                      .+...
T Consensus        90 ~~ag~   94 (236)
T 3e8x_A           90 FAAGS   94 (236)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            98763

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.16  E-value=0.0027  Score=60.44  Aligned_cols=103  Identities=20%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             CeEEEECc-chHHHHHHHHHHhc-CCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYC  203 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiV  203 (458)
                      |||+|+|+ |.||..++..+.+. +  ++|.. +++..                             ++++++ .++|+|
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~--~elva~~d~~~-----------------------------dl~~~~~~~~Dvv   49 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADD--LTLSAELDAGD-----------------------------PLSLLTDGNTEVV   49 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTT--CEEEEEECTTC-----------------------------CTHHHHHTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--CEEEEEEccCC-----------------------------CHHHHhccCCcEE
Confidence            68999997 99999999998865 5  88874 45431                             334433 378999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~  269 (458)
                      |-++....+.+.+.....   .+..+|..+.|+..+....+.+..++. .    ...++..|++.-
T Consensus        50 IDfT~p~a~~~~~~~a~~---~g~~~VigTTG~~~e~~~~l~~aa~~~-~----~~~vv~a~N~si  107 (245)
T 1p9l_A           50 IDFTHPDVVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAK-P----NTSVLIAPNFAI  107 (245)
T ss_dssp             EECSCTTTHHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHTS-T----TCEEEECSCCCH
T ss_pred             EEccChHHHHHHHHHHHH---cCCCEEEcCCCCCHHHHHHHHHHHHhC-C----CCCEEEECCccH
Confidence            977777777666655444   366666666687765332222222211 0    235677777654

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=97.10  E-value=0.0023  Score=63.71  Aligned_cols=105  Identities=16%  Similarity=0.130  Sum_probs=64.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeC--CHHHHHHHHhhcC-CCccCCCC-----CCC---CceEEe--CC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMR--DPAVCQSINEKHC-NCRYFPEQ-----KLP---ENVIAT--TD  192 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r--~~~~~e~l~~~g~-~~~~~~~~-----~l~---~~i~a~--~~  192 (458)
                      |+||+|+|+|++|..+++.|.++. +.+|.. .++  +.+.+..+.+... ..++....     .+.   ..+.+.  .|
T Consensus         3 ~ikVgI~G~G~iGr~~~R~l~~~~-~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d   81 (335)
T 1u8f_O            3 KVKVGVNGFGRIGRLVTRAAFNSG-KVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD   81 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC-SSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             ceEEEEEccCHHHHHHHHHHHcCC-CcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCC
Confidence            469999999999999999998764 367664 454  6666655554211 11111000     011   122333  36


Q ss_pred             HHhhc---CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          193 AKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       193 ~~ea~---~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +++.-   .++|+||.|+|.....+....   +++.|..+|.++..
T Consensus        82 ~~~l~~~~~~vDvV~eatg~~~~~e~a~~---~l~aGak~V~iSap  124 (335)
T 1u8f_O           82 PSKIKWGDAGAEYVVESTGVFTTMEKAGA---HLQGGAKRVIISAP  124 (335)
T ss_dssp             GGGCCTTTTTCCEEEECSSSCCSHHHHGG---GGGGTCSEEEESSC
T ss_pred             HHHCccccCCCCEEEECCCchhhHHHHHH---HHhCCCeEEEeccC
Confidence            66641   479999999998877665544   44557667777743

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.10  E-value=0.00074  Score=65.68  Aligned_cols=89  Identities=20%  Similarity=0.257  Sum_probs=62.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|+|+|.+|.+++..|.+.|  . +|++++|+.++++.+.+.-             .....+++.+ + ++|+||-
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G--~~~v~v~nRt~~ka~~La~~~-------------~~~~~~~l~~-l-~~DivIn  184 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNF--AKDIYVVTRNPEKTSEIYGEF-------------KVISYDELSN-L-KGDVIIN  184 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTT--CSEEEEEESCHHHHHHHCTTS-------------EEEEHHHHTT-C-CCSEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHhc-------------CcccHHHHHh-c-cCCEEEE
Confidence            578999999999999999999998  6 8999999999888876521             0112234444 5 8999999


Q ss_pred             cCccccH---HHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFS---SSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v---~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+|..-.   .... --...++++.+|+++.
T Consensus       185 aTp~Gm~~~~~~~p-i~~~~l~~~~~v~Dlv  214 (282)
T 3fbt_A          185 CTPKGMYPKEGESP-VDKEVVAKFSSAVDLI  214 (282)
T ss_dssp             CSSTTSTTSTTCCS-SCHHHHTTCSEEEESC
T ss_pred             CCccCccCCCccCC-CCHHHcCCCCEEEEEe
Confidence            9986211   1000 0122345678888875

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=97.10  E-value=0.0011  Score=70.68  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.+|..|+.+|. -+++++|.+.
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGV-G~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCC
Confidence            5799999999999999999999995 4799999864

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.08  E-value=0.00095  Score=66.70  Aligned_cols=101  Identities=14%  Similarity=0.182  Sum_probs=61.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCCccCC-CCC--C-CCceEEeCCHHhhcCCCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNCRYFP-EQK--L-PENVIATTDAKTALLGAD  201 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~-g~~~~~~~-~~~--l-~~~i~a~~~~~ea~~~aD  201 (458)
                      +||+|+|+|.||..+++.|.++. +.+|. +.+++.+....+... +.. .+.+ ...  + ..++....+.++...++|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p-~~elvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~~~~v~v~~~~e~l~~~vD   79 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQP-DMKLVGVAKTSPNYEAFIAHRRGIR-IYVPQQSIKKFEESGIPVAGTVEDLIKTSD   79 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSSCSHHHHHHHHTTCC-EECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CCEEEEEEcCChHHHHHHHHhcCcc-eecCcCHHHHhcccccccccCHhHhhcCCC
Confidence            58999999999999999998764 25665 556765544433332 221 1100 000  0 112333446666556899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +||.|+|.....+......+   .|..+|+.+
T Consensus        80 vV~~aTp~~~s~~~a~~~~~---aG~kvV~~s  108 (340)
T 1b7g_O           80 IVVDTTPNGVGAQYKPIYLQ---LQRNAIFQG  108 (340)
T ss_dssp             EEEECCSTTHHHHHHHHHHH---TTCEEEECT
T ss_pred             EEEECCCCchhHHHHHHHHH---cCCeEEEeC
Confidence            99999998776665544333   355566654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.07  E-value=0.0034  Score=58.85  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=55.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|.|||+|.+|..-+..|.++|  .+|++++++. +.++.+.+.+. .....+        . -..+ -+.++|+||.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~~~l~~l~~~~~-i~~i~~--------~-~~~~-dL~~adLVIa   97 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVSAEINEWEAKGQ-LRVKRK--------K-VGEE-DLLNVFFIVV   97 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCCHHHHHHHHTTS-CEEECS--------C-CCGG-GSSSCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCCHHHHHHHHcCC-cEEEEC--------C-CCHh-HhCCCCEEEE
Confidence            579999999999999999999999  9999998764 23455554431 111000        0 0223 3688999999


Q ss_pred             cCccccHHHHHHhh
Q 012720          206 AMPVQFSSSFLEGI  219 (458)
Q Consensus       206 aVp~~~v~~vl~~i  219 (458)
                      |+....+...+...
T Consensus        98 AT~d~~~N~~I~~~  111 (223)
T 3dfz_A           98 ATNDQAVNKFVKQH  111 (223)
T ss_dssp             CCCCTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            98877665555443

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=97.03  E-value=0.00038  Score=69.10  Aligned_cols=93  Identities=9%  Similarity=0.055  Sum_probs=62.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCH-HHHHHHHhh----cCCCccCCCCCCCCceEEeCCHHhhcC--
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDP-AVCQSINEK----HCNCRYFPEQKLPENVIATTDAKTALL--  198 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~-~~~e~l~~~----g~~~~~~~~~~l~~~i~a~~~~~ea~~--  198 (458)
                      ++||+|||+|.+|...+..| ..+  .+|. ++|+++ +.++.+.+.    +.            +..+++|.++++.  
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l-~~~--~~lvav~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ll~~~   66 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL-DEE--CSITGIAPGVPEEDLSKLEKAISEMNI------------KPKKYNNWWEMLEKE   66 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC-CTT--EEEEEEECSSTTCCCHHHHHHHHTTTC------------CCEECSSHHHHHHHH
T ss_pred             ceEEEEEccchhHHHHHHhc-CCC--cEEEEEecCCchhhHHHHHHHHHHcCC------------CCcccCCHHHHhcCC
Confidence            57999999999888777777 444  7776 678876 333333321    21            1346678988775  


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +.|+|++|+|.....+++.....   .|..|+ +-|-+..
T Consensus        67 ~vD~V~I~tp~~~H~~~~~~al~---aGkhVl-~EKPla~  102 (337)
T 3ip3_A           67 KPDILVINTVFSLNGKILLEALE---RKIHAF-VEKPIAT  102 (337)
T ss_dssp             CCSEEEECSSHHHHHHHHHHHHH---TTCEEE-ECSSSCS
T ss_pred             CCCEEEEeCCcchHHHHHHHHHH---CCCcEE-EeCCCCC
Confidence            58999999998776666555443   355543 6666654

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.01  E-value=0.001  Score=66.36  Aligned_cols=100  Identities=15%  Similarity=0.206  Sum_probs=62.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH---HHHHHHHhhcCCCccCCCCCCCCceEEeC--CHHhhcCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP---AVCQSINEKHCNCRYFPEQKLPENVIATT--DAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~---~~~e~l~~~g~~~~~~~~~~l~~~i~a~~--~~~ea~~~a  200 (458)
                      |+||+|+|+ |.+|..+...|.++. ++++..+..++   ..-+.+.+..  +. +.+.   ..+.+.+  +.++...++
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p-~~el~~l~s~~~~~saGk~~~~~~--p~-~~~~---~~~~v~~~~~~~~~~~~~   76 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHP-HMNITALTVSAQSNDAGKLISDLH--PQ-LKGI---VELPLQPMSDISEFSPGV   76 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCT-TEEEEEEEEETTCTTTTSBHHHHC--GG-GTTT---CCCBEEEESSGGGTCTTC
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCC-CCcEEEEEecCchhhcCCchHHhC--cc-ccCc---cceeEeccCCHHHHhcCC
Confidence            579999995 999999999999854 36777654332   1111121110  00 1110   0112222  445544899


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |+||+|+|.....+....+.+   .|..||+++.-.
T Consensus        77 Dvvf~a~p~~~s~~~~~~~~~---~g~~vIDlSa~f  109 (337)
T 3dr3_A           77 DVVFLATAHEVSHDLAPQFLE---AGCVVFDLSGAF  109 (337)
T ss_dssp             SEEEECSCHHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred             CEEEECCChHHHHHHHHHHHH---CCCEEEEcCCcc
Confidence            999999998877777666543   588999998543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.01  E-value=0.00065  Score=65.58  Aligned_cols=73  Identities=16%  Similarity=0.220  Sum_probs=58.5

Q ss_pred             CCCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      ..+++.|||.|. +|..+|..|.+.|  ..|+++++..                            .++++.+++||+||
T Consensus       149 ~Gk~vvVvG~s~iVG~plA~lL~~~g--AtVtv~~~~t----------------------------~~L~~~~~~ADIVI  198 (276)
T 3ngx_A          149 HENTVTIVNRSPVVGRPLSMMLLNRN--YTVSVCHSKT----------------------------KDIGSMTRSSKIVV  198 (276)
T ss_dssp             CSCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHHHSSEEE
T ss_pred             CCCEEEEEcCChHHHHHHHHHHHHCC--CeEEEEeCCc----------------------------ccHHHhhccCCEEE
Confidence            368999999985 8999999999998  8999987632                            26777889999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .+++...+   +  -..++++|++||++.
T Consensus       199 ~Avg~p~~---I--~~~~vk~GavVIDvg  222 (276)
T 3ngx_A          199 VAVGRPGF---L--NREMVTPGSVVIDVG  222 (276)
T ss_dssp             ECSSCTTC---B--CGGGCCTTCEEEECC
T ss_pred             ECCCCCcc---c--cHhhccCCcEEEEec
Confidence            99986431   1  135678999999986

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.01  E-value=0.0032  Score=62.02  Aligned_cols=101  Identities=15%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHH----HHhhcCCCccCCCCCCCCceEEeCC-HHhhcCC
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQS----INEKHCNCRYFPEQKLPENVIATTD-AKTALLG  199 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r--~~~~~e~----l~~~g~~~~~~~~~~l~~~i~a~~~-~~ea~~~  199 (458)
                      |||+|+|+ |.+|..++..|+..|...++.++|+  ++++++.    +....   .+.+   .+..+...+| +.+++++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~---~~~~---~~~~i~~~~d~l~~al~g   74 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGTR---SDANIYVESDENLRIIDE   74 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTSC---CCCEEEEEETTCGGGGTT
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH---HhcC---CCeEEEeCCcchHHHhCC
Confidence            69999999 9999999999998773236889999  7654332    22210   0110   1112333332 5678999


Q ss_pred             CCEEEEcCcc-----c-----------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          200 ADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       200 aDiVilaVp~-----~-----------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|+||++.-.     .           .+.++++.+.++-  +..|+..+|-+
T Consensus        75 aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SNPv  125 (313)
T 1hye_A           75 SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITNPV  125 (313)
T ss_dssp             CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSSSH
T ss_pred             CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecCcH
Confidence            9999997631     1           1334445555554  56777777643

>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}

Probab=96.98  E-value=0.0013  Score=66.69  Aligned_cols=109  Identities=14%  Similarity=0.136  Sum_probs=72.3

Q ss_pred             CeEEEECcchHH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC----CCCceEEeCC----HHhhcC
Q 012720          128 NKVVVLGGGSFG-TAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK----LPENVIATTD----AKTALL  198 (458)
Q Consensus       128 ~kI~IIGaG~mG-~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~----l~~~i~a~~~----~~ea~~  198 (458)
                      ||+..+|+|++| ..++..|.++|  ++|++.|+++..++.|+++|.-....-+..    .-.++++..+    .-+++.
T Consensus         1 mkavhfGaGniGRGfig~~l~~~g--~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~   78 (382)
T 3h2z_A            1 MKALHFGAGNIGRGFIGKLLADAG--IQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIA   78 (382)
T ss_dssp             CEEEEECCSHHHHHTHHHHHHHTT--CEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHT
T ss_pred             CcEEEECCCccchhhHHHHHHHcC--CeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHc
Confidence            789999999999 56677778888  999999999999999998764222211111    1123444321    223567


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhc--------CCCCCeEEEeccCCCc
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDY--------VDPGLPFISLSKGLEL  238 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~--------l~~~~ivV~~snGi~~  238 (458)
                      ++|+|.+++.......+...|...        ..++-.|++|-|-...
T Consensus        79 ~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~pltilsCeN~~~n  126 (382)
T 3h2z_A           79 QVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNIIACENMVRG  126 (382)
T ss_dssp             TCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEEEECCSSTTH
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEEEECCCccch
Confidence            999999999976555544333221        2244568899885554

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.96  E-value=0.0003  Score=65.55  Aligned_cols=81  Identities=11%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVi  204 (458)
                      .+||+|||+|.+|..++..+.... ++++. ++|.++++.....         .+.    .+...+++++.++ +.|+|+
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i---------~gv----~V~~~~dl~ell~~~ID~Vi  145 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPV---------RGG----VIEHVDLLPQRVPGRIEIAL  145 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEE---------TTE----EEEEGGGHHHHSTTTCCEEE
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhh---------cCC----eeecHHhHHHHHHcCCCEEE
Confidence            468999999999999998633222 27765 6788876432111         010    1334567887765 589999


Q ss_pred             EcCccccHHHHHHhhhh
Q 012720          205 HAMPVQFSSSFLEGISD  221 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~  221 (458)
                      +|+|+....++...+..
T Consensus       146 IA~Ps~~~~ei~~~l~~  162 (211)
T 2dt5_A          146 LTVPREAAQKAADLLVA  162 (211)
T ss_dssp             ECSCHHHHHHHHHHHHH
T ss_pred             EeCCchhHHHHHHHHHH
Confidence            99998776677666543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.96  E-value=0.00082  Score=66.56  Aligned_cols=95  Identities=11%  Similarity=0.061  Sum_probs=61.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil  205 (458)
                      .++|.|+|+|.+|..++..|.+.|  + |++++++++.++ +++.+.... .++..-      .+.++++ ++++|.+++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g--~-v~vid~~~~~~~-~~~~~~~~i-~gd~~~------~~~L~~a~i~~a~~vi~  183 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVRKK-VLRSGANFV-HGDPTR------VSDLEKANVRGARAVIV  183 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSC--E-EEEESCGGGHHH-HHHTTCEEE-ESCTTS------HHHHHHTCSTTEEEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCC--c-EEEEeCChhhhh-HHhCCcEEE-EeCCCC------HHHHHhcChhhccEEEE
Confidence            468999999999999999999988  8 999999999988 766443211 011000      0122333 678999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +++++...-..-.....+.++..++.-
T Consensus       184 ~~~~d~~n~~~~~~ar~~~~~~~iiar  210 (336)
T 1lnq_A          184 DLESDSETIHCILGIRKIDESVRIIAE  210 (336)
T ss_dssp             CCSSHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             cCCccHHHHHHHHHHHHHCCCCeEEEE
Confidence            999764322222333444555444433

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.96  E-value=0.0012  Score=66.55  Aligned_cols=100  Identities=19%  Similarity=0.332  Sum_probs=59.6

Q ss_pred             hcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       124 ~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ||.++||+|+| .|.+|..+.+.|.++. ..++..+....+.-..+...+.  . +.+... ..+... + ++...++|+
T Consensus        13 ~M~~~kV~IiGAtG~iG~~llr~L~~~p-~~elvai~~~~~~g~~~~~~~~--~-~~~~v~-~dl~~~-~-~~~~~~vDv   85 (359)
T 1xyg_A           13 PEKDIRIGLLGASGYTGAEIVRLLANHP-HFQVTLMTADRKAGQSMESVFP--H-LRAQKL-PTLVSV-K-DADFSTVDA   85 (359)
T ss_dssp             --CCEEEEEECCSSHHHHHHHHHHHTCS-SEEEEEEBCSTTTTSCHHHHCG--G-GTTSCC-CCCBCG-G-GCCGGGCSE
T ss_pred             cccCcEEEEECcCCHHHHHHHHHHHcCC-CcEEEEEeCchhcCCCHHHhCc--h-hcCccc-ccceec-c-hhHhcCCCE
Confidence            34457999999 7999999999999875 2577766543322112211110  0 111000 011111 2 334468999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ||+|+|.....+.....    +.|..+|+++.
T Consensus        86 Vf~atp~~~s~~~a~~~----~aG~~VId~sa  113 (359)
T 1xyg_A           86 VFCCLPHGTTQEIIKEL----PTALKIVDLSA  113 (359)
T ss_dssp             EEECCCTTTHHHHHHTS----CTTCEEEECSS
T ss_pred             EEEcCCchhHHHHHHHH----hCCCEEEECCc
Confidence            99999988776665543    56888999884

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=96.90  E-value=0.0017  Score=64.24  Aligned_cols=74  Identities=23%  Similarity=0.309  Sum_probs=51.5

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCCC-------eEEEEeCCH--HHHH----HHHhhcCCCccCCCCCCCCceEE
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQL-------KVYMLMRDP--AVCQ----SINEKHCNCRYFPEQKLPENVIA  189 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~-------~V~v~~r~~--~~~e----~l~~~g~~~~~~~~~~l~~~i~a  189 (458)
                      |...|||.|+|+ |.+|+.++..|.+.|  +       +|.++|+.+  +..+    .+....        ..+...+..
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g--~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~--------~~~~~di~~   70 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGE--MLGKDQPVILQLLEIPQAMKALEGVVMELEDCA--------FPLLAGLEA   70 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTT--TTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT--------CTTEEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCC--CCCCCCCCEEEEEeCCCchhhccchhhhhhccc--------ccccCCeEe
Confidence            334579999997 999999999999887  5       899999874  2222    121110        011123555


Q ss_pred             eCCHHhhcCCCCEEEEcC
Q 012720          190 TTDAKTALLGADYCLHAM  207 (458)
Q Consensus       190 ~~~~~ea~~~aDiVilaV  207 (458)
                      ..+..++++++|+||.+-
T Consensus        71 ~~~~~~a~~~~D~Vih~A   88 (327)
T 1y7t_A           71 TDDPKVAFKDADYALLVG   88 (327)
T ss_dssp             ESCHHHHTTTCSEEEECC
T ss_pred             ccChHHHhCCCCEEEECC
Confidence            567778889999999974

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.89  E-value=0.00094  Score=63.78  Aligned_cols=82  Identities=9%  Similarity=0.162  Sum_probs=60.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .|||+++|.|+||..+++.  . +  .++. +|+   +++..               +  ++.+++|+++.+.++|+|+.
T Consensus        12 ~~rV~i~G~GaIG~~v~~~--~-~--leLv~v~~---~k~ge---------------l--gv~a~~d~d~lla~pD~VVe   66 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL--G-N--FEKIYAYD---RISKD---------------I--PGVVRLDEFQVPSDVSTVVE   66 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH--S-C--CSEEEEEC---SSCCC---------------C--SSSEECSSCCCCTTCCEEEE
T ss_pred             cceEEEECcCHHHHHHHhc--C-C--cEEEEEEe---ccccc---------------c--CceeeCCHHHHhhCCCEEEE
Confidence            6899999999999999988  4 5  7764 566   22110               1  24567788888889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |-....+++.+   .+.|+.|.-+|.++-|.
T Consensus        67 ~A~~~av~e~~---~~iL~aG~dvv~~S~ga   94 (253)
T 1j5p_A           67 CASPEAVKEYS---LQILKNPVNYIIISTSA   94 (253)
T ss_dssp             CSCHHHHHHHH---HHHTTSSSEEEECCGGG
T ss_pred             CCCHHHHHHHH---HHHHHCCCCEEEcChhh
Confidence            99777666544   44556788888888764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.89  E-value=0.0026  Score=62.86  Aligned_cols=66  Identities=15%  Similarity=0.098  Sum_probs=48.8

Q ss_pred             CCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCE
Q 012720          127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~v~~r~~--~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDi  202 (458)
                      +|||.|||.|.+|.. +|..|.+.|  ++|+++|+..  ...+.+++.|..            +..-.++++.. .++|+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G--~~V~~~D~~~~~~~~~~L~~~gi~------------v~~g~~~~~l~~~~~d~   69 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAG--FEVSGCDAKMYPPMSTQLEALGID------------VYEGFDAAQLDEFKADV   69 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTT--CEEEEEESSCCTTHHHHHHHTTCE------------EEESCCGGGGGSCCCSE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCC--CEEEEEcCCCCcHHHHHHHhCCCE------------EECCCCHHHcCCCCCCE
Confidence            679999999999995 999999999  9999999864  345667766532            11112444443 47999


Q ss_pred             EEEc
Q 012720          203 CLHA  206 (458)
Q Consensus       203 Vila  206 (458)
                      ||++
T Consensus        70 vV~S   73 (326)
T 3eag_A           70 YVIG   73 (326)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9985

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.87  E-value=0.00081  Score=67.50  Aligned_cols=100  Identities=21%  Similarity=0.292  Sum_probs=60.4

Q ss_pred             CCCeEEEEC-cchHHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhhcCCCccCCC-CCCCCceEEeCCHHhhcCC
Q 012720          126 RTNKVVVLG-GGSFGTAMAAHVANKKS----QLKVYMLMRDPAVCQSINEKHCNCRYFPE-QKLPENVIATTDAKTALLG  199 (458)
Q Consensus       126 ~~~kI~IIG-aG~mG~~iA~~La~aG~----~~~V~v~~r~~~~~e~l~~~g~~~~~~~~-~~l~~~i~a~~~~~ea~~~  199 (458)
                      .||||+|+| .|.+|..+.+.|.+++.    ..+|+.+.+....-+.+....  .. +.+ ..+  .+.. .+.++ +.+
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~--~~-l~~~~~~--~~~~-~~~~~-~~~   80 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHH--PH-LTPLAHR--VVEP-TEAAV-LGG   80 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTC--TT-CGGGTTC--BCEE-CCHHH-HTT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhc--cc-cccccee--eecc-CCHHH-hcC
Confidence            467999999 89999999999997640    156776653221100111100  00 100 011  1111 24444 568


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|+||+|++.....+++..+    +.|..+|+++.-.
T Consensus        81 ~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~~  113 (352)
T 2nqt_A           81 HDAVFLALPHGHSAVLAQQL----SPETLIIDCGADF  113 (352)
T ss_dssp             CSEEEECCTTSCCHHHHHHS----CTTSEEEECSSTT
T ss_pred             CCEEEECCCCcchHHHHHHH----hCCCEEEEECCCc
Confidence            99999999988777766555    4578999998543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.87  E-value=0.00098  Score=65.11  Aligned_cols=72  Identities=19%  Similarity=0.307  Sum_probs=57.1

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH--hhcCCCCEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK--TALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~--ea~~~aDiV  203 (458)
                      .+++.|||.|. +|.++|..|.+.|  ..|++++|...                            +++  +.+++||+|
T Consensus       165 Gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~~~~T~----------------------------~l~l~~~~~~ADIV  214 (300)
T 4a26_A          165 GKRAVVLGRSNIVGAPVAALLMKEN--ATVTIVHSGTS----------------------------TEDMIDYLRTADIV  214 (300)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTSC----------------------------HHHHHHHHHTCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCCC----------------------------CchhhhhhccCCEE
Confidence            57999999877 7999999999998  89999987432                            233  667899999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |.+++...+   +  -..++++|++||++.
T Consensus       215 I~Avg~p~~---I--~~~~vk~GavVIDvg  239 (300)
T 4a26_A          215 IAAMGQPGY---V--KGEWIKEGAAVVDVG  239 (300)
T ss_dssp             EECSCCTTC---B--CGGGSCTTCEEEECC
T ss_pred             EECCCCCCC---C--cHHhcCCCcEEEEEe
Confidence            999996431   1  135678999999985

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.86  E-value=0.0021  Score=62.72  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||.|. +|..+|..|...|  ..|+++++..                            .++.+.++.||+||.
T Consensus       165 gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI~  214 (301)
T 1a4i_A          165 GRHAVVVGRSKIVGAPMHDLLLWNN--ATVTTCHSKT----------------------------AHLDEEVNKGDILVV  214 (301)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC--CeEEEEECCc----------------------------ccHHHHhccCCEEEE
Confidence            57999999996 7999999999998  8999987431                            267778899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++...+   +  =..++++|++||++.
T Consensus       215 Avg~p~~---I--~~~~vk~GavVIDVg  237 (301)
T 1a4i_A          215 ATGQPEM---V--KGEWIKPGAIVIDCG  237 (301)
T ss_dssp             CCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred             CCCCccc---C--CHHHcCCCcEEEEcc
Confidence            9997432   1  134578999999986

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.85  E-value=0.0039  Score=61.99  Aligned_cols=102  Identities=19%  Similarity=0.269  Sum_probs=65.4

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCe-----EEEEeCCH--HHHH----HHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLK-----VYMLMRDP--AVCQ----SINEKHCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~-----V~v~~r~~--~~~e----~l~~~g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      .+||+|+| +|.+|+.+|..|+..+.--+     +.++|+++  +.++    .+..  ...      .+-.++...++..
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~--~~~------~~~~~~~~~~~~~   74 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD--CAL------PLLKDVIATDKEE   74 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--TCC------TTEEEEEEESCHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHh--hhh------cccCCEEEcCCcH
Confidence            46999999 79999999999998762114     99999974  2322    2222  110      1112456666777


Q ss_pred             hhcCCCCEEEEcCcc-----c-----------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          195 TALLGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       195 ea~~~aDiVilaVp~-----~-----------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++++++|+||++--.     .           .++++++.+.++-+++..++..+|-+
T Consensus        75 ~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPv  132 (333)
T 5mdh_A           75 IAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPA  132 (333)
T ss_dssp             HHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCch
Confidence            789999999997521     1           14555566666655444577777743

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.85  E-value=0.0012  Score=60.28  Aligned_cols=70  Identities=16%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||.|.|+ |.+|..++..|+++|  ++|++++|+++..+.+. .+..  +...     .  ..+...+++.++|+||.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~-~~~~--~~~~-----D--~~d~~~~~~~~~d~vi~~   68 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNAGKITQTH-KDIN--ILQK-----D--IFDLTLSDLSDQNVVVDA   68 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCSHHHHHHC-SSSE--EEEC-----C--GGGCCHHHHTTCSEEEEC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCchhhhhcc-CCCe--EEec-----c--ccChhhhhhcCCCEEEEC
Confidence            68999995 999999999999999  99999999988766554 2211  1000     0  000001467889999998


Q ss_pred             Ccc
Q 012720          207 MPV  209 (458)
Q Consensus       207 Vp~  209 (458)
                      ...
T Consensus        69 ag~   71 (221)
T 3ew7_A           69 YGI   71 (221)
T ss_dssp             CCS
T ss_pred             CcC
Confidence            864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.84  E-value=0.0015  Score=63.35  Aligned_cols=72  Identities=25%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||.|. +|..+|..|...|  ..|++..+..                            .++++.+++||+||.
T Consensus       161 Gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI~  210 (285)
T 3l07_A          161 GAYAVVVGASNVVGKPVSQLLLNAK--ATVTTCHRFT----------------------------TDLKSHTTKADILIV  210 (285)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SSHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHhcccCCEEEE
Confidence            57999999887 7999999999998  8999987531                            166778899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++...+   +  -..++++|++||++.
T Consensus       211 Avg~p~~---I--~~~~vk~GavVIDvg  233 (285)
T 3l07_A          211 AVGKPNF---I--TADMVKEGAVVIDVG  233 (285)
T ss_dssp             CCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred             CCCCCCC---C--CHHHcCCCcEEEEec
Confidence            9985432   1  135678999999875

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.84  E-value=0.0014  Score=63.62  Aligned_cols=72  Identities=22%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||.|. +|.++|..|...|  ..|+++.+..                            .++++.++.||+||.
T Consensus       160 Gk~vvVvGrs~iVG~p~A~lL~~~g--AtVtv~h~~t----------------------------~~L~~~~~~ADIVI~  209 (285)
T 3p2o_A          160 GKDAVIIGASNIVGRPMATMLLNAG--ATVSVCHIKT----------------------------KDLSLYTRQADLIIV  209 (285)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHHhhcCCEEEE
Confidence            57999999887 6999999999998  8999987642                            166778899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++...+   +  -..++++|++||++.
T Consensus       210 Avg~p~~---I--~~~~vk~GavVIDVg  232 (285)
T 3p2o_A          210 AAGCVNL---L--RSDMVKEGVIVVDVG  232 (285)
T ss_dssp             CSSCTTC---B--CGGGSCTTEEEEECC
T ss_pred             CCCCCCc---C--CHHHcCCCeEEEEec
Confidence            9985322   1  135678999999875

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.84  E-value=0.0019  Score=64.76  Aligned_cols=103  Identities=17%  Similarity=0.244  Sum_probs=60.1

Q ss_pred             hcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHhhcCCCccCCCCCCC---CceEEeC-CHHhhc
Q 012720          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLP---ENVIATT-DAKTAL  197 (458)
Q Consensus       124 ~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~-r~~~~~e~l~~~g~~~~~~~~~~l~---~~i~a~~-~~~ea~  197 (458)
                      |++++||+|+| .|.+|..+.+.|.++. ..+|..+. .+...-+.+.+.+..   +.+..++   ..+.+.+ ++++ +
T Consensus         1 m~~~~kV~IiGAtG~iG~~llr~L~~~p-~~elvai~~s~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~-~   75 (350)
T 2ep5_A            1 MADKIKVSLLGSTGMVGQKMVKMLAKHP-YLELVKVSASPSKIGKKYKDAVKW---IEQGDIPEEVQDLPIVSTNYED-H   75 (350)
T ss_dssp             -CCCEEEEEESCSSHHHHHHHHHHTTCS-SEEEEEEECCGGGTTSBHHHHCCC---CSSSSCCHHHHTCBEECSSGGG-G
T ss_pred             CCCCcEEEEECcCCHHHHHHHHHHHhCC-CcEEEEEecChhhcCCCHHHhcCc---ccccccccCCceeEEeeCCHHH-h
Confidence            45568999999 7999999999998764 35776664 222111112111100   0000000   0112221 4444 4


Q ss_pred             CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       198 ~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      .++|+||+|+|.....+.......   .|..||+.+.
T Consensus        76 ~~vDvVf~atp~~~s~~~a~~~~~---aG~~VId~s~  109 (350)
T 2ep5_A           76 KDVDVVLSALPNELAESIELELVK---NGKIVVSNAS  109 (350)
T ss_dssp             TTCSEEEECCCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred             cCCCEEEECCChHHHHHHHHHHHH---CCCEEEECCc
Confidence            789999999998777666655543   4777898873

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=96.83  E-value=0.0019  Score=62.54  Aligned_cols=72  Identities=25%  Similarity=0.350  Sum_probs=57.6

Q ss_pred             CCeEEEECcchH-HHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGGSF-GTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~m-G~~iA~~La~a--G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .+++.|||.|.+ |..+|..|...  |  ..|+++.+..                            .++.+.+++||+|
T Consensus       158 gk~vvVvG~s~iVG~p~A~lL~~~g~~--atVtv~h~~t----------------------------~~L~~~~~~ADIV  207 (281)
T 2c2x_A          158 GAHVVVIGRGVTVGRPLGLLLTRRSEN--ATVTLCHTGT----------------------------RDLPALTRQADIV  207 (281)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHTSTTTC--CEEEEECTTC----------------------------SCHHHHHTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHhcCCCC--CEEEEEECch----------------------------hHHHHHHhhCCEE
Confidence            579999999975 99999999988  6  8999986543                            2677778999999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |.+++...+   +  -..++++|.+||++.
T Consensus       208 I~Avg~p~~---I--~~~~vk~GavVIDVg  232 (281)
T 2c2x_A          208 VAAVGVAHL---L--TADMVRPGAAVIDVG  232 (281)
T ss_dssp             EECSCCTTC---B--CGGGSCTTCEEEECC
T ss_pred             EECCCCCcc---c--CHHHcCCCcEEEEcc
Confidence            999996542   1  134578899999875

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.81  E-value=0.0019  Score=63.72  Aligned_cols=98  Identities=16%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC---HHHHHHHHhhcCCCccCCCCCCCCceEEe--CC---HHhhc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD---PAVCQSINEKHCNCRYFPEQKLPENVIAT--TD---AKTAL  197 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~---~~~~e~l~~~g~~~~~~~~~~l~~~i~a~--~~---~~ea~  197 (458)
                      .+++.|+|+|.+|.+++..|++.|  . +|++++|+   .++++++.+.-.. .      .+..+.+.  ++   +.+.+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~G--a~~V~i~nR~~~~~~~a~~la~~~~~-~------~~~~~~~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDG--VKEISIFNRKDDFYANAEKTVEKINS-K------TDCKAQLFDIEDHEQLRKEI  224 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECSSTTHHHHHHHHHHHHH-H------SSCEEEEEETTCHHHHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHHCC--CCEEEEEECCCchHHHHHHHHHHhhh-h------cCCceEEeccchHHHHHhhh
Confidence            568999999999999999999999  6 89999999   8777776543100 0      00012221  23   34556


Q ss_pred             CCCCEEEEcCccccHHH--HHHh-hhhcCCCCCeEEEec
Q 012720          198 LGADYCLHAMPVQFSSS--FLEG-ISDYVDPGLPFISLS  233 (458)
Q Consensus       198 ~~aDiVilaVp~~~v~~--vl~~-i~~~l~~~~ivV~~s  233 (458)
                      .++|+||-|+|..-...  ...- ....++++.+|+++.
T Consensus       225 ~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~Dlv  263 (315)
T 3tnl_A          225 AESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVV  263 (315)
T ss_dssp             HTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESC
T ss_pred             cCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEec
Confidence            78999999999531110  0000 123466788888876

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.0003  Score=64.99  Aligned_cols=76  Identities=24%  Similarity=0.390  Sum_probs=49.1

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |..||||.|.|+ |.+|..++..|++.|  ++|++++|+++..+.+. .+  ..+..     ..+.-.++..++++++|+
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~-~~--~~~~~-----~Dl~d~~~~~~~~~~~d~   70 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPEKIKIEN-EH--LKVKK-----ADVSSLDEVCEVCKGADA   70 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGGGCCCCC-TT--EEEEC-----CCTTCHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcccchhcc-Cc--eEEEE-----ecCCCHHHHHHHhcCCCE
Confidence            445789999995 999999999999999  99999999976432211 00  00000     000001123456778999


Q ss_pred             EEEcCcc
Q 012720          203 CLHAMPV  209 (458)
Q Consensus       203 VilaVp~  209 (458)
                      ||.+...
T Consensus        71 vi~~a~~   77 (227)
T 3dhn_A           71 VISAFNP   77 (227)
T ss_dssp             EEECCCC
T ss_pred             EEEeCcC
Confidence            9988753

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.78  E-value=0.0017  Score=63.09  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||.|. +|..+|..|...|  ..|+++++..                            .++.+.+++||+||.
T Consensus       159 gk~vvVIG~s~iVG~p~A~lL~~~g--AtVtv~hs~t----------------------------~~L~~~~~~ADIVI~  208 (288)
T 1b0a_A          159 GLNAVVIGASNIVGRPMSMELLLAG--CTTTVTHRFT----------------------------KNLRHHVENADLLIV  208 (288)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTT--CEEEEECSSC----------------------------SCHHHHHHHCSEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHCC--CeEEEEeCCc----------------------------hhHHHHhccCCEEEE
Confidence            57999999996 6999999999988  8999986443                            266777889999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++...+   +  =..++++|++||++.
T Consensus       209 Avg~p~l---I--~~~~vk~GavVIDVg  231 (288)
T 1b0a_A          209 AVGKPGF---I--PGDWIKEGAIVIDVG  231 (288)
T ss_dssp             CSCCTTC---B--CTTTSCTTCEEEECC
T ss_pred             CCCCcCc---C--CHHHcCCCcEEEEcc
Confidence            9996542   1  034578899999986

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.76  E-value=0.00028  Score=69.75  Aligned_cols=94  Identities=18%  Similarity=0.213  Sum_probs=62.4

Q ss_pred             CCeEEEECcchH-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceE-E--e--CCHHhhcCCC
Q 012720          127 TNKVVVLGGGSF-GTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI-A--T--TDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~m-G~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~-a--~--~~~~ea~~~a  200 (458)
                      .+++.|||+|.| |..+|..|...|  ..|++++|+..+.   .+....   +... . .... .  +  .++++.+++|
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~g--AtVtv~nR~~~~l---~~ra~~---la~~-~-~~~t~~~~t~~~~L~e~l~~A  246 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDG--ATVYSVDVNNIQK---FTRGES---LKLN-K-HHVEDLGEYSEDLLKKCSLDS  246 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTS--CEEEEECSSEEEE---EESCCC---SSCC-C-CEEEEEEECCHHHHHHHHHHC
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCC--CEEEEEeCchHHH---HhHHHH---Hhhh-c-ccccccccccHhHHHHHhccC
Confidence            579999999976 999999999998  8999999984321   110000   0000 0 0011 1  2  5778889999


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |+||.+++....  ++  -...+++|.+||++.-
T Consensus       247 DIVIsAtg~p~~--vI--~~e~vk~GavVIDVgi  276 (320)
T 1edz_A          247 DVVITGVPSENY--KF--PTEYIKEGAVCINFAC  276 (320)
T ss_dssp             SEEEECCCCTTC--CB--CTTTSCTTEEEEECSS
T ss_pred             CEEEECCCCCcc--ee--CHHHcCCCeEEEEcCC
Confidence            999999996431  00  0345678999999863

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.71  E-value=0.0005  Score=68.44  Aligned_cols=88  Identities=25%  Similarity=0.411  Sum_probs=57.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-------CCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-------QLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-------~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      ++||+|||+|.||..++..|.+...       +.+|. +++|+.++.     .+.          +. ..+++|.++.+ 
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-----~~~----------~~-~~~~~d~~~ll-   65 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-----RAI----------PQ-ELLRAEPFDLL-   65 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-----CSS----------CG-GGEESSCCCCT-
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-----hcc----------Cc-ccccCCHHHHh-
Confidence            5799999999999999999987520       14444 567775321     111          10 12566888877 


Q ss_pred             CCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEecc
Q 012720          199 GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       199 ~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +.|+|+.|++... ..+.+.   ..++.|..||+..+
T Consensus        66 ~iDvVve~t~~~~~a~~~~~---~AL~aGKhVVtaNk   99 (332)
T 2ejw_A           66 EADLVVEAMGGVEAPLRLVL---PALEAGIPLITANK   99 (332)
T ss_dssp             TCSEEEECCCCSHHHHHHHH---HHHHTTCCEEECCH
T ss_pred             CCCEEEECCCCcHHHHHHHH---HHHHcCCeEEECCc
Confidence            9999999999753 333433   23445777876544

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.69  E-value=0.0019  Score=54.77  Aligned_cols=87  Identities=14%  Similarity=0.075  Sum_probs=63.2

Q ss_pred             CCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .++|+|||+    |.+|..+..+|.+.|  ++|+.++...+.   +                .+..+..++++.-. .|+
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g--~~V~pVnP~~~~---i----------------~G~~~y~sl~dlp~-vDl   61 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHG--HEFIPVGRKKGE---V----------------LGKTIINERPVIEG-VDT   61 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHT--CCEEEESSSCSE---E----------------TTEECBCSCCCCTT-CCE
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCC--CeEEEECCCCCc---C----------------CCeeccCChHHCCC-CCE
Confidence            468999998    679999999999999  888888765321   1                12344456666444 999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +++++|+..+.++++++... .... | -++.|+..
T Consensus        62 avi~~p~~~v~~~v~e~~~~-g~k~-v-~~~~G~~~   94 (122)
T 3ff4_A           62 VTLYINPQNQLSEYNYILSL-KPKR-V-IFNPGTEN   94 (122)
T ss_dssp             EEECSCHHHHGGGHHHHHHH-CCSE-E-EECTTCCC
T ss_pred             EEEEeCHHHHHHHHHHHHhc-CCCE-E-EECCCCCh
Confidence            99999999999999887654 2223 3 36778764

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.68  E-value=0.0023  Score=63.77  Aligned_cols=103  Identities=18%  Similarity=0.247  Sum_probs=60.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHh-hcCCC-ccCCCC--CC-CCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINE-KHCNC-RYFPEQ--KL-PENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~-~g~~~-~~~~~~--~l-~~~i~a~~~~~ea~~~a  200 (458)
                      |+||+|+|+|+||..+++.|.++. +.+|. +.+++.+...++.. .+... ..+++.  .+ ..++.+..+.++.+.++
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~-~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   79 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQD-DMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSS-SEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCC-CcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCC
Confidence            468999999999999999998753 25664 35676544433332 21000 000000  00 01122223566666789


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+||.|+|.....+......+   .|..||+.+
T Consensus        80 DvV~~atp~~~~~~~a~~~l~---aG~~VId~s  109 (337)
T 1cf2_P           80 DIVIDCTPEGIGAKNLKMYKE---KGIKAIFQG  109 (337)
T ss_dssp             SEEEECCSTTHHHHHHHHHHH---HTCCEEECT
T ss_pred             CEEEECCCchhhHHHHHHHHH---cCCEEEEec
Confidence            999999998776666554433   355566655

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.67  E-value=0.002  Score=62.44  Aligned_cols=72  Identities=19%  Similarity=0.187  Sum_probs=57.4

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|||.|. +|.++|..|...|  ..|+++.+..                            .++++.++.||+||.
T Consensus       161 Gk~vvVvGrs~iVG~plA~lL~~~g--AtVtv~hs~T----------------------------~~L~~~~~~ADIVI~  210 (286)
T 4a5o_A          161 GMDAVVVGASNIVGRPMALELLLGG--CTVTVTHRFT----------------------------RDLADHVSRADLVVV  210 (286)
T ss_dssp             TCEEEEECTTSTTHHHHHHHHHHTT--CEEEEECTTC----------------------------SCHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCchhHHHHHHHHHHCC--CeEEEEeCCC----------------------------cCHHHHhccCCEEEE
Confidence            57999999876 8999999999998  8999986532                            156777899999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++...+   +  -..++++|++||++.
T Consensus       211 Avg~p~~---I--~~~~vk~GavVIDvg  233 (286)
T 4a5o_A          211 AAGKPGL---V--KGEWIKEGAIVIDVG  233 (286)
T ss_dssp             CCCCTTC---B--CGGGSCTTCEEEECC
T ss_pred             CCCCCCC---C--CHHHcCCCeEEEEec
Confidence            9985432   1  135678999999985

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.64  E-value=0.0025  Score=62.02  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=57.4

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhc--CCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANK--KSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GA  200 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~a--G~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~a  200 (458)
                      +++||+|||+|.||...+..|.+.  ..+.++. +++|+..     .+.     +        ++. ..|.+++++  +.
T Consensus         6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~~-----~--------g~~-~~~~~ell~~~~v   66 (294)
T 1lc0_A            6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GSL-----D--------EVR-QISLEDALRSQEI   66 (294)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CEE-----T--------TEE-BCCHHHHHHCSSE
T ss_pred             CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HHH-----c--------CCC-CCCHHHHhcCCCC
Confidence            467999999999999999888652  1115555 6677531     010     0        122 358888775  68


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+|++|+|.....+.......   .|..|+ +-|-+.
T Consensus        67 D~V~i~tp~~~H~~~~~~al~---aGkhVl-~EKPla   99 (294)
T 1lc0_A           67 DVAYICSESSSHEDYIRQFLQ---AGKHVL-VEYPMT   99 (294)
T ss_dssp             EEEEECSCGGGHHHHHHHHHH---TTCEEE-EESCSC
T ss_pred             CEEEEeCCcHhHHHHHHHHHH---CCCcEE-EeCCCC
Confidence            999999998776666554433   465554 355443

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=96.62  E-value=0.0028  Score=62.84  Aligned_cols=99  Identities=12%  Similarity=0.148  Sum_probs=59.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhc-----CCCCeEE-EEeCCHH---------HH-HHHHhhcCCCccCCCCCCCCceEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANK-----KSQLKVY-MLMRDPA---------VC-QSINEKHCNCRYFPEQKLPENVIA  189 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~a-----G~~~~V~-v~~r~~~---------~~-e~l~~~g~~~~~~~~~~l~~~i~a  189 (458)
                      +++||+|||+|.||..++..|.+.     |.+.+|. +.+++.+         .. +...+.+.    ++.      . .
T Consensus         3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~----~~~------~-~   71 (325)
T 3ing_A            3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGR----ISD------R-A   71 (325)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSC----SCS------S-B
T ss_pred             ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCC----CCc------c-c
Confidence            457999999999999999999874     2225555 4566542         11 11222221    000      0 0


Q ss_pred             eCCHHhhc--CCCCEEEEcCccccH-HHHHHhhhhcCCCCCeEEEeccCC
Q 012720          190 TTDAKTAL--LGADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       190 ~~~~~ea~--~~aDiVilaVp~~~v-~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      . |.++.+  .+.|+|+.|+|+... +...+.+...++.|..||...++.
T Consensus        72 ~-d~~e~l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~  120 (325)
T 3ing_A           72 F-SGPEDLMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSG  120 (325)
T ss_dssp             C-CSGGGGTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHH
T ss_pred             C-CHHHHhcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchh
Confidence            1 334444  368999999997543 333444455566788888877643

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.62  E-value=0.0029  Score=63.42  Aligned_cols=101  Identities=21%  Similarity=0.270  Sum_probs=59.9

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCc--cC--CCCCCCCceEEeCCHHhhcC-C
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCR--YF--PEQKLPENVIATTDAKTALL-G  199 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~--~~--~~~~l~~~i~a~~~~~ea~~-~  199 (458)
                      ++||+|+| .|.+|..+.+.|.++. .++|+.+.+++. ..+.+.+......  .+  .+..+  .+.. .++++..+ +
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p-~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~   83 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHP-MFELTALAASERSAGKKYKDACYWFQDRDIPENIKDM--VVIP-TDPKHEEFED   83 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCS-SEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTC--BCEE-SCTTSGGGTT
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCC-CCEEEEEEcccccccccHHHhcccccccccccCceee--EEEe-CCHHHHhcCC
Confidence            46999999 7999999999998764 367776653221 1111211110000  00  00000  1111 24555446 8


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|+||+|+|.....+....+..   .|..||+++.
T Consensus        84 ~DvV~~atp~~~~~~~a~~~~~---aG~~VId~s~  115 (354)
T 1ys4_A           84 VDIVFSALPSDLAKKFEPEFAK---EGKLIFSNAS  115 (354)
T ss_dssp             CCEEEECCCHHHHHHHHHHHHH---TTCEEEECCS
T ss_pred             CCEEEECCCchHHHHHHHHHHH---CCCEEEECCc
Confidence            9999999998877776666543   5778999874

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.61  E-value=0.00088  Score=62.36  Aligned_cols=80  Identities=14%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             CCeEEEECcchHHHHHHHHHH--hcCCCCeEE-EEeCCHH-HHHHHHhhcC-CCccCCCCCCCCceEEeCCHHhhcC--C
Q 012720          127 TNKVVVLGGGSFGTAMAAHVA--NKKSQLKVY-MLMRDPA-VCQSINEKHC-NCRYFPEQKLPENVIATTDAKTALL--G  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La--~aG~~~~V~-v~~r~~~-~~e~l~~~g~-~~~~~~~~~l~~~i~a~~~~~ea~~--~  199 (458)
                      ..+|+|+|+|++|.+++..+.  ..|  +++. ++|.+++ +.      |. .   ..+.    .+.-.+++++.++  +
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g--~~iVg~~D~dp~~ki------G~~~---i~Gv----pV~~~~dL~~~v~~~~  148 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNK--MQISMAFDLDSNDLV------GKTT---EDGI----PVYGISTINDHLIDSD  148 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSS--EEEEEEEECTTSTTT------TCBC---TTCC----BEEEGGGHHHHC-CCS
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCC--eEEEEEEeCCchhcc------Ccee---ECCe----EEeCHHHHHHHHHHcC
Confidence            468999999999999999843  334  6765 6788875 32      11 1   1111    1333467777766  5


Q ss_pred             CCEEEEcCccccHHHHHHhhhh
Q 012720          200 ADYCLHAMPVQFSSSFLEGISD  221 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~  221 (458)
                      .|.+|+|+|+....++.+.+.+
T Consensus       149 Id~vIIAvPs~~aq~v~d~lv~  170 (212)
T 3keo_A          149 IETAILTVPSTEAQEVADILVK  170 (212)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHH
T ss_pred             CCEEEEecCchhHHHHHHHHHH
Confidence            8999999999877777766543

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.59  E-value=0.012  Score=57.85  Aligned_cols=94  Identities=16%  Similarity=0.146  Sum_probs=67.1

Q ss_pred             CCCeEEEE-Cc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          126 RTNKVVVL-GG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       126 ~~~kI~II-Ga-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      +.++|+|| |+ |.+|...+..|.+.|  ++ .++..++...      +..         -.++.+..+++|+.+  ..|
T Consensus        12 ~~~siaVV~Gasg~~G~~~~~~l~~~G--~~-~v~~VnP~~~------g~~---------i~G~~vy~sl~el~~~~~vD   73 (305)
T 2fp4_A           12 DKNTKVICQGFTGKQGTFHSQQALEYG--TN-LVGGTTPGKG------GKT---------HLGLPVFNTVKEAKEQTGAT   73 (305)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHT--CE-EEEEECTTCT------TCE---------ETTEEEESSHHHHHHHHCCC
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHCC--Cc-EEEEeCCCcC------cce---------ECCeeeechHHHhhhcCCCC
Confidence            34678888 98 999999999999998  78 4455544310      000         014667778888877  899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      ++++++|.....++++++.+. .- ..+|.++.|+..+
T Consensus        74 ~avI~vP~~~~~~~~~e~i~~-Gi-~~iv~~t~G~~~~  109 (305)
T 2fp4_A           74 ASVIYVPPPFAAAAINEAIDA-EV-PLVVCITEGIPQQ  109 (305)
T ss_dssp             EEEECCCHHHHHHHHHHHHHT-TC-SEEEECCCCCCHH
T ss_pred             EEEEecCHHHHHHHHHHHHHC-CC-CEEEEECCCCChH
Confidence            999999999998888886552 11 2456678788654

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.58  E-value=0.008  Score=60.02  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=59.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhh-cCCC--cc-CCC-C-CC-CCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEK-HCNC--RY-FPE-Q-KL-PENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~-g~~~--~~-~~~-~-~l-~~~i~a~~~~~ea~~  198 (458)
                      |+||+|+|+|.+|..+++.|.++. +.+|. +.+++++....+.+. |...  ++ .++ . .+ ...+.+..+.++...
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~-~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~   80 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQD-DMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE   80 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSS-SEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCC-CceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc
Confidence            469999999999999999998763 26665 445555444444332 1000  00 000 0 00 011222234555557


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEE
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFIS  231 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~  231 (458)
                      ++|+|+.|++.....+..+  ..+++.|..||+
T Consensus        81 ~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~  111 (343)
T 2yyy_A           81 DADIVVDGAPKKIGKQNLE--NIYKPHKVKAIL  111 (343)
T ss_dssp             GCSEEEECCCTTHHHHHHH--HTTTTTTCEEEE
T ss_pred             CCCEEEECCCccccHHHHH--HHHHHCCCEEEE
Confidence            8999999999876555443  345666776664

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.57  E-value=0.0059  Score=61.66  Aligned_cols=93  Identities=20%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC----HHH----H----HHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD----PAV----C----QSINEKHCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~----~~~----~----e~l~~~g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      ..||.|+|+|.+|..+|+.|...|. .+|+++||+    .++    +    +.+.+. .+.           .....+++
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~-----------~~~~~~L~  258 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP-----------ERLSGDLE  258 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT-----------TCCCSCHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc-----------cCchhhHH
Confidence            4699999999999999999999992 389999998    433    1    122221 110           01134789


Q ss_pred             hhcCCCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          195 TALLGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       195 ea~~~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |+++++|++|-+.... ..+++++.    +.++.+|+.++|-.
T Consensus       259 eav~~ADVlIG~Sap~l~t~emVk~----Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          259 TALEGADFFIGVSRGNILKPEWIKK----MSRKPVIFALANPV  297 (388)
T ss_dssp             HHHTTCSEEEECSCSSCSCHHHHTT----SCSSCEEEECCSSS
T ss_pred             HHHccCCEEEEeCCCCccCHHHHHh----cCCCCEEEEcCCCC
Confidence            9999999999886532 24554444    55677999999844

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.55  E-value=0.0032  Score=62.04  Aligned_cols=96  Identities=21%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCC---HHHHHHHHhhcCCCccCCCCCCCCceEEe--CCH---Hhhc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRD---PAVCQSINEKHCNCRYFPEQKLPENVIAT--TDA---KTAL  197 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~---~~~~e~l~~~g~~~~~~~~~~l~~~i~a~--~~~---~ea~  197 (458)
                      .+++.|+|+|.+|.+++..|++.|  . +|++++|+   .++++++.+.-.. .      .+..+.+.  .+.   .+.+
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G--~~~v~v~nRt~~~~~~a~~la~~~~~-~------~~~~v~~~~~~~l~~~~~~l  218 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEG--IKEIKLFNRKDDFFEKAVAFAKRVNE-N------TDCVVTVTDLADQHAFTEAL  218 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECSSTHHHHHHHHHHHHHH-H------SSCEEEEEETTCHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcC--CCEEEEEECCCchHHHHHHHHHHhhh-c------cCcceEEechHhhhhhHhhc
Confidence            578999999999999999999998  6 89999999   7777776542100 0      00012221  233   3456


Q ss_pred             CCCCEEEEcCcccc--HHHHHHhh---hhcCCCCCeEEEec
Q 012720          198 LGADYCLHAMPVQF--SSSFLEGI---SDYVDPGLPFISLS  233 (458)
Q Consensus       198 ~~aDiVilaVp~~~--v~~vl~~i---~~~l~~~~ivV~~s  233 (458)
                      .++|+||-|+|..-  ...  ..+   ...++++.+|+++.
T Consensus       219 ~~~DiIINaTp~Gm~~~~~--~~~~~~~~~l~~~~~v~D~v  257 (312)
T 3t4e_A          219 ASADILTNGTKVGMKPLEN--ESLIGDVSLLRPELLVTECV  257 (312)
T ss_dssp             HHCSEEEECSSTTSTTSTT--CCSCCCGGGSCTTCEEEECC
T ss_pred             cCceEEEECCcCCCCCCCC--CcccCCHHHcCCCCEEEEec
Confidence            78999999999632  111  011   13456777888875

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.53  E-value=0.0029  Score=61.14  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHH---hhcCCCccCCCCCCCCceEEeCCHHhh
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD-----PAVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~-----~~~~e~l~---~~g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      .+|+|.|.|+ |.+|..++..|.+.|  ++|++++|+     +++.+.+.   ..+.  ....+     .+.-.+++.++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~--~~~~~-----D~~d~~~l~~~   73 (313)
T 1qyd_A            3 KKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEVVSNIDKVQMLLYFKQLGA--KLIEA-----SLDDHQRLVDA   73 (313)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCCSSCHHHHHHHHHHHTTTC--EEECC-----CSSCHHHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCC--CcEEEEECCCcccchhHHHHHHHHHhCCe--EEEeC-----CCCCHHHHHHH
Confidence            3689999996 999999999999999  999999998     44444332   2221  11100     01101234567


Q ss_pred             cCCCCEEEEcCcc
Q 012720          197 LLGADYCLHAMPV  209 (458)
Q Consensus       197 ~~~aDiVilaVp~  209 (458)
                      ++++|+||.+...
T Consensus        74 ~~~~d~vi~~a~~   86 (313)
T 1qyd_A           74 LKQVDVVISALAG   86 (313)
T ss_dssp             HTTCSEEEECCCC
T ss_pred             HhCCCEEEECCcc
Confidence            7899999998864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.51  E-value=0.00057  Score=63.89  Aligned_cols=76  Identities=21%  Similarity=0.384  Sum_probs=48.3

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||+|.|.| .|.+|..++..|++.| .++|++++|+++..+.+...+.  ...     ...+.-.++.+++++++|+||.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G-~~~V~~~~R~~~~~~~~~~~~~--~~~-----~~Dl~d~~~~~~~~~~~D~vv~   94 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQ-TIKQTLFARQPAKIHKPYPTNS--QII-----MGDVLNHAALKQAMQGQDIVYA   94 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCT-TEEEEEEESSGGGSCSSCCTTE--EEE-----ECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCC-CceEEEEEcChhhhcccccCCc--EEE-----EecCCCHHHHHHHhcCCCEEEE
Confidence            56899999 5999999999999987 2699999999864332211110  000     0000001123456778999998


Q ss_pred             cCccc
Q 012720          206 AMPVQ  210 (458)
Q Consensus       206 aVp~~  210 (458)
                      +....
T Consensus        95 ~a~~~   99 (236)
T 3qvo_A           95 NLTGE   99 (236)
T ss_dssp             ECCST
T ss_pred             cCCCC
Confidence            77653

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.51  E-value=0.0036  Score=62.24  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=58.6

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhc------CCCCeEE-EEeCCHHHHHH------HHhhcCCCccCCCCCCCCce-EE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANK------KSQLKVY-MLMRDPAVCQS------INEKHCNCRYFPEQKLPENV-IA  189 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~a------G~~~~V~-v~~r~~~~~e~------l~~~g~~~~~~~~~~l~~~i-~a  189 (458)
                      ||+++||+|||+|.||..++..|.+.      |.+.+|. +++|+.++.+.      +.+....          ..+ .+
T Consensus         3 mM~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~   72 (331)
T 3c8m_A            3 AMKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEK----------GSLDSL   72 (331)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHT----------TCGGGC
T ss_pred             CCcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhcc----------CCcccc
Confidence            44567999999999999999999764      2114554 56777543221      1110000          001 12


Q ss_pred             eC---CHHhhc-CCCCEEEEcCccc----cHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          190 TT---DAKTAL-LGADYCLHAMPVQ----FSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       190 ~~---~~~ea~-~~aDiVilaVp~~----~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      ++   |.++.+ .+.|+|+.|+|..    ...+.+   ...++.|..||+..+.
T Consensus        73 ~~~~~d~~~ll~~~iDvVv~~t~~~~~~~~~~~~~---~~AL~aGkhVvtanK~  123 (331)
T 3c8m_A           73 EYESISASEALARDFDIVVDATPASADGKKELAFY---KETFENGKDVVTANKS  123 (331)
T ss_dssp             CSEECCHHHHHHSSCSEEEECSCCCSSSHHHHHHH---HHHHHTTCEEEECCCH
T ss_pred             cCCCCCHHHHhCCCCCEEEECCCCCCccchHHHHH---HHHHHCCCeEEecCch
Confidence            23   677655 4689999999985    333333   3344468888876553

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.48  E-value=0.0094  Score=63.45  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=30.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ..||.|||+|.+|+.+|..|+.+|. -+++++|.+
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGV-G~ItLvD~D  360 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNG  360 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-CEEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            5799999999999999999999994 479999766

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.43  E-value=0.00095  Score=60.17  Aligned_cols=35  Identities=26%  Similarity=0.476  Sum_probs=32.6

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      |+|.|.|+ |.+|..++..|.+.|  ++|++++|+++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~~   39 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSR   39 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChhh
Confidence            79999998 999999999999999  999999998754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.42  E-value=0.0043  Score=59.78  Aligned_cols=86  Identities=13%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCC------HHHHHHHH---hhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD------PAVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~------~~~~e~l~---~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      .+|+|.|+|+ |.+|..++..|++.|  ++|++++|+      +++.+.+.   ..+..  ...+     .+.-.+++.+
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~--~v~~-----D~~d~~~l~~   73 (308)
T 1qyc_A            3 SRSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRESTASSNSEKAQLLESFKASGAN--IVHG-----SIDDHASLVE   73 (308)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHHHHHHHTTTCE--EECC-----CTTCHHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhCC--CCEEEEECCcccccCHHHHHHHHHHHhCCCE--EEEe-----ccCCHHHHHH
Confidence            3689999997 999999999999999  999999997      33333332   22211  1100     0000113455


Q ss_pred             hcCCCCEEEEcCccc---cHHHHHHhhh
Q 012720          196 ALLGADYCLHAMPVQ---FSSSFLEGIS  220 (458)
Q Consensus       196 a~~~aDiVilaVp~~---~v~~vl~~i~  220 (458)
                      +++++|+||.+....   ....+++.+.
T Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~l~~aa~  101 (308)
T 1qyc_A           74 AVKNVDVVISTVGSLQIESQVNIIKAIK  101 (308)
T ss_dssp             HHHTCSEEEECCCGGGSGGGHHHHHHHH
T ss_pred             HHcCCCEEEECCcchhhhhHHHHHHHHH
Confidence            678999999998743   3444444443

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.38  E-value=0.0041  Score=64.45  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC-----HHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD-----AKTALL  198 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~---~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~-----~~ea~~  198 (458)
                      .+||.|||+|.||+.++..|+++. ++   +|++.|......+.....|....         .+.++.+     ++++++
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~-dv~~~~I~vaD~~~~~~~~~~~~g~~~~---------~~~Vdadnv~~~l~aLl~   82 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKF-DIKPSQVTIIAAEGTKVDVAQQYGVSFK---------LQQITPQNYLEVIGSTLE   82 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHB-CCCGGGEEEEESSCCSCCHHHHHTCEEE---------ECCCCTTTHHHHTGGGCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCC-CCceeEEEEeccchhhhhHHhhcCCcee---------EEeccchhHHHHHHHHhc
Confidence            578999999999999999999975 24   68888876543222222232110         0112122     234566


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +.|+||-+.+.....++++...+   .|...+++.+
T Consensus        83 ~~DvVIN~s~~~~~l~Im~acle---aGv~YlDTa~  115 (480)
T 2ph5_A           83 ENDFLIDVSIGISSLALIILCNQ---KGALYINAAT  115 (480)
T ss_dssp             TTCEEEECCSSSCHHHHHHHHHH---HTCEEEESSC
T ss_pred             CCCEEEECCccccCHHHHHHHHH---cCCCEEECCC
Confidence            67999998888777777766554   3778888875

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.35  E-value=0.0057  Score=60.69  Aligned_cols=97  Identities=16%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc-------CCCCeEE-EEeCCHHHH------HHHHhhcCCCccCCCCCCCCceEEe--
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK-------KSQLKVY-MLMRDPAVC------QSINEKHCNCRYFPEQKLPENVIAT--  190 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a-------G~~~~V~-v~~r~~~~~------e~l~~~g~~~~~~~~~~l~~~i~a~--  190 (458)
                      |+||+|||+|.||..++..|.+.       |.+.+|. +++++....      +.+......            ...+  
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~------------~~~~~~   69 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET------------GMLRDD   69 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH------------SSCSBC
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC------------ccccCC
Confidence            57999999999999999999875       1225665 556764321      111111000            0112  


Q ss_pred             CCHHhhcC--CCCEEEEcCccccH-HHHHHhhhhcCCCCCeEEEeccC
Q 012720          191 TDAKTALL--GADYCLHAMPVQFS-SSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       191 ~~~~ea~~--~aDiVilaVp~~~v-~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      .|.++.+.  +.|+|+.|+|+... .+..+-+...++.|..||...|+
T Consensus        70 ~d~~~ll~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKk  117 (327)
T 3do5_A           70 AKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKG  117 (327)
T ss_dssp             CCHHHHHHHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSH
T ss_pred             CCHHHHhcCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCch
Confidence            27777664  68999999997642 11333345556678888876553

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.34  E-value=0.0027  Score=63.36  Aligned_cols=94  Identities=20%  Similarity=0.290  Sum_probs=55.8

Q ss_pred             hcCCCeEEEEC-cchHHHHHHHHHHhcCC-CCeEEEEe-CCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCC
Q 012720          124 LERTNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLM-RDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLG  199 (458)
Q Consensus       124 ~~~~~kI~IIG-aG~mG~~iA~~La~aG~-~~~V~v~~-r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~  199 (458)
                      |+.+|||+|+| .|.+|..+.+.|.++++ ..++..+. +...        |.... +.+.    .+.+. .++++ ..+
T Consensus         3 M~m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~--------g~~~~-~~g~----~i~~~~~~~~~-~~~   68 (340)
T 2hjs_A            3 MSQPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA--------GQRMG-FAES----SLRVGDVDSFD-FSS   68 (340)
T ss_dssp             --CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT--------TCEEE-ETTE----EEECEEGGGCC-GGG
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCC--------CCccc-cCCc----ceEEecCCHHH-hcC
Confidence            33357999999 69999999999986652 24555554 3211        11000 1110    11111 12322 568


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|+||+|+|.....+.+.....   .|..+|+++.
T Consensus        69 ~DvV~~a~g~~~s~~~a~~~~~---aG~kvId~Sa  100 (340)
T 2hjs_A           69 VGLAFFAAAAEVSRAHAERARA---AGCSVIDLSG  100 (340)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHH---TTCEEEETTC
T ss_pred             CCEEEEcCCcHHHHHHHHHHHH---CCCEEEEeCC
Confidence            9999999998776666655443   4777888773

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.34  E-value=0.0063  Score=57.98  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=30.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.++..|++.|. .+++++|++.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gv-g~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGV-GTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence            5799999999999999999999994 4788987763

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.27  E-value=0.0028  Score=63.76  Aligned_cols=103  Identities=23%  Similarity=0.289  Sum_probs=59.6

Q ss_pred             hcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHhhcCC--CccCC-CCCCCCceEEeCCHHhhcC
Q 012720          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCN--CRYFP-EQKLPENVIATTDAKTALL  198 (458)
Q Consensus       124 ~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~-r~~~~~e~l~~~g~~--~~~~~-~~~l~~~i~a~~~~~ea~~  198 (458)
                      |.+++||+||| .|..|.-+.+.|.++. ..++..+. ++.. -+.+.+..-.  ...++ +.. ...+.. .+.++ +.
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP-~~el~~l~S~~sa-Gk~~~~~~p~~~~~~~~~~~~-~~~v~~-~~~~~-~~   78 (359)
T 4dpk_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHP-YIKPAYLAGKGSV-GKPYGEVVRWQTVGQVPKEIA-DMEIKP-TDPKL-MD   78 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCS-SEEEEEEEESTTT-TSBHHHHCCCCSSSCCCHHHH-TCBCEE-CCGGG-CT
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCC-CceEEEEECchhc-CCChhHhcccccccccccccc-cceEEe-CCHHH-hc
Confidence            44567999999 5999999999888764 25666553 3321 1112111000  00000 000 001222 24433 57


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ++|+||+|+|.....+....+.+   .|..+|+++.
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~---~G~~vIDlSa  111 (359)
T 4dpk_A           79 DVDIIFSPLPQGAAGPVEEQFAK---EGFPVISNSP  111 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHH---TTCEEEECSS
T ss_pred             CCCEEEECCChHHHHHHHHHHHH---CCCEEEEcCC
Confidence            99999999999887777766543   5889999884

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.27  E-value=0.0028  Score=63.76  Aligned_cols=103  Identities=23%  Similarity=0.289  Sum_probs=59.6

Q ss_pred             hcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEe-CCHHHHHHHHhhcCC--CccCC-CCCCCCceEEeCCHHhhcC
Q 012720          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLM-RDPAVCQSINEKHCN--CRYFP-EQKLPENVIATTDAKTALL  198 (458)
Q Consensus       124 ~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~-r~~~~~e~l~~~g~~--~~~~~-~~~l~~~i~a~~~~~ea~~  198 (458)
                      |.+++||+||| .|..|.-+.+.|.++. ..++..+. ++.. -+.+.+..-.  ...++ +.. ...+.. .+.++ +.
T Consensus         4 M~~~~kVaIvGATGyvG~eLlrlL~~hP-~~el~~l~S~~sa-Gk~~~~~~p~~~~~~~~~~~~-~~~v~~-~~~~~-~~   78 (359)
T 4dpl_A            4 MRRTLKAAILGATGLVGIEYVRMLSNHP-YIKPAYLAGKGSV-GKPYGEVVRWQTVGQVPKEIA-DMEIKP-TDPKL-MD   78 (359)
T ss_dssp             --CCEEEEETTTTSTTHHHHHHHHTTCS-SEEEEEEEESTTT-TSBHHHHCCCCSSSCCCHHHH-TCBCEE-CCGGG-CT
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCC-CceEEEEECchhc-CCChhHhcccccccccccccc-cceEEe-CCHHH-hc
Confidence            44567999999 5999999999888764 25666553 3321 1112111000  00000 000 001222 24433 57


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ++|+||+|+|.....+....+.+   .|..+|+++.
T Consensus        79 ~vDvvf~a~p~~~s~~~a~~~~~---~G~~vIDlSa  111 (359)
T 4dpl_A           79 DVDIIFSPLPQGAAGPVEEQFAK---EGFPVISNSP  111 (359)
T ss_dssp             TCCEEEECCCTTTHHHHHHHHHH---TTCEEEECSS
T ss_pred             CCCEEEECCChHHHHHHHHHHHH---CCCEEEEcCC
Confidence            99999999999887777766543   5889999884

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.24  E-value=0.006  Score=59.13  Aligned_cols=100  Identities=16%  Similarity=0.264  Sum_probs=63.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+++.|+|+|.+|.++|..|++.|   +|++++|+.++++.+.+.-.. ..  .......+.+. +..+.+.++|+||.+
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G---~V~v~~r~~~~~~~l~~~~~~-~~--~~~~~~~~d~~-~~~~~~~~~DilVn~  200 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAE-KL--NKKFGEEVKFS-GLDVDLDGVDIIINA  200 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHH-HH--TCCHHHHEEEE-CTTCCCTTCCEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHhh-hc--ccccceeEEEe-eHHHhhCCCCEEEEC
Confidence            578999999999999999999876   899999998877766543100 00  00000012222 334556789999999


Q ss_pred             CccccHHH---HHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSS---FLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~---vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++......   ..-.-...++++.+++++.
T Consensus       201 ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~  230 (287)
T 1nvt_A          201 TPIGMYPNIDVEPIVKAEKLREDMVVMDLI  230 (287)
T ss_dssp             SCTTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred             CCCCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence            98543210   0000124566788888886

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.23  E-value=0.015  Score=55.85  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=36.1

Q ss_pred             cchhhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          120 KTDILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ..+.|+..+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus        17 ~~~~m~~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   66 (279)
T 3sju_A           17 RGSHMSRPQTAFVTGVSSGIGLAVARTLAARG--IAVYGCARDAKNVSAAVD   66 (279)
T ss_dssp             --------CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CcccccCCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            4456666778999996 899999999999999  999999999887666544

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.20  E-value=0.01  Score=59.15  Aligned_cols=102  Identities=14%  Similarity=0.119  Sum_probs=58.5

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEE-eC--CHHHHHHHHhh-cCCCccC-------CCCCCC---CceEEe--C
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MR--DPAVCQSINEK-HCNCRYF-------PEQKLP---ENVIAT--T  191 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~-~r--~~~~~e~l~~~-g~~~~~~-------~~~~l~---~~i~a~--~  191 (458)
                      +||+|+|+|++|..+++.|.++. +.+|..+ ++  +.+....+.+. -....+.       .+..+.   ..+.+.  .
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p-~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~   82 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSE-DVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR   82 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCS-SEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred             eEEEEECcCHHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence            59999999999999999998763 2666644 42  44444444321 1111110       011110   122333  2


Q ss_pred             CHHhhc---CCCCEEEEcCccccHHHHHHhhhhcCCCCC--eEEEec
Q 012720          192 DAKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (458)
Q Consensus       192 ~~~ea~---~~aDiVilaVp~~~v~~vl~~i~~~l~~~~--ivV~~s  233 (458)
                      |+++.-   .++|+||.|+|.....+......+   .|.  +||+..
T Consensus        83 dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~---aGak~VVIs~p  126 (337)
T 3e5r_O           83 NPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLK---GGAKKVVISAP  126 (337)
T ss_dssp             CGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEESSC
T ss_pred             ChHHccccccCCCEEEECCCchhhHHHHHHHHH---cCCCEEEEecC
Confidence            666531   479999999998776666544433   354  666654

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.11  E-value=0.005  Score=62.02  Aligned_cols=93  Identities=19%  Similarity=0.251  Sum_probs=58.1

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiV  203 (458)
                      ++||+||| .|..|.-+.+.|.+++++ .++.++.-.+.       .|.... +.+.    .+.+. .+. +.+.++|+|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~s-------aG~~~~-~~~~----~~~~~~~~~-~~~~~~Dvv   68 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-------AGKSLK-FKDQ----DITIEETTE-TAFEGVDIA   68 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTT-------TTCEEE-ETTE----EEEEEECCT-TTTTTCSEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEcccc-------CCCcce-ecCC----CceEeeCCH-HHhcCCCEE
Confidence            47999999 699999999999987521 24454443221       121111 1110    12221 122 336789999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      |+|+|.....+....+.+   .|..||+++.-
T Consensus        69 f~a~~~~~s~~~a~~~~~---~G~~vIDlSa~   97 (366)
T 3pwk_A           69 LFSAGSSTSAKYAPYAVK---AGVVVVDNTSY   97 (366)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred             EECCChHhHHHHHHHHHH---CCCEEEEcCCc
Confidence            999998777776666543   57889999853

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.05  E-value=0.0028  Score=61.95  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=47.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||.|.|+ |.+|..++..|++.|  ++|++++|++...+.+...+..  +..     ..+.-.++..++++++|+||.
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~l~~~~~~--~~~-----~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAG--HDLVLIHRPSSQIQRLAYLEPE--CRV-----AEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECTTSCGGGGGGGCCE--EEE-----CCTTCHHHHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEecChHhhhhhccCCeE--EEE-----ecCCCHHHHHHHHcCCCEEEE
Confidence            579999995 999999999999999  9999999987544333221111  000     000000134456788999999


Q ss_pred             cCc
Q 012720          206 AMP  208 (458)
Q Consensus       206 aVp  208 (458)
                      +..
T Consensus        84 ~a~   86 (342)
T 2x4g_A           84 SAG   86 (342)
T ss_dssp             C--
T ss_pred             CCc
Confidence            865

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.04  E-value=0.0045  Score=59.17  Aligned_cols=73  Identities=11%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             CeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||.|.|+ |.+|..++..|.+. |  ++|++++|+++....+...+..  +..     ..+.-.++.+++++++|+||.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g--~~V~~~~R~~~~~~~~~~~~v~--~~~-----~D~~d~~~l~~~~~~~d~vi~   71 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHI--DHFHIGVRNVEKVPDDWRGKVS--VRQ-----LDYFNQESMVEAFKGMDTVVF   71 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTC--TTEEEEESSGGGSCGGGBTTBE--EEE-----CCTTCHHHHHHHTTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCC--CcEEEEECCHHHHHHhhhCCCE--EEE-----cCCCCHHHHHHHHhCCCEEEE
Confidence            68999995 99999999999987 7  9999999998754443322211  000     000001134567889999999


Q ss_pred             cCcc
Q 012720          206 AMPV  209 (458)
Q Consensus       206 aVp~  209 (458)
                      +...
T Consensus        72 ~a~~   75 (289)
T 3e48_A           72 IPSI   75 (289)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            8764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.04  E-value=0.0095  Score=61.55  Aligned_cols=67  Identities=25%  Similarity=0.212  Sum_probs=48.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC-CC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG-AD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~----~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~-aD  201 (458)
                      .+||.|||+|..|.+.|..|.+.|  ++|+++|+..    ...+.+++.|..            +..-.++++.+.+ +|
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~~~~~~L~~~gi~------------~~~g~~~~~~~~~~~d   74 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDENPTAQSLLEEGIK------------VVCGSHPLELLDEDFC   74 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGCHHHHHHHHTTCE------------EEESCCCGGGGGSCEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCChHHHHHHhCCCE------------EEECCChHHhhcCCCC
Confidence            579999999999999999999999  9999999853    245566665532            1111233344455 89


Q ss_pred             EEEEcC
Q 012720          202 YCLHAM  207 (458)
Q Consensus       202 iVilaV  207 (458)
                      +||++.
T Consensus        75 ~vv~sp   80 (451)
T 3lk7_A           75 YMIKNP   80 (451)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            999863

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.01  E-value=0.0052  Score=59.12  Aligned_cols=84  Identities=17%  Similarity=0.171  Sum_probs=54.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH-------HHHHHHH---hhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP-------AVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~-------~~~e~l~---~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      ||+|.|.|+ |.+|..++..|++.|  ++|++++|+.       ++.+.+.   ..+.... ..+      +.-.+++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v-~~D------~~d~~~l~~   72 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAG--NPTYALVRKTITAANPETKEELIDNYQSLGVILL-EGD------INDHETLVK   72 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHT--CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEE-ECC------TTCHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCC--CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEE-EeC------CCCHHHHHH
Confidence            578999997 999999999999999  9999999986       5444332   2221100 000      000113456


Q ss_pred             hcCCCCEEEEcCccc---cHHHHHHhh
Q 012720          196 ALLGADYCLHAMPVQ---FSSSFLEGI  219 (458)
Q Consensus       196 a~~~aDiVilaVp~~---~v~~vl~~i  219 (458)
                      +++++|+||.+....   ....+++.+
T Consensus        73 ~~~~~d~vi~~a~~~~~~~~~~l~~aa   99 (307)
T 2gas_A           73 AIKQVDIVICAAGRLLIEDQVKIIKAI   99 (307)
T ss_dssp             HHTTCSEEEECSSSSCGGGHHHHHHHH
T ss_pred             HHhCCCEEEECCcccccccHHHHHHHH
Confidence            678999999988742   344444443

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.99  E-value=0.0059  Score=59.08  Aligned_cols=69  Identities=22%  Similarity=0.245  Sum_probs=48.1

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||.|.| .|.+|..++..|.+.|  ++|++++|++...+ +.  +.  .+.     ...+. ..+..++++++|+||.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~--~~--~~~-----~~Dl~-~~~~~~~~~~~d~Vih   68 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDG--NTPIILTRSIGNKA-IN--DY--EYR-----VSDYT-LEDLINQLNDVDAVVH   68 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC--------CC--EEE-----ECCCC-HHHHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCCccc-CC--ce--EEE-----Ecccc-HHHHHHhhcCCCEEEE
Confidence            57999999 5999999999999999  99999999854433 32  11  110     11122 3355677889999999


Q ss_pred             cCc
Q 012720          206 AMP  208 (458)
Q Consensus       206 aVp  208 (458)
                      +..
T Consensus        69 ~a~   71 (311)
T 3m2p_A           69 LAA   71 (311)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            865

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=95.98  E-value=0.0044  Score=61.70  Aligned_cols=93  Identities=14%  Similarity=0.235  Sum_probs=57.6

Q ss_pred             CCCeEEEEC-cchHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeC-CHHhhcCCCCE
Q 012720          126 RTNKVVVLG-GGSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATT-DAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIG-aG~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~-~~~ea~~~aDi  202 (458)
                      +|+||+|+| .|.+|..+.+.|.++++ ..+++.+......       |.... +.+    ..+.+.+ ++ +...++|+
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~-------G~~~~-~~~----~~i~~~~~~~-~~~~~vDv   68 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSE-------GKTYR-FNG----KTVRVQNVEE-FDWSQVHI   68 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTT-------TCEEE-ETT----EEEEEEEGGG-CCGGGCSE
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCC-------CCcee-ecC----ceeEEecCCh-HHhcCCCE
Confidence            368999999 89999999999988731 2566666532110       11100 111    1122221 22 23468999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      ||+|++.....+......   +.|..+|+++.
T Consensus        69 Vf~a~g~~~s~~~a~~~~---~~G~~vId~s~   97 (336)
T 2r00_A           69 ALFSAGGELSAKWAPIAA---EAGVVVIDNTS   97 (336)
T ss_dssp             EEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred             EEECCCchHHHHHHHHHH---HcCCEEEEcCC
Confidence            999999877666665543   35778888873

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.97  E-value=0.0055  Score=60.38  Aligned_cols=86  Identities=13%  Similarity=0.205  Sum_probs=55.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHH---HhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSI---NEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~----~~~e~l---~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      +|+|.|.|+ |.+|..++..|.+.|  ++|++++|+.    ++.+.+   ...+.... ..+      +.-.+++.++++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~-~~D------l~d~~~l~~~~~   80 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGAIIV-YGL------INEQEAMEKILK   80 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTCEEE-ECC------TTCHHHHHHHHH
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCcEEE-Eee------cCCHHHHHHHHh
Confidence            579999998 999999999999999  9999999976    444433   22222100 000      000113445667


Q ss_pred             --CCCEEEEcCccc---cHHHHHHhhhh
Q 012720          199 --GADYCLHAMPVQ---FSSSFLEGISD  221 (458)
Q Consensus       199 --~aDiVilaVp~~---~v~~vl~~i~~  221 (458)
                        ++|+||.+....   ....+++.+..
T Consensus        81 ~~~~d~Vi~~a~~~n~~~~~~l~~aa~~  108 (346)
T 3i6i_A           81 EHEIDIVVSTVGGESILDQIALVKAMKA  108 (346)
T ss_dssp             HTTCCEEEECCCGGGGGGHHHHHHHHHH
T ss_pred             hCCCCEEEECCchhhHHHHHHHHHHHHH
Confidence              999999998753   34455554433

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.92  E-value=0.0068  Score=64.34  Aligned_cols=122  Identities=10%  Similarity=0.099  Sum_probs=61.1

Q ss_pred             CcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012720           94 GRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (458)
Q Consensus        94 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~  173 (458)
                      .++|+....|..+.+.+......    .... . ++|.|+|+|.+|..+|..|.+.|  ++|++++.+++.++.+.    
T Consensus       321 ~~GD~L~v~g~~~~l~~~~~~~~----~~~~-~-~~viIiG~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~----  388 (565)
T 4gx0_A          321 TEQSLLVLAGTKSQLAALEYLIG----EAPE-D-ELIFIIGHGRIGCAAAAFLDRKP--VPFILIDRQESPVCNDH----  388 (565)
T ss_dssp             ------------------------------C-C-CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCCSSCCSS----
T ss_pred             CCCCEEEEEeCHHHHHHHHHHhc----CCCC-C-CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECChHHHhhcC----
Confidence            45677777777777553322222    2121 2 78999999999999999999999  99999999987654331    


Q ss_pred             CCccCCCCCCCCceEEeCCHHh-hcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          174 NCRYFPEQKLPENVIATTDAKT-ALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       174 ~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                       ..+.++..-+      +.+++ -++++|.+|++++++...-++-.+...+.++..+|.-.+
T Consensus       389 -~~i~gD~t~~------~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~~~iiar~~  443 (565)
T 4gx0_A          389 -VVVYGDATVG------QTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVARAN  443 (565)
T ss_dssp             -CEEESCSSSS------THHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred             -CEEEeCCCCH------HHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCCCEEEEEEC
Confidence             1111111000      11222 267899999999976433233333444555545555443

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=95.89  E-value=0.0085  Score=60.63  Aligned_cols=101  Identities=17%  Similarity=0.270  Sum_probs=58.9

Q ss_pred             CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEE-Ee-CCHHHHHHHHhhcCCCccCCCCCCC-----CceEEeCCHHhhc
Q 012720          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYM-LM-RDPAVCQSINEKHCNCRYFPEQKLP-----ENVIATTDAKTAL  197 (458)
Q Consensus       126 ~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v-~~-r~~~~~e~l~~~g~~~~~~~~~~l~-----~~i~a~~~~~ea~  197 (458)
                      .++||+||| .|..|.-|.+.|.++. ..++.. +. ++.. -+.+.+..   .++.+..+|     ..+... +.++.+
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp-~~el~~l~aS~~sa-Gk~~~~~~---~~~~~~~~p~~~~~~~v~~~-~~~~~~   91 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHP-EFEIHALGASSRSA-GKKYKDAA---SWKQTETLPETEQDIVVQEC-KPEGNF   91 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCS-SEEEEEEEECTTTT-TSBHHHHC---CCCCSSCCCHHHHTCBCEES-SSCTTG
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCC-CceEEEeecccccc-CCCHHHhc---ccccccccccccccceEEeC-chhhhc
Confidence            347899999 5999999999998764 256653 33 3221 11111110   001110111     012222 222135


Q ss_pred             CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       198 ~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      .++|+||+|+|.....++...+.+   .|..||+++.-
T Consensus        92 ~~~Dvvf~alp~~~s~~~~~~~~~---~G~~VIDlSa~  126 (381)
T 3hsk_A           92 LECDVVFSGLDADVAGDIEKSFVE---AGLAVVSNAKN  126 (381)
T ss_dssp             GGCSEEEECCCHHHHHHHHHHHHH---TTCEEEECCST
T ss_pred             ccCCEEEECCChhHHHHHHHHHHh---CCCEEEEcCCc
Confidence            789999999998877777766543   58889998843

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.86  E-value=0.003  Score=57.95  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=47.1

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVil  205 (458)
                      |||.|.| .|.+|..++..|++.|  ++|++++|+++..+.+  .+.  .+..     ..+.- .++..++++++|+||.
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~--~~~--~~~~-----~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTD--YQIYAGARKVEQVPQY--NNV--KAVH-----FDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSS--CEEEEEESSGGGSCCC--TTE--EEEE-----CCTTSCHHHHHTTTTTCSEEEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCccchhhc--CCc--eEEE-----ecccCCHHHHHHHHcCCCEEEE
Confidence            6899999 6999999999999999  9999999997643221  010  0000     00000 0123455678899998


Q ss_pred             cCcc
Q 012720          206 AMPV  209 (458)
Q Consensus       206 aVp~  209 (458)
                      +...
T Consensus        70 ~ag~   73 (219)
T 3dqp_A           70 VSGS   73 (219)
T ss_dssp             CCCC
T ss_pred             CCcC
Confidence            8764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.84  E-value=0.024  Score=55.02  Aligned_cols=75  Identities=13%  Similarity=0.126  Sum_probs=50.8

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----cCCCccC--CCCCCCCceEEeCCHHhhc
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----HCNCRYF--PEQKLPENVIATTDAKTAL  197 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-----g~~~~~~--~~~~l~~~i~a~~~~~ea~  197 (458)
                      ..|+|.|.|+ |.+|..++..|++.|  ++|++++|+.+..+.+.+.     +....+.  .+..-      ..+.++++
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d------~~~~~~~~   81 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK------QGAYDEVI   81 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS------TTTTTTTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC------hHHHHHHH
Confidence            4579999997 999999999999999  9999999998766554331     1111111  11110      11334556


Q ss_pred             CCCCEEEEcCc
Q 012720          198 LGADYCLHAMP  208 (458)
Q Consensus       198 ~~aDiVilaVp  208 (458)
                      +++|+||.+..
T Consensus        82 ~~~d~vih~A~   92 (342)
T 1y1p_A           82 KGAAGVAHIAS   92 (342)
T ss_dssp             TTCSEEEECCC
T ss_pred             cCCCEEEEeCC
Confidence            68999999864

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.83  E-value=0.012  Score=58.83  Aligned_cols=96  Identities=18%  Similarity=0.268  Sum_probs=60.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVi  204 (458)
                      |.||+|||+ |..|.-|.+.|.++. ..++..+.-.+..-+.+.+-.-.  +..      .+.+. .+.++...++|++|
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP-~~el~~l~S~~~aG~~~~~~~p~--~~~------~l~~~~~~~~~~~~~~Dvvf   83 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHP-EAKITYLSSRTYAGKKLEEIFPS--TLE------NSILSEFDPEKVSKNCDVLF   83 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCT-TEEEEEEECSTTTTSBHHHHCGG--GCC------CCBCBCCCHHHHHHHCSEEE
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCC-CcEEEEEeCcccccCChHHhChh--hcc------CceEEeCCHHHhhcCCCEEE
Confidence            569999995 999999999999875 35666665332111112111000  001      11111 14555446899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|+|.....++...+     .|..||+++.-.
T Consensus        84 ~alp~~~s~~~~~~~-----~g~~VIDlSsdf  110 (351)
T 1vkn_A           84 TALPAGASYDLVREL-----KGVKIIDLGADF  110 (351)
T ss_dssp             ECCSTTHHHHHHTTC-----CSCEEEESSSTT
T ss_pred             ECCCcHHHHHHHHHh-----CCCEEEECChhh
Confidence            999988777766554     588999998543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.82  E-value=0.0059  Score=60.85  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |||.|||+|..|..+|..|+++|  ++|++++|++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G--~~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHG--IKVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            79999999999999999999999  9999998754

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.76  E-value=0.0076  Score=58.50  Aligned_cols=85  Identities=16%  Similarity=0.221  Sum_probs=54.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH------HHHHHHH---hhcCCCccCCCCCCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP------AVCQSIN---EKHCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~------~~~e~l~---~~g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      ||+|.|.|+ |.+|..++..|++.|  ++|++++|+.      +..+.+.   ..+.... ..+      +.-.+++.++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v-~~D------~~d~~~l~~a   74 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS--HPTFIYARPLTPDSTPSSVQLREEFRSMGVTII-EGE------MEEHEKMVSV   74 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEE-ECC------TTCHHHHHHH
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC--CcEEEEECCcccccChHHHHHHHHhhcCCcEEE-Eec------CCCHHHHHHH
Confidence            578999996 999999999999999  9999999985      3333332   2221100 000      0001234567


Q ss_pred             cCCCCEEEEcCcc---ccHHHHHHhhh
Q 012720          197 LLGADYCLHAMPV---QFSSSFLEGIS  220 (458)
Q Consensus       197 ~~~aDiVilaVp~---~~v~~vl~~i~  220 (458)
                      ++++|+||.+...   .....+++.+.
T Consensus        75 ~~~~d~vi~~a~~~~~~~~~~l~~aa~  101 (321)
T 3c1o_A           75 LKQVDIVISALPFPMISSQIHIINAIK  101 (321)
T ss_dssp             HTTCSEEEECCCGGGSGGGHHHHHHHH
T ss_pred             HcCCCEEEECCCccchhhHHHHHHHHH
Confidence            7899999999874   23455554443

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.76  E-value=0.0076  Score=54.70  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..|+|||+|.-|...|..|+++|  ++|+++++.+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~   35 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSR   35 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCC
Confidence            46999999999999999999999  9999999864

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=95.73  E-value=0.033  Score=56.06  Aligned_cols=94  Identities=12%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             CCeEEEEC-cchHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLG-GGSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~-~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |+||+|+| .|.+|..+.+ .|.++++ ..++.++..+. .       |.....+.+..+  .+.-..++++ .+++|+|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~-------G~~v~~~~g~~i--~~~~~~~~~~-~~~~DvV   69 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-L-------GQAAPSFGGTTG--TLQDAFDLEA-LKALDII   69 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-T-------TSBCCGGGTCCC--BCEETTCHHH-HHTCSEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-C-------CCCccccCCCce--EEEecCChHH-hcCCCEE
Confidence            47999999 8999999999 5555431 12455554431 1       211110111111  1222234555 5789999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCC--eEEEecc
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGL--PFISLSK  234 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~--ivV~~sn  234 (458)
                      |.|++.....+....+.+   .|.  +||+.+.
T Consensus        70 f~a~g~~~s~~~a~~~~~---~G~k~vVID~ss   99 (367)
T 1t4b_A           70 VTCQGGDYTNEIYPKLRE---SGWQGYWIDAAS   99 (367)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred             EECCCchhHHHHHHHHHH---CCCCEEEEcCCh
Confidence            999998777777766544   354  8899874

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.72  E-value=0.0079  Score=58.36  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=54.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHH---HHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQS---INEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~---l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +++|.|.|+ |.+|..++..|.+.|  ++|++++|+.. ..+.   +...+.... ..+.      .-.+++.++++++|
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~l~~~~v~~v-~~Dl------~d~~~l~~a~~~~d   81 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLG--HPTYVFTRPNSSKTTLLDEFQSLGAIIV-KGEL------DEHEKLVELMKKVD   81 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECTTCSCHHHHHHHHHTTCEEE-ECCT------TCHHHHHHHHTTCS
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCC--CcEEEEECCCCchhhHHHHhhcCCCEEE-EecC------CCHHHHHHHHcCCC
Confidence            358999996 999999999999999  99999999864 3222   233232110 0000      00123456778999


Q ss_pred             EEEEcCccc---cHHHHHHhhh
Q 012720          202 YCLHAMPVQ---FSSSFLEGIS  220 (458)
Q Consensus       202 iVilaVp~~---~v~~vl~~i~  220 (458)
                      +||.+....   ....+++.+.
T Consensus        82 ~vi~~a~~~~~~~~~~l~~aa~  103 (318)
T 2r6j_A           82 VVISALAFPQILDQFKILEAIK  103 (318)
T ss_dssp             EEEECCCGGGSTTHHHHHHHHH
T ss_pred             EEEECCchhhhHHHHHHHHHHH
Confidence            999998742   3444554443

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.71  E-value=0.037  Score=55.38  Aligned_cols=103  Identities=14%  Similarity=0.087  Sum_probs=59.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC---CHHHHHHH-HhhcCCCccCCCC-----CCC---CceEEe--CC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR---DPAVCQSI-NEKHCNCRYFPEQ-----KLP---ENVIAT--TD  192 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r---~~~~~e~l-~~~g~~~~~~~~~-----~l~---~~i~a~--~~  192 (458)
                      |+||+|+|+|++|..+.+.|.++. +.+|..++-   +.+....+ +-.....++.+..     .+.   ..+.+.  .|
T Consensus        17 ~ikVgI~G~G~iGr~llR~l~~~p-~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d   95 (354)
T 3cps_A           17 QGTLGINGFGRIGRLVLRACMERN-DITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD   95 (354)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCS-SCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred             ceEEEEECCCHHHHHHHHHHHcCC-CeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence            579999999999999999998763 367765542   22222232 2221111111110     110   123333  25


Q ss_pred             HHhhc---CCCCEEEEcCccccHHHHHHhhhhcCCCCC--eEEEec
Q 012720          193 AKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (458)
Q Consensus       193 ~~ea~---~~aDiVilaVp~~~v~~vl~~i~~~l~~~~--ivV~~s  233 (458)
                      +++.-   .++|+||.|++.....+....   +++.|.  +||+.+
T Consensus        96 p~~i~w~~~~vDvV~eatg~~~s~e~a~~---~l~~GakkvVId~p  138 (354)
T 3cps_A           96 PAEIPWGASGAQIVCESTGVFTTEEKASL---HLKGGAKKVIISAP  138 (354)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCSHHHHGG---GGTTTCSEEEESSC
T ss_pred             hHHCCcccCCCCEEEECCCchhhHHHHHH---HHHcCCcEEEEeCC
Confidence            55531   479999999998776665544   444566  788775

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.71  E-value=0.021  Score=52.77  Aligned_cols=73  Identities=18%  Similarity=0.218  Sum_probs=49.2

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~a--G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .+|+|.|.|+ |.+|..++..|++.  |  ++|++.+|+++..+.+.   ....+..     ..+.-.++.+++++++|+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g--~~V~~~~r~~~~~~~~~---~~~~~~~-----~D~~d~~~~~~~~~~~d~   72 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDK--FVAKGLVRSAQGKEKIG---GEADVFI-----GDITDADSINPAFQGIDA   72 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTT--CEEEEEESCHHHHHHTT---CCTTEEE-----CCTTSHHHHHHHHTTCSE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCC--cEEEEEEcCCCchhhcC---CCeeEEE-----ecCCCHHHHHHHHcCCCE
Confidence            3679999995 99999999999999  7  99999999987655441   1111100     000000134456778999


Q ss_pred             EEEcCc
Q 012720          203 CLHAMP  208 (458)
Q Consensus       203 VilaVp  208 (458)
                      ||.+..
T Consensus        73 vi~~a~   78 (253)
T 1xq6_A           73 LVILTS   78 (253)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            998764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.71  E-value=0.017  Score=56.25  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.++..|+++|. -+++++|.+.
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGV-G~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGI-GKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCC-CEEEEECCCc
Confidence            4799999999999999999999995 4799999876

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.69  E-value=0.019  Score=56.23  Aligned_cols=77  Identities=13%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHHHhhc-----CCCccCCCCCCCCceEEeCCHH
Q 012720          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSINEKH-----CNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~----~~~e~l~~~g-----~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      +.+|+|.|.|+ |.+|..++..|.+.|  ++|++++|..    +..+.+....     .+..+..     ..+.-..+..
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~   95 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLN--QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE-----GDIRDLTTCE   95 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEE-----CCTTCHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEE-----ccCCCHHHHH
Confidence            34689999995 999999999999999  9999999953    3444444311     0001000     0000011244


Q ss_pred             hhcCCCCEEEEcCc
Q 012720          195 TALLGADYCLHAMP  208 (458)
Q Consensus       195 ea~~~aDiVilaVp  208 (458)
                      ++++++|+||.+..
T Consensus        96 ~~~~~~d~Vih~A~  109 (351)
T 3ruf_A           96 QVMKGVDHVLHQAA  109 (351)
T ss_dssp             HHTTTCSEEEECCC
T ss_pred             HHhcCCCEEEECCc
Confidence            56789999999875

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=95.69  E-value=0.028  Score=53.17  Aligned_cols=42  Identities=21%  Similarity=0.331  Sum_probs=36.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+|+.+..+.+.+
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   71 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSLG--ARVVLTARDVEKLRAVER   71 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            367888885 999999999999999  999999999987766544

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.67  E-value=0.0096  Score=57.23  Aligned_cols=75  Identities=23%  Similarity=0.259  Sum_probs=49.9

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~--e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .+|+|.|.|+ |.+|..++..|.+.| +++|++.+|+++..  +.+...+.... ..+.      .-.+++.++++++|+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~~V~~~~R~~~~~~~~~l~~~~~~~~-~~D~------~d~~~l~~~~~~~d~   75 (299)
T 2wm3_A            4 DKKLVVVFGGTGAQGGSVARTLLEDG-TFKVRVVTRNPRKKAAKELRLQGAEVV-QGDQ------DDQVIMELALNGAYA   75 (299)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHHC-SSEEEEEESCTTSHHHHHHHHTTCEEE-ECCT------TCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcC-CceEEEEEcCCCCHHHHHHHHCCCEEE-EecC------CCHHHHHHHHhcCCE
Confidence            3578999998 999999999999876 37999999986542  33333332100 0000      001134456789999


Q ss_pred             EEEcCc
Q 012720          203 CLHAMP  208 (458)
Q Consensus       203 VilaVp  208 (458)
                      ||.+..
T Consensus        76 vi~~a~   81 (299)
T 2wm3_A           76 TFIVTN   81 (299)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            999876

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.56  E-value=0.033  Score=55.75  Aligned_cols=88  Identities=14%  Similarity=0.075  Sum_probs=57.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVil  205 (458)
                      .++|+|+|.|++|...|..|...|  .+|+++|++++. ++..+..             +.+.. +.++.+. +||+++-
T Consensus       175 GktV~I~G~GnVG~~~A~~l~~~G--akVvvsD~~~~~-~~~a~~~-------------ga~~v-~~~ell~~~~DIliP  237 (355)
T 1c1d_A          175 GLTVLVQGLGAVGGSLASLAAEAG--AQLLVADTDTER-VAHAVAL-------------GHTAV-ALEDVLSTPCDVFAP  237 (355)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHH-HHHHHHT-------------TCEEC-CGGGGGGCCCSEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCccH-HHHHHhc-------------CCEEe-ChHHhhcCccceecH
Confidence            579999999999999999999998  899999998765 3333211             12222 4456555 8999986


Q ss_pred             cCcccc-HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQF-SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |--... ..+.+.    .++ ..+|+...|+-
T Consensus       238 ~A~~~~I~~~~~~----~lk-~~iVie~AN~p  264 (355)
T 1c1d_A          238 CAMGGVITTEVAR----TLD-CSVVAGAANNV  264 (355)
T ss_dssp             CSCSCCBCHHHHH----HCC-CSEECCSCTTC
T ss_pred             hHHHhhcCHHHHh----hCC-CCEEEECCCCC
Confidence            532211 222232    333 46777777664

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.53  E-value=0.011  Score=56.47  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=33.3

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .+|||.|.|+|.+|..++..|.++|  ++|++++|+.+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQG--HEVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTT--CCEEEEECTTS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcc
Confidence            4689999999999999999999999  99999999865

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=95.49  E-value=0.06  Score=54.16  Aligned_cols=93  Identities=12%  Similarity=0.175  Sum_probs=57.1

Q ss_pred             CeEEEECc-chHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          128 NKVVVLGG-GSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~-~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      |||+|||+ |..|.-|.+ .|.++.+ ..++.++.-+..        |.....+.+..  ..+...+++++ ++++|+||
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~a--------G~~~~~~~~~~--~~~~~~~~~~~-~~~~Dvvf   69 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI--------GVPAPNFGKDA--GMLHDAFDIES-LKQLDAVI   69 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSST--------TSBCCCSSSCC--CBCEETTCHHH-HTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEecccc--------CcCHHHhCCCc--eEEEecCChhH-hccCCEEE
Confidence            68999996 999999999 7776542 135555543221        22111111111  11232334444 58999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCC--CeEEEecc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPG--LPFISLSK  234 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~--~ivV~~sn  234 (458)
                      +|+|.....+....+.+   .|  .+||+++.
T Consensus        70 ~a~~~~~s~~~~~~~~~---~G~k~~VID~ss   98 (370)
T 3pzr_A           70 TCQGGSYTEKVYPALRQ---AGWKGYWIDAAS   98 (370)
T ss_dssp             ECSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred             ECCChHHHHHHHHHHHH---CCCCEEEEeCCc
Confidence            99998877777666543   35  48899884

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.47  E-value=0.0056  Score=60.80  Aligned_cols=75  Identities=13%  Similarity=0.258  Sum_probs=48.2

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceE-EeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI-ATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~-a~~~~~ea~~~aDi  202 (458)
                      .+|||.|.|+ |.+|..++..|.+. |  ++|++++|+.+..+.+.... ...+..     ..+. -..+.+++++++|+
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~~~~~~-~v~~~~-----~Dl~~d~~~~~~~~~~~d~   94 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTD--WEVFGMDMQTDRLGDLVKHE-RMHFFE-----GDITINKEWVEYHVKKCDV   94 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSS--CEEEEEESCCTTTGGGGGST-TEEEEE-----CCTTTCHHHHHHHHHHCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--CEEEEEeCChhhhhhhccCC-CeEEEe-----CccCCCHHHHHHHhccCCE
Confidence            3689999995 99999999999998 8  99999999876544332210 101000     0000 00123345678999


Q ss_pred             EEEcCc
Q 012720          203 CLHAMP  208 (458)
Q Consensus       203 VilaVp  208 (458)
                      ||.+.-
T Consensus        95 Vih~A~  100 (372)
T 3slg_A           95 ILPLVA  100 (372)
T ss_dssp             EEECBC
T ss_pred             EEEcCc
Confidence            998654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=95.43  E-value=0.039  Score=52.55  Aligned_cols=44  Identities=18%  Similarity=0.307  Sum_probs=37.2

Q ss_pred             cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +..+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++.++.+.+
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   46 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAG--AKILLGARRQARIEAIAT   46 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            34567889996 889999999999999  999999999887766554

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.42  E-value=0.0057  Score=58.24  Aligned_cols=72  Identities=15%  Similarity=0.277  Sum_probs=50.1

Q ss_pred             CeEEEECc-chHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~a--G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      |+|.|.|+ |.+|..++..|++.  |  ++|++++|+++..+.+...+.... ..+.      .-.++..++++++|+||
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g--~~V~~~~r~~~~~~~l~~~~~~~~-~~D~------~d~~~l~~~~~~~d~vi   71 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPA--SQIIAIVRNVEKASTLADQGVEVR-HGDY------NQPESLQKAFAGVSKLL   71 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCG--GGEEEEESCTTTTHHHHHTTCEEE-ECCT------TCHHHHHHHTTTCSEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCC--CeEEEEEcCHHHHhHHhhcCCeEE-Eecc------CCHHHHHHHHhcCCEEE
Confidence            57999997 99999999999998  8  999999998876655544322100 0010      00113446678899999


Q ss_pred             EcCc
Q 012720          205 HAMP  208 (458)
Q Consensus       205 laVp  208 (458)
                      .+..
T Consensus        72 ~~a~   75 (287)
T 2jl1_A           72 FISG   75 (287)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            8875

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.41  E-value=0.018  Score=56.90  Aligned_cols=78  Identities=26%  Similarity=0.460  Sum_probs=52.5

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhc-CCCC-eEEEEeCCHHHHHHHHhhcC--CCccCCCCCCCCceEEeCCHHhhcC
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANK-KSQL-KVYMLMRDPAVCQSINEKHC--NCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~a-G~~~-~V~v~~r~~~~~e~l~~~g~--~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      |++.|+|.|.|+ |.+|..++..|++. |  + +|++++|++...+.+.+.-.  ...+..     ..+.-.++..++++
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~-----~Dl~d~~~l~~~~~   90 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTN--AKKIIVYSRDELKQSEMAMEFNDPRMRFFI-----GDVRDLERLNYALE   90 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCC--CSEEEEEESCHHHHHHHHHHHCCTTEEEEE-----CCTTCHHHHHHHTT
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCC--CCEEEEEECChhhHHHHHHHhcCCCEEEEE-----CCCCCHHHHHHHHh
Confidence            344689999995 99999999999999 8  7 99999999887666544210  101000     00100112345677


Q ss_pred             CCCEEEEcCc
Q 012720          199 GADYCLHAMP  208 (458)
Q Consensus       199 ~aDiVilaVp  208 (458)
                      ++|+||.+..
T Consensus        91 ~~D~Vih~Aa  100 (344)
T 2gn4_A           91 GVDICIHAAA  100 (344)
T ss_dssp             TCSEEEECCC
T ss_pred             cCCEEEECCC
Confidence            8999999874

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.41  E-value=0.014  Score=56.11  Aligned_cols=34  Identities=32%  Similarity=0.546  Sum_probs=31.6

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |||.|.|+ |-+|+.++..|.++|  |+|+++.|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G--~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARG--HEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence            79999997 999999999999999  99999999753

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.35  E-value=0.028  Score=54.17  Aligned_cols=77  Identities=22%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--CCHHhhcCCCCEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--TDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~--~~~~ea~~~aDiV  203 (458)
                      .+++.|+| +|.+|.+++..|++.|  .+|++++|+.++.+.+.+.-.. .  .+... ....++  ++.+++++++|+|
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G--~~V~i~~R~~~~~~~l~~~~~~-~--~~~~~-~~~D~~~~~~~~~~~~~~Dvl  192 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAADSVNK-R--FKVNV-TAAETADDASRAEAVKGAHFV  192 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHH-H--HTCCC-EEEECCSHHHHHHHTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEECCHHHHHHHHHHHHh-c--CCcEE-EEecCCCHHHHHHHHHhCCEE
Confidence            47899999 8999999999999999  8899999998877666432100 0  00000 000111  1234456678888


Q ss_pred             EEcCcc
Q 012720          204 LHAMPV  209 (458)
Q Consensus       204 ilaVp~  209 (458)
                      |-+.+.
T Consensus       193 Vn~ag~  198 (287)
T 1lu9_A          193 FTAGAI  198 (287)
T ss_dssp             EECCCT
T ss_pred             EECCCc
Confidence            888863

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.34  E-value=0.12  Score=51.58  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.+|..|+.+|. -.++++|++.
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGv-g~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGI-GEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEECCCc
Confidence            5799999999999999999999994 4799999874

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.34  E-value=0.078  Score=52.69  Aligned_cols=103  Identities=18%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHh---cCCCCeEEEE-eC-CHHHHHHHHhh-cCCCccCCC-----CCC---CCceEEe--
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYML-MR-DPAVCQSINEK-HCNCRYFPE-----QKL---PENVIAT--  190 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~---aG~~~~V~v~-~r-~~~~~e~l~~~-g~~~~~~~~-----~~l---~~~i~a~--  190 (458)
                      ++||+|+|+|++|..+.+.|.+   +. +.+|... ++ +.+....+-+. -...++...     ..+   ...+.+.  
T Consensus         2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~-~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~   80 (339)
T 2x5j_O            2 TVRVAINGFGRIGRNVVRALYESGRRA-EITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHE   80 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTSGGG-TEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCCC-CEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEec
Confidence            3699999999999999999987   52 2666544 33 44444444331 111111100     011   1123333  


Q ss_pred             CCHHhhc-C--CCCEEEEcCccccHHHHHHhhhhcCCCCC--eEEEec
Q 012720          191 TDAKTAL-L--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (458)
Q Consensus       191 ~~~~ea~-~--~aDiVilaVp~~~v~~vl~~i~~~l~~~~--ivV~~s  233 (458)
                      .|+++.. +  ++|+||.|++.....+......+   .|.  +||+..
T Consensus        81 ~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~  125 (339)
T 2x5j_O           81 RSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIA---AGAKKVLFSHP  125 (339)
T ss_dssp             SSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHH---TTCSEEEESSC
T ss_pred             CChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCCEEEEecc
Confidence            3555521 1  79999999998776665554433   343  466655

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.34  E-value=0.006  Score=56.60  Aligned_cols=75  Identities=19%  Similarity=0.241  Sum_probs=48.0

Q ss_pred             CCCeEEEEC-cchHHHHHHHHHHhcCCCC--eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQL--KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIG-aG~mG~~iA~~La~aG~~~--~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ..|+|.|.| .|.+|..++..|++.|  +  +|++++|+++..+.....+.  .+.     ...+.-.++.+++++++|+
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G--~~~~V~~~~r~~~~~~~~~~~~~--~~~-----~~D~~d~~~~~~~~~~~d~   87 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQG--LFSKVTLIGRRKLTFDEEAYKNV--NQE-----VVDFEKLDDYASAFQGHDV   87 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHT--CCSEEEEEESSCCCCCSGGGGGC--EEE-----ECCGGGGGGGGGGGSSCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCC--CCCEEEEEEcCCCCccccccCCc--eEE-----ecCcCCHHHHHHHhcCCCE
Confidence            457999999 5999999999999999  8  99999998753221111110  000     0000001233455678899


Q ss_pred             EEEcCcc
Q 012720          203 CLHAMPV  209 (458)
Q Consensus       203 VilaVp~  209 (458)
                      ||.+...
T Consensus        88 vi~~ag~   94 (242)
T 2bka_A           88 GFCCLGT   94 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9998764

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.29  E-value=0.07  Score=52.83  Aligned_cols=105  Identities=14%  Similarity=0.145  Sum_probs=59.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEE-eC-CHHHHHHHHhhcC-CCccCCCC-----CCC---CceEEe--CCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MR-DPAVCQSINEKHC-NCRYFPEQ-----KLP---ENVIAT--TDA  193 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~-~r-~~~~~e~l~~~g~-~~~~~~~~-----~l~---~~i~a~--~~~  193 (458)
                      |+||+|+|.|.+|.-+.+.|.++. +.+|... ++ +.+....+.+... ...+....     .+.   ..+.+.  .|+
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~~-~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKRS-DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCS-SEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCC-CeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            358999999999999999998764 3566544 34 3444333333211 11111110     010   112233  245


Q ss_pred             Hhhc---CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          194 KTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       194 ~ea~---~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      ++.-   .++|+||.|+|.....+......   +.|..+|+++..
T Consensus        80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~l---~~GakvVdlSa~  121 (330)
T 1gad_O           80 ANLKWDEVGVDVVAEATGLFLTDETARKHI---TAGAKKVVMTGP  121 (330)
T ss_dssp             GGGCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESSC
T ss_pred             hhCccccccCCEEEECCCccccHHHHHHHH---HCCCEEEEECCC
Confidence            5421   47999999999876665554433   346677777643

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.22  E-value=0.072  Score=53.72  Aligned_cols=93  Identities=13%  Similarity=0.135  Sum_probs=53.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcC-CCCeEEEE-eC-CHHHHHHHHhhcC-CCccCCCC-----CC--C-CceEE--eCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MR-DPAVCQSINEKHC-NCRYFPEQ-----KL--P-ENVIA--TTD  192 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG-~~~~V~v~-~r-~~~~~e~l~~~g~-~~~~~~~~-----~l--~-~~i~a--~~~  192 (458)
                      ++||+|+|+|++|..+.+.|.+++ .+.+|..+ ++ +.+....+.+... .-++....     .+  . ..+.+  ..|
T Consensus         2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (380)
T 2d2i_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (380)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence            369999999999999999998762 13566544 43 4444444433211 11111110     11  0 12333  246


Q ss_pred             HHhhc---CCCCEEEEcCccccHHHHHHhh
Q 012720          193 AKTAL---LGADYCLHAMPVQFSSSFLEGI  219 (458)
Q Consensus       193 ~~ea~---~~aDiVilaVp~~~v~~vl~~i  219 (458)
                      +++..   .++|+||.|++.....+.....
T Consensus        82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~h  111 (380)
T 2d2i_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKH  111 (380)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCBHHHHHHH
T ss_pred             hHHCCcccCCCCEEEECCCccccHHHHHHH
Confidence            65532   2799999999987666555443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.17  E-value=0.081  Score=49.83  Aligned_cols=42  Identities=14%  Similarity=0.124  Sum_probs=36.5

Q ss_pred             CCeEEEECc-c-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-G-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ | .+|..+|..|++.|  ++|++.+|+.+..+.+.+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~   65 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEG--ADVVISDYHERRLGETRD   65 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCC--CEEEEecCCHHHHHHHHH
Confidence            468999998 8 59999999999999  999999999887666544

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.15  E-value=0.075  Score=52.82  Aligned_cols=104  Identities=13%  Similarity=0.155  Sum_probs=58.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcC-CCCeEEEE-eC-CHHHHHHHHhhc-CCCccCCCC-----CC--C-CceEE--eCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MR-DPAVCQSINEKH-CNCRYFPEQ-----KL--P-ENVIA--TTD  192 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG-~~~~V~v~-~r-~~~~~e~l~~~g-~~~~~~~~~-----~l--~-~~i~a--~~~  192 (458)
                      ++||+|+|+|++|..+.+.|.+++ .+.+|..+ ++ +.+....+.+.. ..-++....     .+  . ..+.+  ..|
T Consensus         2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d   81 (339)
T 3b1j_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN   81 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred             ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence            369999999999999999998762 13666544 44 444444443321 111111111     11  0 11333  246


Q ss_pred             HHhhc---CCCCEEEEcCccccHHHHHHhhhhcCCCCCe--EEEec
Q 012720          193 AKTAL---LGADYCLHAMPVQFSSSFLEGISDYVDPGLP--FISLS  233 (458)
Q Consensus       193 ~~ea~---~~aDiVilaVp~~~v~~vl~~i~~~l~~~~i--vV~~s  233 (458)
                      +++..   .++|+||.|++.....+......+   .|..  ||+..
T Consensus        82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~  124 (339)
T 3b1j_A           82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQ---AGAKKVLITAP  124 (339)
T ss_dssp             GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHH---TTCSEEEESSC
T ss_pred             hHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCcEEEEeCC
Confidence            66532   278999999998766555544332   3433  55554

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=95.09  E-value=0.084  Score=53.24  Aligned_cols=94  Identities=12%  Similarity=0.170  Sum_probs=57.5

Q ss_pred             CCeEEEECc-chHHHHHHH-HHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGG-GSFGTAMAA-HVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~-~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      .+||+|||+ |..|.-|.+ .|.++.+ ..++.++.-+..        |.....+.+..+  .+...+++++ +.++|+|
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~a--------G~~~~~~~~~~~--~v~~~~~~~~-~~~vDvv   72 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNA--------GGKAPSFAKNET--TLKDATSIDD-LKKCDVI   72 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCT--------TSBCCTTCCSCC--BCEETTCHHH-HHTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhc--------CCCHHHcCCCce--EEEeCCChhH-hcCCCEE
Confidence            579999996 999999999 7776541 134555543221        211111111111  1232234444 5789999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCC--CeEEEecc
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPG--LPFISLSK  234 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~--~ivV~~sn  234 (458)
                      |+|+|.....+....+.+   .|  .+||+++.
T Consensus        73 f~a~~~~~s~~~~~~~~~---~G~k~~VID~ss  102 (377)
T 3uw3_A           73 ITCQGGDYTNDVFPKLRA---AGWNGYWIDAAS  102 (377)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCCSEEEECSS
T ss_pred             EECCChHHHHHHHHHHHH---CCCCEEEEeCCc
Confidence            999998877777766543   35  48999884

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.08  E-value=0.022  Score=56.33  Aligned_cols=34  Identities=41%  Similarity=0.551  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +.+|.|||+|.+|.+.|..|+++|  ++|+++++..
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~~   39 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKG--YSVHILARDL   39 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccC
Confidence            468999999999999999999999  9999999753

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.08  E-value=0.12  Score=51.16  Aligned_cols=104  Identities=12%  Similarity=0.086  Sum_probs=57.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEe-C-CHHHHHHHHhhc-CCCccCCCC------C--CC-CceEEe--C
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLM-R-DPAVCQSINEKH-CNCRYFPEQ------K--LP-ENVIAT--T  191 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~-r-~~~~~e~l~~~g-~~~~~~~~~------~--l~-~~i~a~--~  191 (458)
                      ++||+|+|+|++|..+.+.|.++++ ..+|..++ . +.+....+-+.. ..-++....      .  +. ..+.+.  .
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~   80 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR   80 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence            3589999999999999999987631 24555443 2 333333433221 111111111      1  11 112222  3


Q ss_pred             CHHhh-cC--CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          192 DAKTA-LL--GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       192 ~~~ea-~~--~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++++. .+  ++|+||.|++.....+......   +.|..+|+++
T Consensus        81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l---~~Gak~V~iS  122 (337)
T 1rm4_O           81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHL---QAGAKKVLIT  122 (337)
T ss_dssp             CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHH---HTTCSEEEES
T ss_pred             ChhhCcccccCCCEEEECCCchhhHHHHHHHH---HcCCEEEEEC
Confidence            55442 23  7999999999876666555443   3466666665

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=95.06  E-value=0.017  Score=59.53  Aligned_cols=100  Identities=10%  Similarity=0.079  Sum_probs=63.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC---eEEEEe----CC----HH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL---KVYMLM----RD----PA-VCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~---~V~v~~----r~----~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      ..||.|+|+|.+|.+++..|.+.|  .   +|++++    |+    .. ..+.+....  ..+...  .... ....++.
T Consensus       186 ~~rvlvlGAGgAg~aia~~L~~~G--~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~--~~~a~~--~~~~-~~~~~L~  258 (439)
T 2dvm_A          186 EITLALFGAGAAGFATLRILTEAG--VKPENVRVVELVNGKPRILTSDLDLEKLFPYR--GWLLKK--TNGE-NIEGGPQ  258 (439)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTT--CCGGGEEEEEEETTEEEECCTTSCHHHHSTTC--HHHHTT--SCTT-CCCSSHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcC--CCcCeEEEEEccCCCcCccccccchhHHHHHH--HHHhhc--cccc-cccccHH
Confidence            468999999999999999999999  6   899999    87    32 111122100  000000  0000 0123677


Q ss_pred             hhcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          195 TALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       195 ea~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++++++|++|-+++.  .....   +....+.++.+|+++.|-.
T Consensus       259 e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDLynP~  299 (439)
T 2dvm_A          259 EALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPLANPV  299 (439)
T ss_dssp             HHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEECCSSS
T ss_pred             HHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEECCCCC
Confidence            888999999999997  32221   1233466778899997643

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.02  E-value=0.058  Score=56.76  Aligned_cols=71  Identities=7%  Similarity=-0.053  Sum_probs=48.2

Q ss_pred             hhhcCCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          122 DILERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       122 ~~~~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~v~~r~~--~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      +++.+.+||.|||.|..|.. +|..|.+.|  ++|+++|...  ...+.+++.|..            +..-.+++....
T Consensus        14 ~~~~~~~~i~~iGiGg~Gms~lA~~l~~~G--~~V~~sD~~~~~~~~~~L~~~gi~------------~~~G~~~~~~~~   79 (524)
T 3hn7_A           14 NLYFQGMHIHILGICGTFMGSLALLARALG--HTVTGSDANIYPPMSTQLEQAGVT------------IEEGYLIAHLQP   79 (524)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCCTTHHHHHHHTTCE------------EEESCCGGGGCS
T ss_pred             ceeecCCEEEEEEecHhhHHHHHHHHHhCC--CEEEEECCCCCcHHHHHHHHCCCE------------EECCCCHHHcCC
Confidence            35556789999999999996 788889999  9999999863  345667766542            111124444446


Q ss_pred             CCCEEEEc
Q 012720          199 GADYCLHA  206 (458)
Q Consensus       199 ~aDiVila  206 (458)
                      ++|+||.+
T Consensus        80 ~~d~vV~S   87 (524)
T 3hn7_A           80 APDLVVVG   87 (524)
T ss_dssp             CCSEEEEC
T ss_pred             CCCEEEEC
Confidence            79999985

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.01  E-value=0.054  Score=53.54  Aligned_cols=87  Identities=17%  Similarity=0.151  Sum_probs=62.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|++.++++++.+.+++.|...           + . .+.++..+++|+||-+
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~-----------v-~-~~~~~~~~~~D~vid~  241 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALSMGVKH-----------F-Y-TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHHTTCSE-----------E-E-SSGGGCCSCEEEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHhcCCCe-----------e-c-CCHHHHhcCCCEEEEC
Confidence            468999999999998888887788  89999999998888887766421           1 1 3444444479999999


Q ss_pred             Cccc-cHHHHHHhhhhcCCCCCeEEEe
Q 012720          207 MPVQ-FSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       207 Vp~~-~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +... .+...++-    ++++..++.+
T Consensus       242 ~g~~~~~~~~~~~----l~~~G~iv~~  264 (348)
T 3two_A          242 IPTHYDLKDYLKL----LTYNGDLALV  264 (348)
T ss_dssp             CCSCCCHHHHHTT----EEEEEEEEEC
T ss_pred             CCcHHHHHHHHHH----HhcCCEEEEE
Confidence            9976 55554433    3445555555

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=95.00  E-value=0.015  Score=57.93  Aligned_cols=91  Identities=14%  Similarity=0.206  Sum_probs=57.8

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEEE
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQ-LKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~-~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVi  204 (458)
                      +||+||| .|..|.-|.+.|.++.++ .++.++.-.+.       .|.... +.+    ..+.+. .+. +.+.++|+||
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~-------aG~~~~-~~~----~~~~~~~~~~-~~~~~~Dvvf   68 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARS-------QGRKLA-FRG----QEIEVEDAET-ADPSGLDIAL   68 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTT-------SSCEEE-ETT----EEEEEEETTT-SCCTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECccc-------CCCcee-ecC----CceEEEeCCH-HHhccCCEEE
Confidence            6899999 599999999999987421 24555543221       122111 111    112221 122 3457899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      +|+|.....+....+.+   .|..||+++.
T Consensus        69 ~a~~~~~s~~~a~~~~~---~G~~vID~Sa   95 (344)
T 3tz6_A           69 FSAGSAMSKVQAPRFAA---AGVTVIDNSS   95 (344)
T ss_dssp             ECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred             ECCChHHHHHHHHHHHh---CCCEEEECCC
Confidence            99998877777666543   5889999884

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.99  E-value=0.12  Score=51.18  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcC-CCCeEEEE-eC-CHHHHHHHHhh-cCCCccCCC-----CCC--C-CceEEe--CCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKK-SQLKVYML-MR-DPAVCQSINEK-HCNCRYFPE-----QKL--P-ENVIAT--TDA  193 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG-~~~~V~v~-~r-~~~~~e~l~~~-g~~~~~~~~-----~~l--~-~~i~a~--~~~  193 (458)
                      +||+|+|+|.+|..+.+.|.+++ .+.+|..+ ++ +.+....+.+. -...++...     ..+  . ..+.+.  .++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   80 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence            48999999999999999998872 13677755 44 34444333321 111111111     011  1 124443  255


Q ss_pred             Hhh-cC--CCCEEEEcCccccHHHHHHhhhhcCCCCC--eEEEec
Q 012720          194 KTA-LL--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (458)
Q Consensus       194 ~ea-~~--~aDiVilaVp~~~v~~vl~~i~~~l~~~~--ivV~~s  233 (458)
                      ++. .+  ++|+||.|+|.....+......   +.|.  +||+.+
T Consensus        81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~l---~aGakkvVId~~  122 (332)
T 1hdg_O           81 SKLPWKDLGVDFVIESTGVFRNREKAELHL---QAGAKKVIITAP  122 (332)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSC
T ss_pred             HHCcccccCCCEEEECCccchhHHHHHHHH---HcCCcEEEEeCC
Confidence            553 12  7999999999876665554433   3355  777765

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.99  E-value=0.033  Score=56.28  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=62.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH-------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP-------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~-------~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      .||.|+|+|+.|..+|..|...|  . +|+++|++-       +.+..+++.     +-.. .-+  .....+++|++++
T Consensus       189 ~kVVi~GAGaAG~~iA~ll~~~G--a~~I~v~D~~Gli~~~R~~~L~~~k~~-----fa~~-~~~--~~~~~~L~eav~~  258 (398)
T 2a9f_A          189 VSIVVNGGGSAGLSITRKLLAAG--ATKVTVVDKFGIINEQEAAQLAPHHLD-----IAKV-TNR--EFKSGTLEDALEG  258 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETTEECCTTCCCSCCC---C-----HHHH-HSC--TTCCCSCSHHHHT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcC--CCeEEEEECCCcccCCccccchHHHHH-----Hhhc-cCc--ccchhhHHHHhcc
Confidence            59999999999999999999999  6 999999862       101111000     0000 000  0012367889999


Q ss_pred             CCEEEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          200 ADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       200 aDiVilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|++|=+... -..+++++.    |.++.+|+.++|-.
T Consensus       259 ADV~IG~Sapgl~T~EmVk~----Ma~~pIIfalsNPt  292 (398)
T 2a9f_A          259 ADIFIGVSAPGVLKAEWISK----MAARPVIFAMANPI  292 (398)
T ss_dssp             TCSEEECCSTTCCCHHHHHT----SCSSCEEEECCSSS
T ss_pred             CCEEEecCCCCCCCHHHHHh----hCCCCEEEECCCCC
Confidence            9998876543 235555544    55789999999865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.95  E-value=0.063  Score=55.63  Aligned_cols=93  Identities=13%  Similarity=0.243  Sum_probs=61.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH---H-hhcCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA---K-TALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~---~-ea~~~aDi  202 (458)
                      .++|.|+|+|.+|..+|..|.+ +  ++|.+..+++++++.+.+.--+...+.|.        .+|.   + +-+.++|+
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-~--~~v~iIE~d~~r~~~la~~l~~~~Vi~GD--------~td~~~L~ee~i~~~D~  303 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-T--YSVKLIERNLQRAEKLSEELENTIVFCGD--------AADQELLTEENIDQVDV  303 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-T--SEEEEEESCHHHHHHHHHHCTTSEEEESC--------TTCHHHHHHTTGGGCSE
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-c--CceEEEecCHHHHHHHHHHCCCceEEecc--------ccchhhHhhcCchhhcE
Confidence            4789999999999999999854 5  89999999999999998753211111110        0122   1 23678999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEE
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFI  230 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV  230 (458)
                      ++.++..+..-=+..-+++.+....++.
T Consensus       304 ~ia~T~~De~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          304 FIALTNEDETNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEcccCcHHHHHHHHHHHHcCCccccc
Confidence            9999887654333333444555444443

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.91  E-value=0.0069  Score=59.18  Aligned_cols=38  Identities=18%  Similarity=0.300  Sum_probs=33.2

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |+.+|+|.|.|+ |.+|..++..|+++|  ++|++.+|+.+
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G--~~V~~~~r~~~   40 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHG--YDVVIADNLVN   40 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCCSS
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCC--CcEEEEecCCc
Confidence            445689999995 999999999999999  99999998753

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=94.88  E-value=0.02  Score=56.03  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ...+|.|||+|..|...|..|+++|  ++|+++++..
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~   37 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAE   37 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCC
Confidence            3458999999999999999999999  9999999874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.84  E-value=0.18  Score=50.86  Aligned_cols=100  Identities=22%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc--CCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--LGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~--~~aDiV  203 (458)
                      ..+|.|+|+|.+|...+..+...|  . .|++.++++++.+.+++.|....+....   .  .......+..  .++|+|
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~--~~~~~i~~~t~g~g~D~v  286 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAG--ASKVILSEPSEVRRNLAKELGADHVIDPTK---E--NFVEAVLDYTNGLGAKLF  286 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHTCSEEECTTT---S--CHHHHHHHHTTTCCCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHcCCCEEEcCCC---C--CHHHHHHHHhCCCCCCEE
Confidence            368999999999998887777778  7 8999999999888888776432110000   0  0000111211  268999


Q ss_pred             EEcCccc--cHHHHHHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQ--FSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~--~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |-|+...  ....++.-+...++++..++.+.
T Consensus       287 id~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          287 LEATGVPQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             EECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             EECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            9999865  33333333323335666666554

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.83  E-value=0.18  Score=49.84  Aligned_cols=97  Identities=9%  Similarity=0.075  Sum_probs=60.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~aD  201 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|++.++++++.+.+++.|....+....  ...  ......+..     ..+|
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~--~~~~i~~~~~~~~g~g~D  242 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGADVTLVVDP--AKE--EESSIIERIRSAIGDLPN  242 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEECCT--TTS--CHHHHHHHHHHHSSSCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhCCCEEEcCcc--ccc--HHHHHHHHhccccCCCCC
Confidence            468999999999998888877778  78999999999888887766431110000  000  000111111     3689


Q ss_pred             EEEEcCcccc-HHHHHHhhhhcCCCCCeEEEec
Q 012720          202 YCLHAMPVQF-SSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       202 iVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +||-++.... +..    ....++++..++.+.
T Consensus       243 ~vid~~g~~~~~~~----~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          243 VTIDCSGNEKCITI----GINITRTGGTLMLVG  271 (352)
T ss_dssp             EEEECSCCHHHHHH----HHHHSCTTCEEEECS
T ss_pred             EEEECCCCHHHHHH----HHHHHhcCCEEEEEe
Confidence            9999998642 333    334455555666554

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.83  E-value=0.026  Score=56.08  Aligned_cols=75  Identities=15%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHhhcCCCccCCCCCCCCc-eEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEKHCNCRYFPEQKLPEN-VIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~--e~l~~~g~~~~~~~~~~l~~~-i~a~~~~~ea~~~aDi  202 (458)
                      .|+|.|.|+ |.+|..++..|++.|  ++|++++|+++..  +.+.... ...+..     .. +.-.++..++++++|+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~l~~~~-~v~~v~-----~D~l~d~~~l~~~~~~~d~   76 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSLKGLIAEELQAIP-NVTLFQ-----GPLLNNVPLMDTLFEGAHL   76 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCSCSHHHHHHHTST-TEEEEE-----SCCTTCHHHHHHHHTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCCChhhHHHHhhcC-CcEEEE-----CCccCCHHHHHHHHhcCCE
Confidence            578999996 999999999999998  9999999987543  3333210 100000     00 0000124456789999


Q ss_pred             EEEcCcc
Q 012720          203 CLHAMPV  209 (458)
Q Consensus       203 VilaVp~  209 (458)
                      ||.+...
T Consensus        77 Vi~~a~~   83 (352)
T 1xgk_A           77 AFINTTS   83 (352)
T ss_dssp             EEECCCS
T ss_pred             EEEcCCC
Confidence            9987653

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=94.82  E-value=0.094  Score=54.24  Aligned_cols=90  Identities=17%  Similarity=0.223  Sum_probs=66.5

Q ss_pred             CCCeEEEECcc----hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          126 RTNKVVVLGGG----SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG----~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +.++|+|||++    .+|..+..+|.+.| ...|..++.....   +                .++.+..+++|+.+..|
T Consensus         7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g-~~~v~pVnP~~~~---i----------------~G~~~y~sl~~lp~~~D   66 (457)
T 2csu_A            7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEE---V----------------QGVKAYKSVKDIPDEID   66 (457)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSE---E----------------TTEECBSSTTSCSSCCS
T ss_pred             CCCeEEEECcCCCCCchHHHHHHHHHHcC-CCEEEEECCCCCe---E----------------CCEeccCCHHHcCCCCC
Confidence            35789999998    89999999999885 4788877765211   1                12455567777666899


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ++++++|...+.++++++... . =..+|.++.|+.
T Consensus        67 lavi~vp~~~~~~~v~e~~~~-G-i~~vv~~s~G~~  100 (457)
T 2csu_A           67 LAIIVVPKRFVKDTLIQCGEK-G-VKGVVIITAGFG  100 (457)
T ss_dssp             EEEECSCHHHHHHHHHHHHHH-T-CCEEEECCCSST
T ss_pred             EEEEecCHHHHHHHHHHHHHc-C-CCEEEEecCCCC
Confidence            999999999999999887653 1 124566777884

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=94.81  E-value=1.6  Score=41.94  Aligned_cols=165  Identities=15%  Similarity=0.163  Sum_probs=98.6

Q ss_pred             CceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEE
Q 012720          185 ENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALS  263 (458)
Q Consensus       185 ~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~  263 (458)
                      -++++++|-.|+++++|++|+.+|- ....++++.+.+++++|.+|-+.= ++.+-   .+...++. +++.  ++.+.+
T Consensus       127 aGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTC-Tipp~---~ly~~le~-l~R~--DvgIsS  199 (358)
T 2b0j_A          127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHAC-TIPTT---KFAKIFKD-LGRE--DLNITS  199 (358)
T ss_dssp             GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECS-SSCHH---HHHHHHHH-TTCT--TSEEEE
T ss_pred             cCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEeccc-CCCHH---HHHHHHHH-hCcc--cCCeec
Confidence            4678888888999999999999996 458889999999999999876543 45542   34445544 4542  334443


Q ss_pred             C-cccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEEcC-ChHHHHH--HHHHHHHHHHHHHHHhcc----c-C
Q 012720          264 G-PSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS-DVTGVEI--AGALKNVLAIAAGIVVGM----N-L  334 (458)
Q Consensus       264 g-P~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~~~-di~~~~~--~kalkNi~ai~~G~~~~~----k-l  334 (458)
                      - |.-.- ...|+.. .--+=.++++.+++.++-++.+...+..+ |+.+..-  +.++-- .. ..|+.+=.    + +
T Consensus       200 ~HPaaVP-gt~Gq~~-~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMgs~vTA-v~-~AGiL~Y~~~vtkIl  275 (358)
T 2b0j_A          200 YHPGCVP-EMKGQVY-IAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMCSAVTA-TV-YAGLLAYRDAVTKIL  275 (358)
T ss_dssp             CBCSSCT-TTCCCEE-EEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTTHHHHH-HH-HHHHHHHHHHHHTTS
T ss_pred             cCCCCCC-CCCCccc-cccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhHHHHHH-HH-HHHHHHHHHHHHHHh
Confidence            2 21111 1133321 22233578999999999998877766543 4333221  111111 11 12333211    2 3


Q ss_pred             CCc--HHHHHHHHHHHHHHHHHHHcCCC
Q 012720          335 GNN--SMAALVAQGCSEIRWLATKMGAK  360 (458)
Q Consensus       335 ~~n--~~~al~~~~l~E~~~la~a~Gi~  360 (458)
                      +..  .....+...+.-+..|.+..|++
T Consensus       276 gAP~~mie~q~~esL~tiasLve~~GI~  303 (358)
T 2b0j_A          276 GAPADFAQMMADEALTQIHNLMKEKGIA  303 (358)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            332  23355667777788888888886

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=94.76  E-value=0.062  Score=53.32  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEE-eC-CHHHHHHHHhhc-CCCccCCC-----CCC--C-CceEEe--CCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MR-DPAVCQSINEKH-CNCRYFPE-----QKL--P-ENVIAT--TDA  193 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~-~r-~~~~~e~l~~~g-~~~~~~~~-----~~l--~-~~i~a~--~~~  193 (458)
                      |+||+|+|+|.+|..+.+.|.++. +.+|... ++ +.+....+.+.. ...++...     ..+  . ..+.+.  .++
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~~-~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKNP-DIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP   79 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTCT-TEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECCCHHHHHHHHHHhCCC-CeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCCh
Confidence            469999999999999999998763 2566544 44 344444443211 11111000     001  1 123443  255


Q ss_pred             Hhh-cC--CCCEEEEcCccccHHHHHHhhhhcCCCCC--eEEEec
Q 012720          194 KTA-LL--GADYCLHAMPVQFSSSFLEGISDYVDPGL--PFISLS  233 (458)
Q Consensus       194 ~ea-~~--~aDiVilaVp~~~v~~vl~~i~~~l~~~~--ivV~~s  233 (458)
                      ++. .+  ++|+||.|++.....+......+   .|.  +||+.+
T Consensus        80 ~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~---~Gak~vVId~p  121 (334)
T 3cmc_O           80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLE---AGAKKVIISAP  121 (334)
T ss_dssp             GGCCTGGGTCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSC
T ss_pred             hhcCcccCccCEEEECCCchhhHHHHHHHHH---CCCCEEEEeCC
Confidence            543 12  79999999998766655544332   355  777765

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=94.69  E-value=0.11  Score=48.91  Aligned_cols=44  Identities=18%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      |+..++|.|.|+ |.+|.+++..|++.|  ++|++.+|+++..+.+.
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   48 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCK   48 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH
Confidence            334468999995 899999999999999  99999999987665543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.68  E-value=0.13  Score=47.87  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=36.6

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++++.|.|+ |.+|.++|..|++.|  ++|.+.+|+.+..+.+.+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G--~~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERG--HQVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            3567999996 899999999999999  999999999987766554

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.68  E-value=0.068  Score=52.81  Aligned_cols=92  Identities=16%  Similarity=0.096  Sum_probs=59.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------CC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------LG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------~~  199 (458)
                      ..+|.|+|+|.+|...+..+...|  . +|++.++++++.+.+++.|........         ..+..+.+      ..
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~---------~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKASG--AYPVIVSEPSDFRRELAKKVGADYVINPF---------EEDVVKEVMDITDGNG  236 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHHHHHHHTCSEEECTT---------TSCHHHHHHHHTTTSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCEEECCC---------CcCHHHHHHHHcCCCC
Confidence            468999999999999988888888  7 899999999888877776642110000         01222211      25


Q ss_pred             CCEEEEcCcc-ccHHHHHHhhhhcCCCCCeEEEec
Q 012720          200 ADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       200 aDiVilaVp~-~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|+||-++.. ..+...++-    ++++..++.+.
T Consensus       237 ~D~vid~~g~~~~~~~~~~~----l~~~G~iv~~g  267 (348)
T 2d8a_A          237 VDVFLEFSGAPKALEQGLQA----VTPAGRVSLLG  267 (348)
T ss_dssp             EEEEEECSCCHHHHHHHHHH----EEEEEEEEECC
T ss_pred             CCEEEECCCCHHHHHHHHHH----HhcCCEEEEEc
Confidence            8999999985 334444433    33444555543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.66  E-value=0.042  Score=57.40  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=47.8

Q ss_pred             hcCCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +.+++||.|||.|..|.+ +|..|.+.|  ++|+++|... ...+.+++.|....            .-.+++ .+.++|
T Consensus        19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~~~~~~l~~~gi~~~------------~g~~~~-~~~~~d   83 (494)
T 4hv4_A           19 MRRVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPNSVTQHLTALGAQIY------------FHHRPE-NVLDAS   83 (494)
T ss_dssp             ---CCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCCHHHHHHHHTTCEEE------------SSCCGG-GGTTCS
T ss_pred             hccCCEEEEEEEcHhhHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHHCCCEEE------------CCCCHH-HcCCCC
Confidence            445689999999999995 899999999  9999999754 34556766654211            112333 357899


Q ss_pred             EEEEc
Q 012720          202 YCLHA  206 (458)
Q Consensus       202 iVila  206 (458)
                      +||++
T Consensus        84 ~vV~S   88 (494)
T 4hv4_A           84 VVVVS   88 (494)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99986

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.66  E-value=0.19  Score=47.11  Aligned_cols=87  Identities=13%  Similarity=0.104  Sum_probs=56.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+.-.                    +.....+.++.+
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~~~~~   69 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYG--ATVILLGRNEEKLRQVASHIN--------------------EETGRQPQWFIL   69 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--------------------HHHSCCCEEEEC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH--------------------hhcCCCceEEEE
Confidence            467888986 899999999999999  999999999887666544210                    000012222222


Q ss_pred             cC--c-cccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AM--P-VQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aV--p-~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      -+  . ...++++++.+.....+=.++|+.. |+
T Consensus        70 D~~~~~~~~~~~~~~~~~~~~g~id~lv~nA-g~  102 (252)
T 3f1l_A           70 DLLTCTSENCQQLAQRIAVNYPRLDGVLHNA-GL  102 (252)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHCSCCSEEEECC-CC
T ss_pred             ecccCCHHHHHHHHHHHHHhCCCCCEEEECC-cc
Confidence            22  1 3456677777766555545777766 54

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.66  E-value=0.023  Score=58.66  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |++|.|||+|.-|..-|..|+++|  ++|+|+.++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~   34 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRD   34 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCC
Confidence            578999999999999999999999  9999998875

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.66  E-value=0.015  Score=55.21  Aligned_cols=71  Identities=17%  Similarity=0.298  Sum_probs=48.3

Q ss_pred             eEEEECc-chHHHHHHHHHHhc--CCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          129 KVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       129 kI~IIGa-G~mG~~iA~~La~a--G~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||.|.|+ |.+|..++..|.+.  |  ++|++++|+++..+.+...+.... ..+      +.-.++..++++++|+||.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~D------~~d~~~~~~~~~~~d~vi~   71 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPA--SQIVAIVRNPAKAQALAAQGITVR-QAD------YGDEAALTSALQGVEKLLL   71 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCG--GGEEEEESCTTTCHHHHHTTCEEE-ECC------TTCHHHHHHHTTTCSEEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCC--ceEEEEEcChHhhhhhhcCCCeEE-EcC------CCCHHHHHHHHhCCCEEEE
Confidence            5899997 99999999999998  8  999999998776555544322100 000      0001134456788999998


Q ss_pred             cCc
Q 012720          206 AMP  208 (458)
Q Consensus       206 aVp  208 (458)
                      +..
T Consensus        72 ~a~   74 (286)
T 2zcu_A           72 ISS   74 (286)
T ss_dssp             CC-
T ss_pred             eCC
Confidence            865

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.61  E-value=0.0099  Score=59.44  Aligned_cols=73  Identities=10%  Similarity=0.061  Sum_probs=47.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ||+|.|.|+ |.+|..++..|++.|  ++|++++|+..........+.  .+..     ..+.-..+.+++++++|+||.
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~v--~~~~-----~Dl~d~~~~~~~~~~~d~Vih   99 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEG--HYVIASDWKKNEHMTEDMFCD--EFHL-----VDLRVMENCLKVTEGVDHVFN   99 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCCSSSCGGGTCS--EEEE-----CCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEECCCccchhhccCCc--eEEE-----CCCCCHHHHHHHhCCCCEEEE
Confidence            679999997 999999999999999  999999998643211111010  0000     000000123456778999999


Q ss_pred             cCc
Q 012720          206 AMP  208 (458)
Q Consensus       206 aVp  208 (458)
                      +..
T Consensus       100 ~A~  102 (379)
T 2c5a_A          100 LAA  102 (379)
T ss_dssp             CCC
T ss_pred             Cce
Confidence            864

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=94.60  E-value=0.16  Score=47.14  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=56.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|.|+ |.+|..+|..|++.|  ++|++.+|+++..+.+.+.-                     .+  ...++.++
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~~---------------------~~--~~~~~~~~   59 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKG--ATVVGTATSQASAEKFENSM---------------------KE--KGFKARGL   59 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHH---------------------HH--TTCCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHH---------------------Hh--cCCceEEE
Confidence            467889995 899999999999999  99999999998776655421                     11  01222222


Q ss_pred             cCc---cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMP---VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp---~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+-   ...++.+++++.....+=.+||.+. |+.
T Consensus        60 ~~D~~~~~~~~~~~~~~~~~~~~id~li~~A-g~~   93 (247)
T 3lyl_A           60 VLNISDIESIQNFFAEIKAENLAIDILVNNA-GIT   93 (247)
T ss_dssp             ECCTTCHHHHHHHHHHHHHTTCCCSEEEECC-CCC
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECC-CCC
Confidence            221   2456777777766555445777766 554

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.55  E-value=0.17  Score=50.00  Aligned_cols=91  Identities=10%  Similarity=0.058  Sum_probs=59.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe----CCHHhhc----
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT----TDAKTAL----  197 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~----~~~~ea~----  197 (458)
                      ..+|.|+|+|.+|...+..+...|  . +|++.++++++.+.+++.|....+          ...    .+..+.+    
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi----------~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADLVL----------QISKESPQEIARKVEGQL  239 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSEEE----------ECSSCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHhCCCEEE----------cCcccccchHHHHHHHHh
Confidence            468999999999998887777777  7 899999999888887776642110          000    0111111    


Q ss_pred             -CCCCEEEEcCccc-cHHHHHHhhhhcCCCCCeEEEec
Q 012720          198 -LGADYCLHAMPVQ-FSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       198 -~~aDiVilaVp~~-~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                       .++|+||-++... .+..    ....++++..++.+.
T Consensus       240 ~~g~D~vid~~g~~~~~~~----~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          240 GCKPEVTIECTGAEASIQA----GIYATRSGGTLVLVG  273 (356)
T ss_dssp             TSCCSEEEECSCCHHHHHH----HHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCCChHHHHH----HHHHhcCCCEEEEEe
Confidence             4689999999754 2333    334455565666553

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=94.53  E-value=0.1  Score=48.88  Aligned_cols=42  Identities=21%  Similarity=0.233  Sum_probs=35.7

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHH
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      ++++|.|.|+ |.+|..++..|++ .|  ++|++.+|+.+..+.+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g--~~V~~~~r~~~~~~~~~   46 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAV   46 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcC--CeEEEEeCChHHHHHHH
Confidence            4578999985 9999999999999 89  99999999987665543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.53  E-value=0.021  Score=56.14  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=49.3

Q ss_pred             cCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH----HHHHHHHhh-----cCCCccCCCCCCCCceEEeCCHH
Q 012720          125 ERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP----AVCQSINEK-----HCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       125 ~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~----~~~e~l~~~-----g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      +.+|+|.|.|+ |.+|..++..|++.|  ++|++++|+.    +..+.+.+.     +....+..+     .+.-..+.+
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----Dl~d~~~~~   97 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG-----DIRNLDDCN   97 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEEC-----CTTSHHHHH
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEEC-----CCCCHHHHH
Confidence            34689999998 999999999999999  9999999864    234443321     001000000     000001234


Q ss_pred             hhcCCCCEEEEcCc
Q 012720          195 TALLGADYCLHAMP  208 (458)
Q Consensus       195 ea~~~aDiVilaVp  208 (458)
                      ++++++|+||.+..
T Consensus        98 ~~~~~~d~vih~A~  111 (352)
T 1sb8_A           98 NACAGVDYVLHQAA  111 (352)
T ss_dssp             HHHTTCSEEEECCS
T ss_pred             HHhcCCCEEEECCc
Confidence            56778999999875

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.52  E-value=0.093  Score=47.13  Aligned_cols=44  Identities=14%  Similarity=0.186  Sum_probs=37.8

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g  172 (458)
                      .++|.|+| +|.+|..++..+...|  .+|++.++++++.+.+++.|
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~~g   83 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRLG   83 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTTC
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHcC
Confidence            46899999 6999999999999889  89999999998877666544

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.48  E-value=0.086  Score=55.73  Aligned_cols=43  Identities=5%  Similarity=0.189  Sum_probs=40.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~  171 (458)
                      .++|.|+|+|.+|..++..|.+.|  ++|++++.+++.++.+.+.
T Consensus       127 ~~hviI~G~g~~g~~la~~L~~~~--~~vvvid~~~~~~~~~~~~  169 (565)
T 4gx0_A          127 RGHILIFGIDPITRTLIRKLESRN--HLFVVVTDNYDQALHLEEQ  169 (565)
T ss_dssp             CSCEEEESCCHHHHHHHHHTTTTT--CCEEEEESCHHHHHHHHHS
T ss_pred             CCeEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHh
Confidence            568999999999999999999998  9999999999999888876

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=94.48  E-value=0.019  Score=56.20  Aligned_cols=68  Identities=18%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +.|+|.|.|+ |.+|..++..|++.|  ++|++++|+...      .+.  .+..     ..+.-..+..++++++|+||
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~------~~~--~~~~-----~Dl~d~~~~~~~~~~~d~vi   82 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG------TGG--EEVV-----GSLEDGQALSDAIMGVSAVL   82 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS------SCC--SEEE-----SCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC------CCc--cEEe-----cCcCCHHHHHHHHhCCCEEE
Confidence            3689999997 999999999999999  999999998643      111  1100     00110113445678999999


Q ss_pred             EcCc
Q 012720          205 HAMP  208 (458)
Q Consensus       205 laVp  208 (458)
                      .+..
T Consensus        83 h~A~   86 (347)
T 4id9_A           83 HLGA   86 (347)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8764

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=94.47  E-value=0.014  Score=57.05  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhc--CCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANK--KSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~a--G~~~~V~v~~r~~  162 (458)
                      .||+|.|.|+ |.+|..++..|++.  |  ++|++++|+.
T Consensus         3 ~m~~vlVTGatG~iG~~l~~~L~~~~~g--~~V~~~~r~~   40 (348)
T 1oc2_A            3 QFKNIIVTGGAGFIGSNFVHYVYNNHPD--VHVTVLDKLT   40 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTT--CEEEEEECCC
T ss_pred             cCcEEEEeCCccHHHHHHHHHHHHhCCC--CEEEEEeCCC
Confidence            3689999995 99999999999998  6  9999999864

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.47  E-value=0.11  Score=49.65  Aligned_cols=42  Identities=21%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   75 (281)
T 4dry_A           33 GRIALVTGGGTGVGRGIAQALSAEG--YSVVITGRRPDVLDAAAG   75 (281)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467888885 889999999999999  999999999987666544

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.45  E-value=0.19  Score=47.64  Aligned_cols=42  Identities=17%  Similarity=0.136  Sum_probs=35.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.+
T Consensus        31 ~k~vlITGasggIG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~   73 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAA   73 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEEcCHHHHHHHHH
Confidence            468999985 899999999999999  999999999876665543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.45  E-value=0.18  Score=47.49  Aligned_cols=82  Identities=12%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+.+..+.+.+.                     ..+  ...++.++
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~---------------------~~~--~~~~~~~~   65 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQG--ADLVLAARTVERLEDVAKQ---------------------VTD--TGRRALSV   65 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence            467889996 789999999999999  9999999998877665542                     111  11223333


Q ss_pred             cCc---cccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMP---VQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp---~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .+-   ...++++++++.....+=.++|+..
T Consensus        66 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           66 GTDITDDAQVAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            222   2456777777766655555777766

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=94.42  E-value=0.032  Score=56.23  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCe-EEEEeCCH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLK-VYMLMRDP  162 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~-V~v~~r~~  162 (458)
                      |+...+|.|||+|..|.++|..|+++|  .+ |+++++.+
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~   38 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSS   38 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCC
Confidence            444578999999999999999999999  89 99999864

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.41  E-value=0.17  Score=47.22  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   54 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAG--ARVIIADLDEAMATKAV   54 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            467999985 999999999999999  99999999987655443

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.38  E-value=0.22  Score=46.87  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+|+++..+.+.
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   54 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASK   54 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            467888885 899999999999999  99999999987766554

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=94.37  E-value=0.12  Score=48.84  Aligned_cols=45  Identities=20%  Similarity=0.298  Sum_probs=35.6

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHh
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINE  170 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~-~r~~~~~e~l~~  170 (458)
                      |+..+++.|.|+ |.+|.++|..|++.|  ++|.+. +|+.+..+.+.+
T Consensus         1 M~~~k~vlVTGas~gIG~aia~~l~~~G--~~vv~~~~r~~~~~~~~~~   47 (258)
T 3oid_A            1 MEQNKCALVTGSSRGVGKAAAIRLAENG--YNIVINYARSKKAALETAE   47 (258)
T ss_dssp             --CCCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHH
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHH
Confidence            444567888885 899999999999999  999985 898877666544

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.37  E-value=0.037  Score=53.31  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .|+|.|.|+ |.+|..++..|++.|  ++|++++|+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~   37 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN--WHAVGCGFRRA   37 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEC----
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC--CeEEEEccCCC
Confidence            478999997 999999999999999  99999998764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.36  E-value=0.034  Score=49.09  Aligned_cols=33  Identities=36%  Similarity=0.478  Sum_probs=31.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+|.|||+|..|..+|..|++.|  .+|+++++.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g--~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAG--LKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            58999999999999999999999  9999999875

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.35  E-value=0.021  Score=59.87  Aligned_cols=63  Identities=25%  Similarity=0.265  Sum_probs=46.1

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +|||.|.| .|.+|..++..|.+.|  ++|++++|+....+.     .    ..+  +      .+...+++.++|+||.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G--~~V~~l~R~~~~~~~-----v----~~d--~------~~~~~~~l~~~D~Vih  207 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGG--HEVIQLVRKEPKPGK-----R----FWD--P------LNPASDLLDGADVLVH  207 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESSSCCTTC-----E----ECC--T------TSCCTTTTTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCccc-----e----eec--c------cchhHHhcCCCCEEEE
Confidence            68999999 5999999999999999  999999998653210     0    000  0      0123456788999998


Q ss_pred             cCc
Q 012720          206 AMP  208 (458)
Q Consensus       206 aVp  208 (458)
                      +..
T Consensus       208 ~A~  210 (516)
T 3oh8_A          208 LAG  210 (516)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.30  E-value=0.035  Score=54.97  Aligned_cols=34  Identities=26%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..+|.|||+|..|...|..|+++|  ++|+++++..
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~~   38 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKRF   38 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            458999999999999999999999  9999999863

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.28  E-value=0.37  Score=49.67  Aligned_cols=72  Identities=10%  Similarity=0.034  Sum_probs=48.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|.|+|+|..|..-+..|.++|  .+|++++.+. +..+.+.+.+. ..+.         .-.-+.++ +.++|+||.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~g--a~V~vi~~~~~~~~~~l~~~~~-i~~~---------~~~~~~~~-l~~~~lVi~   78 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWANEGM-LTLV---------EGPFDETL-LDSCWLAIA   78 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHHTTTS-CEEE---------ESSCCGGG-GTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCc--CEEEEEcCCCCHHHHHHHhcCC-EEEE---------ECCCCccc-cCCccEEEE
Confidence            579999999999999999999999  9999999753 23344433221 0000         00012233 578999999


Q ss_pred             cCcccc
Q 012720          206 AMPVQF  211 (458)
Q Consensus       206 aVp~~~  211 (458)
                      ++....
T Consensus        79 at~~~~   84 (457)
T 1pjq_A           79 ATDDDT   84 (457)
T ss_dssp             CCSCHH
T ss_pred             cCCCHH
Confidence            887653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.27  E-value=0.15  Score=47.61  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=36.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|..+|..|++.|  ++|++.+|+.+..+.+.+
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~   51 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREG--AAVVVADINAEAAEAVAK   51 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence            467889996 899999999999999  999999999987776654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.26  E-value=0.14  Score=51.00  Aligned_cols=95  Identities=14%  Similarity=0.137  Sum_probs=57.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH-------------------HHHHHHHhh--cCCCccCCCCCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP-------------------AVCQSINEK--HCNCRYFPEQKLPE  185 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~-------------------~~~e~l~~~--g~~~~~~~~~~l~~  185 (458)
                      ..+|.|||+|..|+.+|..|+.+|. -.++++|.+.                   .+++.+.+.  .++    |..    
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gv-g~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln----p~v----  106 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGV-KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN----PMV----  106 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC----TTS----
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC----CCe----
Confidence            5799999999999999999999994 4899997542                   122222221  011    111    


Q ss_pred             ceEEe-----CCHHhhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          186 NVIAT-----TDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       186 ~i~a~-----~~~~ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      .+.+.     ...++.++++|+||.|+-+......+.+.....  +..+|+.
T Consensus       107 ~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~--~ip~i~~  156 (346)
T 1y8q_A          107 DVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKN--SIKFFTG  156 (346)
T ss_dssp             EEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHT--TCEEEEE
T ss_pred             EEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence            11211     123456788999999987766555555543322  3455543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=94.25  E-value=0.16  Score=47.04  Aligned_cols=41  Identities=12%  Similarity=0.184  Sum_probs=35.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   52 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVV   52 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            478999996 999999999999999  99999999987665544

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=94.24  E-value=0.04  Score=55.38  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=31.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|||+|..|++.|..|+++|  ++|+++++.+
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~E~~~   56 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSG--IDCDVYEAVK   56 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            478999999999999999999999  9999999875

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=94.22  E-value=0.079  Score=55.72  Aligned_cols=43  Identities=30%  Similarity=0.376  Sum_probs=36.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~  171 (458)
                      .+++.|+|+|.+|.+++..|++.|  .+|++++|+.++++.+.+.
T Consensus       364 ~k~vlV~GaGGig~aia~~L~~~G--~~V~i~~R~~~~a~~la~~  406 (523)
T 2o7s_A          364 SKTVVVIGAGGAGKALAYGAKEKG--AKVVIANRTYERALELAEA  406 (523)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHHC--C-CEEEESSHHHHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH
Confidence            457999999999999999999999  8999999999888877653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.18  E-value=0.24  Score=47.05  Aligned_cols=41  Identities=17%  Similarity=0.331  Sum_probs=35.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   63 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTL   63 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            367888885 899999999999999  99999999987665543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=94.17  E-value=0.11  Score=49.46  Aligned_cols=42  Identities=21%  Similarity=0.295  Sum_probs=35.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   68 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAG--ARILINGTDPSRVAQTVQ   68 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEECCSCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            457888885 899999999999999  999999999887666544

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.16  E-value=0.15  Score=50.89  Aligned_cols=94  Identities=12%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a  200 (458)
                      ..+|.|+|+|.+|...+..+...|  . .|++.++++++.+.+++.|....+... ..      ..+..+.+     ..+
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~-~~------~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIELGATECLNPK-DY------DKPIYEVICEKTNGGV  262 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHTTCSEEECGG-GC------SSCHHHHHHHHTTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHHcCCcEEEecc-cc------cchHHHHHHHHhCCCC
Confidence            368999999999998888777777  6 799999999888887776642110000 00      01222211     268


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCC-CeEEEe
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISL  232 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~-~ivV~~  232 (458)
                      |+||-++....   .+......++++ ..++.+
T Consensus       263 Dvvid~~g~~~---~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          263 DYAVECAGRIE---TMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SEEEECSCCHH---HHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCCHH---HHHHHHHHHhcCCCEEEEE
Confidence            99999987532   223333445555 555544

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.14  E-value=0.26  Score=45.63  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|..+|..|++.|  ++|.+.+|+++..+.+.+
T Consensus        14 ~k~vlITGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   56 (247)
T 3i1j_A           14 GRVILVTGAARGIGAAAARAYAAHG--ASVVLLGRTEASLAEVSD   56 (247)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEecCHHHHHHHHH
Confidence            467999996 899999999999999  999999999887766544

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.14  E-value=0.29  Score=46.10  Aligned_cols=42  Identities=21%  Similarity=0.240  Sum_probs=35.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+.+..+.+.+
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   50 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAG--AAVAFCARDGERLRAAES   50 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            457888885 899999999999999  999999999887666544

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.13  E-value=0.2  Score=46.79  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=35.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   49 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEG--AAVAIAARRVEKLRALGD   49 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467889985 899999999999999  999999999877665543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=94.12  E-value=0.042  Score=55.15  Aligned_cols=34  Identities=29%  Similarity=0.555  Sum_probs=31.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|||+|..|..+|..|+++|  ++|+++++.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNG--IDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--CEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            358999999999999999999999  9999999875

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=94.12  E-value=0.032  Score=54.64  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHh---cCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN---KKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~---aG~~~~V~v~~r~~  162 (458)
                      |++|+|||+|..|.+.|..|++   +|  ++|+++++.+
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~   37 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKAD   37 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCC
Confidence            3589999999999999999999   88  9999998763

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=94.12  E-value=0.043  Score=55.25  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .|+|+|||+|..|...|..|+++|  ++|++++++.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~   36 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRD   36 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence            479999999999999999999998  9999999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.07  E-value=0.17  Score=50.51  Aligned_cols=95  Identities=14%  Similarity=0.125  Sum_probs=58.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a  200 (458)
                      ..+|.|+|+|.+|...+..+...|  . .|++.++++++.+.+++.|....+... ..      ..+..+.+     ..+
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~-~~------~~~~~~~v~~~~~~g~  266 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKALGATDCLNPR-EL------DKPVQDVITELTAGGV  266 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCSEEECGG-GC------SSCHHHHHHHHHTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHhCCcEEEccc-cc------cchHHHHHHHHhCCCc
Confidence            368999999999998888777777  7 799999999888877776642110000 00      01222211     268


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCC-CeEEEec
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISLS  233 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~-~ivV~~s  233 (458)
                      |+||-++....   .+......++++ ..++.+.
T Consensus       267 Dvvid~~G~~~---~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          267 DYSLDCAGTAQ---TLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             SEEEESSCCHH---HHHHHHHTBCTTTCEEEECC
T ss_pred             cEEEECCCCHH---HHHHHHHHhhcCCCEEEEEC
Confidence            99999987532   222333444555 4555443

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.07  E-value=0.13  Score=48.45  Aligned_cols=42  Identities=21%  Similarity=0.342  Sum_probs=36.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   48 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEG--ARVVITGRTKEKLEEAKL   48 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888886 899999999999999  999999999987776654

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=94.07  E-value=0.17  Score=47.13  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=34.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeC-CHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR-DPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r-~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+| +++..+.+.
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   46 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQG--ANVVVNYAGNEQKANEVV   46 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence            467888885 899999999999999  99999999 776655543

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.04  E-value=0.061  Score=51.86  Aligned_cols=34  Identities=18%  Similarity=0.393  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|||+|.+|..-+..|.+.|  ++|++++.+.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~G--a~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCC
Confidence            579999999999999999999999  9999998654

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=94.04  E-value=0.3  Score=45.60  Aligned_cols=120  Identities=11%  Similarity=0.156  Sum_probs=71.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .||..|+|+ |.||..++......+  +++. .+++...                           ++    +.++|++|
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~~~~~~--~elv~~id~~~~---------------------------~~----l~~~DVvI   58 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKVFSEKG--HELVLKVDVNGV---------------------------EE----LDSPDVVI   58 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEETTEE---------------------------EE----CSCCSEEE
T ss_pred             cceeEEEEecCHHHHHHHHHHhCCC--CEEEEEEcCCCc---------------------------cc----ccCCCEEE
Confidence            589999998 999999987665556  7765 4555321                           01    23689999


Q ss_pred             -EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          205 -HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       205 -laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                       ++.|. .+.+.++....   .+..+|..+.|+..+..    +.+.+. ..   ...++..|++...+..          
T Consensus        59 DFT~P~-a~~~~~~~~~~---~g~~~ViGTTG~~~~~~----~~l~~~-a~---~~~vv~apNfSlGvnl----------  116 (228)
T 1vm6_A           59 DFSSPE-ALPKTVDLCKK---YRAGLVLGTTALKEEHL----QMLREL-SK---EVPVVQAYNFSIGINV----------  116 (228)
T ss_dssp             ECSCGG-GHHHHHHHHHH---HTCEEEECCCSCCHHHH----HHHHHH-TT---TSEEEECSCCCHHHHH----------
T ss_pred             ECCCHH-HHHHHHHHHHH---cCCCEEEeCCCCCHHHH----HHHHHH-Hh---hCCEEEeccccHHHHH----------
Confidence             55554 44444444433   35667777778886532    233332 22   1467888887653210          


Q ss_pred             CCHHHHHHHHHHHhcCCCeEE
Q 012720          284 KDRKLANAVQQLLASKHLRIS  304 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~  304 (458)
                       -...++.+.+.|.  ++.+.
T Consensus       117 -l~~l~~~aA~~l~--~ydiE  134 (228)
T 1vm6_A          117 -LKRFLSELVKVLE--DWDVE  134 (228)
T ss_dssp             -HHHHHHHHHHHTT--TSEEE
T ss_pred             -HHHHHHHHHHhcC--CCCEE
Confidence             1345566777773  44443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=94.04  E-value=0.2  Score=47.62  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   70 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRG--AMVIGTATTEAGAEGIGA   70 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            356777785 899999999999999  999999999887766544

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.02  E-value=0.07  Score=51.88  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ||+|.|.| .|.+|..++..|++.|  ++|++++|.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~   34 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQG--IDLIVFDNL   34 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCC--CEEEEEeCC
Confidence            47899999 5999999999999999  999999874

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.02  E-value=0.041  Score=55.53  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=31.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |+|.|||+|..|.+.|..|+++|  ++|++++++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            68999999999999999999999  9999999864

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=93.98  E-value=0.27  Score=45.93  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=34.5

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      +++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   43 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVA   43 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            57888885 899999999999999  99999999987666554

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=93.96  E-value=0.045  Score=56.73  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      .+|.|||+|.-|...|..|++.|  ++|+++++.
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~   57 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKR   57 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence            57999999999999999999999  999999975

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.93  E-value=0.18  Score=48.12  Aligned_cols=42  Identities=17%  Similarity=0.277  Sum_probs=35.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus        32 gk~~lVTGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   74 (276)
T 3r1i_A           32 GKRALITGASTGIGKKVALAYAEAG--AQVAVAARHSDALQVVAD   74 (276)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESSGGGGHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467889995 899999999999999  999999999876665543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.92  E-value=0.042  Score=54.82  Aligned_cols=34  Identities=41%  Similarity=0.602  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ...|.|||+|..|.+.|..|+++|  ++|+++++..
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~   37 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERG--HRVLVLERHT   37 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence            357999999999999999999999  9999999864

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=93.88  E-value=0.033  Score=54.18  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             CeEEEECc-chHHHHHHHHHHhc-CCCCeEEEEeCCHHHH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANK-KSQLKVYMLMRDPAVC  165 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~a-G~~~~V~v~~r~~~~~  165 (458)
                      |||.|.|+ |.+|..++..|++. |  ++|++++|+.+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~   38 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDH--YEVYGLDIGSDAI   38 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT--CEEEEEESCCGGG
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCC--CEEEEEeCCcchH
Confidence            68999997 99999999999998 7  9999999987643

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=93.84  E-value=0.12  Score=49.17  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=35.4

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G--~~V~~~~r~~~~~~~~~~   63 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAG--WSLVLTGRREERLQALAG   63 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            67888885 899999999999999  999999999887666544

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=93.83  E-value=0.022  Score=57.70  Aligned_cols=80  Identities=10%  Similarity=0.116  Sum_probs=56.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~---~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ..||.|||+ |..|..-+..+..-|  .   +|++||++...      .|..                  .++ +.++|+
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lG--a~~~~V~v~D~~~~~------~g~~------------------~~~-i~~aDi  266 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVG--IPDANILKWDIKETS------RGGP------------------FDE-IPQADI  266 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTT--CCGGGEEEECHHHHT------TCSC------------------CTH-HHHSSE
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCC--CCcCceEEeeccccc------cCCc------------------hhh-HhhCCE
Confidence            458999999 999999999998888  7   89999987621      1210                  123 568999


Q ss_pred             EEEcCcccc-HHHHH-HhhhhcC-CCCCeEEEec
Q 012720          203 CLHAMPVQF-SSSFL-EGISDYV-DPGLPFISLS  233 (458)
Q Consensus       203 VilaVp~~~-v~~vl-~~i~~~l-~~~~ivV~~s  233 (458)
                      ||-|+.... ...++ ++....+ +++.+||+++
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            999998411 11111 2333456 8899999986

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.83  E-value=0.19  Score=50.08  Aligned_cols=93  Identities=10%  Similarity=0.069  Sum_probs=57.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a  200 (458)
                      ..+|.|+|+|.+|...+..+...|  . .|++.++++++.+.+++.|....+... ..      ..+..+.+     ..+
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~-~~------~~~~~~~~~~~~~~g~  262 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDINKDKFAKAKEVGATECVNPQ-DY------KKPIQEVLTEMSNGGV  262 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCSEEECGG-GC------SSCHHHHHHHHTTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHhCCceEeccc-cc------chhHHHHHHHHhCCCC
Confidence            368999999999998888877777  7 799999999888877766542110000 00      01222211     258


Q ss_pred             CEEEEcCccc-cHHHHHHhhhhcCCCC-CeEEEe
Q 012720          201 DYCLHAMPVQ-FSSSFLEGISDYVDPG-LPFISL  232 (458)
Q Consensus       201 DiVilaVp~~-~v~~vl~~i~~~l~~~-~ivV~~  232 (458)
                      |+||-++... .+...    ...++++ ..++.+
T Consensus       263 D~vid~~g~~~~~~~~----~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          263 DFSFEVIGRLDTMVTA----LSCCQEAYGVSVIV  292 (374)
T ss_dssp             SEEEECSCCHHHHHHH----HHHBCTTTCEEEEC
T ss_pred             cEEEECCCCHHHHHHH----HHHhhcCCcEEEEe
Confidence            9999998753 33333    3344455 455544

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.82  E-value=0.26  Score=46.25  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=35.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   50 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLG--ASVYTCSRNQKELNDCL   50 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            467889985 899999999999999  99999999987665543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.81  E-value=0.17  Score=50.27  Aligned_cols=82  Identities=15%  Similarity=0.001  Sum_probs=54.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh----c--CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA----L--LGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea----~--~~a  200 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|++.++++++.+.+++.|....+-..         ..+..+.    .  .++
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~vi~~~---------~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFALGADHGINRL---------EEDWVERVYALTGDRGA  258 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHHTTCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHHcCCCEEEcCC---------cccHHHHHHHHhCCCCc
Confidence            368999999999999888888888  8999999999888887776642110000         0121111    1  257


Q ss_pred             CEEEEcCccccHHHHHHhh
Q 012720          201 DYCLHAMPVQFSSSFLEGI  219 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i  219 (458)
                      |+||-|+....+...++.+
T Consensus       259 D~vid~~g~~~~~~~~~~l  277 (363)
T 3uog_A          259 DHILEIAGGAGLGQSLKAV  277 (363)
T ss_dssp             EEEEEETTSSCHHHHHHHE
T ss_pred             eEEEECCChHHHHHHHHHh
Confidence            8888888755555554443

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.81  E-value=0.2  Score=46.98  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+.+..+.+.+
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   54 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAG--ASVVVTDLKSEGAEAVAA   54 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467888885 899999999999999  999999999887766544

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.79  E-value=0.054  Score=55.24  Aligned_cols=34  Identities=12%  Similarity=0.338  Sum_probs=31.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +++|.|||+|..|..+|..|+++|  ++|+++++..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence            358999999999999999999999  9999999765

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=93.79  E-value=0.11  Score=53.82  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=47.6

Q ss_pred             hcCCCeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      |.+.+||.|||.|..|.+ +|..|.+.|  ++|+++|.... ..+.+.+.|...            ..-.+.+ .+.++|
T Consensus        15 ~~~~~~i~viG~G~sG~s~~A~~l~~~G--~~V~~~D~~~~~~~~~l~~~gi~~------------~~g~~~~-~~~~a~   79 (475)
T 1p3d_A           15 MRRVQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIADGVVTQRLAQAGAKI------------YIGHAEE-HIEGAS   79 (475)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESCCSHHHHHHHHTTCEE------------EESCCGG-GGTTCS
T ss_pred             cccCCEEEEEeecHHHHHHHHHHHHhCC--CEEEEECCCCCHHHHHHHhCCCEE------------ECCCCHH-HcCCCC
Confidence            344679999999999997 999999999  99999997643 344565554321            1111332 356789


Q ss_pred             EEEEc
Q 012720          202 YCLHA  206 (458)
Q Consensus       202 iVila  206 (458)
                      +||+.
T Consensus        80 ~vv~s   84 (475)
T 1p3d_A           80 VVVVS   84 (475)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88885

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.75  E-value=0.12  Score=50.81  Aligned_cols=91  Identities=20%  Similarity=0.070  Sum_probs=58.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc----CCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL----LGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~----~~aDi  202 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|+..++++++.+.+++.|........         ..+..+.+    .+.|+
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~lGa~~~i~~~---------~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          167 GQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARRLGAEVAVNAR---------DTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEETT---------TSCHHHHHHHHHSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHcCCCEEEeCC---------CcCHHHHHHHhCCCCCE
Confidence            468999999999999888888788  8999999999998888776642110000         01222222    36799


Q ss_pred             EEEcCccc-cHHHHHHhhhhcCCCCCeEEEe
Q 012720          203 CLHAMPVQ-FSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       203 VilaVp~~-~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      ||.++... .+...++    .++++..++.+
T Consensus       236 vid~~g~~~~~~~~~~----~l~~~G~iv~~  262 (340)
T 3s2e_A          236 VLVTAVSPKAFSQAIG----MVRRGGTIALN  262 (340)
T ss_dssp             EEESSCCHHHHHHHHH----HEEEEEEEEEC
T ss_pred             EEEeCCCHHHHHHHHH----HhccCCEEEEe
Confidence            99888643 3333333    33444455544

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.75  E-value=0.21  Score=49.70  Aligned_cols=94  Identities=13%  Similarity=0.102  Sum_probs=58.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a  200 (458)
                      ..+|.|+|+|.+|...+..+...|  . .|+..++++++.+.+++.|....+... ..      ..+..+.+     ..+
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~-~~------~~~~~~~~~~~~~~g~  263 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSAG--AKRIIAVDLNPDKFEKAKVFGATDFVNPN-DH------SEPISQVLSKMTNGGV  263 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHHTTCCEEECGG-GC------SSCHHHHHHHHHTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHhCCceEEecc-cc------chhHHHHHHHHhCCCC
Confidence            368999999999998888777777  7 799999999888877776642110000 00      01222222     258


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCC-CeEEEe
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISL  232 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~-~ivV~~  232 (458)
                      |+||-++....   .+......++++ -.++.+
T Consensus       264 D~vid~~g~~~---~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          264 DFSLECVGNVG---VMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SEEEECSCCHH---HHHHHHHTBCTTTCEEEEC
T ss_pred             CEEEECCCCHH---HHHHHHHHhhcCCcEEEEE
Confidence            99999987532   223333445555 555544

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=93.73  E-value=0.31  Score=46.13  Aligned_cols=41  Identities=22%  Similarity=0.305  Sum_probs=35.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~   62 (273)
T 1ae1_A           21 GTTALVTGGSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECL   62 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            467889985 899999999999999  99999999987665543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.71  E-value=0.047  Score=52.92  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +++|.|||+|..|...|..|++.|  ++|+++++.+
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~   38 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLP   38 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            468999999999999999999998  9999999864

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.69  E-value=0.24  Score=47.83  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=35.9

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      ++|.|.|+ |.+|.++|..|++.|  ++|++.+|+.+..+.+.+
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   73 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARRG--ARLVLSDVDQPALEQAVN   73 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            57999996 889999999999999  999999999987766544

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.69  E-value=0.2  Score=49.83  Aligned_cols=95  Identities=13%  Similarity=0.120  Sum_probs=58.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~a  200 (458)
                      ..+|.|+|+|.+|...+..+...|  . .|++.++++++.+.+++.|....+... ..      ..+..+.+     ..+
T Consensus       191 g~~VlV~GaG~vG~~avqla~~~G--a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~-~~------~~~~~~~v~~~~~~g~  261 (373)
T 2fzw_A          191 GSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKEFGATECINPQ-DF------SKPIQEVLIEMTDGGV  261 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHHHTCSEEECGG-GC------SSCHHHHHHHHTTSCB
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHcCCceEeccc-cc------cccHHHHHHHHhCCCC
Confidence            368999999999998888777778  6 799999999888877776643110000 00      01222211     268


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCC-CeEEEec
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPG-LPFISLS  233 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~-~ivV~~s  233 (458)
                      |+||-++....   .+......++++ ..++.+.
T Consensus       262 D~vid~~g~~~---~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          262 DYSFECIGNVK---VMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             SEEEECSCCHH---HHHHHHHTBCTTTCEEEECS
T ss_pred             CEEEECCCcHH---HHHHHHHhhccCCcEEEEEe
Confidence            99999987532   223333445555 5555443

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.68  E-value=0.24  Score=47.43  Aligned_cols=42  Identities=19%  Similarity=0.258  Sum_probs=35.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..+|..|++.|  ++|++.+|+.+..+.+.+
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   60 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELG--SNVVIASRKLERLKSAAD   60 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            468999985 899999999999999  999999999876655443

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.67  E-value=0.052  Score=54.55  Aligned_cols=33  Identities=33%  Similarity=0.377  Sum_probs=30.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |+|.|||+|..|.+.|..|+++|  ++|+++.++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAG--HEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CceEEEeCCC
Confidence            58999999999999999999999  9999999864

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=93.66  E-value=0.25  Score=46.48  Aligned_cols=42  Identities=19%  Similarity=0.277  Sum_probs=35.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   49 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEG--TAIALLDMNREALEKAEA   49 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            467889985 899999999999999  999999999877665543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.66  E-value=0.22  Score=46.68  Aligned_cols=41  Identities=17%  Similarity=0.192  Sum_probs=34.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   55 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDG--AHVVVSSRKQENVDRTV   55 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            367888885 899999999999999  99999999987665543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=93.65  E-value=0.32  Score=45.48  Aligned_cols=42  Identities=26%  Similarity=0.391  Sum_probs=36.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.+
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~   51 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGG--AKVVIVDRDKAGAERVAG   51 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence            467899996 789999999999999  999999999988776654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=93.65  E-value=0.32  Score=46.41  Aligned_cols=41  Identities=15%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+.+..+.+.
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G--~~V~~~~r~~~~~~~~~   67 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLG--AQCVIASRKMDVLKATA   67 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence            468999995 899999999999999  99999999987665544

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=93.62  E-value=0.32  Score=45.37  Aligned_cols=42  Identities=21%  Similarity=0.231  Sum_probs=36.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.+
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~   49 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEG--ATVAACDLDRAAAQETVR   49 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH
Confidence            467999985 999999999999999  999999999887766554

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=93.62  E-value=0.16  Score=48.12  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=35.1

Q ss_pred             chhhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHh
Q 012720          121 TDILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINE  170 (458)
Q Consensus       121 ~~~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~-~r~~~~~e~l~~  170 (458)
                      .+.|..+++|.|.|+ |.+|.++|..|++.|  ++|.+. +|+++..+.+.+
T Consensus        20 ~~~m~~~k~vlITGas~gIG~a~a~~l~~~G--~~V~~~~~~~~~~~~~~~~   69 (272)
T 4e3z_A           20 FQSMSDTPVVLVTGGSRGIGAAVCRLAARQG--WRVGVNYAANREAADAVVA   69 (272)
T ss_dssp             ----CCSCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHH
T ss_pred             hhhccCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCChhHHHHHHH
Confidence            344555567888885 999999999999999  999776 788776665543

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=93.59  E-value=0.053  Score=55.48  Aligned_cols=34  Identities=35%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC--eEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL--KVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~--~V~v~~r~~  162 (458)
                      +++|+|||+|..|.+.|..|+++|  +  +|+++.++.
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G--~~~~V~vlEa~~   37 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAP--CPPKVVLVESSE   37 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSS--SCCEEEEECSSS
T ss_pred             CceEEEECCcHHHHHHHHHHHhCC--CCCcEEEEeCCC
Confidence            478999999999999999999999  8  999998754

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=93.59  E-value=0.24  Score=46.40  Aligned_cols=42  Identities=17%  Similarity=0.379  Sum_probs=36.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|.+.+|+++..+.+.+
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   49 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDG--YRVVLIARSKQNLEKVHD   49 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            457888896 899999999999999  999999999987766554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=93.57  E-value=0.41  Score=46.59  Aligned_cols=96  Identities=18%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhh-cCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTA-LLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea-~~~aDiV  203 (458)
                      .++|..||+|..|.. +..+++ .|  .+|+.+|.+++.++..++......      + .++.+ ..|..+. -...|+|
T Consensus       123 g~rVLDIGcG~G~~t-a~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~g------l-~~v~~v~gDa~~l~d~~FDvV  192 (298)
T 3fpf_A          123 GERAVFIGGGPLPLT-GILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLG------V-DGVNVITGDETVIDGLEFDVL  192 (298)
T ss_dssp             TCEEEEECCCSSCHH-HHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHHT------C-CSEEEEESCGGGGGGCCCSEE
T ss_pred             cCEEEEECCCccHHH-HHHHHHccC--CEEEEEECCHHHHHHHHHHHHhcC------C-CCeEEEECchhhCCCCCcCEE
Confidence            479999999985432 222343 35  799999999988776655311000      1 12332 2233332 2468999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +++.-......+++++...+++|..++..
T Consensus       193 ~~~a~~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          193 MVAALAEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             EECTTCSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             EECCCccCHHHHHHHHHHHcCCCcEEEEE
Confidence            98765566778899999999998776643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.55  E-value=0.29  Score=45.95  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=35.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|.++|..|++.|  ++|++.+|+++..+.+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~   48 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEG--AHIVLVARQVDRLHEAA   48 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            467889985 899999999999999  99999999987665544

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=93.54  E-value=0.16  Score=49.30  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=31.6

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      +|+|.|.| +|-+|+.++..|++.|  ++|++..|+.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G--~~V~~~~r~~~   44 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKG--YAVNTTVRDPD   44 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTT--CEEEEEESCTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCC--CEEEEEEcCcc
Confidence            57899999 5999999999999999  99999888754

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=93.52  E-value=0.27  Score=46.44  Aligned_cols=83  Identities=14%  Similarity=0.104  Sum_probs=55.2

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ++|.|-| ++.+|.++|..|++.|  .+|.+.+|+++..+.+.+++.+            +...        .+|+    
T Consensus         3 K~vlVTGas~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~~~~------------~~~~--------~~Dv----   56 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAG--DKVCFIDIDEKRSADFAKERPN------------LFYF--------HGDV----   56 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHTTCTT------------EEEE--------ECCT----
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcCC------------EEEE--------EecC----
Confidence            4567777 5889999999999999  9999999999887776654311            1100        0110    


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ....+++.+++++...+.+=.++|+.. |+.
T Consensus        57 ~~~~~v~~~v~~~~~~~g~iDiLVNNA-G~~   86 (247)
T 3ged_A           57 ADPLTLKKFVEYAMEKLQRIDVLVNNA-CRG   86 (247)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECC-CCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECC-CCC
Confidence            123457777777766555545777766 554

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=93.51  E-value=0.34  Score=46.49  Aligned_cols=86  Identities=13%  Similarity=0.176  Sum_probs=57.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCC---eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQL---KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~---~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .+++.|.|+ |.+|.++|..|++.|  +   .|.+.+|+.+..+.+.+.-                     .+...+.++
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G--~~~~~V~~~~r~~~~~~~~~~~l---------------------~~~~~~~~~   89 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEAS--NGDMKLILAARRLEKLEELKKTI---------------------DQEFPNAKV   89 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHHH---------------------HHHCTTCEE
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcC--CCCceEEEEECCHHHHHHHHHHH---------------------HhhCCCCeE
Confidence            467889985 899999999999988  6   9999999998777665421                     111112233


Q ss_pred             EEEcCc---cccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          203 CLHAMP---VQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       203 VilaVp---~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .++.+-   ..+++.+++++.....+=.+||... |+
T Consensus        90 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA-G~  125 (287)
T 3rku_A           90 HVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA-GK  125 (287)
T ss_dssp             EEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECC-CC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC-Cc
Confidence            333221   3567788887766555545777766 54

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=93.51  E-value=0.062  Score=53.87  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|||+|..|..+|..|+++|  ++|+++++.+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~   38 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSP   38 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            468999999999999999999999  9999999764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=93.51  E-value=0.3  Score=45.04  Aligned_cols=41  Identities=17%  Similarity=0.223  Sum_probs=35.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+++..+.+.
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   48 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAG--STVIITGTSGERAKAVA   48 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCChHHHHHHH
Confidence            467889985 999999999999999  99999999987666554

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=93.48  E-value=0.4  Score=45.37  Aligned_cols=41  Identities=24%  Similarity=0.333  Sum_probs=35.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      .++|.|.|+ |.+|..++..|++.|  ++|++.+|+.+..+.+.
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~   73 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQG--LKVVGCARTVGNIEELA   73 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEECChHHHHHHH
Confidence            467999985 999999999999999  99999999987666554

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.48  E-value=0.052  Score=54.53  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=30.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+|.|||+|..|...|..|+++|  .+|+++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            58999999999999999999999  9999999864

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.47  E-value=0.4  Score=44.90  Aligned_cols=42  Identities=14%  Similarity=0.157  Sum_probs=36.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ |.+|.++|..|++.|  ++|.+.+|+.+..+.+.+
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~   50 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREG--ATVAIADIDIERARQAAA   50 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            367889995 899999999999999  999999999887766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d1n1ea1	160	a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydro	2e-44
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	4e-38
d1txga1	155	a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydro	5e-38
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	2e-26
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	1e-16
d1vjta1	193	c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM07	2e-16
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	3e-11
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	6e-07

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 160

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score =  150 bits (381), Expect = 2e-44
 Identities = 61/149 (40%), Positives = 93/149 (62%)

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGL 367
           D  G E+A A+KNVLAI +G+  G+ +G N+ AAL+ +G  EIR L   +G   + + GL
Sbjct: 2   DTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGL 61

Query: 368 SGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVK 427
           +G GD+ LTC   LSRN TVG +LG G  +++I  +   VAEGV+TA  ++ LA++  VK
Sbjct: 62  AGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVK 121

Query: 428 MPVLTAVARIIDNELTPKKAVLELMSLPQ 456
           MP+   +  I+  +  P+ A+ +L+S   
Sbjct: 122 MPLCHQIYEIVYKKKNPRDALADLLSCGL 150

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score =  135 bits (340), Expect = 4e-38
 Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 11/186 (5%)

Query: 128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV 187
           NK VV G G+FGTA+A  ++ K  +  V +   +    + +NEK  N  +    +L  N+
Sbjct: 8   NKAVVFGSGAFGTALAMVLSKKCRE--VCVWHMNEEEVRLVNEKRENVLFLKGVQLASNI 65

Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYV-----DPGLPFISLSKGLELNTLR 242
             T+D + A  GA+  L  +P QF   F E     +     +  +P +  +KG+E +TL+
Sbjct: 66  TFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK 125

Query: 243 MMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLAS--KH 300
             ++II + L +P      L+GPSFA+E+   + T + +AS D  +A  +Q+++++  + 
Sbjct: 126 FPAEIIGEFLPSPL--LSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRS 183

Query: 301 LRISTS 306
                +
Sbjct: 184 FVCWAT 189

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 155

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  133 bits (336), Expect = 5e-38
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNN-----SMAALVAQGCSEIRWLATKMGAKPA 362
           D+ G EI  ALKNV +IA   + G     N     +   +  +  +E+  L   +G    
Sbjct: 1   DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRE 60

Query: 363 TITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMN----QVAEGVSTAGAVI 418
           T  GLSG GD++ T      RN  +G  LG G  +D+ +  +      V EG  TA    
Sbjct: 61  TAFGLSGFGDLIATFRGG--RNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAY 118

Query: 419 ALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMS 453
            L+ K N    +L ++ R++   L  ++ + EL +
Sbjct: 119 RLSSKINADTKLLDSIYRVLYEGLKVEEVLFELAT 153

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  103 bits (256), Expect = 2e-26
 Identities = 27/180 (15%), Positives = 81/180 (45%), Gaps = 2/180 (1%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
            V +LG G+ G+A++  + +  ++++++    D  + +SI+    + R   +      + 
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVK-LNGVEIF 60

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT-LRMMSQI 247
                +  L  A+  L  +        +  I  Y+      +     ++ +  +  + + 
Sbjct: 61  WPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEA 120

Query: 248 IPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRISTSS 307
           + +   + R+  +A++GP+ A E+  ++PT +V +S     AN ++++  +++  +  ++
Sbjct: 121 VWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 75.7 bits (185), Expect = 1e-16
 Identities = 35/184 (19%), Positives = 56/184 (30%), Gaps = 17/184 (9%)

Query: 127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRY-FPEQKLPE 185
           +    VLG G+ G A AA++A K     V     D    + I ++               
Sbjct: 1   SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAH 58

Query: 186 NVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMS 245
             + T+D   A+  AD  L  +P    +S    I+ Y+  G   I L+ G     L    
Sbjct: 59  PDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEG-QLIILNPGATGGALEFRK 117

Query: 246 QIIPQALRNPRQPFIALSGPSFALELM-----------NKLPTAMVVASKDRKLANAVQQ 294
            +       P       S   F                  +  A + A+K       +  
Sbjct: 118 ILR--ENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGS 175

Query: 295 LLAS 298
           +L  
Sbjct: 176 VLPQ 179

>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

 Score = 75.2 bits (184), Expect = 2e-16
 Identities = 29/200 (14%), Positives = 68/200 (34%), Gaps = 21/200 (10%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVC-QSINEKHCN------CRYFPEQ 181
           K+ ++G GS   A+       ++     +   D  +    ++E+  N       +Y  E 
Sbjct: 4   KISIIGAGSVRFALQLVGDIAQT---EELSREDTHIYMMDVHERRLNASYILARKYVEEL 60

Query: 182 KLPENVIATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTL 241
             P  ++ T+    A+ GAD+ ++            G   + +     +    G      
Sbjct: 61  NSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEV--TKVGEKHGYYRGID 118

Query: 242 RMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHL 301
                ++                   A ++    P A ++ +     AN V ++  ++ +
Sbjct: 119 SQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQT-----ANPVFEI--TQAV 171

Query: 302 RISTSSDVTGV--EIAGALK 319
           R  T +++ G    +AG  +
Sbjct: 172 RRWTGANIVGFCHGVAGVYE 191

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 60.5 bits (145), Expect = 3e-11
 Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 9/212 (4%)

Query: 129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENV 187
           +V +LGG G+ G  +A  +A      ++ +  R     ++   ++            +N 
Sbjct: 2   RVALLGGTGNLGKGLALRLA--TLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNE 59

Query: 188 IATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQI 247
               +A    +      HA+        +      V P +P    +KG   ++ R  ++I
Sbjct: 60  D-AAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEI 118

Query: 248 IPQAL--RNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST 305
           + + L           +    FA           V    D      +  +     LR   
Sbjct: 119 VAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRP-- 176

Query: 306 SSDVTGVEIAGALKNVLAIAAGIVVGMNLGNN 337
             D   +  +  ++++  +   I+    +G  
Sbjct: 177 -LDAGPLSNSRLVESLTPLILNIMRFNGMGEL 207

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (111), Expect = 6e-07
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVI 188
           K+ VLG G+ G      +   K   +V   +R P    S+N    +   F E        
Sbjct: 2   KITVLGCGALGQLWLTALC--KQGHEVQGWLRVPQPYCSVNLVETDGSIFNE-------S 52

Query: 189 ATTDAKTALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE 237
            T +    L  +D  L  +     S  ++ ++  +    P + +  G+ 
Sbjct: 53  LTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMG 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.96
d1n1ea1	160	Glycerol-3-phosphate dehydrogenase {Trypanosome (L	99.93
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.91
d1txga1	155	Glycerol-3-phosphate dehydrogenase {Archaeoglobus	99.9
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.82
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.78
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.77
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.7
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.69
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.68
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.65
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.63
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.62
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.62
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.59
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.57
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.55
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.51
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.5
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.32
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.18
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.14
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.96
d1ks9a1	124	Ketopantoate reductase PanE {Escherichia coli [Tax	98.94
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	98.93
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.84
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.81
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.78
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.76
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.74
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.71
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.66
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.66
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.65
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.54
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.53
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.43
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.41
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.4
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.38
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.38
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.37
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.36
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.34
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.31
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.31
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.3
d1vpda1	133	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.27
d3cuma1	134	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.27
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.27
d2cvza1	132	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.26
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.25
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.16
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.14
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.11
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.11
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.1
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.04
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.02
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.02
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.01
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.99
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.96
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.95
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.93
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.93
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.91
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.91
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.91
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.78
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.73
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.68
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.66
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.61
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.54
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.53
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.51
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.49
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.48
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.46
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.44
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.44
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.43
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.38
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.36
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.3
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.21
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.19
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.14
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.14
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.11
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.03
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.02
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.01
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.0
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.98
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.94
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.94
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.94
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.94
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.9
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.89
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.82
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	96.71
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.69
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.5
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.49
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.49
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.47
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.45
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.4
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.32
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.25
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.19
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.17
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.17
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.13
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.11
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.06
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.05
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.02
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.91
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.9
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.88
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.85
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.85
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.8
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.79
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.77
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.73
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.67
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.65
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.63
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.57
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.56
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.55
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.54
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.47
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.46
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.42
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.39
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.39
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.38
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.37
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.36
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.36
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.29
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.25
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.25
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.2
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.17
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.15
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.11
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.08
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.05
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.05
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.03
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.02
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.02
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.01
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.99
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.97
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.88
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.84
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.82
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	94.81
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.8
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.77
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.7
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.68
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.65
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.63
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.61
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.61
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.59
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.51
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.45
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.44
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.36
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.35
d1mv8a1	98	GDP-mannose 6-dehydrogenase, middle domain {Pseudo	94.31
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.29
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.23
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.21
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.2
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.2
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.17
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.99
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.97
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.96
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.94
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.91
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.91
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.91
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.88
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.84
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.77
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.73
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.69
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.68
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.68
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.67
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.63
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.53
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.52
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.48
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.46
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.39
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	93.32
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.27
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.26
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.26
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.2
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.2
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.18
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.11
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.0
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.87
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.78
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.78
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.73
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.7
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.69
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.67
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.65
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	92.55
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.5
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.36
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.36
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.22
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.22
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.14
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.13
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.11
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.1
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.87
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.83
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.81
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.65
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	91.56
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.36
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.3
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.26
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.04
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.0
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.94
d1dlja1	98	UDP-glucose dehydrogenase (UDPGDH), middle domain	90.75
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.64
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	90.6
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	90.55
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	90.46
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.41
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.2
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	90.05
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	89.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	89.81
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.77
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	89.74
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.73
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.69
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.69
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.63
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.61
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.56
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.42
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.1
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	88.95
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.89
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	88.81
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.8
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.7
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.66
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.5
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	88.43
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	88.36
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.29
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.13
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.08
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	87.91
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	87.89
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	87.87
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	87.76
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	87.66
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.16
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.92
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	86.85
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.79
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.76
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	86.55
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	86.55
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	86.54
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.4
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	86.14
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	86.0
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.95
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	85.9
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	85.84
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.61
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	85.56
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	85.55
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.32
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	85.24
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	85.1
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	84.81
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	84.74
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.62
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.6
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	84.53
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	84.46
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	84.37
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	84.33
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.12
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	84.02
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	83.53
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	83.16
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	83.11
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	82.83
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	82.68
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	82.51
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.47
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	82.16
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	82.09
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	81.87
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	81.83
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	81.51
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	81.38
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	80.94
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	80.62
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	80.59
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	80.36
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.35
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	80.14
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	80.14

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.96  E-value=5.6e-29  Score=228.81  Aligned_cols=179  Identities=30%  Similarity=0.445  Sum_probs=163.1

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      -|+.|+||+|||+|+||+++|..|+++|  |+|++|+|+++.++.+++.+.+.+|+++..+|+++.+++|++++++++|+
T Consensus         3 ~~~~m~KI~ViGaG~wGtAlA~~La~~g--~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~   80 (189)
T d1n1ea2           3 ELLYLNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEI   80 (189)
T ss_dssp             CCCCEEEEEEECCSHHHHHHHHHHHTTE--EEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSC
T ss_pred             ccceeceEEEECCCHHHHHHHHHHHHcC--CeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCE
Confidence            3556778999999999999999999999  99999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCccccHHHHHHhhhhc-----CCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCe
Q 012720          203 CLHAMPVQFSSSFLEGISDY-----VDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPT  277 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~-----l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t  277 (458)
                      ||++||++.++++++++.++     +.++.++++++||+++++...+++.+.+.++.  ..++++.||+++.|+++|.++
T Consensus        81 iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~--~~~~vlsGP~~A~Ev~~~~pt  158 (189)
T d1n1ea2          81 ILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFT  158 (189)
T ss_dssp             EEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCE
T ss_pred             EEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcc--cceEEEecCCcHHHHHcCCCc
Confidence            99999999999999988653     45678899999999998888999999888765  357899999999999999999


Q ss_pred             EEEEccCCHHHHHHHHHHHhc--CCCeEEE
Q 012720          278 AMVVASKDRKLANAVQQLLAS--KHLRIST  305 (458)
Q Consensus       278 ~v~i~g~d~e~~e~l~~lL~~--~g~~v~~  305 (458)
                      .+++++.+.+..+.++++|++  ..|+++.
T Consensus       159 ~~viAs~~~~~a~~i~~lfst~~~~frvy~  188 (189)
T d1n1ea2         159 CVSIASADINVARRLQRIMSTGDRSFVCWA  188 (189)
T ss_dssp             EEEEECSSHHHHHHHHHHHSCTTSSEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHhCCCCCCEEEec
Confidence            999999999999999999985  3588875

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.93  E-value=1.4e-25  Score=200.33  Aligned_cols=150  Identities=41%  Similarity=0.656  Sum_probs=145.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccch
Q 012720          307 SDVTGVEIAGALKNVLAIAAGIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRT  386 (458)
Q Consensus       307 ~di~~~~~~kalkNi~ai~~G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~  386 (458)
                      .|+.|+|+++++||++|+++|+.++++++.|...+++.+++.|+..+++++|.+++++++++|+||+++||++..+||++
T Consensus         1 tD~~GvE~~galKNi~Aia~Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~   80 (160)
T d1n1ea1           1 TDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFT   80 (160)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHHhcCCC
Q 012720          387 VGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSLPQ  456 (458)
Q Consensus       387 ~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~~~  456 (458)
                      +|..+++|.+.+++.+.+++++||...+..++++++++++++|+.+++|+++.++.+|+++++.|+++|.
T Consensus        81 ~G~~l~~g~~~~e~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~~~~p~~~i~~Lm~r~~  150 (160)
T d1n1ea1          81 VGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYKKKNPRDALADLLSCGL  150 (160)
T ss_dssp             HHHHHHHTCCHHHHHHSCCSCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHSCCCHHHHHHHHTTSCS
T ss_pred             HHHHHhccccHHHHHHhccchHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHhCcCCHHHHHHHHHCCCC
Confidence            9999999999999988889999999999999999999999999999999999999999999999999874

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=5.6e-24  Score=193.62  Aligned_cols=175  Identities=18%  Similarity=0.276  Sum_probs=145.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeC--CHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMR--DPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r--~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|||+|+||+++|..|+++|  ++|++|.|  +++.++.+++.+.+..+ +....+..+.+++|.+++++++|+||+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g--~~V~l~~r~~~~~~~~~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGTEFDTEILKSISAGREHPRL-GVKLNGVEIFWPEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC--CEEEEECCGGGHHHHHHHHTTCCBTTT-TBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CEEEEEEecccHHHHHHHhhhhhhhhh-cchhccccccccccHHHHHhccchhhc
Confidence            79999999999999999999999  99999998  45568888876655443 222234456778899999999999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcch--hhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNT--LRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t--~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      +||++.++++++++.+++++ ..++.+++|+....  ...+.+.+.+..+.....++++.||+++.|++.+.++.+++++
T Consensus        78 avps~~~~~~~~~l~~~l~~-~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias  156 (180)
T d1txga2          78 GVSTDGVLPVMSRILPYLKD-QYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSS  156 (180)
T ss_dssp             CSCGGGHHHHHHHHTTTCCS-CEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred             ccchhhhHHHHHhhcccccc-ceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEc
Confidence            99999999999999999875 46677888885432  2346777777655433457899999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEc
Q 012720          284 KDRKLANAVQQLLASKHLRISTS  306 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~  306 (458)
                      .+.+.++.++++|++..|+++.+
T Consensus       157 ~~~~~a~~i~~~f~~~~frvy~S  179 (180)
T d1txga2         157 PSESSANKMKEIFETEYFGVEVT  179 (180)
T ss_dssp             SCHHHHHHHHHHHCBTTEEEEEE
T ss_pred             CCHHHHHHHHHHHCCCCEEEEeC
Confidence            99999999999999999999875

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.90  E-value=8.3e-24  Score=187.56  Aligned_cols=145  Identities=30%  Similarity=0.464  Sum_probs=136.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCC
Q 012720          308 DVTGVEIAGALKNVLAIAAGIVVGMNLG-----NNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLS  382 (458)
Q Consensus       308 di~~~~~~kalkNi~ai~~G~~~~~kl~-----~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~s  382 (458)
                      |+.|+|+++++||++|+++|+.++++++     .|+..+++.+++.|+..+++++|.+++++++++|+||++.||++  +
T Consensus         1 DviGvEi~galKNi~Aia~Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~--s   78 (155)
T d1txga1           1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG--G   78 (155)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC--H
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCC--C
Confidence            7899999999999999999999988765     69999999999999999999999999999999999999999986  8


Q ss_pred             ccchHHHHhhCCCChHHHHhhcc----ccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcCCCHHHHHHHHhcC
Q 012720          383 RNRTVGVRLGSGEKLDDILSSMN----QVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMSL  454 (458)
Q Consensus       383 rn~~~g~~l~~g~~~e~~~~~~~----~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~~~~~~~~~~l~~~  454 (458)
                      ||+++|..+++|.+.+++.++++    .++||...++.++++++++++++|+++.+|+++.++.+|++++++|+++
T Consensus        79 RN~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~~~~~~~~i~~L~~R  154 (155)
T d1txga1          79 RNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYEGLKVEEVLFELATF  154 (155)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCCCHHHHHHHHHTT
T ss_pred             CccHHHHHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhCcCCHHHHHHHHHcC
Confidence            99999999999999887766553    4899999999999999999999999999999999999999999999987

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.82  E-value=3.5e-20  Score=165.01  Aligned_cols=155  Identities=17%  Similarity=0.197  Sum_probs=121.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||||||+|.||..||.+|+++|  ++|++|||++++++.+.+.+              .....+++|+++++|+||+||
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNPEAIADVIAAG--------------AETASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTT--------------CEECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEehhHHHHHHHHHHHHCC--CeEEEEeCCcchhHHHHHhh--------------hhhcccHHHHHhCCCeEEEEc
Confidence            79999999999999999999999  99999999999999998765              345678999999999999999


Q ss_pred             cc-ccHHHHH---HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          208 PV-QFSSSFL---EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       208 p~-~~v~~vl---~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      |. .++++++   +.+.+.++++++||+++ ++.+++.+.+.+.+.+. +     +.++..|..............++.+
T Consensus        65 ~~~~~v~~v~~~~~~~~~~~~~g~iiid~s-T~~p~~~~~~~~~~~~~-g-----~~~vdapv~gg~~~a~~g~l~~~~g  137 (161)
T d1vpda2          65 PNSPHVKEVALGENGIIEGAKPGTVLIDMS-SIAPLASREISDALKAK-G-----VEMLDAPVSGGEPKAIDGTLSVMVG  137 (161)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHTT-T-----CEEEECCEESHHHHHHHTCEEEEEE
T ss_pred             CCHHHHHHHHhCCcchhhccCCCCEEEECC-CCCHHHHHHHHHHHHHc-C-----CceecccccCChhHHhcCCeEEEEc
Confidence            95 6788887   45788889999999999 57776655555555443 2     4566666654432221222345566


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEE
Q 012720          284 KDRKLANAVQQLLASKHLRIST  305 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~  305 (458)
                      ++++.+++++++|+..+.++++
T Consensus       138 G~~~~~~~~~~il~~~~~~i~~  159 (161)
T d1vpda2         138 GDKAIFDKYYDLMKAMAGSVVH  159 (161)
T ss_dssp             SCHHHHHHHHHHHHTTEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCceEE
Confidence            6899999999999988877665

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.78  E-value=8e-19  Score=156.32  Aligned_cols=156  Identities=14%  Similarity=0.170  Sum_probs=119.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |+||+|||+|.||.+||.+|.++|  |+|.+|||++++.+.+...+              .....++.+++..+|+|++|
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g--~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~diii~~   64 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQSAVDGLVAAG--------------ASAARSARDAVQGADVVISM   64 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHTT--------------CEECSSHHHHHTSCSEEEEC
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCC--CeEEEEECchhhhhhhhhhh--------------ccccchhhhhccccCeeeec
Confidence            579999999999999999999999  99999999999998888765              23456888899999999999


Q ss_pred             Ccc-ccHHHHHHh---hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc
Q 012720          207 MPV-QFSSSFLEG---ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA  282 (458)
Q Consensus       207 Vp~-~~v~~vl~~---i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~  282 (458)
                      |+. ..+++++..   +.+.+.++++||+++ ++.+++...+.+.+.+. |..+.++.+..||..+.   .|.  ..++.
T Consensus        65 v~~~~~~~~v~~~~~~~~~~l~~g~iiid~s-t~~p~~~~~~~~~~~~~-gi~~~dapv~Gg~~~a~---~G~--l~~~~  137 (162)
T d3cuma2          65 LPASQHVEGLYLDDDGLLAHIAPGTLVLECS-TIAPTSARKIHAAARER-GLAMLDAPVSGGTAGAA---AGT--LTFMV  137 (162)
T ss_dssp             CSCHHHHHHHHHSTTCHHHHSCTTCEEEECS-CCCHHHHHHHHHHHHHT-TCEEEECCEESCHHHHH---HTC--EEEEE
T ss_pred             ccchhhHHHHHhccccccccCCCCCEEEECC-CCCHHHHHHHHHHHHHC-CCcEEecccccCccccc---cCC--eEEEe
Confidence            996 456777654   677788999999999 57777666667766554 43223333444443332   344  34556


Q ss_pred             cCCHHHHHHHHHHHhcCCCeEEE
Q 012720          283 SKDRKLANAVQQLLASKHLRIST  305 (458)
Q Consensus       283 g~d~e~~e~l~~lL~~~g~~v~~  305 (458)
                      +++++.+++++++|+..+.++++
T Consensus       138 gG~~~~~~~~~~il~~~~~~v~~  160 (162)
T d3cuma2         138 GGDAEALEKARPLFEAMGRNIFH  160 (162)
T ss_dssp             ESCHHHHHHHHHHHHHHEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCccEE
Confidence            67899999999999988777654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.77  E-value=1e-18  Score=155.68  Aligned_cols=157  Identities=17%  Similarity=0.196  Sum_probs=113.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.||+.||..|.++|  ++|++|||+++.++++++.+..            -...++. ++++++|+||+||
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~a~~~~~~------------~~~~~~~-~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQSTCEKAVERQLV------------DEAGQDL-SLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTSC------------SEEESCG-GGGTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC--CEEEEEECCchHHHHHHHhhcc------------ceeeeec-ccccccccccccC
Confidence            79999999999999999999999  9999999999988888876531            1233444 5689999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECccc-----HH-HHhccCCeEEE-
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSF-----AL-ELMNKLPTAMV-  280 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~-----a~-ei~~g~~t~v~-  280 (458)
                      |...++++++++.+.++++++|+++++ .....    ...+.+.... ......+.||..     +. +...+.+..++ 
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~~~s-~~~~~----~~~~~~~~~~-~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~  139 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTDVAS-VKTAI----AEPASQLWSG-FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP  139 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEECCS-CCHHH----HHHHHHHSTT-CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEE
T ss_pred             cHhhhhhhhhhhhhhcccccceeeccc-cchHH----HHHHHHhhcc-cccceeeecccccchhhhcccccCCCeEEEEe
Confidence            999999999999999999999998873 33222    1223333222 122334444432     22 12233433332 


Q ss_pred             EccCCHHHHHHHHHHHhcCCCeEEE
Q 012720          281 VASKDRKLANAVQQLLASKHLRIST  305 (458)
Q Consensus       281 i~g~d~e~~e~l~~lL~~~g~~v~~  305 (458)
                      ..+.+++.++.++++|+..|.++++
T Consensus       140 ~~~~~~~~~~~v~~l~~~lG~~v~~  164 (165)
T d2f1ka2         140 TEYTDPEQLACLRSVLEPLGVKIYL  164 (165)
T ss_dssp             CTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhCCEEEe
Confidence            2356889999999999999999875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.70  E-value=6.5e-17  Score=142.34  Aligned_cols=148  Identities=15%  Similarity=0.207  Sum_probs=111.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|+||++|+..|.++|  ++|++|+|+.++.+.+.+..             ++.++.+.+++++.+|+||+||
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~--~~i~v~~r~~~~~~~l~~~~-------------g~~~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSKEIAEQL-------------ALPYAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS--CEEEEECSSHHHHHHHHHHH-------------TCCBCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCC--CeEEEEcChHHhHHhhcccc-------------ceeeechhhhhhhccceeeeec
Confidence            79999999999999999999998  99999999999988886542             1334568889899999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc-CCH
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS-KDR  286 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g-~d~  286 (458)
                      |.+.+.+++++    ++++++||++..|+..+       .+++.++.. .. .+...|+.+..+..+. +.+..+. .++
T Consensus        66 kp~~~~~vl~~----l~~~~~iis~~agi~~~-------~l~~~l~~~-~~-ivr~mPN~~~~v~~g~-~~~~~~~~~~~  131 (152)
T d2ahra2          66 KPQLFETVLKP----LHFKQPIISMAAGISLQ-------RLATFVGQD-LP-LLRIMPNMNAQILQSS-TALTGNALVSQ  131 (152)
T ss_dssp             CGGGHHHHHTT----SCCCSCEEECCTTCCHH-------HHHHHHCTT-SC-EEEEECCGGGGGTCEE-EEEEECTTCCH
T ss_pred             chHhHHHHhhh----cccceeEecccccccHH-------HHHhhhccc-cc-chhhccchhhhcCccc-eEEEeCCCCCH
Confidence            99888887654    45688999999898764       344555532 12 3455687776654432 2222222 368


Q ss_pred             HHHHHHHHHHhcCCCeEE
Q 012720          287 KLANAVQQLLASKHLRIS  304 (458)
Q Consensus       287 e~~e~l~~lL~~~g~~v~  304 (458)
                      +..+.++++|+..|..++
T Consensus       132 ~~~~~v~~l~~~~G~~~~  149 (152)
T d2ahra2         132 ELQARVRDLTDSFGSTFD  149 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            899999999999885443

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.69  E-value=1.3e-16  Score=140.21  Aligned_cols=148  Identities=17%  Similarity=0.223  Sum_probs=111.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|+||.+|+..|.++| +++|.+|+|++++.+.+.+++             ++.+.++.++ +.++|+||+||
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~~~~~~l~~~~-------------~~~~~~~~~~-v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGAEKRERLEKEL-------------GVETSATLPE-LHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSHHHHHHHHHHT-------------CCEEESSCCC-CCTTSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCChhHHHHhhhhc-------------cccccccccc-ccccceEEEec
Confidence            79999999999999999998887 489999999999999988753             2456666655 67899999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEc-cCCH
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVA-SKDR  286 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~-g~d~  286 (458)
                      |++++.++++++.+   .++++|++..|+..+       .+++.++..  ...+...|+.+..+..|.. .+... ..++
T Consensus        66 kP~~~~~v~~~l~~---~~~~viS~~ag~~~~-------~l~~~l~~~--~~iir~mpn~p~~~~~g~t-~~~~~~~~~~  132 (152)
T d1yqga2          66 KPQDMEAACKNIRT---NGALVLSVAAGLSVG-------TLSRYLGGT--RRIVRVMPNTPGKIGLGVS-GMYAEAEVSE  132 (152)
T ss_dssp             CHHHHHHHHTTCCC---TTCEEEECCTTCCHH-------HHHHHTTSC--CCEEEEECCGGGGGTCEEE-EEECCTTSCH
T ss_pred             CHHHHHHhHHHHhh---cccEEeecccCCCHH-------HHHHHhCcC--cceEeecccchhHhcCCcE-EEEeCCCCCH
Confidence            99889998887753   478999999888753       455666542  1245566777766555432 22222 2357


Q ss_pred             HHHHHHHHHHhcCCCeE
Q 012720          287 KLANAVQQLLASKHLRI  303 (458)
Q Consensus       287 e~~e~l~~lL~~~g~~v  303 (458)
                      +..+.++++|+..|..+
T Consensus       133 ~~~~~v~~l~~~~G~~~  149 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTV  149 (152)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHhCCCEE
Confidence            88899999999988544

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.68  E-value=2.8e-17  Score=148.05  Aligned_cols=161  Identities=9%  Similarity=0.060  Sum_probs=116.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +.+|+|||+|+||.+||.+|.++|  |+|++|||++++++.+.+++......      .......++.+++..+|.+|++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTVSKVDDFLANEAKGTKV------LGAHSLEEMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSTHHHHHHHHTTTTTSSC------EECSSHHHHHHHBCSSCEEEEC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCC--CeEEEEcCCHHHHHHHHHhccccccc------cchhhhhhhhhhhcccceEEEe
Confidence            358999999999999999999999  99999999999999998865321100      0111223555678899999999


Q ss_pred             Ccc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012720          207 MPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (458)
Q Consensus       207 Vp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d  285 (458)
                      ++. ..+.++++++.+.+++++++|+++ ++.+++...+.+.+.+. +..+.++.+..||..+.   .|. + + +.+++
T Consensus        74 ~~~~~~v~~v~~~l~~~~~~g~iiid~s-T~~~~~~~~~~~~~~~~-g~~~ldapvsGg~~~A~---~G~-~-~-~~gG~  145 (176)
T d2pgda2          74 VKAGQAVDNFIEKLVPLLDIGDIIIDGG-NSEYRDTMRRCRDLKDK-GILFVGSGVSGGEDGAR---YGP-S-L-MPGGN  145 (176)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHHT-TCEEEEEEEESHHHHHH---HCC-E-E-EEEEC
T ss_pred             cCchHHHHHHHHHHHhccccCcEEEecC-cchhHHHHHHHHHHHhc-CCceeccccccCccccc---CCc-E-E-EcCCC
Confidence            996 678999999999999999999998 56666556666666553 43333333444443222   343 3 3 34557


Q ss_pred             HHHHHHHHHHHhcCCCeE
Q 012720          286 RKLANAVQQLLASKHLRI  303 (458)
Q Consensus       286 ~e~~e~l~~lL~~~g~~v  303 (458)
                      ++.+++++++|+..+-++
T Consensus       146 ~~~~~~~~~il~~~~~kv  163 (176)
T d2pgda2         146 KEAWPHIKAIFQGIAAKV  163 (176)
T ss_dssp             TTTHHHHHHHHHHHSCBC
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            888999999998766543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=9.6e-18  Score=148.49  Aligned_cols=162  Identities=15%  Similarity=0.179  Sum_probs=105.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|+||+.+|..|+++|  |+|++|+|++++.+.+...+.+..     ... .....++ .+....+|+||+||
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~-----~~~-~~~~~~~-~~~~~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQPYCSVNLVETDGS-----IFN-ESLTAND-PDFLATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCSEEEEEEECTTSC-----EEE-EEEEESC-HHHHHTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHHHhhhhccccCCcc-----ccc-cccccch-hhhhcccceEEEee
Confidence            79999999999999999999999  999999999865433322221111     111 1223334 45578999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCC----CCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPR----QPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~----~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      |+.+++++++.+.+++.++++|++++||+....      .+.+. ....    ........|....+.+.|. +.+-...
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~------~l~~~-~~~v~~g~~~~~~~~~~~~i~~~~~g~-t~ig~~~  143 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIE------ELQNI-QQPLLMGTTTHAARRDGNVIIHVANGI-THIGPAR  143 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTG------GGTTC-CSCEEEEEECCEEEEETTEEEEEECCC-EEEEESS
T ss_pred             cccchHHHHHhhccccCcccEEeeccCcccHHH------HHhhc-CCcEEEEEeeEeEEecCCEEEEeCCcC-EEEeeCC
Confidence            999999999999999999999999999998752      12221 1110    0011222233333333332 2221222


Q ss_pred             CCHHHHHHHHHHHhcCCCeEEEc
Q 012720          284 KDRKLANAVQQLLASKHLRISTS  306 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v~~~  306 (458)
                      ...+..+.+.++|+++..++.++
T Consensus       144 ~~~~~~~~l~~~l~~a~~~~~W~  166 (167)
T d1ks9a2         144 QQDGDYSYLADILQTVLPDVAWH  166 (167)
T ss_dssp             GGGTTCTHHHHHHHTTSSCEEEC
T ss_pred             CcchhHHHHHHHHHhhCCCCccC
Confidence            23455678999998877676553

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.63  E-value=7.6e-16  Score=138.19  Aligned_cols=109  Identities=25%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCC-CCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKL-PENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l-~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +||+|||+|+||+++|..|+++|  |+|++|+|++++++.+++.+....+.++... ......++++.|+++++|+||+|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            79999999999999999999999  9999999999999999987765555544432 23345677899999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCCCcc
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      ||+.+++++++++++++.++++|+. ++|....
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv~-~~g~~~~  111 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLIIL-NPGATGG  111 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEE-SSCCSSH
T ss_pred             EchhHHHHHHHHhhhccCCCCEEEE-eCCCCcc
Confidence            9999999999999999999998774 4465543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.62  E-value=7.7e-16  Score=138.47  Aligned_cols=160  Identities=14%  Similarity=0.140  Sum_probs=113.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---hcCCCCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---ALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a~~~aDiVi  204 (458)
                      |||+|||+|.||.+||++|+++|  |+|++|||++++++.+.+.+......      .......+.++   .+..++.++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G--~~V~~~dr~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTYSKSEEFMKANASAPFA------GNLKAFETMEAFAASLKKPRKAL   73 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHTTTSTTG------GGEEECSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEEeehHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHcCCccccc------cchhhhhhhhHHHHhcccceEEE
Confidence            79999999999999999999999  99999999999999998876443221      12334444433   356778888


Q ss_pred             EcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEcc
Q 012720          205 HAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVAS  283 (458)
Q Consensus       205 laVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g  283 (458)
                      ++++. ..+..++..+...+.++++++++++ ..+++...+.+.+.+. +     +.++..|...........+.+ +.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~st-~~~~~~~~~~~~l~~~-~-----~~~ldapv~g~~~~a~~g~~~-mvg  145 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGN-AHFKDQGRRAQQLEAA-G-----LRFLGMGISGGEEGARKGPAF-FPG  145 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCC-CCHHHHHHHHHHHHTT-T-----CEEEEEEEESHHHHHHHCCEE-EEE
T ss_pred             EeecCcchhhhhhhhhhhhccccceecccCc-cchhHHHHHHHHHhhc-c-----eeEecccccCCcchhcCCcEE-Eee
Confidence            88875 5688888899999999999999984 5555444455544332 2     345555554432221112233 455


Q ss_pred             CCHHHHHHHHHHHhcCCCeE
Q 012720          284 KDRKLANAVQQLLASKHLRI  303 (458)
Q Consensus       284 ~d~e~~e~l~~lL~~~g~~v  303 (458)
                      ++++.+++++++|+..+.++
T Consensus       146 G~~~~~~~v~pil~~~~~~~  165 (178)
T d1pgja2         146 GTLSVWEEIRPIVEAAAAKA  165 (178)
T ss_dssp             ECHHHHHHHHHHHHHHSCBC
T ss_pred             CCHHHHHHHHHHHHHHhccc
Confidence            68999999999998766554

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.62  E-value=7.3e-16  Score=135.26  Aligned_cols=149  Identities=11%  Similarity=0.125  Sum_probs=101.5

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.||++||.+|.++|  |+|++|++++.........+..              +..+++|+++++|+||+||
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGRSPSTIERARTVG--------------VTETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTCCHHHHHHHHHHT--------------CEECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCC--CeEEEEcCchhHHHHHhhhccc--------------ccccHHHHHhhcCeEEEEe
Confidence            79999999999999999999999  9999999887766666555432              2346778899999999999


Q ss_pred             ccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012720          208 PVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK  287 (458)
Q Consensus       208 p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e  287 (458)
                      |.....+++.++.+.+  ++++|+++ ++.+++.+.+.    +.+...    .++.+|..+.....+..+.++++|++.+
T Consensus        65 ~~~~~~~~~~~~~~~~--~~~~id~s-t~~p~~~~~l~----~~~~~~----~~~d~~v~g~~~~~~~~~~~~~~G~~~~  133 (152)
T d1i36a2          65 TPGVALGAARRAGRHV--RGIYVDIN-NISPETVRMAS----SLIEKG----GFVDAAIMGSVRRKGADIRIIASGRDAE  133 (152)
T ss_dssp             CGGGHHHHHHHHHTTC--CSEEEECS-CCCHHHHHHHH----HHCSSS----EEEEEEECSCHHHHGGGCEEEEESTTHH
T ss_pred             cCchHHHHHHhhcccC--CceeeccC-cCCHHHHHHHH----HHHhcc----CCCcccccCCcccccCCcEEEEECCCHH
Confidence            9988888888877765  56888888 46665444433    333221    1333333222111222234556676665


Q ss_pred             HHHHHHHHHhcCCCeEEEcC
Q 012720          288 LANAVQQLLASKHLRISTSS  307 (458)
Q Consensus       288 ~~e~l~~lL~~~g~~v~~~~  307 (458)
                      .+++    |+..|..+.+.+
T Consensus       134 ~~~~----l~~~g~~i~~~G  149 (152)
T d1i36a2         134 EFMK----LNRYGLNIEVRG  149 (152)
T ss_dssp             HHHG----GGGGTCEEEECS
T ss_pred             HHHH----HHHcCCeeeEcC
Confidence            5544    566777776543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=2.9e-15  Score=131.99  Aligned_cols=151  Identities=17%  Similarity=0.187  Sum_probs=111.9

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp  208 (458)
                      ||+|||+|+||..||.+|.++|  +.| +|+|+.++.+.+.+.+..              ..... +.+.++|++|+++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g--~~~-~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~i~~~~   63 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRF--PTL-VWNRTFEKALRHQEEFGS--------------EAVPL-ERVAEARVIFTCLP   63 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTS--CEE-EECSSTHHHHHHHHHHCC--------------EECCG-GGGGGCSEEEECCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCC--CEE-EEeCCHHHHHHHHHHcCC--------------ccccc-ccccceeEEEeccc
Confidence            7999999999999999999988  655 788888877777665421              12233 44678999999999


Q ss_pred             c-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHH
Q 012720          209 V-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRK  287 (458)
Q Consensus       209 ~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e  287 (458)
                      . ..+..+...+...+.+++++|+++ ++.+++.+.+.+.+.+.      .+.++..|...........+..++.+++++
T Consensus        64 ~~~~v~~~~~~l~~~~~~~~~iid~s-T~~p~~~~~~~~~~~~~------gi~~ldapVsGg~~~A~~G~L~~~vgG~~~  136 (156)
T d2cvza2          64 TTREVYEVAEALYPYLREGTYWVDAT-SGEPEASRRLAERLREK------GVTYLDAPVSGGTSGAEAGTLTVMLGGPEE  136 (156)
T ss_dssp             SHHHHHHHHHHHTTTCCTTEEEEECS-CCCHHHHHHHHHHHHTT------TEEEEECCEESHHHHHHHTCEEEEEESCHH
T ss_pred             chhhhhhhhccccccccccccccccc-cCCHHHHHHHHHHHHHc------CCeEEeccccCchhhhccCCEEEEEeCCHH
Confidence            6 567788888999999999999998 57777666666666543      356777777665433333344567778999


Q ss_pred             HHHHHHHHHhcCCCeEEE
Q 012720          288 LANAVQQLLASKHLRIST  305 (458)
Q Consensus       288 ~~e~l~~lL~~~g~~v~~  305 (458)
                      .+++++++|+ .+-++++
T Consensus       137 ~~~~~~p~L~-~~~~v~~  153 (156)
T d2cvza2         137 AVERVRPFLA-YAKKVVH  153 (156)
T ss_dssp             HHHHHGGGCT-TEEEEEE
T ss_pred             HHHHHHHHHH-hcCcCEE
Confidence            9999999994 6555554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.57  E-value=4.6e-14  Score=125.48  Aligned_cols=162  Identities=13%  Similarity=0.135  Sum_probs=111.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil  205 (458)
                      |+||+|||+|.||+.+|..|.++|...+|++||++++..+.+++.+...            ...++.++ ...++|+||+
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~dlIil   68 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID------------EGTTSIAKVEDFSPDFVML   68 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS------------EEESCGGGGGGTCCSEEEE
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch------------hhhhhhhhhhccccccccc
Confidence            4679999999999999999999985458899999999988888765321            22334333 3458999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcc-----cHH-HHhccCCeEE
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPS-----FAL-ELMNKLPTAM  279 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~-----~a~-ei~~g~~t~v  279 (458)
                      |+|...+.++++++.++++++++|++++. +-..    ..+.+.+.++........+.|+.     .+. .+..|....+
T Consensus        69 a~p~~~~~~vl~~l~~~~~~~~ii~d~~s-~k~~----~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il  143 (171)
T d2g5ca2          69 SSPVRTFREIAKKLSYILSEDATVTDQGS-VKGK----LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVIL  143 (171)
T ss_dssp             CSCHHHHHHHHHHHHHHSCTTCEEEECCS-CCTH----HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEE
T ss_pred             cCCchhhhhhhhhhhcccccccccccccc-ccHH----HHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEE
Confidence            99999999999999999999999999874 2222    12233333332222333444432     222 1223443322


Q ss_pred             EEc-cCCHHHHHHHHHHHhcCCCeEEE
Q 012720          280 VVA-SKDRKLANAVQQLLASKHLRIST  305 (458)
Q Consensus       280 ~i~-g~d~e~~e~l~~lL~~~g~~v~~  305 (458)
                      +.. ..+.+.++.++++|+..|.++..
T Consensus       144 ~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         144 TPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             ecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            222 34788999999999999988764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.55  E-value=1.4e-14  Score=126.63  Aligned_cols=142  Identities=14%  Similarity=0.190  Sum_probs=106.0

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ++||+||| +|.||..||.+|.++|  |+|++|||++..                           +.++.+.++|++++
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G--~~V~~~d~~~~~---------------------------~~~~~~~~~~~v~~   59 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASG--YPISILDREDWA---------------------------VAESILANADVVIV   59 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTCGG---------------------------GHHHHHTTCSEEEE
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcC--CCcEeccccccc---------------------------ccchhhhhcccccc
Confidence            67999999 8999999999999999  999999997642                           22345678999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKD  285 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d  285 (458)
                      ++|..++.+++.++.+.+++++++++++ ++..+    +.+.+.+.++..+.....+.||.....  .+ ...++..+.+
T Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~iiiD~~-Svk~~----~~~~~~~~~~~~~v~~hP~~Gp~~~~~--~g-~~~v~~~g~~  131 (152)
T d2pv7a2          60 SVPINLTLETIERLKPYLTENMLLADLT-SVKRE----PLAKMLEVHTGAVLGLHPMFGADIASM--AK-QVVVRCDGRF  131 (152)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTSEEEECC-SCCHH----HHHHHHHHCSSEEEEEEECSCTTCSCC--TT-CEEEEEEEEC
T ss_pred             ccchhhheeeeecccccccCCceEEEec-ccCHH----HHHHHHHHccCCEEEecccCCCccccc--CC-cEEEEecCCC
Confidence            9999999999999999999999999998 45433    234444444332223345666654321  12 2334444567


Q ss_pred             HHHHHHHHHHHhcCCCeEEE
Q 012720          286 RKLANAVQQLLASKHLRIST  305 (458)
Q Consensus       286 ~e~~e~l~~lL~~~g~~v~~  305 (458)
                      .+.++++.++|+..|.+++.
T Consensus       132 ~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         132 PERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             GGGTHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHhCCEEEe
Confidence            78899999999999988864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.51  E-value=1.9e-13  Score=125.26  Aligned_cols=173  Identities=16%  Similarity=0.178  Sum_probs=122.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCC-------CCCCceEEeCCHHhhcCCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQ-------KLPENVIATTDAKTALLGA  200 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~-------~l~~~i~a~~~~~ea~~~a  200 (458)
                      |||+|||+|.+|.++|..|+++|  |+|++||.++++++.+++... +.+.++.       ........+++..+++.++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g--~~V~g~D~n~~~i~~ln~g~~-p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKS-PIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHTTCC-SSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHhHHHHHHHHHhCC--CcEEEEeCCHHHHHHhcccCC-cccchhhhhhhhhhhcccccccCCCHHHHHhhC
Confidence            79999999999999999999999  999999999999999987432 2222221       1235677889999999999


Q ss_pred             CEEEEcCccc----------cHHHHHHhhh---hcCCCCCeEEEeccCCCcchhhhHH-HHHHHHhCCC-CCCEEEEECc
Q 012720          201 DYCLHAMPVQ----------FSSSFLEGIS---DYVDPGLPFISLSKGLELNTLRMMS-QIIPQALRNP-RQPFIALSGP  265 (458)
Q Consensus       201 DiVilaVp~~----------~v~~vl~~i~---~~l~~~~ivV~~snGi~~~t~~~l~-e~l~~~lg~~-~~~~~vl~gP  265 (458)
                      |++++|||+.          .+..+++.+.   ....++++||..+ ++.+++.+.+. ..+.+..+.. ...+.+.+.|
T Consensus        78 d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~S-Tv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~P  156 (202)
T d1mv8a2          78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNP  156 (202)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECC
T ss_pred             CEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeecc-ccCCcchhhhhhhhhhccccccccccccchhhh
Confidence            9999999963          2455555543   4455677777766 67777655433 3444443321 2346778888


Q ss_pred             ccHHHHh----ccCCeEEEEccCCHHHHHHHHHHHhcCCCeEE
Q 012720          266 SFALELM----NKLPTAMVVASKDRKLANAVQQLLASKHLRIS  304 (458)
Q Consensus       266 ~~a~ei~----~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~  304 (458)
                      .+..+..    ...+..+++|+.+++..+.++++++....++.
T Consensus       157 E~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ii  199 (202)
T d1mv8a2         157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPII  199 (202)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEE
T ss_pred             hhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCCeE
Confidence            8764311    12344567788889999999999988655543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=3.5e-15  Score=130.60  Aligned_cols=149  Identities=9%  Similarity=0.015  Sum_probs=95.5

Q ss_pred             EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc
Q 012720          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV  209 (458)
Q Consensus       130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~  209 (458)
                      |+|||+|+||.+|+..|.+.+  +.+.+|+|++++++.+.+.+..              ...+++++++.+|+||+|||+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~--~~~~v~~R~~~~~~~l~~~~~~--------------~~~~~~~~~~~~DiVil~v~d   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRY--EIGYILSRSIDRARNLAEVYGG--------------KAATLEKHPELNGVVFVIVPD   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHTCC--------------CCCSSCCCCC---CEEECSCT
T ss_pred             EEEEeCcHHHHHHHHHHHhCC--CEEEEEeCChhhhcchhhcccc--------------cccchhhhhccCcEEEEeccc
Confidence            799999999999999997755  5557999999999999886531              122566778999999999999


Q ss_pred             ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHHHHhccCCeEEEEccCCHHHH
Q 012720          210 QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLA  289 (458)
Q Consensus       210 ~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~  289 (458)
                      .++.+++.++.   .+++++|+++.+...+.       +.....   .....+..|...........+..++.++|++.+
T Consensus        66 ~~i~~v~~~l~---~~~~ivi~~s~~~~~~~-------l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~  132 (153)
T d2i76a2          66 RYIKTVANHLN---LGDAVLVHCSGFLSSEI-------FKKSGR---ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGL  132 (153)
T ss_dssp             TTHHHHHTTTC---CSSCCEEECCSSSCGGG-------GCSSSE---EEEEECSCC--CTTGGGCGGGCCEEECCCTTTH
T ss_pred             hhhhHHHhhhc---ccceeeeecccchhhhh-------hhhhcc---ccceeeeecccccchhhhccCcEEEEeCCHHHH
Confidence            99999887764   36889999997665432       111110   011222233222211111112223334577889


Q ss_pred             HHHHHHHhcCCCeEEEcC
Q 012720          290 NAVQQLLASKHLRISTSS  307 (458)
Q Consensus       290 e~l~~lL~~~g~~v~~~~  307 (458)
                      +.++++|+..|.+++..+
T Consensus       133 ~~~~~l~~~lG~~~~~i~  150 (153)
T d2i76a2         133 PIVKKIAEEISGKYFVIP  150 (153)
T ss_dssp             HHHHHHHHHHCSCEEECC
T ss_pred             HHHHHHHHHHCCcEEEeC
Confidence            999999999998776643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.4e-11  Score=111.79  Aligned_cols=168  Identities=14%  Similarity=0.206  Sum_probs=113.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-----------cCCCcc-CCC---CCCCCceEEeC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-----------HCNCRY-FPE---QKLPENVIATT  191 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-----------g~~~~~-~~~---~~l~~~i~a~~  191 (458)
                      .+||+|||+|.||..+|..++.+|  ++|++||++++.++...+.           +..... ..+   .....++..++
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCC--CcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            579999999999999999999999  9999999999765544321           110000 000   00113467888


Q ss_pred             CHHhhcCCCCEEEEcCcc--ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCE-EEEECcccH
Q 012720          192 DAKTALLGADYCLHAMPV--QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPF-IALSGPSFA  268 (458)
Q Consensus       192 ~~~ea~~~aDiVilaVp~--~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~-~vl~gP~~a  268 (458)
                      |..++++++|+||-|++.  ....+++.++.+.+++++++.+.+.++...       .+.+.+..+..-+ .-...|.+.
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~-------~la~~~~~p~r~ig~HffnP~~~  154 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT-------SIANATTRQDRFAGLHFFNPVPV  154 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH-------HHHTTSSCGGGEEEEEECSSTTT
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccc-------hhhhhccCHhHEEeeccccccCc
Confidence            998999999999999996  457888999999999999998888777653       2333333221111 122344332


Q ss_pred             HHHhccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720          269 LELMNKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSD  308 (458)
Q Consensus       269 ~ei~~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~d  308 (458)
                      ..     ...++.+. -+++.++.+.++++..|.......|
T Consensus       155 ~~-----lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D  190 (192)
T d1f0ya2         155 MK-----LVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD  190 (192)
T ss_dssp             CC-----EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cc-----EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence            11     11122222 3678999999999999988776555

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.18  E-value=6.5e-11  Score=106.75  Aligned_cols=166  Identities=13%  Similarity=0.157  Sum_probs=110.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC-C-ccCCCCC--------CCCceEEeCCHHhh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN-C-RYFPEQK--------LPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~-~-~~~~~~~--------l~~~i~a~~~~~ea  196 (458)
                      .+||+|||+|.||+.+|..++.+|  ++|++||++++.+++..+.-.. . .......        ....+..+++.++ 
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-   80 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD-   80 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc-
Confidence            578999999999999999999999  9999999999876544322000 0 0000000        1123566667654 


Q ss_pred             cCCCCEEEEcCccc--cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEE--EEECcccHHHHh
Q 012720          197 LLGADYCLHAMPVQ--FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFI--ALSGPSFALELM  272 (458)
Q Consensus       197 ~~~aDiVilaVp~~--~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~--vl~gP~~a~ei~  272 (458)
                      +.++|+||.|+|..  ...+++.+|.+++++++++.+.+.++...       .+.+.+..+. .+.  -...|.+..   
T Consensus        81 ~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~-------~la~~~~~p~-r~~g~Hf~nP~~~~---  149 (186)
T d1wdka3          81 FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS-------LLAKALKRPE-NFVGMHFFNPVHMM---  149 (186)
T ss_dssp             GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH-------HHGGGCSCGG-GEEEEECCSSTTTC---
T ss_pred             ccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHH-------HHHHhccCch-heEeeccccCcccC---
Confidence            78999999999963  57778999999999999999888777763       2334333221 111  123343322   


Q ss_pred             ccCCeEEEEcc-CCHHHHHHHHHHHhcCCCeEEEcCC
Q 012720          273 NKLPTAMVVAS-KDRKLANAVQQLLASKHLRISTSSD  308 (458)
Q Consensus       273 ~g~~t~v~i~g-~d~e~~e~l~~lL~~~g~~v~~~~d  308 (458)
                        ....++.+. -+++.++.+..+++..|.......|
T Consensus       150 --~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d  184 (186)
T d1wdka3         150 --PLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVND  184 (186)
T ss_dssp             --CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             --CeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence              111222232 3678999999999999988766544

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.96  E-value=8.9e-10  Score=97.35  Aligned_cols=192  Identities=14%  Similarity=0.177  Sum_probs=100.0

Q ss_pred             CeEEEE-CcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVL-GGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~II-GaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      |||+|| |+|.||.++|..|+++|  |+|++|+|++++++.+.++..+..+      .... ...+........+....+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G--~~V~l~~R~~e~~~~l~~~i~~~~~------~~~~-~~~~~~~~~~~~~~~~~~   71 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRREEKAEAKAAEYRRIAG------DASI-TGMKNEDAAEACDIAVLT   71 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSHHHHHHHHHHHHHHHS------SCCE-EEEEHHHHHHHCSEEEEC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC------CceE-Eeeccccccchhhhhhhh
Confidence            799999 78999999999999999  9999999999988888764321111      1112 222334444567778888


Q ss_pred             CccccHHHHHHhhhhcCC------CCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEE---ECcccHHHHhccCCe
Q 012720          207 MPVQFSSSFLEGISDYVD------PGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIAL---SGPSFALELMNKLPT  277 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~------~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl---~gP~~a~ei~~g~~t  277 (458)
                      +......+.+..+.....      ..........+..........+.....+...  .....   .++....+.......
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  149 (212)
T d1jaya_          72 IPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE--KVVSALHTIPAARFANLDEKFDW  149 (212)
T ss_dssp             SCHHHHHHHHHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS--CEEECCTTCCHHHHHCTTCCCCE
T ss_pred             eeeeccchHHHHhhhhhccccccccccccccccccccccccchhhhhhhhhhhhh--cccccceeecHHHhcCcccccCc
Confidence            776554444433221111      1111121222222111122334444444321  11111   122222222222333


Q ss_pred             EEEEccCCHHHHHHHHH-HHhcCCCeEEEcCChHHHHHHHHHHHHHHHHHHHHhccc
Q 012720          278 AMVVASKDRKLANAVQQ-LLASKHLRISTSSDVTGVEIAGALKNVLAIAAGIVVGMN  333 (458)
Q Consensus       278 ~v~i~g~d~e~~e~l~~-lL~~~g~~v~~~~di~~~~~~kalkNi~ai~~G~~~~~k  333 (458)
                      ...+.+.+.+....+.+ +.+..|++.+..+.+.   ....++|+..+.+++....+
T Consensus       150 ~~~~a~~~~~a~~~~~~~~~~~~g~~~~~~G~l~---~a~~~e~~~~l~~~~~~~~~  203 (212)
T d1jaya_         150 DVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLS---NSRLVESLTPLILNIMRFNG  203 (212)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHSTTEEEEEEESGG---GHHHHHTHHHHHHHHHHHHT
T ss_pred             cceEEeCCHHHHHHHHHHHhhCCCeEEEEeChHH---HHHHHHhHHHHHHHHHHhCC
Confidence            44455556655555544 5567899887655543   23445565555555544433

>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Ketopantoate reductase PanE
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.3e-09  Score=91.46  Aligned_cols=119  Identities=10%  Similarity=0.070  Sum_probs=82.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcccCCCcH-HHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhh-hccCCCccc
Q 012720          308 DVTGVEIAGALKNVLAIAAGIVVGMNLGNNS-MAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLT-CFVNLSRNR  385 (458)
Q Consensus       308 di~~~~~~kalkNi~ai~~G~~~~~kl~~n~-~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t-~~~~~srn~  385 (458)
                      ||....|.|++.|+..++.+...++.++.-. ...++.+++.|+.+++++.|+........    +.+.. +........
T Consensus         1 dI~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~~~~~~----~~~~~~~~~~~~~~s   76 (124)
T d1ks9a1           1 NIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLR----DYVMQVIDATAENIS   76 (124)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHH----HHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCcHHHHH----HHHHHHHhccCCCCC
Confidence            6788999999999876666655555544211 13578899999999999999875421110    11111 111111123


Q ss_pred             hHHHHhhCCCChHHHHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHhcC
Q 012720          386 TVGVRLGSGEKLDDILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNE  441 (458)
Q Consensus       386 ~~g~~l~~g~~~e~~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~~~  441 (458)
                      ++.+|+.+|+++| +          ...+|+++++|+++|+++|+++++|++++..
T Consensus        77 SM~qD~~~gr~tE-i----------d~i~G~vv~~a~~~gi~tP~~~~l~~lik~~  121 (124)
T d1ks9a1          77 SMLQDIRALRHTE-I----------DYINGFLLRRARAHGIAVPENTRLFEMVKRK  121 (124)
T ss_dssp             HHHHHHHTTCCCS-G----------GGTHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCcch-H----------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            5678888888875 2          3667999999999999999999999999754

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=98.93  E-value=8.5e-11  Score=109.86  Aligned_cols=168  Identities=13%  Similarity=0.086  Sum_probs=113.5

Q ss_pred             CCeEEEECcch--HHHHHHH------HHHhcCCCCeEEEEeCCHHHH-HHHHhhcCCCccCCCC----------------
Q 012720          127 TNKVVVLGGGS--FGTAMAA------HVANKKSQLKVYMLMRDPAVC-QSINEKHCNCRYFPEQ----------------  181 (458)
Q Consensus       127 ~~kI~IIGaG~--mG~~iA~------~La~aG~~~~V~v~~r~~~~~-e~l~~~g~~~~~~~~~----------------  181 (458)
                      ..++.++|+|.  ||..++.      .+++.|  +.|++.|.+++++ +.+.+.+. ..|.++.                
T Consensus        40 ~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g--~~v~~~d~d~~~v~~~~~~g~~-~i~~p~l~~~v~~~~~~~~~~~~  116 (242)
T d2b0ja2          40 THSSITYGAELLHLVPDVKEVIVSDPCFAEEP--GLVVIDEFDPKEVMEAHLSGNP-ESIMPKIREVVKAKAKELPKPPK  116 (242)
T ss_dssp             CCHHHHHHHHHHHHCTTCCEEEEECGGGGSSS--EEEECCCSCHHHHHHHHHTTCG-GGTHHHHHHHHHHHHHTSCCTTT
T ss_pred             eeeeeeeeecHHhhhhchhhhhccchhhhhcC--CeEEEEeCCHHHHHHHHhcCCc-hhhcchHHHHHHHHHHhccCCcc
Confidence            35788999997  7766766      688888  9999999997653 44444221 1111110                


Q ss_pred             ---C--C--CCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          182 ---K--L--PENVIATTDAKTALLGADYCLHAMPV-QFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       182 ---~--l--~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                         .  .  ..++++++|+.|+++++|+||+|||. ..+.+++++|.++++++++|++++ ++.+...    ..+.+.+.
T Consensus       117 ~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~S-Ti~~~~~----~~l~e~l~  191 (242)
T d2b0ja2         117 ACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHAC-TIPTTKF----AKIFKDLG  191 (242)
T ss_dssp             EEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECS-SSCHHHH----HHHHHHTT
T ss_pred             chhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecC-CCcHHHH----HHHHHhcc
Confidence               0  0  13578899999999999999999986 568999999999999999999988 4554332    23333333


Q ss_pred             CCCCCEEEEECcccHHHHhccCCeEEEEccCCHHHHHHHHHHHhcCCCeEEE
Q 012720          254 NPRQPFIALSGPSFALELMNKLPTAMVVASKDRKLANAVQQLLASKHLRIST  305 (458)
Q Consensus       254 ~~~~~~~vl~gP~~a~ei~~g~~t~v~i~g~d~e~~e~l~~lL~~~g~~v~~  305 (458)
                      .  ..+.++.++..+.....+ ...+..+..+++.++++.++|++.|..++.
T Consensus       192 ~--kgi~vi~~hp~a~pe~~g-~~li~~~~aseE~iekv~elles~Gk~~~v  240 (242)
T d2b0ja2         192 R--EDLNITSYHPGCVPEMKG-QVYIAEGYASEEAVNKLYEIGKIARGKAFK  240 (242)
T ss_dssp             C--TTSEEEECBCSSCTTTCC-CEEEEESSSCHHHHHHHHHHHHHHHSCEEE
T ss_pred             c--CCCEEECCCccCcCcccc-ceEEecCCCCHHHHHHHHHHHHHHCCCeEe
Confidence            2  123445443222111122 344556778899999999999988876654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.84  E-value=1.2e-09  Score=98.60  Aligned_cols=134  Identities=13%  Similarity=0.207  Sum_probs=92.9

Q ss_pred             cCCcccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012720           92 RDGRDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (458)
Q Consensus        92 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~  171 (458)
                      +-...+|.++.|.|.+   |.+...  .+.++.  .++|+|||+|++|..+|.++..-|  .+|.+|++...........
T Consensus        19 ~i~~~~~~~r~g~w~~---~~~~~~--~~~~l~--g~tvgIiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~~~~~~~~   89 (191)
T d1gdha1          19 RAGEGEKMIRTRSWPG---WEPLEL--VGEKLD--NKTLGIYGFGSIGQALAKRAQGFD--MDIDYFDTHRASSSDEASY   89 (191)
T ss_dssp             THHHHHHHHHTTCCCC---CCTTTT--CBCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCc---CCcccc--ccceec--ccceEEeecccchHHHHHHHHhhc--cccccccccccccchhhcc
Confidence            3445677788887765   433221  233443  579999999999999999998766  9999999865322222221


Q ss_pred             cCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHH
Q 012720          172 HCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIP  249 (458)
Q Consensus       172 g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~  249 (458)
                      +              .....+++++++.+|+|++++|. ..++.++ ++....++++.++|+++.|-..++ +.+.+.+.
T Consensus        90 ~--------------~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde-~aL~~aL~  154 (191)
T d1gdha1          90 Q--------------ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN-ELVVAALE  154 (191)
T ss_dssp             T--------------CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH-HHHHHHHH
T ss_pred             c--------------ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh-HHHHHHHH
Confidence            1              12335788999999999999995 4566666 346778999999999999876654 23334443

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.81  E-value=6e-09  Score=93.92  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=74.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCC-----CCCceEEeCCHHhhcCCCCE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQK-----LPENVIATTDAKTALLGADY  202 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~-----l~~~i~a~~~~~ea~~~aDi  202 (458)
                      |||+|||+|.+|.++|..|+ .|  ++|++||.++++++.+++ |..+.+.++..     ...+.....+...+..++|+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g--~~V~g~Din~~~v~~l~~-g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~i   76 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQ--NEVTIVDILPSKVDKINN-GLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAEL   76 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TT--SEEEEECSCHHHHHHHHT-TCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCChhHHHHHHHHH-CC--CcEEEEECCHHHHHHHhh-cccccchhhHHHHhhhhhhhhhccchhhhhhhcccc
Confidence            79999999999999998886 48  999999999999999976 33322211110     12345566676677789999


Q ss_pred             EEEcCccc-----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhh
Q 012720          203 CLHAMPVQ-----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLR  242 (458)
Q Consensus       203 VilaVp~~-----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~  242 (458)
                      +++|||+.           .+..+.+.+... .++.+++.-+ .+.+.+.+
T Consensus        77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii~S-tv~pgt~~  125 (196)
T d1dlja2          77 VIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLIIKS-TIPIGFIT  125 (196)
T ss_dssp             EEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEECS-CCCTTHHH
T ss_pred             ccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEeee-ecCceeee
Confidence            99999963           133333444443 3455555444 67776543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.78  E-value=3.2e-09  Score=96.01  Aligned_cols=132  Identities=11%  Similarity=0.104  Sum_probs=89.6

Q ss_pred             cccchhhHHhhhhcccccchhhc--cccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012720           95 RDRRKIVKVAWEKLVRWSRTWRS--KAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (458)
Q Consensus        95 ~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g  172 (458)
                      ..++.++.|.|.+-.   ..+..  ..+.++.  .++|||||+|++|..+|..|..-|  .+|.+|++....- .....+
T Consensus        20 ~~~~~~~~g~w~~~~---~~~~~~~~~~~eL~--gktvgIiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~~-~~~~~~   91 (193)
T d1mx3a1          20 WLHQALREGTRVQSV---EQIREVASGAARIR--GETLGIIGLGRVGQAVALRAKAFG--FNVLFYDPYLSDG-VERALG   91 (193)
T ss_dssp             HHHHHHHTTCCCCSH---HHHHHHTTTCCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTTSCTT-HHHHHT
T ss_pred             HHHHHHHcCCccccc---ccccccccCceeee--CceEEEeccccccccceeeeeccc--cceeeccCccccc-chhhhc
Confidence            445667777776521   11111  1245555  579999999999999999998666  9999999865321 111111


Q ss_pred             CCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHH
Q 012720          173 CNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIP  249 (458)
Q Consensus       173 ~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~  249 (458)
                                    +....++++.++.+|+|++++|. .....++ .+....++++.++|+++.|-..++ +.+.+.+.
T Consensus        92 --------------~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde-~aL~~aL~  155 (193)
T d1mx3a1          92 --------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDE-KALAQALK  155 (193)
T ss_dssp             --------------CEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCH-HHHHHHHH
T ss_pred             --------------cccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcH-HHHHHHHH
Confidence                          23445889999999999999995 4455555 345677899999999999876653 23334443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.76  E-value=9.1e-09  Score=93.22  Aligned_cols=105  Identities=14%  Similarity=0.141  Sum_probs=77.9

Q ss_pred             hhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720          115 WRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       115 ~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      |....+.++.  .++|||||.|++|..+|.+|..=|  .+|.+||+.......  ..+.               ...+++
T Consensus        33 w~~~~g~el~--gk~vgIiG~G~IG~~va~~l~~fg--~~V~~~d~~~~~~~~--~~~~---------------~~~~l~   91 (197)
T d1j4aa1          33 WAPTIGREVR--DQVVGVVGTGHIGQVFMQIMEGFG--AKVITYDIFRNPELE--KKGY---------------YVDSLD   91 (197)
T ss_dssp             CTTCCBCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCHHHH--HTTC---------------BCSCHH
T ss_pred             cCCCcCcccc--CCeEEEecccccchhHHHhHhhhc--ccccccCcccccccc--ccee---------------eecccc
Confidence            3444466665  579999999999999999998666  999999977543221  1111               123788


Q ss_pred             hhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          195 TALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       195 ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      +.++.+|+|++++|. ..+..++ .+....++++.++|+++.|-..++
T Consensus        92 ~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  139 (197)
T d1j4aa1          92 DLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDT  139 (197)
T ss_dssp             HHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCH
T ss_pred             ccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhh
Confidence            899999999999995 4455555 445677899999999999866653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.74  E-value=4.6e-09  Score=93.94  Aligned_cols=101  Identities=21%  Similarity=0.237  Sum_probs=76.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|.+|..+|..+..-|  .+|.+|+|++..       +.             .....+++++++.+|+|+++
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g--~~v~~~d~~~~~-------~~-------------~~~~~~l~ell~~sDiv~~~   99 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALG--AQVRGFSRTPKE-------GP-------------WRFTNSLEEALREARAAVCA   99 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTT--CEEEEECSSCCC-------SS-------------SCCBSCSHHHHTTCSEEEEC
T ss_pred             CceEEEeccccccccceeeeeccc--cccccccccccc-------cc-------------eeeeechhhhhhccchhhcc
Confidence            579999999999999999999877  999999987521       10             11234788999999999999


Q ss_pred             Ccc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 012720          207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       207 Vp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~  250 (458)
                      +|. .....++ .+....++++.++|+++.|-..++ +.+.+.+.+
T Consensus       100 ~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~-~aL~~aL~~  144 (181)
T d1qp8a1         100 LPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR-DGVLRILKE  144 (181)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH-HHHHHHHHH
T ss_pred             cccccccccccccceeeeccccceEEeccccccccc-hhhhhhccc
Confidence            995 4555555 456778899999999998855543 233444443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.71  E-value=1.7e-08  Score=90.72  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=75.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||+|++|..+|.+|..-|  .+|.+|++...........+              +....++++.++.+|+|+++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~~~~~~~~~--------------~~~~~~l~~~l~~sD~v~~~  107 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFD--VHLHYTDRHRLPESVEKELN--------------LTWHATREDMYPVCDVVTLN  107 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGT--CEEEEECSSCCCHHHHHHHT--------------CEECSSHHHHGGGCSEEEEC
T ss_pred             ccceeeccccccchhhhhhhhccC--ceEEEEeecccccccccccc--------------ccccCCHHHHHHhccchhhc
Confidence            579999999999999999998767  89999998643222332222              23445888999999999999


Q ss_pred             Ccc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       207 Vp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      +|. ...+.++ .+....++++.++|+++.|-..++
T Consensus       108 ~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~  143 (188)
T d2naca1         108 CPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDR  143 (188)
T ss_dssp             SCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             ccccccchhhhHHHHHHhCCCCCEEEecCchhhhhH
Confidence            995 4566666 456778899999999999866653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=2e-08  Score=89.99  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=76.7

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      +.++.  .++|+|||.|.+|..+|.++..-|  .+|.+|++.....+.. ..+              +. ..+.+|+++.
T Consensus        39 ~~~l~--~k~vgiiG~G~IG~~va~~~~~fg--~~v~~~d~~~~~~~~~-~~~--------------~~-~~~l~ell~~   98 (184)
T d1ygya1          39 GTEIF--GKTVGVVGLGRIGQLVAQRIAAFG--AYVVAYDPYVSPARAA-QLG--------------IE-LLSLDDLLAR   98 (184)
T ss_dssp             BCCCT--TCEEEEECCSHHHHHHHHHHHTTT--CEEEEECTTSCHHHHH-HHT--------------CE-ECCHHHHHHH
T ss_pred             ccccc--ceeeeeccccchhHHHHHHhhhcc--ceEEeecCCCChhHHh-hcC--------------ce-eccHHHHHhh
Confidence            34444  579999999999999999998655  9999999876443222 212              12 2378899999


Q ss_pred             CCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          200 ADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       200 aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      ||+|++++|. ..++.++ .+....+++++++|+++.|-..++
T Consensus        99 sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde  141 (184)
T d1ygya1          99 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDE  141 (184)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCH
T ss_pred             CCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhh
Confidence            9999999995 5566666 356778999999999999977653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.66  E-value=5e-09  Score=95.12  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=83.6

Q ss_pred             cccchhhHHhhhhcccccchhhccccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCC
Q 012720           95 RDRRKIVKVAWEKLVRWSRTWRSKAKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCN  174 (458)
Q Consensus        95 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~  174 (458)
                      ..++.++.+.|++..       .+.+.++.  .++|||||.|++|..+|.+|..=|  .+|.+||+....       ...
T Consensus        22 ~~~~~~~~g~w~~~~-------~~~~~~l~--~ktvgIiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~-------~~~   83 (199)
T d1dxya1          22 KVQAQLQAGDYEKAG-------TFIGKELG--QQTVGVMGTGHIGQVAIKLFKGFG--AKVIAYDPYPMK-------GDH   83 (199)
T ss_dssp             HHHHHHHTTCHHHHT-------CCCCCCGG--GSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCS-------SCC
T ss_pred             HHHHHHHhCCCCccc-------Cccccccc--ceeeeeeecccccccccccccccc--eeeeccCCccch-------hhh
Confidence            455666777676411       12344555  579999999999999999998666  999999986431       000


Q ss_pred             CccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCcc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          175 CRYFPEQKLPENVIATTDAKTALLGADYCLHAMPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       175 ~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                                ..+. ..++++.++.+|+|++++|. .....++ .+....+++++++|+++.|-..++
T Consensus        84 ----------~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          84 ----------PDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             ----------TTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             ----------cchh-HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhh
Confidence                      0122 23788989999999999995 4555555 345677899999999999876653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.65  E-value=1.2e-07  Score=81.50  Aligned_cols=107  Identities=15%  Similarity=0.139  Sum_probs=71.2

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |.+.|||+|||+|.+|..+|..|+..|...+|.++|+++++++.....-.+....    .........|.++ +++||+|
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~----~~~~~~~~~d~~~-~~~adiv   76 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAF----TAPKKIYSGEYSD-CKDADLV   76 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGG----SCCCEEEECCGGG-GTTCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccc----cCCceEeeccHHH-hccccEE
Confidence            4557899999999999999999999885568999999987654332210000000    1123445667765 6999999


Q ss_pred             EEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          204 LHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       204 ilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      |++....                .++++.++|.++ .++.+++..+|-.
T Consensus        77 vitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNPv  124 (146)
T d1ez4a1          77 VITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPV  124 (146)
T ss_dssp             EECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCcc
Confidence            9987432                133455556654 4567888888743

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=6.6e-08  Score=86.72  Aligned_cols=94  Identities=17%  Similarity=0.226  Sum_probs=73.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|+|||.|.+|..+|.++..-|  .+|.+|++.....    .              .......++++.++.+|+|+++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg--~~v~~~d~~~~~~----~--------------~~~~~~~~l~ell~~sDii~i~  103 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLG--MYVYFYDIENKLP----L--------------GNATQVQHLSDLLNMSDVVSLH  103 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCC----C--------------TTCEECSCHHHHHHHCSEEEEC
T ss_pred             ceEEEEeecccchhhhhhhccccc--ceEeeccccccch----h--------------hhhhhhhhHHHHHhhccceeec
Confidence            579999999999999999998777  9999999864210    0              0112335788999999999999


Q ss_pred             Ccc-ccHHHHH-HhhhhcCCCCCeEEEeccCCCcch
Q 012720          207 MPV-QFSSSFL-EGISDYVDPGLPFISLSKGLELNT  240 (458)
Q Consensus       207 Vp~-~~v~~vl-~~i~~~l~~~~ivV~~snGi~~~t  240 (458)
                      +|. .....++ ++....++++.++|+++.|-..++
T Consensus       104 ~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde  139 (188)
T d1sc6a1         104 VPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI  139 (188)
T ss_dssp             CCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCH
T ss_pred             ccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhh
Confidence            994 5565555 456777899999999999876653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.53  E-value=1.6e-07  Score=81.48  Aligned_cols=122  Identities=19%  Similarity=0.227  Sum_probs=78.4

Q ss_pred             hhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          123 ILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       123 ~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .|.+.+||+|||+|.+|..+|..|+..+. .++.++|.+++.++.....-.+...+  ......+..+++.+++++++|+
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~adi   79 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSV--VDTNVSVRAEYSYEAALTGADC   79 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHH--TTCCCCEEEECSHHHHHTTCSE
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccc--cCCeeEEeccCchhhhhcCCCe
Confidence            46667899999999999999999998884 48999998876554332211000000  0112235566777788899999


Q ss_pred             EEEcCcc-----------c----------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          203 CLHAMPV-----------Q----------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       203 VilaVp~-----------~----------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      |+++...           .          -++++++++.++- ++.+++..+|-++     .+...+.+..|
T Consensus        80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPvd-----~lt~~~~~~sg  145 (154)
T d1pzga1          80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLD-----CMVKVMCEASG  145 (154)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHH-----HHHHHHHHHHC
T ss_pred             EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcHH-----HHHHHHHHHhC
Confidence            9997731           0          1445555666554 4678888887543     33344445444

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.43  E-value=5.7e-07  Score=75.42  Aligned_cols=97  Identities=11%  Similarity=0.129  Sum_probs=66.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh-cCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK-HCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~-g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil  205 (458)
                      |||.|+|+|.+|..+|..|.+.|  ++|++++.++++++++.+. +.. .+.++..-+      ..++++ ++++|.++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~~~~~~-vi~Gd~~~~------~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAEIDAL-VINGDCTKI------KTLEDAGIEDADMYIA   71 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCSSE-EEESCTTSH------HHHHHTTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CCcceecCChhhhhhhhhhhhhh-hccCcccch------hhhhhcChhhhhhhcc
Confidence            79999999999999999999999  9999999999999988765 211 111110000      012222 578999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++.+...-++..+...+.+..+|+-+.
T Consensus        72 ~t~~d~~N~~~~~~~k~~~~~~iI~~~~   99 (132)
T d1lssa_          72 VTGKEEVNLMSSLLAKSYGINKTIARIS   99 (132)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             cCCcHHHHHHHHHHHHHcCCceEEEEec
Confidence            9998654434444445566665554433

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.41  E-value=5.6e-07  Score=76.76  Aligned_cols=105  Identities=16%  Similarity=0.162  Sum_probs=68.4

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.+|..+|..|+..+.-.++.++|+++++.+............  ......+..+++. ++++++|+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~--~~~~~~i~~~~~~-~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV--GLFDTKVTGSNDY-ADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH--HTCCCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccch--hcccceEEecCCH-HHhcCCeEEEEEE
Confidence            799999999999999999999875468999999887654332211110000  0112234555665 4589999999986


Q ss_pred             cc-----c-----------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          208 PV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       208 p~-----~-----------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      -.     .           -+.++.+.|.++- |+.+++..+|-+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPv  121 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNPL  121 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSSH
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCCh
Confidence            31     1           1344555666654 567888888743

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.40  E-value=2.9e-07  Score=80.13  Aligned_cols=97  Identities=13%  Similarity=0.203  Sum_probs=66.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||.|||+|.||..+|..|+++|  |+|++|+|+.++++.+.+........ ..    ........++.+...|+++.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g--~~V~v~dr~~~~a~~l~~~~~~~~~~-~~----~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTLESAKKLSAGVQHSTPI-SL----DVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESCHHHHHHHHTTCTTEEEE-EC----CTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECChHHHHHHHhcccccccc-cc----cccchhhhHhhhhccceeEee
Confidence            479999999999999999999999  99999999999999988753211100 00    000011234456789999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|......+......   .+..++++.
T Consensus        75 ~~~~~~~~~~~~~~~---~~~~~~~~~   98 (182)
T d1e5qa1          75 IPYTFHATVIKSAIR---QKKHVVTTS   98 (182)
T ss_dssp             SCGGGHHHHHHHHHH---HTCEEECSS
T ss_pred             ccchhhhHHHHHHHh---hccceeecc
Confidence            998766555544433   245566554

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.38  E-value=5.4e-07  Score=78.42  Aligned_cols=95  Identities=13%  Similarity=0.160  Sum_probs=68.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|.|||+|.||..++..|...|. .+|++++|+.++++.+.+..- .          .....++..+.+.++|+||.|
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~-~----------~~~~~~~~~~~l~~~Divi~a   91 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLG-G----------EAVRFDELVDHLARSDVVVSA   91 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHT-C----------EECCGGGHHHHHHTCSEEEEC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhh-c----------ccccchhHHHHhccCCEEEEe
Confidence            5799999999999999999999982 379999999999888876421 0          112234667778899999999


Q ss_pred             Ccccc---HHHHHHhhhhcC--CCCCeEEEec
Q 012720          207 MPVQF---SSSFLEGISDYV--DPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~---v~~vl~~i~~~l--~~~~ivV~~s  233 (458)
                      +.+..   ..+.++.....-  .+..++|+++
T Consensus        92 tss~~~ii~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          92 TAAPHPVIHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             CSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             cCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence            98642   345554443322  2344788875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=7.8e-07  Score=75.72  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=71.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.+|..+|..|+..+.-.++.++|+++++++.......+...+    .+.....+.+. ++++++|+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~----~~~~~~~~~~~-~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPF----TRRANIYAGDY-ADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGG----SCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccc----cccccccCCcH-HHhcCCCEEEEec
Confidence            799999999999999999998885568999999987655332211100000    01112233454 4589999999986


Q ss_pred             cc-----cc-----------HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          208 PV-----QF-----------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       208 p~-----~~-----------v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      -.     +.           +.++.+.|.++- |+.+++..+|-++     .+...+.+..|
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPvd-----~~t~~~~k~sg  131 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVD-----VLTYFFLKESG  131 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH-----HHHHHHHHHHT
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcHH-----HHHHHHHHHHC
Confidence            42     11           334445555554 5678888887443     33444545433

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.37  E-value=5.2e-07  Score=75.59  Aligned_cols=96  Identities=10%  Similarity=0.137  Sum_probs=65.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVila  206 (458)
                      +++.|||+|.+|..+|..|.+.|  ++|++++.+++.++++.+.+.... .++..-+      +.++++ +.++|.+|++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d~~~~~~~~~~~~~~~-~gd~~~~------~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYATHAV-IANATEE------NELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHHTTTTCSEEE-ECCTTCT------THHHHHTGGGCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCcHHHHHHHHHhCCcce-eeecccc------hhhhccCCccccEEEEE
Confidence            47999999999999999999999  999999999999998877653222 1111111      122333 6789999999


Q ss_pred             CccccHHH-HHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSS-FLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~-vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++..... ++..+....+.. .++...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~-~iiar~   98 (134)
T d2hmva1          72 IGANIQASTLTTLLLKELDIP-NIWVKA   98 (134)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             cCchHHhHHHHHHHHHHcCCC-cEEeec
Confidence            99764333 334445555544 344443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.36  E-value=1e-06  Score=75.14  Aligned_cols=105  Identities=10%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |||+|||+|.+|..+|..|+..|.-.++.++|++++.++.....-.+.  .+.......+....|.+ .++++|+|+++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~--~~~~~~~~~i~~~~d~~-~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHA--AAGIDKYPKIVGGADYS-LLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH--HHTTTCCCEEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhh--ccccCCCCccccCCCHH-HhccccEEEEec
Confidence            799999999999999999998874357999999987654321110000  00001112356667775 589999999987


Q ss_pred             ccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          208 PVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       208 p~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ...                -+.++.+.+.++ .++.+++..+|-+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNPv  121 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNPM  121 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSSH
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCCh
Confidence            421                133344445554 4577888888843

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.34  E-value=1.5e-06  Score=74.62  Aligned_cols=116  Identities=13%  Similarity=0.096  Sum_probs=73.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVil  205 (458)
                      ..||+|||+|.+|..+|..|+..+...++.++|++++.++.....-.+...    .....+.. ..+. +.+++||+||+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~----~~~~~~~~~~~d~-~~l~daDvvvi   80 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKV----FAPKPVDIWHGDY-DDCRDADLVVI   80 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTT----SSSSCCEEEECCG-GGTTTCSEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCcc----ccCCCeEEEECCH-HHhccceeEEE
Confidence            469999999999999999999988445899999998765433221000000    01112333 3455 55899999999


Q ss_pred             cCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       206 aVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      +....                -++++.+.|.++- |+.+++..+|-++     .+...+.+..|
T Consensus        81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd-----~~t~~~~k~sg  138 (148)
T d1ldna1          81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVD-----ILTYATWKFSG  138 (148)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHH-----HHHHHHHHHHT
T ss_pred             ecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccH-----HHHHHHHHHHC
Confidence            76531                1345556666664 4667887887543     33444555444

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.31  E-value=9.8e-07  Score=79.60  Aligned_cols=107  Identities=17%  Similarity=0.140  Sum_probs=78.7

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcC----CCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKK----SQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG----~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      .++....++||+|||.|+-|.+-|.+|.+.|    .+.+|++--|.. ...+..++.|....         +..+ -+.+
T Consensus        37 ~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~---------~~~v-~~v~  106 (226)
T d1qmga2          37 LPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE---------NGTL-GDMW  106 (226)
T ss_dssp             HHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGG---------GTCE-EEHH
T ss_pred             hHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccC---------CCcc-cCHH
Confidence            3456666789999999999999999999965    125577665544 33455556664311         1111 1567


Q ss_pred             hhcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          195 TALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       195 ea~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+++.+|+|++.+|++...+++++|.+++++|..+...- |+.
T Consensus       107 EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaH-GFn  148 (226)
T d1qmga2         107 ETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSH-GFL  148 (226)
T ss_dssp             HHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESS-SHH
T ss_pred             HHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecc-hhh
Confidence            889999999999999999999999999999999876433 654

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.31  E-value=1.2e-06  Score=76.43  Aligned_cols=93  Identities=23%  Similarity=0.324  Sum_probs=75.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||.|+-|.+=|.+|.+.|  .+|++--|... ..+...+.|.              .+ -+.+|+++.+|+|++
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG--~~V~VGLr~gs~s~~~A~~~Gf--------------~v-~~~~eA~~~aDiim~   78 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSG--VDVTVGLRSGSATVAKAEAHGL--------------KV-ADVKTAVAAADVVMI   78 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHTTC--------------EE-ECHHHHHHTCSEEEE
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcC--CCEEEEcCCCCccHHHHhhhcc--------------cc-ccHHHHhhhcCeeee
Confidence            478999999999999999999999  89998777653 3445555553              22 278899999999999


Q ss_pred             cCccccHHHHHH-hhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQFSSSFLE-GISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~~v~~vl~-~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+|+....++++ .|.+++++|+.+.... |+.
T Consensus        79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaH-Gfn  110 (182)
T d1np3a2          79 LTPDEFQGRLYKEEIEPNLKKGATLAFAH-GFS  110 (182)
T ss_dssp             CSCHHHHHHHHHHHTGGGCCTTCEEEESC-CHH
T ss_pred             ecchHHHHHHHHHhhhhhcCCCcEEEEec-cce
Confidence            999999999995 6999999999876443 654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.30  E-value=2.8e-06  Score=72.75  Aligned_cols=116  Identities=12%  Similarity=0.148  Sum_probs=71.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      +||+|||+|.+|+.+|..|+..|.-.++.++|+++++++.....-.+..  .....+..+ .+.+.++ +++||+||++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~--~~~~~~~~~-~~~d~~~-l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM--ANLEAHGNI-VINDWAA-LADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG--GGSSSCCEE-EESCGGG-GTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc--cccCCccce-eccCHHH-hccccEEEEec
Confidence            6999999999999999999988744589999999886543322110000  001112222 3456654 79999999985


Q ss_pred             ccc--------------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          208 PVQ--------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       208 p~~--------------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      ...                    -++++.+.+.++ .++.+++..+|-++     .+...+.+..|
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPvD-----~~t~~~~k~sg  137 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPVD-----VITALFQHVTG  137 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcHH-----HHHHHHHHHhC
Confidence            421                    133444445543 46778888887543     33444545444

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.27  E-value=1.4e-07  Score=79.68  Aligned_cols=96  Identities=21%  Similarity=0.218  Sum_probs=69.5

Q ss_pred             HHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccch-HHHHhh-----CCCChHHH
Q 012720          327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRT-VGVRLG-----SGEKLDDI  400 (458)
Q Consensus       327 G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~-~g~~l~-----~g~~~e~~  400 (458)
                      |.+..+|+.+|.+......++.|++.+|++.|+++++++++...+       +..++-+. .+..+.     -+++.+  
T Consensus         3 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~-------~~~S~~~~~~~~~~~~~~~~~~f~~~--   73 (133)
T d1vpda1           3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGG-------LAGSTVLDAKAPMVMDRNFKPGFRID--   73 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTS-------TTCCHHHHHHHHHHHTTCCCCSSBHH--
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc-------cccchhhhhccchhhhccCCCCchHH--
Confidence            556677888999999999999999999999999999998752111       00011110 111222     233333  


Q ss_pred             HhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh
Q 012720          401 LSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID  439 (458)
Q Consensus       401 ~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~  439 (458)
                              ...||++++.++|++.|+++|+.+.+.+++.
T Consensus        74 --------l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~  104 (133)
T d1vpda1          74 --------LHIKDLANALDTSHGVGAQLPLTAAVMEMMQ  104 (133)
T ss_dssp             --------HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence                    3469999999999999999999999999884

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.27  E-value=5.9e-07  Score=75.80  Aligned_cols=103  Identities=16%  Similarity=0.139  Sum_probs=71.6

Q ss_pred             HHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccccc--CCcch-hhhhccCCC---ccchHHHHhhCCCChHHH
Q 012720          327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGDI-MLTCFVNLS---RNRTVGVRLGSGEKLDDI  400 (458)
Q Consensus       327 G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~--g~gd~-~~t~~~~~s---rn~~~g~~l~~g~~~e~~  400 (458)
                      |.+..+|+.+|.+......+++|++.++++.|+++++++++.  +.+.. +........   .......+...+++++. 
T Consensus         3 GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l-   81 (134)
T d3cuma1           3 GAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQL-   81 (134)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHH-
Confidence            556677889999999999999999999999999999998862  22221 111111000   00011222333455542 


Q ss_pred             HhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh
Q 012720          401 LSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID  439 (458)
Q Consensus       401 ~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~  439 (458)
                               ..||+++++++|++.|+++|+.+.+.+++.
T Consensus        82 ---------~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~  111 (134)
T d3cuma1          82 ---------MAKDLGLAQEAAQASASSTPMGSLALSLYR  111 (134)
T ss_dssp             ---------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence                     359999999999999999999998888774

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=1.2e-06  Score=77.13  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             CCeEEEECcchHHHHHHH--HHHhc-CC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGGGSFGTAMAA--HVANK-KS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~--~La~a-G~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .|||+|||+|++|.+.+.  .|+.. +. ..++.++|+++++++........  +......+.++..++|.+|++++||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~--~~~~~~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKK--YVEEVGADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHH--HHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHH--HHHhcCCCeEEEEeCChhhcccCCCe
Confidence            489999999999976443  24332 11 15999999999876643322110  00111223457788899999999999


Q ss_pred             EEEcCcc
Q 012720          203 CLHAMPV  209 (458)
Q Consensus       203 VilaVp~  209 (458)
                      |++++-.
T Consensus        80 Vv~~~~~   86 (171)
T d1obba1          80 VINTAMV   86 (171)
T ss_dssp             EEECCCT
T ss_pred             Eeeeccc
Confidence            9998754

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.26  E-value=1.2e-07  Score=80.11  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             HHHhcccCCCcHHHHHHHHHHHHHHHHHHHcCCCcccccccc--CCcchhhhhccCCCccchHHHHhh-----CCCChHH
Q 012720          327 GIVVGMNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLS--GTGDIMLTCFVNLSRNRTVGVRLG-----SGEKLDD  399 (458)
Q Consensus       327 G~~~~~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~--g~gd~~~t~~~~~srn~~~g~~l~-----~g~~~e~  399 (458)
                      |.+..+|+.+|.+......++.|++.+|++.|+++++++++.  +.+......       ......+.     .+++.+ 
T Consensus         2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~-------~~~p~~~~~~~~~~~f~~~-   73 (132)
T d2cvza1           2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATE-------NLIPQRVLTRAFPKTFALG-   73 (132)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHH-------HTHHHHTTTSCCCCSSBHH-
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHhhhhhhHHH-
Confidence            455667888999999999999999999999999999998752  222211000       00111122     223333 


Q ss_pred             HHhhccccchhhhHHHHHHHHHHHcCCCCcHHHHHHHHHh
Q 012720          400 ILSSMNQVAEGVSTAGAVIALAQKYNVKMPVLTAVARIID  439 (458)
Q Consensus       400 ~~~~~~~~~eg~kd~g~v~~lA~~~gv~~P~~~~v~~ll~  439 (458)
                               ...||++++.++|+++|+++|+.+.+.+++.
T Consensus        74 ---------~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~  104 (132)
T d2cvza1          74 ---------LLVKDLGIAMGVLDGEKAPSPLLRLAREVYE  104 (132)
T ss_dssp             ---------HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred             ---------HHhhHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence                     3459999999999999999999999988884

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.25  E-value=2.6e-06  Score=72.51  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=68.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCc-cCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR-YFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~-~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +||+|||+|.+|+.+|..|+..+. .++.++|.+++.++.....-.+.. +.   .....+..+.|.++ ++++|+||++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l-~dl~l~D~~~~~~~~~~~Dl~~~~~~~---~~~~~i~~~~d~~~-~~~advvvit   76 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIE---GFDVRVTGTNNYAD-TANSDVIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSSSSHHHHHHHHHHTTHHHH---TCCCCEEEESCGGG-GTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCc-ceEEEEeeccccchhHHHHhhcccccc---CCCCEEEecCcHHH-hcCCCEEEEe
Confidence            599999999999999999998874 489999988765443322110000 00   01224566778776 6899999998


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ....                .+++++++|.++- ++.+++..+|-++
T Consensus        77 ag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNPvD  122 (142)
T d1uxja1          77 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLD  122 (142)
T ss_dssp             CSCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSSHH
T ss_pred             eeccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCchH
Confidence            8431                1344555666654 4667777887443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.16  E-value=6.4e-06  Score=70.15  Aligned_cols=114  Identities=11%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh--cCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK--HCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~--g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .||+|||+|.+|+.+|..|+..|.-.++.++|+++++++.....  +.. .+.+    ...+...++.++ ++++|+|++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~-~~~~----~~~i~~~~~~~~-~~daDvVVi   75 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SFYP----TVSIDGSDDPEI-CRDADMVVI   75 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG-GGST----TCEEEEESCGGG-GTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc-ccCC----CceeecCCCHHH-hhCCcEEEE
Confidence            48999999999999999999988545899999998765432211  110 0111    123455667654 789999999


Q ss_pred             cCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          206 AMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       206 aVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      +.-..                -++++..+|.++- ++.+++..+|-++     .+...+.+..|
T Consensus        76 taG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvD-----vmt~~~~~~sg  133 (143)
T d1llda1          76 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPVD-----IATHVAQKLTG  133 (143)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSHH-----HHHHHHHHHHT
T ss_pred             ecccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCchH-----HHHHHHHHHHC
Confidence            87431                1333445555553 5667777887443     34445555444

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.14  E-value=6.1e-06  Score=70.18  Aligned_cols=114  Identities=11%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~~~aDiVila  206 (458)
                      .||+|||+|.+|+.+|..|+..+.-.++.++|+++++++....+-.+.     ..+....... .+. +.++++|+|+++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~-----~~~~~~~~~~~~~~-~~~~~adivvit   75 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG-----LPFMGQMSLYAGDY-SDVKDCDVIVVT   75 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTS-----CCCTTCEEEC--CG-GGGTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccC-----cccCCCeeEeeCcH-HHhCCCceEEEe
Confidence            589999999999999999999885458999999987543222111010     1111123333 344 457999999998


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      .-..                -++++.+.+.++- |+.+++..+|-++     .+...+.+..|
T Consensus        76 ag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPvd-----v~t~~~~k~sg  132 (142)
T d1y6ja1          76 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNPVD-----IITYMIQKWSG  132 (142)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSSHH-----HHHHHHHHHHT
T ss_pred             cccccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecChHH-----HHHHHHHHHHC
Confidence            4321                1234444555554 4667777887433     34445555544

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.11  E-value=1.2e-05  Score=69.67  Aligned_cols=117  Identities=15%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..||+|||+|.+|+.+|..|+..|.--++.++|++++.++.....-.+...+.   ....+....+.++ ++++|+|+++
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~---~~~~~~~~~d~~~-~~~adiVVit   95 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFL---QTPKIVADKDYSV-TANSKIVVVT   95 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC---CCSEEEECSSGGG-GTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcccccc---CCCeEEeccchhh-cccccEEEEe
Confidence            46999999999999999999999843489999999876543221110000000   0112334456654 7999999997


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      .-..                -++++..+|.++ .++.+++..+|-++     .+...+.+..|
T Consensus        96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPvD-----v~t~~~~k~sg  152 (160)
T d1i0za1          96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPVD-----ILTYVTWKLSG  152 (160)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCchH-----HHHHHHHHHHC
Confidence            6421                134445556565 45678888887543     33344445444

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.11  E-value=5.3e-06  Score=70.85  Aligned_cols=77  Identities=16%  Similarity=0.267  Sum_probs=47.7

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceE--EeCCHHhhcCCCCE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVI--ATTDAKTALLGADY  202 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~--~e~l~~~g~~~~~~~~~~l~~~i~--a~~~~~ea~~~aDi  202 (458)
                      |||+|||+ |.+|..+|..|+..+.-.++.++|++++.  ++.....-.+..  ........+.  ...+. +++++||+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~--~~~~~~~~~~~~~~~d~-~~l~~aDv   77 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL--AGTRSDANIYVESDENL-RIIDESDV   77 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH--TTSCCCCEEEEEETTCG-GGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcc--cccccCCccccCCcchH-HHhccceE
Confidence            79999996 99999999999988843589999988632  222111100000  0000111222  23344 45899999


Q ss_pred             EEEcC
Q 012720          203 CLHAM  207 (458)
Q Consensus       203 VilaV  207 (458)
                      ||++.
T Consensus        78 VVitA   82 (145)
T d1hyea1          78 VIITS   82 (145)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            99984

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=7.1e-06  Score=71.09  Aligned_cols=117  Identities=11%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..||+|||+|.+|..+|..|+..|.-.++.++|++++.++.....-.+...+-  .. ..+....+.++ ++++|+|+++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~--~~-~~~~~~~d~~~-~~~adivvit   94 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFL--ST-PKIVFGKDYNV-SANSKLVIIT   94 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTC--SC-CEEEEESSGGG-GTTEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhc--CC-CeEEeccchhh-hccccEEEEe
Confidence            46999999999999999999998854589999999876543221100000000  01 12334567655 6999999997


Q ss_pred             Cccc------------cHHHHHHh----hhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          207 MPVQ------------FSSSFLEG----ISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       207 Vp~~------------~v~~vl~~----i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      ....            .-..++++    +.++ .++.+++..+|-++     .+...+.+..|
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~ivivvtNPvD-----v~t~~~~k~sg  151 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKIIVVTNPVD-----ILTYVVWKISG  151 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEEEEeCCcHH-----HHHHHHHHHHC
Confidence            6431            12223333    3333 45778888888443     33344445444

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.04  E-value=9.6e-06  Score=69.10  Aligned_cols=102  Identities=15%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             eEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhhcCCCCEEEEc
Q 012720          129 KVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTALLGADYCLHA  206 (458)
Q Consensus       129 kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDiVila  206 (458)
                      ||+|||+ |.+|+.+|..|+..|.--++.++|.++.+.+.+.-.+...      ..+..... ..+..++++++|+||++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~------~~~~~~~~~~~~~~~~~~~aDivVit   75 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET------RATVKGYLGPEQLPDCLKGCDVVVIP   75 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS------SCEEEEEESGGGHHHHHTTCSEEEEC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh------hcCCCeEEcCCChHHHhCCCCEEEEC
Confidence            8999996 9999999999998885357999999876655443222110      01111112 24556778999999997


Q ss_pred             Cccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 MPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 Vp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      --..                -++++.+.+.++ .++.+++..+|-++
T Consensus        76 ag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD  121 (144)
T d1mlda1          76 AGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVN  121 (144)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHH
T ss_pred             CCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Confidence            5421                255566677776 56778888888554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.02  E-value=1.1e-05  Score=69.10  Aligned_cols=117  Identities=17%  Similarity=0.184  Sum_probs=72.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||+|||+|.+|+.+|..|...+. .++.++|+++++++.....-.+...+.  ..+..+....+.+ .++++|+|+++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~--~~~~~v~~~~~~~-~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMA--YSNCKVSGSNTYD-DLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHH--TCCCCEEEECCGG-GGTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhcccc--CCCcEEEeccccc-ccCCCcEEEEe
Confidence            4699999999999999999988875 589999998865543322110100000  0122344455554 47999999998


Q ss_pred             Cccc---------------------cHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          207 MPVQ---------------------FSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       207 Vp~~---------------------~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      .-..                     -++++.+.+.++- ++.+++..+|-++     .+...+.+..|
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~-p~aivivvtNPvD-----~~t~~~~~~sg  140 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVD-----VMVQLLHQHSG  140 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHH-----HHHHHHHHHHC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchH-----HHHHHHHHHHC
Confidence            6521                     1344445555553 5778888887443     33445545433

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.02  E-value=2.1e-05  Score=69.22  Aligned_cols=96  Identities=11%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc--CCCCEEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL--LGADYCL  204 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~--~~aDiVi  204 (458)
                      +||||||+|.||...+..|.... +.+|+ +++++++.++.+.+..         .++...+..+|.++++  .+.|+|+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~iD~v~   71 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAFATAN---------NYPESTKIHGSYESLLEDPEIDALY   71 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHHHHHT---------TCCTTCEEESSHHHHHHCTTCCEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccccchhcc---------ccccceeecCcHHHhhhccccceee
Confidence            68999999999999999887764 36776 6799998877776532         1223456778988876  4689999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|+|.....+.+..+..   .|..|+ +.+-+.
T Consensus        72 I~tp~~~h~~~~~~~l~---~g~~v~-~EKP~~  100 (184)
T d1ydwa1          72 VPLPTSLHVEWAIKAAE---KGKHIL-LEKPVA  100 (184)
T ss_dssp             ECCCGGGHHHHHHHHHT---TTCEEE-ECSSCS
T ss_pred             ecccchhhcchhhhhhh---ccceee-cccccc
Confidence            99998877666655444   355543 555444

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.01  E-value=6e-06  Score=72.30  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=50.5

Q ss_pred             CCeEEEECcchHH--HHHHHHHHhcC-C-CCeEEEEeCCHHH--HHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFG--TAMAAHVANKK-S-QLKVYMLMRDPAV--CQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG--~~iA~~La~aG-~-~~~V~v~~r~~~~--~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      +|||+|||+|+.|  ..++..+.... + .-++.++|++++.  .+.+...+.  .+......+..+..++|..++++++
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~--~~~~~~~~~~~~~~~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAK--RMVEKAGVPIEIHLTLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHH--HHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHH--HHHHhcCCCceeeecCCchhhcCCC
Confidence            3799999999776  44555555431 1 1389999998743  333322110  0111112334567788988889999


Q ss_pred             CEEEEcCcc
Q 012720          201 DYCLHAMPV  209 (458)
Q Consensus       201 DiVilaVp~  209 (458)
                      |+||++...
T Consensus        79 DvVv~ta~~   87 (169)
T d1s6ya1          79 DFVTTQFRV   87 (169)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEEcccc
Confidence            999999863

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=3.1e-05  Score=67.99  Aligned_cols=96  Identities=16%  Similarity=0.177  Sum_probs=66.2

Q ss_pred             CCCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          126 RTNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      +++||+|||+|.||.. ....+.+.+...+|. ++++++++++.+.+...            ....++|.+++++  +.|
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~------------~~~~~~~~~ell~~~~id   69 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG------------NPAVFDSYEELLESGLVD   69 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS------------SCEEESCHHHHHHSSCCS
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc------------ccceeeeeeccccccccc
Confidence            4579999999999986 466666543224655 78999998887765421            1245678888764  589


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +|++|+|.....+++..+..   .|..|+ +-|-+.
T Consensus        70 ~v~I~tp~~~h~~~~~~al~---~gk~V~-~EKPl~  101 (181)
T d1zh8a1          70 AVDLTLPVELNLPFIEKALR---KGVHVI-CEKPIS  101 (181)
T ss_dssp             EEEECCCGGGHHHHHHHHHH---TTCEEE-EESSSS
T ss_pred             eeeccccccccccccccccc---cchhhh-cCCCCc
Confidence            99999999887777766554   344443 455443

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=7e-06  Score=71.74  Aligned_cols=81  Identities=20%  Similarity=0.199  Sum_probs=51.7

Q ss_pred             CCCeEEEECcchHHHHHH--HHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          126 RTNKVVVLGGGSFGTAMA--AHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA--~~La~aG-~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +..||+|||+|+.|+..+  ..|...- + .-++.++|.++++++........  +......+..+..++|..|++++||
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDV--FIREKAPDIEFAATTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHH--HHHHHCTTSEEEEESCHHHHHSSCS
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHH--HHHHhCCCcceEecCChhhccCCCC
Confidence            356999999999887633  3333221 0 13899999999876633221100  0000112345677889999999999


Q ss_pred             EEEEcCc
Q 012720          202 YCLHAMP  208 (458)
Q Consensus       202 iVilaVp  208 (458)
                      +||++.-
T Consensus        80 ~Vvitag   86 (167)
T d1u8xx1          80 FVMAHIR   86 (167)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999975

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=1.5e-05  Score=68.93  Aligned_cols=94  Identities=12%  Similarity=0.078  Sum_probs=64.3

Q ss_pred             CCeEEEECcchHHHH-HHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTA-MAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +|||||||+|.||.. ....+.... +.++. ++|++++.++.+.+...             +...++.++++++.|+|+
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~~-~~~i~~v~d~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~D~V~   66 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAAS-DWTLQGAWSPTRAKALPICESWR-------------IPYADSLSSLAASCDAVF   66 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCS-SEEEEEEECSSCTTHHHHHHHHT-------------CCBCSSHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEEechhHhhhhhhhccc-------------ccccccchhhhhhccccc
Confidence            369999999999986 455565543 26665 78899888777765421             223457778788999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|+|.....+++.....   .|..|+ +-|-+..
T Consensus        67 I~tp~~~h~~~~~~al~---~gk~V~-~EKPla~   96 (164)
T d1tlta1          67 VHSSTASHFDVVSTLLN---AGVHVC-VDKPLAE   96 (164)
T ss_dssp             ECSCTTHHHHHHHHHHH---TTCEEE-EESSSCS
T ss_pred             ccccchhcccccccccc---ccceee-ccccccC
Confidence            99998877776666544   354443 4444443

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.4e-05  Score=67.69  Aligned_cols=98  Identities=14%  Similarity=0.092  Sum_probs=70.8

Q ss_pred             chhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          121 TDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       121 ~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      ++++...++++|+|.|.+|..+|.+|..-|  .+|+++++++-.+-+..-.|              ..+ ...++++..+
T Consensus        18 t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G--~~V~v~e~dp~~al~A~~dG--------------~~v-~~~~~a~~~a   80 (163)
T d1li4a1          18 TDVMIAGKVAVVAGYGDVGKGCAQALRGFG--ARVIITEIDPINALQAAMEG--------------YEV-TTMDEACQEG   80 (163)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTT--------------CEE-CCHHHHTTTC
T ss_pred             hCceecCCEEEEeccccccHHHHHHHHhCC--CeeEeeecccchhHHhhcCc--------------eEe-eehhhhhhhc
Confidence            445555789999999999999999999888  99999999985422222223              122 3678899999


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      |+|+.++....+-  -.+-.+.++++.+|.++. .++.
T Consensus        81 divvtaTGn~~vI--~~eh~~~MKdgaIL~N~G-hfd~  115 (163)
T d1li4a1          81 NIFVTTTGCIDII--LGRHFEQMKDDAIVCNIG-HFDV  115 (163)
T ss_dssp             SEEEECSSCSCSB--CHHHHTTCCTTEEEEECS-SSTT
T ss_pred             cEEEecCCCccch--hHHHHHhccCCeEEEEec-cccc
Confidence            9999999864421  123356688898887765 3443

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=1.2e-05  Score=69.88  Aligned_cols=77  Identities=17%  Similarity=0.091  Sum_probs=52.2

Q ss_pred             CeEEEECcchHHHHHHHHHHhcC----CCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKK----SQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG----~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |||+|||+|+.|.+++......+    ...++.++|.++++++..........     ..+..+.++++..++++++|+|
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~-----~~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLV-----KDRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHH-----TTSSEEEECSSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhh-----ccCceEEEecCcccccCCCCEE
Confidence            79999999999887775432211    01589999999987764433211000     1123466778888889999999


Q ss_pred             EEcCcc
Q 012720          204 LHAMPV  209 (458)
Q Consensus       204 ilaVp~  209 (458)
                      |++.-.
T Consensus        76 Vita~~   81 (162)
T d1up7a1          76 IFQFRP   81 (162)
T ss_dssp             EECCCT
T ss_pred             EEeccc
Confidence            998753

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.91  E-value=4.5e-05  Score=65.89  Aligned_cols=81  Identities=16%  Similarity=0.227  Sum_probs=58.5

Q ss_pred             CeEEEECcchHHHH-HHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC-CCCEEEE
Q 012720          128 NKVVVLGGGSFGTA-MAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL-GADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~~-iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~-~aDiVil  205 (458)
                      |||+|||+|.||.. ....|.+.+ +.++.+++++++.++.+.+.....            ..++|.+++++ +.|+|++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~~~~~~~------------~~~~~~~~ll~~~iD~V~I   68 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRYRVS------------ATCTDYRDVLQYGVDAVMI   68 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHTTCC------------CCCSSTTGGGGGCCSEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhcccc------------cccccHHHhcccccceecc
Confidence            69999999999976 455665554 378889999999888887642111            12345566553 6899999


Q ss_pred             cCccccHHHHHHhhhh
Q 012720          206 AMPVQFSSSFLEGISD  221 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~  221 (458)
                      |+|.....+++..+..
T Consensus        69 ~tp~~~H~~~~~~al~   84 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLH   84 (167)
T ss_dssp             CSCGGGHHHHHHHHHH
T ss_pred             cccccccccccccccc
Confidence            9999888777766554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=1.8e-05  Score=67.99  Aligned_cols=109  Identities=16%  Similarity=0.188  Sum_probs=67.0

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCC-C----CeEEEEe--CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKS-Q----LKVYMLM--RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~-~----~~V~v~~--r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      |.+.|||+|||+ |.+|+.+|..|+..+. +    ....+++  +..+..+.+...-..    ........+...++..+
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   76 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED----CAFPLLAGLEATDDPKV   76 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT----TTCTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhc----cccccccccccCCchhh
Confidence            455689999997 9999999999998652 1    1123333  444444433221100    01112334566677778


Q ss_pred             hcCCCCEEEEcCcc-----c-----------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          196 ALLGADYCLHAMPV-----Q-----------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       196 a~~~aDiVilaVp~-----~-----------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +++++|+||++--.     .           -++++.+.|.++.+++.+++..+|-+
T Consensus        77 ~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPv  133 (154)
T d1y7ta1          77 AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPA  133 (154)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             hcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcH
Confidence            89999999997631     1           13444456667666677777778743

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.91  E-value=1.6e-05  Score=69.34  Aligned_cols=89  Identities=11%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +.+||+|||+|.||..++..|.+.. +.+++ +++++++..       .          ..++....+.++...+.|+|+
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~-~~elvav~~~~~~~~-------~----------~~~~~~~~~~~~~~~~~D~Vv   63 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQP-DMDLVGIFSRRATLD-------T----------KTPVFDVADVDKHADDVDVLF   63 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCS-SEEEEEEEESSSCCS-------S----------SSCEEEGGGGGGTTTTCSEEE
T ss_pred             CcceEEEECChHHHHHHHHHHHhCC-CcEEEEEEecccccc-------c----------ccccccchhhhhhccccceEE
Confidence            4579999999999999999998753 36655 567775321       0          112445556677778999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +|+|+....+++...   +..|..+|.+.+.
T Consensus        64 i~tp~~~h~~~a~~a---L~aG~~vv~~~~~   91 (170)
T d1f06a1          64 LCMGSATDIPEQAPK---FAQFACTVDTYDN   91 (170)
T ss_dssp             ECSCTTTHHHHHHHH---HTTTSEEECCCCC
T ss_pred             EeCCCcccHHHHHHH---HHCCCcEEEecCc
Confidence            999998776665443   4457777765543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=6.5e-05  Score=63.84  Aligned_cols=101  Identities=20%  Similarity=0.285  Sum_probs=62.2

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHH-h-hcCCCccCCCCCCCCceEE-eCCHHhhcCCCCE
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSIN-E-KHCNCRYFPEQKLPENVIA-TTDAKTALLGADY  202 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~-~-~g~~~~~~~~~~l~~~i~a-~~~~~ea~~~aDi  202 (458)
                      |||+||| +|.+|+.+|..|+.. +...++.++|..+. .+... + .+...      ..+..... .++. ++++++|+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~Dl~h~~~------~~~~~~~~~~~~~-~~~~~aDv   72 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPT------AVKIKGFSGEDAT-PALEGADV   72 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHHHHTSCS------SCEEEEECSSCCH-HHHTTCSE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHHHHCCcc------ccCCcEEEcCCCc-cccCCCCE
Confidence            7999999 599999999988643 44478999998653 22111 1 11110      01111111 2344 45899999


Q ss_pred             EEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          203 CLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       203 VilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ||++--..                -++++.++|.++- |+.+++..+|-++
T Consensus        73 vvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD  122 (145)
T d2cmda1          73 VLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVN  122 (145)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHH
T ss_pred             EEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCch
Confidence            99976321                2455556676655 5677888887544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.73  E-value=1.3e-05  Score=69.59  Aligned_cols=96  Identities=19%  Similarity=0.264  Sum_probs=69.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE--eCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA--TTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a--~~~~~ea~~~aDiVi  204 (458)
                      .-||.|||+|..|..-++...+-|  .+|+++|.+.+..++++.......         ....  ...+++.++++|+||
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~~~---------~~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSRV---------ELLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGGS---------EEEECCHHHHHHHHHTCSEEE
T ss_pred             CcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcccc---------eeehhhhhhHHHhhccCcEEE
Confidence            359999999999999888888888  999999999999888876532110         0011  113456788999999


Q ss_pred             EcCccc--cHHHHH-HhhhhcCCCCCeEEEec
Q 012720          205 HAMPVQ--FSSSFL-EGISDYVDPGLPFISLS  233 (458)
Q Consensus       205 laVp~~--~v~~vl-~~i~~~l~~~~ivV~~s  233 (458)
                      -++-..  ....++ ++....+++|.+||+++
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             EeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence            998632  111111 44567789999999986

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.6e-06  Score=72.81  Aligned_cols=75  Identities=19%  Similarity=0.307  Sum_probs=51.6

Q ss_pred             cCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          125 ERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       125 ~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |.|+||+|+| .|.+|..++..|.++|  ++|+++.|++++.......+..  ...     ..+.-.++++++++++|+|
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g--~~V~~~~R~~~~~~~~~~~~~~--~~~-----gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSRLPSEGPRPAH--VVV-----GDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGGSCSSSCCCSE--EEE-----SCTTSHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEcChhhcccccccccc--ccc-----ccccchhhHHHHhcCCCEE
Confidence            4678999999 5999999999999999  9999999998754322221111  000     0000012445678899999


Q ss_pred             EEcCc
Q 012720          204 LHAMP  208 (458)
Q Consensus       204 ilaVp  208 (458)
                      |.++.
T Consensus        72 i~~~g   76 (205)
T d1hdoa_          72 IVLLG   76 (205)
T ss_dssp             EECCC
T ss_pred             EEEec
Confidence            99875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=6.7e-05  Score=65.21  Aligned_cols=96  Identities=11%  Similarity=0.134  Sum_probs=65.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|.|+|+|..+.+++..|.+.|  .+|++++|+.++++.+.+.-...         ..+......+.....+|+||-|
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g--~~i~I~nRt~~ka~~l~~~~~~~---------~~~~~~~~~~~~~~~~dliIN~   86 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAHT---------GSIQALSMDELEGHEFDLIINA   86 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGGG---------SSEEECCSGGGTTCCCSEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHhcccc--eEEEeccchHHHHHHHHHHHhhc---------ccccccccccccccccceeecc
Confidence            578999999999999999999998  78999999999988887642110         0123332222224679999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|.....+....-...++++.+++++.
T Consensus        87 Tp~G~~~~~~~~~~~~~~~~~~v~D~v  113 (170)
T d1nyta1          87 TSSGISGDIPAIPSSLIHPGIYCYDMF  113 (170)
T ss_dssp             CSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred             cccCcccCCCCCcHHHhccCcEEEEee
Confidence            996432211111123466788888875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.61  E-value=0.00011  Score=63.12  Aligned_cols=99  Identities=15%  Similarity=0.102  Sum_probs=72.9

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      .+++|...+++.|+|.|-.|..+|.+|...|  ..|+++..++-.  +++..-      .      +.++ .+.+++++.
T Consensus        16 ~t~~~laGk~vvV~GYG~vGrG~A~~~rg~G--a~V~V~E~DPi~--alqA~m------d------Gf~v-~~~~~a~~~   78 (163)
T d1v8ba1          16 ATDFLISGKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDPIC--AIQAVM------E------GFNV-VTLDEIVDK   78 (163)
T ss_dssp             HHCCCCTTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHH--HHHHHT------T------TCEE-CCHHHHTTT
T ss_pred             HhCceecCCEEEEecccccchhHHHHHHhCC--CEEEEEecCchh--hHHHHh------c------CCcc-CchhHcccc
Confidence            3567767889999999999999999999988  999999999844  444321      1      1223 378899999


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|++|.++....+-  -.+-...++++.+|.+.. .++.
T Consensus        79 aDi~vTaTGn~~vI--~~~h~~~MKdgaIl~N~G-Hfd~  114 (163)
T d1v8ba1          79 GDFFITCTGNVDVI--KLEHLLKMKNNAVVGNIG-HFDD  114 (163)
T ss_dssp             CSEEEECCSSSSSB--CHHHHTTCCTTCEEEECS-STTT
T ss_pred             CcEEEEcCCCCccc--cHHHHHHhhCCeEEEecc-ccch
Confidence            99999999975421  122346688888887665 3444

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.54  E-value=0.00013  Score=62.31  Aligned_cols=106  Identities=16%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCC-----CCeEEEEeCCH--HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKS-----QLKVYMLMRDP--AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~-----~~~V~v~~r~~--~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      .|||+|||+ |.+|..+|..|+..+.     ..++.++|.++  ++++.+.-....    ........+...++..++++
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~   78 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD----CALPLLKDVIATDKEEIAFK   78 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH----TCCTTEEEEEEESCHHHHTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcc----cccccccccccCcccccccC
Confidence            579999996 9999999999986541     12566777654  333333221100    01112234566778888899


Q ss_pred             CCCEEEEcCccc----------------cHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          199 GADYCLHAMPVQ----------------FSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       199 ~aDiVilaVp~~----------------~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ++|+||++--..                -++++...|.++.++..+++..+|-+
T Consensus        79 ~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPv  132 (154)
T d5mdha1          79 DLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPA  132 (154)
T ss_dssp             TCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             CceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcH
Confidence            999999976421                24445556666666555566677643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.53  E-value=0.0002  Score=60.51  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             eEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCH--HHHH----HHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP--AVCQ----SINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       129 kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~--~~~e----~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      ||+||| +|.+|..+|..|...+.-.++.++|+..  +.++    .+.. ..   .+   ..+..+. +.+.++ ++++|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~-~~---~~---~~~~~i~-~~~~~~-~~~aD   72 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH-GI---AY---DSNTRVR-QGGYED-TAGSD   72 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHH-HH---TT---TCCCEEE-ECCGGG-GTTCS
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhh-cc---cc---cCCceEe-eCCHHH-hhhcC
Confidence            899999 6999999999999988545799999643  3322    2221 00   01   1112233 345554 78999


Q ss_pred             EEEEcCcc-----cc-----------HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhC
Q 012720          202 YCLHAMPV-----QF-----------SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALR  253 (458)
Q Consensus       202 iVilaVp~-----~~-----------v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg  253 (458)
                      +|+++.-.     +.           ++++.+.|.++- ++.+++..+|-++     .+...+.+..|
T Consensus        73 iVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNPvD-----vmt~~~~k~sg  134 (142)
T d1o6za1          73 VVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVD-----LLNRHLYEAGD  134 (142)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHH-----HHHHHHHHHSS
T ss_pred             EEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecChHH-----HHHHHHHHHHC
Confidence            99997541     11           333444455443 5678888887543     33444545433

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.51  E-value=4.1e-05  Score=67.34  Aligned_cols=104  Identities=14%  Similarity=0.145  Sum_probs=67.7

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCC---CC------CCCce--EEe----CC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPE---QK------LPENV--IAT----TD  192 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~---~~------l~~~i--~a~----~~  192 (458)
                      -||.|||+|..|..-++....-|  .+|+++|.+.+..+++++.+........   ..      +....  ...    ..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            48999999999998888888778  9999999999888888876532211100   00      00000  000    12


Q ss_pred             HHhhcCCCCEEEEcCcccc--HHH-HHHhhhhcCCCCCeEEEec
Q 012720          193 AKTALLGADYCLHAMPVQF--SSS-FLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp~~~--v~~-vl~~i~~~l~~~~ivV~~s  233 (458)
                      +.+.+.++|+||.++--..  ..- +-++....+++|.+||+++
T Consensus       108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence            3345789999999876321  111 1245667789999999986

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.49  E-value=7.5e-05  Score=72.19  Aligned_cols=98  Identities=12%  Similarity=0.209  Sum_probs=69.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+++|||+|..+..-+..+...-.-.+|.+|+|+++..+++.++-..   .    ....+.+++++++++++||+|+.|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~---~----~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE---Y----SGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT---C----TTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh---c----cCCCceecCCHHHHHhcCCceeec
Confidence            468999999999998887775432126899999999988877664211   0    112467788999999999999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +.+.....++.  ...+++|+.|..+.
T Consensus       201 Tas~s~~Pv~~--~~~l~pG~hI~aiG  225 (340)
T d1x7da_         201 TADKAYATIIT--PDMLEPGMHLNAVG  225 (340)
T ss_dssp             CCCSSEEEEEC--GGGCCTTCEEEECS
T ss_pred             cccCCCCcccc--hhhcCCCCEEeecc
Confidence            96543222221  35678898876654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.48  E-value=6.5e-05  Score=65.51  Aligned_cols=96  Identities=15%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|.|+|+|.++.+++..|.+.+  .+|++++|+.++++.+.+.-.. .        .++......+....++|+||-|
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~-~--------~~~~~~~~~~~~~~~~diiIN~   86 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQP-Y--------GNIQAVSMDSIPLQTYDLVINA   86 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGG-G--------SCEEEEEGGGCCCSCCSEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhh-c--------cccchhhhccccccccceeeec
Confidence            578999999999999999999866  8999999999998888664210 0        1123322222235789999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|.....+........++++..++++.
T Consensus        87 tp~g~~~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          87 TSAGLSGGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             CCC-------CCCHHHHHHCSCEEESC
T ss_pred             ccccccccccchhhhhhcccceeeeee
Confidence            996432222111122233466777764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.46  E-value=0.00022  Score=64.51  Aligned_cols=98  Identities=10%  Similarity=0.182  Sum_probs=66.0

Q ss_pred             CCCeEEEECcchHHH-HHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhc-CCCccCCCCCCCCceEEeCCHHhhcC--CC
Q 012720          126 RTNKVVVLGGGSFGT-AMAAHVANKKSQLKVY-MLMRDPAVCQSINEKH-CNCRYFPEQKLPENVIATTDAKTALL--GA  200 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~-~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g-~~~~~~~~~~l~~~i~a~~~~~ea~~--~a  200 (458)
                      +.-||+|||+|.||. .+...+.... +.+|. ++|++++.++.+.+.. ..         +..+..++|.++++.  +.
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~-~~~ivav~d~~~~~a~~~~~~~~i~---------~~~~~~~~d~~ell~~~~i  101 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQ-HSRIEALVSGNAEKAKIVAAEYGVD---------PRKIYDYSNFDKIAKDPKI  101 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCS-SEEEEEEECSCHHHHHHHHHHTTCC---------GGGEECSSSGGGGGGCTTC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCC-CceEEEEecCCHHHHHHHHHhhccc---------cccccccCchhhhcccccc
Confidence            346899999999997 4555555542 26766 7899999888776642 21         123445568888765  58


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      |+|++|+|.....++......   .|..|+ +-|-+.
T Consensus       102 D~V~I~tp~~~H~~~~~~al~---~gk~v~-~EKPla  134 (221)
T d1h6da1         102 DAVYIILPNSLHAEFAIRAFK---AGKHVM-CEKPMA  134 (221)
T ss_dssp             CEEEECSCGGGHHHHHHHHHH---TTCEEE-ECSSCC
T ss_pred             eeeeeccchhhhhhHHHHhhh---cchhhh-cCCCcc
Confidence            999999999887777655544   354443 454443

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.44  E-value=0.00015  Score=62.23  Aligned_cols=96  Identities=19%  Similarity=0.263  Sum_probs=55.0

Q ss_pred             hcCCCeEEEECcchHHHH-HHHHHHhcCCCCeEEE-EeCCHH-H-HHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---
Q 012720          124 LERTNKVVVLGGGSFGTA-MAAHVANKKSQLKVYM-LMRDPA-V-CQSINEKHCNCRYFPEQKLPENVIATTDAKTA---  196 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~-iA~~La~aG~~~~V~v-~~r~~~-~-~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---  196 (458)
                      |.+++||||||+|.+|.- +...|.... ..++.. .+|+.+ . ....++.+...             ...+.++.   
T Consensus         1 M~kkirvaIIGaG~ig~~~~~~~l~~~~-~~el~avas~~~~~~~~~~a~~~~i~~-------------~~~~~d~l~~~   66 (157)
T d1nvmb1           1 MNQKLKVAIIGSGNIGTDLMIKVLRNAK-YLEMGAMVGIDAASDGLARAQRMGVTT-------------TYAGVEGLIKL   66 (157)
T ss_dssp             CCSCEEEEEECCSHHHHHHHHHHHHHCS-SEEEEEEECSCTTCHHHHHHHHTTCCE-------------ESSHHHHHHHS
T ss_pred             CCCCcEEEEEcCcHHHHHHHHHHHhhCC-cceEEEEEecchhccchhhhhhcCCcc-------------cccceeeeeec
Confidence            556789999999999985 555554443 256654 467754 2 22333333211             11122221   


Q ss_pred             --cCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          197 --LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       197 --~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                        ..+.|+||+|+|.....+-.. ....++.|..||+.+.
T Consensus        67 ~~~~~iDiVf~ATpag~h~~~~~-~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          67 PEFADIDFVFDATSASAHVQNEA-LLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             GGGGGEEEEEECSCHHHHHHHHH-HHHHHCTTCEEEECST
T ss_pred             ccccccCEEEEcCCchhHHHhHH-HHHHHHcCCEEEEccc
Confidence              246899999999754322111 1222457889999884

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.0002  Score=61.88  Aligned_cols=126  Identities=12%  Similarity=0.119  Sum_probs=79.0

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      ..+||+|+|+ |.||..++..+.+.. +.++. .++|....  .+   |.....+.+. .+.++....++++....+|+|
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~-~~~lv~~~~~~~~~--~~---g~d~~~~~~~-~~~~~~~~~~~~~~~~~~DVi   75 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALE-GVQLGAALEREGSS--LL---GSDAGELAGA-GKTGVTVQSSLDAVKDDFDVF   75 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHST-TEECCCEECCTTCT--TC---SCCTTCSSSS-SCCSCCEESCSTTTTTSCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecccch--hc---cchhhhhhcc-ccCCceeeccHHHHhcccceE
Confidence            3679999995 999999999998764 25554 34554321  01   1111111111 123466778888888899999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~  269 (458)
                      |=.+....+.+.++....   .+..+|.-+.|+..+..    +.+.+. ..   ...++..|++..
T Consensus        76 IDFs~p~~~~~~~~~a~~---~~~~~ViGTTG~~~~~~----~~i~~~-a~---~ipi~~apN~Sl  130 (162)
T d1diha1          76 IDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGK----QAIRDA-AA---DIAIVFAANFSM  130 (162)
T ss_dssp             EECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHH----HHHHHH-TT---TSCEEECSCCCH
T ss_pred             EEeccHHHHHHHHHHHHh---ccceeEEecCCCcHHHH----HHHHHH-cC---CCCEEEEccccH
Confidence            999888887777765544   36677777779876543    233332 22   134678888653

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=0.00044  Score=57.21  Aligned_cols=97  Identities=12%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||+|+|+ |.||..++..+.+.+  +++.. ++++                               ..+.+.++|+||=
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~--~~l~~~id~~-------------------------------~~~~~~~~DVvID   47 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKG--HELVLKVDVN-------------------------------GVEELDSPDVVID   47 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEETT-------------------------------EEEECSCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCC--CeEEEEECCC-------------------------------cHHHhccCCEEEE
Confidence            79999996 999999999888887  77763 2321                               1123567899999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccH
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA  268 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a  268 (458)
                      .+.+..+.+.++....+   +..+|.-+.|+..+..    +.+.+. ..   ..+++..|++.
T Consensus        48 FS~p~~~~~~l~~~~~~---~~p~ViGTTG~~~~~~----~~i~~~-ak---~~pv~~a~N~s   99 (128)
T d1vm6a3          48 FSSPEALPKTVDLCKKY---RAGLVLGTTALKEEHL----QMLREL-SK---EVPVVQAYSRT   99 (128)
T ss_dssp             CSCGGGHHHHHHHHHHH---TCEEEECCCSCCHHHH----HHHHHH-TT---TSEEEECSCTH
T ss_pred             ecCHHHHHHHHHHHHhc---CCCEEEEcCCCCHHHH----HHHHHH-Hh---hCCEEeeeccC
Confidence            98888888877766543   5677777779886543    233333 21   23567777654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.36  E-value=0.00064  Score=59.26  Aligned_cols=109  Identities=9%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             hcCCCeEEEECc-chHHHHHHHHHHhcCC---C--CeEEEEeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          124 LERTNKVVVLGG-GSFGTAMAAHVANKKS---Q--LKVYMLMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       124 ~~~~~kI~IIGa-G~mG~~iA~~La~aG~---~--~~V~v~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      +.+..||+|+|+ |.+|..++..|+....   +  .++.++|.+..  .++.+.-.-...    ...+...+..+++..+
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~----a~~~~~~~~~~~~~~~   96 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS----LYPLLREVSIGIDPYE   96 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT----TCTTEEEEEEESCHHH
T ss_pred             cCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc----ccccccCccccccchh
Confidence            334458999996 9999999999987531   1  25667776653  233222110000    1112234667788888


Q ss_pred             hcCCCCEEEEcCcc-----cc-----------HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          196 ALLGADYCLHAMPV-----QF-----------SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       196 a~~~aDiVilaVp~-----~~-----------v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +++++|+||++--.     +.           ++++.+.|.++.+++.+|+..+|-+
T Consensus        97 ~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPv  153 (175)
T d7mdha1          97 VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPC  153 (175)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred             hccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcH
Confidence            99999999997632     11           4445566777777777777777743

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.30  E-value=0.00064  Score=53.27  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             hcCCCeEEEECcchHH-HHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          124 LERTNKVVVLGGGSFG-TAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG-~~iA~~La~aG~~~~V~v~~r~-~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      |.+.+||-|||.|..| +++|..|.+.|  ++|+.+|+. ....+.+.+.|..            +..-.+. +-+.++|
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G--~~VsGSD~~~~~~~~~L~~~Gi~------------v~~g~~~-~~i~~~d   69 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIADGVVTQRLAQAGAK------------IYIGHAE-EHIEGAS   69 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESCCSHHHHHHHHTTCE------------EEESCCG-GGGTTCS
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCC--CEEEEEeCCCChhhhHHHHCCCe------------EEECCcc-ccCCCCC
Confidence            4567899999999999 67799999999  999999976 4456777776642            1111233 3367889


Q ss_pred             EEEEcCc
Q 012720          202 YCLHAMP  208 (458)
Q Consensus       202 iVilaVp  208 (458)
                      +||.+..
T Consensus        70 ~vV~S~A   76 (96)
T d1p3da1          70 VVVVSSA   76 (96)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            8887643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00017  Score=56.16  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||+|+|+|..|.+.|..|.+.|  .+|++||.+.
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g--~~v~~~D~~~   38 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRM   38 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTT--CCCEEEESSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCC--CEEEEeeCCc
Confidence            468999999999999999999999  9999999754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.19  E-value=0.00042  Score=59.85  Aligned_cols=67  Identities=19%  Similarity=0.194  Sum_probs=51.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .+||.|||+|.+|.+++..|.+.|. .+|++++|+.++++.+.+.- .            .....+..  ..++|+||-|
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~-~~I~I~nR~~~ka~~L~~~~-~------------~~~~~~~~--~~~~DliINa   80 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALY-G------------YAYINSLE--NQQADILVNV   80 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHH-T------------CEEESCCT--TCCCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecccHHHHHHHHHhh-h------------hhhhhccc--ccchhhheec
Confidence            4689999999999999999999983 37999999999988887642 1            11122222  2578999999


Q ss_pred             Ccc
Q 012720          207 MPV  209 (458)
Q Consensus       207 Vp~  209 (458)
                      +|.
T Consensus        81 Tpi   83 (167)
T d1npya1          81 TSI   83 (167)
T ss_dssp             SST
T ss_pred             ccc
Confidence            983

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00096  Score=51.49  Aligned_cols=66  Identities=17%  Similarity=0.141  Sum_probs=49.6

Q ss_pred             CeEEEECcchHHH-HHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVLGGGSFGT-AMAAHVANKKSQLKVYMLMRDP-AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~IIGaG~mG~-~iA~~La~aG~~~~V~v~~r~~-~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |||=|||.|.+|. ++|..|.+.|  ++|+..|+.. +..++|++.|.... .           -.+.+ -+.++|+||.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G--~~VsGSD~~~~~~t~~L~~~Gi~i~-~-----------gh~~~-~i~~~d~vV~   66 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNG--NDVYGSNIEETERTAYLRKLGIPIF-V-----------PHSAD-NWYDPDLVIK   66 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEECSSCCHHHHHHHHTTCCEE-S-----------SCCTT-SCCCCSEEEE
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCC--CeEEEEeCCCChhHHHHHHCCCeEE-e-----------eeccc-ccCCCCEEEE
Confidence            7999999999998 7899999999  9999999875 56778888775321 1           11222 2567898887


Q ss_pred             cCc
Q 012720          206 AMP  208 (458)
Q Consensus       206 aVp  208 (458)
                      +--
T Consensus        67 SsA   69 (89)
T d1j6ua1          67 TPA   69 (89)
T ss_dssp             CTT
T ss_pred             ecC
Confidence            643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0018  Score=55.51  Aligned_cols=93  Identities=11%  Similarity=0.053  Sum_probs=63.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh--------c
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA--------L  197 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea--------~  197 (458)
                      ..+|.|+|+|.+|...+..+...|  . +|+++++++++++..++.|....+...         ..+..+.        -
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~---------~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEIGADLVLQIS---------KESPQEIARKVEGQLG   95 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTTCSEEEECS---------SCCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCccHHHHHHHHHHcC--CceEEeccCCHHHHHHHHHhCCccccccc---------ccccccccccccccCC
Confidence            468999999999999888888888  5 799999999999888876643221110         0122221        1


Q ss_pred             CCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          198 LGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       198 ~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .++|+||-|+.....   ++.....++++..++.+.
T Consensus        96 ~g~Dvvid~~G~~~~---~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          96 CKPEVTIECTGAEAS---IQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             SCCSEEEECSCCHHH---HHHHHHHSCTTCEEEECS
T ss_pred             CCceEEEeccCCchh---HHHHHHHhcCCCEEEEEe
Confidence            368999999987543   333444555666666554

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.0011  Score=57.83  Aligned_cols=99  Identities=15%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      |+||+|+|+ |..|.-+.+.|.++- ..++..+..+...-+.+.+..-  .......    + ...+.++...++|++|+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP-~~ei~~l~s~~~aG~~i~~~~p--~~~~~~~----~-~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHP-EAKITYLSSRTYAGKKLEEIFP--STLENSI----L-SEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCT-TEEEEEEECSTTTTSBHHHHCG--GGCCCCB----C-BCCCHHHHHHHCSEEEE
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCC-CceEEEeeccccCCCcccccCc--hhhcccc----c-cccCHhHhccccceEEE
Confidence            679999996 999999999999875 3666655433221112221110  0011111    1 11355665678999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      |+|.....+.+..    . .+..||+++.-+-.
T Consensus        73 a~p~~~s~~~~~~----~-~~~~VIDlSadfRl  100 (176)
T d1vkna1          73 ALPAGASYDLVRE----L-KGVKIIDLGADFRF  100 (176)
T ss_dssp             CCSTTHHHHHHTT----C-CSCEEEESSSTTTC
T ss_pred             ccccHHHHHHHHh----h-ccceEEecCccccc
Confidence            9998765554432    2 47789999965443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00066  Score=57.40  Aligned_cols=96  Identities=9%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG-~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      |+||||||+ |.+|.-|-..|.++. + -.+++.+..++..       +....+.... .  ...-..+.. ...++|++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~-------g~~~~~~~~~-~--~~~~~~~~~-~~~~~Div   69 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG-------QAAPSFGGTT-G--TLQDAFDLE-ALKALDII   69 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT-------SBCCGGGTCC-C--BCEETTCHH-HHHTCSEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc-------cccccccCCc-e--eeecccchh-hhhcCcEE
Confidence            569999997 999999998776543 1 1356666655321       2111111110 0  011122333 46899999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEecc
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSK  234 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~sn  234 (458)
                      |+|+|......+...+... ..+.+||+.+.
T Consensus        70 F~a~~~~~s~~~~~~~~~~-g~~~~VID~Ss   99 (146)
T d1t4ba1          70 VTCQGGDYTNEIYPKLRES-GWQGYWIDAAS   99 (146)
T ss_dssp             EECSCHHHHHHHHHHHHHT-TCCCEEEECSS
T ss_pred             EEecCchHHHHhhHHHHhc-CCCeecccCCc
Confidence            9999988777777666542 33467888884

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.02  E-value=0.0011  Score=53.71  Aligned_cols=97  Identities=13%  Similarity=0.244  Sum_probs=69.5

Q ss_pred             CeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          128 NKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       128 ~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      ++|+|||+    |..|..+...|.+.|  ++|..++.+.+.   +                .++....+++|.-...|++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g--~~V~pVnP~~~~---i----------------~G~~~y~sl~~lp~~~D~v   60 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKG--FEVLPVNPNYDE---I----------------EGLKCYRSVRELPKDVDVI   60 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCSE---E----------------TTEECBSSGGGSCTTCCEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCC--CEEEEEcccccc---c----------------cCccccccchhccccceEE
Confidence            57999994    789999999999999  888877754321   1                1345556787766678999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHH
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQA  251 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~  251 (458)
                      ++++|...+.++++++...   |...+-++.|...+   .+.+.+++.
T Consensus        61 vi~vp~~~~~~~l~~~~~~---g~k~v~~~~g~~~~---~~~~~a~~~  102 (116)
T d1y81a1          61 VFVVPPKVGLQVAKEAVEA---GFKKLWFQPGAESE---EIRRFLEKA  102 (116)
T ss_dssp             EECSCHHHHHHHHHHHHHT---TCCEEEECTTSCCH---HHHHHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhc---CCceEEeccchhhH---HHHHHHHHc
Confidence            9999999999999887653   33344567676654   344555443

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.01  E-value=0.0027  Score=53.54  Aligned_cols=96  Identities=8%  Similarity=0.062  Sum_probs=58.4

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcC-C-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKK-S-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG-~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      |||+|||+ |..|.-+.+.|.++. + ..++..+..++.       .|....+.... .  .+....+. +..+++|++|
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~-------~gk~~~~~~~~-~--~~~~~~~~-~~~~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI-------GVPAPNFGKDA-G--MLHDAFDI-ESLKQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC-------SSBCCCSSSCC-C--BCEETTCH-HHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc-------cccccccCCcc-e--eeecccch-hhhccccEEE
Confidence            79999996 999999998887542 1 134554444321       12221111111 0  11122243 3468999999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +|+|.....++...+... ..+++||+++.-
T Consensus        70 ~alp~~~s~~~~~~l~~~-g~~~~VIDlSsd   99 (147)
T d1mb4a1          70 TCQGGSYTEKVYPALRQA-GWKGYWIDAAST   99 (147)
T ss_dssp             ECSCHHHHHHHHHHHHHT-TCCSEEEESSST
T ss_pred             EecCchHHHHHhHHHHHc-CCceEEEeCCcc
Confidence            999998877777776542 234679999853

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.00  E-value=0.00031  Score=63.08  Aligned_cols=36  Identities=39%  Similarity=0.522  Sum_probs=32.7

Q ss_pred             cCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          125 ERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       125 ~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ...+||+|||+|.+|...|..|+++|  ++|++++|+.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G--~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKG--YSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            34579999999999999999999999  9999999864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.0035  Score=51.99  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=67.8

Q ss_pred             eEEEEC-cchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEE
Q 012720          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH  205 (458)
Q Consensus       129 kI~IIG-aG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil  205 (458)
                      ||+|+| .|.||..++..+.+.. ++++. .+|+..                             ++.. ...++|+||=
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~-~~~l~~~~d~~~-----------------------------~~~~~~~~~~DvvID   50 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAAD-DLTLSAELDAGD-----------------------------PLSLLTDGNTEVVID   50 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHST-TSEEEEEECTTC-----------------------------CTHHHHTTTCSEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCC-----------------------------chhhhccccCCEEEE
Confidence            799999 5999999999887654 36655 344321                             1111 1257899999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccHH
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFAL  269 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a~  269 (458)
                      .+.+..+.+.++....   .+..+|.-+.|+..+..+.+.+.+.+  .   ....++..|++..
T Consensus        51 FS~p~~~~~~~~~~~~---~~~~~ViGTTG~~~~~~~~l~~~~~~--~---~~ipil~apNfSl  106 (135)
T d1yl7a1          51 FTHPDVVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVA--K---PNTSVLIAPNFTS  106 (135)
T ss_dssp             CCCTTTHHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHS--C---TTCEEEECSCCGG
T ss_pred             cccHHHHHHHHHHHHh---cCCCEEEeccccchhHHHHHHHHHHh--c---CCCCEEEcCCccH
Confidence            9988888888776654   36677777879987644433333221  1   1246788888753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.94  E-value=0.0015  Score=55.89  Aligned_cols=95  Identities=9%  Similarity=0.062  Sum_probs=62.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh---h-----cC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT---A-----LL  198 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e---a-----~~  198 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|+++++++++.+..++.|....+.....       ..+..+   .     -.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~-------~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNCGADVTLVVDPA-------KEEESSIIERIRSAIGD   97 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTCSEEEECCTT-------TSCHHHHHHHHHHHSSS
T ss_pred             CCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHcCCcEEEecccc-------ccccchhhhhhhccccc
Confidence            468999999999999888888888  899999999999988887664321110000       001111   1     14


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .+|+||-|+.....   ++.....++++..++.+.
T Consensus        98 g~D~vid~~g~~~~---~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          98 LPNVTIDCSGNEKC---ITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             CCSEEEECSCCHHH---HHHHHHHSCTTCEEEECS
T ss_pred             CCceeeecCCChHH---HHHHHHHHhcCCceEEEe
Confidence            68999999986542   223334455666666554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.94  E-value=0.00059  Score=55.33  Aligned_cols=34  Identities=15%  Similarity=0.400  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||+|||+|.+|.-+|..|++.|  .+|+++.|.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhcc--ccceeeehhc
Confidence            468999999999999999999998  9999999853

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.94  E-value=0.0038  Score=49.80  Aligned_cols=90  Identities=10%  Similarity=0.047  Sum_probs=57.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+||.|||+|.+|..-|+.|.+.|  .+|++++.... ....+.+.+. ...         +.-.-+.++ +.++++|+.
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~~~~~~~~~~~~~~-i~~---------~~~~~~~~d-l~~~~lv~~   78 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWANEGM-LTL---------VEGPFDETL-LDSCWLAIA   78 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHHTTTS-CEE---------EESSCCGGG-GTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCChHHHHHHhcCC-cee---------eccCCCHHH-hCCCcEEee
Confidence            579999999999999999999999  99999987643 2223333221 000         000012233 678999999


Q ss_pred             cCccccHHH-HHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSS-FLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~-vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+....+.. +.....+    ..++|++.
T Consensus        79 at~d~~~n~~i~~~a~~----~~ilVNv~  103 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAES----RRIFCNVV  103 (113)
T ss_dssp             CCSCHHHHHHHHHHHHH----TTCEEEET
T ss_pred             cCCCHHHHHHHHHHHHH----cCCEEEeC
Confidence            988766543 3333332    34556544

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.94  E-value=0.0011  Score=55.52  Aligned_cols=93  Identities=10%  Similarity=0.042  Sum_probs=69.4

Q ss_pred             hhcCCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          123 ILERTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       123 ~~~~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      ++.+.++|+|||+    |.+|..+...|.+.|  ++|+.++...+.   +                .+..+..++++.-.
T Consensus        15 ~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g--~~v~pVnP~~~~---i----------------~G~~~~~sl~dlp~   73 (139)
T d2d59a1          15 ILTRYKKIALVGASPKPERDANIVMKYLLEHG--YDVYPVNPKYEE---V----------------LGRKCYPSVLDIPD   73 (139)
T ss_dssp             HHHHCCEEEEETCCSCTTSHHHHHHHHHHHTT--CEEEEECTTCSE---E----------------TTEECBSSGGGCSS
T ss_pred             HHhcCCeEEEEeecCCCCCchHHHHHHHHHCC--CEEEEECCcccc---c----------------CCCcccccccccCc
Confidence            3434578999996    689999999999999  998888765321   1                12445568888666


Q ss_pred             CCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc
Q 012720          199 GADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       199 ~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      ..|++++++|+..+.++++++...   |...+-++.|...+
T Consensus        74 ~iD~v~i~vp~~~~~~~~~e~~~~---g~k~v~~~~G~~~e  111 (139)
T d2d59a1          74 KIEVVDLFVKPKLTMEYVEQAIKK---GAKVVWFQYNTYNR  111 (139)
T ss_dssp             CCSEEEECSCHHHHHHHHHHHHHH---TCSEEEECTTCCCH
T ss_pred             cceEEEEEeCHHHHHHHHHHHHHh---CCCEEEEeccccCH
Confidence            889999999999999999987654   33355677776654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.90  E-value=0.00039  Score=58.72  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=59.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .|||+|||+ |..|.-+.+.|.+.++ ..++..+..+...       |....+.     ...........+...++|++|
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~-------Gk~i~~~-----~~~~~~~~~~~~~~~~~d~vf   69 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA-------GQRMGFA-----ESSLRVGDVDSFDFSSVGLAF   69 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT-------TCEEEET-----TEEEECEEGGGCCGGGCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC-------Ccceeec-----cccchhccchhhhhccceEEE
Confidence            479999997 9999999999986542 2577766544321       2111110     011111111123357899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +|+|..........+..   .+..||+++.-
T Consensus        70 ~a~p~~~s~~~~~~~~~---~g~~VID~Ss~   97 (144)
T d2hjsa1          70 FAAAAEVSRAHAERARA---AGCSVIDLSGA   97 (144)
T ss_dssp             ECSCHHHHHHHHHHHHH---TTCEEEETTCT
T ss_pred             ecCCcchhhhhcccccc---CCceEEeechh
Confidence            99998777666655543   58899998853

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.89  E-value=0.0014  Score=57.07  Aligned_cols=102  Identities=13%  Similarity=0.188  Sum_probs=61.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEE-EeCCHH--HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYM-LMRDPA--VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v-~~r~~~--~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      ||||+|||+ |..|.-+.+.|.++. .+++.. ..+..+  .-+.+......   +.+. .........+......++|+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP-~~ei~~l~~~s~~~~aGk~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~dv   75 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHP-HMTITALTVSAQSNDAGKLISDLHPQ---LKGI-VDLPLQPMSDVRDFSADVDV   75 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCT-TEEEEEEEEETTCTTTTCBHHHHCGG---GTTT-CCCBEEEESCGGGTCTTCCE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCC-CCceEeeEeecccccccccccccccc---cccc-cccccccchhhhhhhcccce
Confidence            689999995 999999999999874 266653 333211  11111111100   0000 01123344455555678999


Q ss_pred             EEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          203 CLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       203 VilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|+|+|.....+....+..   .+..+|+++.-.
T Consensus        76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSadf  106 (179)
T d2g17a1          76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSGAF  106 (179)
T ss_dssp             EEECSCHHHHHHHHHHHHH---TTCEEEECSSTT
T ss_pred             eeccccchhHHHHhhhhhh---cCceeecccccc
Confidence            9999998777666655544   578899988544

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.82  E-value=0.00097  Score=63.66  Aligned_cols=92  Identities=9%  Similarity=0.055  Sum_probs=65.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ..+++|||+|.++..-...|...-.-.+|.+|+|++++++.+.+.-..          ..+.+..++++++.+||+|+.|
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~----------~~~~~~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED----------RGISASVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH----------TTCCEEECCHHHHTSSSEEEEC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHh----------cCCccccchhhhhccccEEEEe
Confidence            468999999999999998887653225899999999988877653211          0122334566778999999999


Q ss_pred             Ccccc-HHHHHHhhhhcCCCCCeEEEec
Q 012720          207 MPVQF-SSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~-v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +++.. +-     -...+++|+.|..+.
T Consensus       195 T~s~~P~~-----~~~~l~~G~hv~~iG  217 (320)
T d1omoa_         195 TPSRKPVV-----KAEWVEEGTHINAIG  217 (320)
T ss_dssp             CCCSSCCB-----CGGGCCTTCEEEECS
T ss_pred             ccCccccc-----chhhcCCCCeEeecC
Confidence            99632 21     134678898877664

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=96.71  E-value=0.0033  Score=56.98  Aligned_cols=101  Identities=11%  Similarity=-0.025  Sum_probs=62.5

Q ss_pred             CCeEEEECcchHHHHHHH----HHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--C
Q 012720          127 TNKVVVLGGGSFGTAMAA----HVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--G  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~----~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~  199 (458)
                      .+||||||+|.+|..++.    .+.+...+.+|. +++++.+.++.+.+....          +.....++.++.+.  +
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~   85 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQL----------KHATGFDSLESFAQYKD   85 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTC----------TTCEEESCHHHHHHCTT
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhccc----------ccceeecchhhcccccc
Confidence            479999999986654443    343322126766 789999888777654210          12345678888764  6


Q ss_pred             CCEEEEcCccccHHHHHHhhhhc---CCCCCeEEEeccCCCc
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDY---VDPGLPFISLSKGLEL  238 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~---l~~~~ivV~~snGi~~  238 (458)
                      .|+|++|+|.....+......+.   ...+.. |.+-|-+..
T Consensus        86 iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~-V~~EKPla~  126 (237)
T d2nvwa1          86 IDMIVVSVKVPEHYEVVKNILEHSSQNLNLRY-LYVEWALAA  126 (237)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSSSCSSCCE-EEEESSSSS
T ss_pred             cceeeccCCCcchhhHHHHHHHhcccccCCce-EEEeccccC
Confidence            79999999987666555443321   122333 446666654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.69  E-value=0.0029  Score=56.15  Aligned_cols=87  Identities=14%  Similarity=0.081  Sum_probs=60.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVil  205 (458)
                      .++|+|-|.|++|..+|..|.+.|  ..|+++|.+.+.++.....+.              ... +.++.+ .+||+++-
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~G--akvvv~d~d~~~~~~~~~~g~--------------~~~-~~~~~~~~~~DI~iP   89 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAG--AQLLVADTDTERVAHAVALGH--------------TAV-ALEDVLSTPCDVFAP   89 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC--------------EEC-CGGGGGGCCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEecchHHHHHHHHhhcc--------------ccc-Cccccccccceeeec
Confidence            579999999999999999999999  999999999988777665432              122 344544 37898887


Q ss_pred             cCcccc-HHHHHHhhhhcCCCCCeEEEeccC
Q 012720          206 AMPVQF-SSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       206 aVp~~~-v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      |--... ..+.++.+    + -.+|+...|+
T Consensus        90 cA~~~~I~~~~a~~i----~-ak~i~e~AN~  115 (201)
T d1c1da1          90 CAMGGVITTEVARTL----D-CSVVAGAANN  115 (201)
T ss_dssp             CSCSCCBCHHHHHHC----C-CSEECCSCTT
T ss_pred             ccccccccHHHHhhh----h-hheeeccCCC
Confidence            654333 44444444    2 2456555554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.50  E-value=0.0011  Score=62.97  Aligned_cols=40  Identities=23%  Similarity=0.347  Sum_probs=34.7

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      |..++||+|||+|.-|.++|..|++.|.+++|+++.|+..
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            5567899999999999999999998774479999999863

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.49  E-value=0.0023  Score=52.73  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      +.++|+|||+    |.+|..+.++|.+.| ..+|+.++...+.   +                .++....+++|.-...|
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~---i----------------~G~~~y~sl~dlp~~vD   66 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEE---V----------------QGVKAYKSVKDIPDEID   66 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSE---E----------------TTEECBSSTTSCSSCCS
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCccc---c----------------CCeEeecchhhcCCCCc
Confidence            3578999997    899999999997655 4688888775421   1                13455667777666789


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      ++++++|+..+.++++++.+.=-  ..++.++.|+..
T Consensus        67 lvvi~vp~~~~~~~~~~~~~~g~--~~~vi~s~Gf~e  101 (129)
T d2csua1          67 LAIIVVPKRFVKDTLIQCGEKGV--KGVVIITAGFGE  101 (129)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTC--CEEEECCCSSTT
T ss_pred             eEEEecChHHhHHHHHHHHHcCC--CEEEEecccccc
Confidence            99999999999999988765311  234556767754

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.49  E-value=0.0031  Score=52.33  Aligned_cols=92  Identities=14%  Similarity=0.097  Sum_probs=67.5

Q ss_pred             CCCeEEEECc----chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCC
Q 012720          126 RTNKVVVLGG----GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGa----G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aD  201 (458)
                      ..++|+|||+    +.+|..+...|.+.|  +++..+..++.. +.+                .+.....++.+.-...|
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g--~~~~~v~~~~~~-~~i----------------~g~~~~~~l~~i~~~iD   72 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQG--YRVLPVNPRFQG-EEL----------------FGEEAVASLLDLKEPVD   72 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTT--CEEEEECGGGTT-SEE----------------TTEECBSSGGGCCSCCS
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCC--CCceEEEecccc-cee----------------eceecccchhhccCCCc
Confidence            3578999997    899999999999999  999998875421 000                13455567777656789


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcc
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      ++++++|+..+.++++++... ..+.  +-++.|...+
T Consensus        73 ~v~v~~p~~~v~~~v~~~~~~-g~k~--i~~q~G~~~~  107 (136)
T d1iuka_          73 ILDVFRPPSALMDHLPEVLAL-RPGL--VWLQSGIRHP  107 (136)
T ss_dssp             EEEECSCHHHHTTTHHHHHHH-CCSC--EEECTTCCCH
T ss_pred             eEEEeccHHHHHHHHHHHHhh-CCCe--EEEecCccCH
Confidence            999999999988888887654 2233  3357787654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.0019  Score=56.01  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=38.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHHHHHHHHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPAVCQSINEKHC  173 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~~~e~l~~~g~  173 (458)
                      ..+|.|+|+|.+|......+...|  . +|++.++++++.+.+++.|.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~lGa   74 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEIGA   74 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCEEEEECCCccchhheecccccc--cccccccccccccccccccccc
Confidence            468999999999998888887777  6 79999999999988887664

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.45  E-value=0.00092  Score=60.38  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=31.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |||+|||+|.-|...|..|+++|  ++|+++.+++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G--~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            78999999999999999999999  9999999865

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.40  E-value=0.0027  Score=55.32  Aligned_cols=99  Identities=15%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEE-eCCHH-HHHHHHhhcCCCccCCCCC----CCCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPA-VCQSINEKHCNCRYFPEQK----LPENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~-~r~~~-~~e~l~~~g~~~~~~~~~~----l~~~i~a~~~~~ea~~~a  200 (458)
                      |-||+|.|.|++|..+++.+.+++ +.+|..+ ++.+. ....+...+... +.....    ...++....+..++..++
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~-dievVaInd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~g~~~~~~~~v   78 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQP-DMKLVGVAKTSPNYEAFIAHRRGIRI-YVPQQSIKKFEESGIPVAGTVEDLIKTS   78 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSSCSHHHHHHHHTTCCE-ECCGGGHHHHHTTTCCCCCCHHHHHHHC
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCC-CCEEEEEECCCCcHHHHHhcccCcce-eccCccceeccccceecCCchhhhhhcC
Confidence            458999999999999999999875 3677755 44432 233333322110 000000    011222334566666789


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEE
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFI  230 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV  230 (458)
                      |+||-|++.....+-++   .+++.|..+|
T Consensus        79 DiViecTG~f~~~e~a~---~hl~~G~KvI  105 (178)
T d1b7go1          79 DIVVDTTPNGVGAQYKP---IYLQLQRNAI  105 (178)
T ss_dssp             SEEEECCSTTHHHHHHH---HHHHTTCEEE
T ss_pred             CEEEECCCCcCCHHHHH---HHHHcCCEEE
Confidence            99999999765444333   3333454444

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.016  Score=48.35  Aligned_cols=72  Identities=11%  Similarity=0.070  Sum_probs=49.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh----hcCCCccCCCCCCCCceEEeCCH---Hh-hcCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE----KHCNCRYFPEQKLPENVIATTDA---KT-ALLG  199 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~----~g~~~~~~~~~~l~~~i~a~~~~---~e-a~~~  199 (458)
                      -+|.|+|+|.+|..++..|.+.|  ++|++++.+++......+    .+.... .++.         +++   ++ -+.+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~--~~v~vId~d~~~~~~~~~~~~~~~~~vi-~Gd~---------~d~~~L~~a~i~~   71 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDDIKQLEQRLGDNADVI-PGDS---------NDSSVLKKAGIDR   71 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHCTTCEEE-ESCT---------TSHHHHHHHTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC--CCEEEEeccchhHHHHHHHhhcCCcEEE-EccC---------cchHHHHHhcccc
Confidence            36999999999999999999998  999999998764332222    221110 0110         122   22 2568


Q ss_pred             CCEEEEcCcccc
Q 012720          200 ADYCLHAMPVQF  211 (458)
Q Consensus       200 aDiVilaVp~~~  211 (458)
                      ||.+|++++.+.
T Consensus        72 a~~vi~~~~~d~   83 (153)
T d1id1a_          72 CRAILALSDNDA   83 (153)
T ss_dssp             CSEEEECSSCHH
T ss_pred             CCEEEEccccHH
Confidence            999999999754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0026  Score=55.23  Aligned_cols=99  Identities=22%  Similarity=0.218  Sum_probs=61.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc--CCCccCCCCCCCCceEEe--CC---HHhhcCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH--CNCRYFPEQKLPENVIAT--TD---AKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g--~~~~~~~~~~l~~~i~a~--~~---~~ea~~~  199 (458)
                      .++|.|||+|.+|.+++..|.+.|. .++++++|+.+.++++...-  ....      .+..+...  .+   ..+.+.+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~   90 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN------TDCVVTVTDLADQQAFAEALAS   90 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH------SSCEEEEEETTCHHHHHHHHHT
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh------cCcceEeeecccccchhhhhcc
Confidence            4799999999999999999999983 58999999876555432210  0000      00011121  12   2344678


Q ss_pred             CCEEEEcCccccH----HHHHHhhhhcCCCCCeEEEec
Q 012720          200 ADYCLHAMPVQFS----SSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       200 aDiVilaVp~~~v----~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      +|+||-|+|....    +.+... ...++++.+++++.
T Consensus        91 ~diiIN~Tp~G~~~~~~~~~~~~-~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          91 ADILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV  127 (182)
T ss_dssp             CSEEEECSSTTSTTSCSCCSCCC-GGGSCTTCEEEECC
T ss_pred             cceeccccCCccccccchhhhhH-HHhhhcchhhHHhh
Confidence            9999999995321    111111 23467788888886

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.19  E-value=0.002  Score=56.39  Aligned_cols=78  Identities=21%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|.|.| .|.+|..+|..|++.|  .+|++.+|+.++.+.+.+.-.......  ..+..+.-..+.+++++++|++|.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKLDKAQAAADSVNKRFKVN--VTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHHTCC--CEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhc--cchhhcccchHHHHHHHHHHHhccchh--hhhhhcccHHHHHHHhcCcCeeee
Confidence            57899999 5999999999999999  999999999988776654311000000  000000111234455678888887


Q ss_pred             cCc
Q 012720          206 AMP  208 (458)
Q Consensus       206 aVp  208 (458)
                      +..
T Consensus        99 ~Ag  101 (191)
T d1luaa1          99 AGA  101 (191)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0021  Score=56.01  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=32.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .+||+|||+|.-|...|..|+++|  |+|++|++.++
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G--~~Vtl~E~~~~   77 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSE   77 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSS
T ss_pred             CcEEEEECccHHHHHHHHHHHhhc--cceEEEeccCc
Confidence            579999999999999999999999  99999998763

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.17  E-value=0.002  Score=55.58  Aligned_cols=35  Identities=17%  Similarity=0.335  Sum_probs=31.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~~  163 (458)
                      .+||+|||+|..|...|..|++.|  + +|+++++.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G--~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLG--YSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCC--CCeEEEEEecCc
Confidence            579999999999999999999999  7 5999998763

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.13  E-value=0.004  Score=53.71  Aligned_cols=100  Identities=16%  Similarity=0.271  Sum_probs=61.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      .++|.|||+|.++.+++..|.+.|   +|++++|+.++++.+.+.-.. ....  .....+. ..+.+....++|++|-|
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~-~~~~--~~~~~~~-~~~~~~~~~~~dliIn~   90 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAE-KLNK--KFGEEVK-FSGLDVDLDGVDIIINA   90 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHH-HHTC--CHHHHEE-EECTTCCCTTCCEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHH-hhch--hhhhhhh-hhhhhhccchhhhhccC
Confidence            578999999999999999997654   899999999988877542100 0000  0000112 22444556789999999


Q ss_pred             CccccHHHHHH--hh-hhcCCCCCeEEEec
Q 012720          207 MPVQFSSSFLE--GI-SDYVDPGLPFISLS  233 (458)
Q Consensus       207 Vp~~~v~~vl~--~i-~~~l~~~~ivV~~s  233 (458)
                      +|.......-.  .+ ...+.++.+++++.
T Consensus        91 tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~  120 (177)
T d1nvta1          91 TPIGMYPNIDVEPIVKAEKLREDMVVMDLI  120 (177)
T ss_dssp             SCTTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred             CcccccccccccchhhhhccCcccceeeec
Confidence            99632111000  01 22345566777765

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.11  E-value=0.002  Score=58.01  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||+|||+|.-|..+|..|+++|  ++|++++|.+
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G--~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            579999999999999999999999  9999999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.06  E-value=0.0055  Score=49.84  Aligned_cols=93  Identities=16%  Similarity=0.186  Sum_probs=58.6

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEEcC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLHAM  207 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVilaV  207 (458)
                      .|.|+|.|.+|..++..|.  +  ++|.+++.+++.++.+...|....+ ++..-+      ..+.+ -+.+|+.+|+++
T Consensus         2 HivI~G~g~~g~~l~~~L~--~--~~i~vi~~d~~~~~~~~~~~~~~i~-Gd~~~~------~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--G--SEVFVLAEDENVRKKVLRSGANFVH-GDPTRV------SDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--G--GGEEEEESCTTHHHHHHHTTCEEEE-SCTTSH------HHHHHTTCTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHc--C--CCCEEEEcchHHHHHHHhcCccccc-cccCCH------HHHHHhhhhcCcEEEEec
Confidence            5889999999999999994  5  7889999999998888876643211 111000      01222 257899999999


Q ss_pred             ccccHHHHH-HhhhhcCCCCCeEEEec
Q 012720          208 PVQFSSSFL-EGISDYVDPGLPFISLS  233 (458)
Q Consensus       208 p~~~v~~vl-~~i~~~l~~~~ivV~~s  233 (458)
                      +.+...-.+ ..++. +.+...++...
T Consensus        71 ~~d~~n~~~~~~~r~-~~~~~~iia~~   96 (129)
T d2fy8a1          71 ESDSETIHCILGIRK-IDESVRIIAEA   96 (129)
T ss_dssp             SSHHHHHHHHHHHHH-HCSSSCEEEEC
T ss_pred             cchhhhHHHHHHHHH-HCCCceEEEEE
Confidence            875533323 33333 33443344333

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.05  E-value=0.012  Score=53.54  Aligned_cols=84  Identities=13%  Similarity=0.161  Sum_probs=56.2

Q ss_pred             CeEEEE-Cc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          128 NKVVVL-GG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       128 ~kI~II-Ga-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      +||++| |+ +.+|.++|..|++.|  ++|.+.+|+++.++++.++                     +.+  .+.+++.+
T Consensus         1 KKValITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~---------------------i~~--~g~~~~~~   55 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDG--FAVAIADYNDATAKAVASE---------------------INQ--AGGHAVAV   55 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence            577665 65 679999999999999  9999999999887766542                     111  11223333


Q ss_pred             cCc---cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMP---VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp---~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+-   ..+++.+++.+.....+=.++|+.. |+.
T Consensus        56 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA-G~~   89 (255)
T d1gega_          56 KVDVSDRDQVFAAVEQARKTLGGFDVIVNNA-GVA   89 (255)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHTTCCCEEEECC-CCC
T ss_pred             EeeCCCHHHHHHHHHHHHHHhCCccEEEecc-ccc
Confidence            222   3457777777776665545777765 554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.02  E-value=0.0024  Score=58.68  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=31.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||+|||+|.-|...|..|+++|  ++|+++++.+
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G--~~V~vlE~~~   63 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASE   63 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence            479999999999999999999999  9999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.91  E-value=0.0027  Score=57.05  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |||+|||+|.-|...|..|+++|  ++|+++++++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G--~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            68999999999999999999999  9999998764

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.90  E-value=0.0069  Score=52.27  Aligned_cols=103  Identities=18%  Similarity=0.140  Sum_probs=58.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEE-EeCCHH-HHHHHHhhcCCCccCCCCCC----CCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYM-LMRDPA-VCQSINEKHCNCRYFPEQKL----PENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v-~~r~~~-~~e~l~~~g~~~~~~~~~~l----~~~i~a~~~~~ea~~~a  200 (458)
                      ++||+|.|.|++|..+.+.+.+.. +.+|.. .+..+. .+..+.+.+...........    ..++....+..++..++
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~-dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQD-DMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCC-CceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            579999999999999999998765 366654 455443 33344443321100000000    01122223566667789


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |+||-|++..-..+-++   .+++.|...|..+
T Consensus        81 DvViEcTG~f~~~~~~~---~hl~~G~k~Vi~s  110 (172)
T d2czca2          81 DIIVDATPGGIGAKNKP---LYEKAGVKAIFQG  110 (172)
T ss_dssp             SEEEECCSTTHHHHHHH---HHHHHTCEEEECT
T ss_pred             CEEEECCCCCCCHHHHH---HHHHcCCCEEEEC
Confidence            99999999766554443   3334455444443

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.88  E-value=0.0032  Score=59.52  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=32.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .+||+|||+|--|...|..|+++|  ++|+++.++..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G--~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCC--CCEEEEECCCC
Confidence            579999999999999999999999  99999998763

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.85  E-value=0.0052  Score=52.93  Aligned_cols=92  Identities=15%  Similarity=0.076  Sum_probs=58.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh----c--CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA----L--LGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea----~--~~a  200 (458)
                      ..+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|........         ..+..+.    .  ..+
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa~~~i~~~---------~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGATDILNYK---------NGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTCSEEECGG---------GSCHHHHHHHHTTTSCE
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhhCcccccccc---------chhHHHHHHHHhhccCc
Confidence            4689999999999987777777672 3799999999988888877642110000         0122221    1  348


Q ss_pred             CEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEe
Q 012720          201 DYCLHAMPVQF-SSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       201 DiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |+||-|+.... ++..++-+    +++..++.+
T Consensus        98 D~vid~~g~~~~~~~a~~~~----~~~G~iv~~  126 (174)
T d1jqba2          98 DRVIMAGGGSETLSQAVKMV----KPGGIISNI  126 (174)
T ss_dssp             EEEEECSSCTTHHHHHHHHE----EEEEEEEEC
T ss_pred             ceEEEccCCHHHHHHHHHHH----hcCCEEEEE
Confidence            99999998754 44444333    344445443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.85  E-value=0.0044  Score=54.00  Aligned_cols=100  Identities=18%  Similarity=0.329  Sum_probs=56.6

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      +++||+|||+ |..|.-+.+.|.++- .+++..+..+...-..+.+....   +.....+   ......++...++|++|
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP-~~ei~~l~S~~~aG~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~Dvvf   76 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHP-QFRIKVMTADRKAGEQFGSVFPH---LITQDLP---NLVAVKDADFSNVDAVF   76 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCS-SEEEEEEECSTTTTSCHHHHCGG---GTTSCCC---CCBCGGGCCGGGCSEEE
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCC-CceEEEEeccccCCCcccccccc---ccccccc---cchhhhhhhhcccceee
Confidence            4579999996 999999999999874 36766554332211112111100   0011111   01112233457899999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +|+|.....++...+.    +...+|+.+.+.
T Consensus        77 ~alp~~~s~~~~~~l~----~~~~~v~~~~~~  104 (183)
T d2cvoa1          77 CCLPHGTTQEIIKGLP----QELKIVDLSADF  104 (183)
T ss_dssp             ECCSSSHHHHHHHTSC----SSCEEEECSSTT
T ss_pred             eccccchHHHHHHHHH----hcCcccccchhh
Confidence            9999887776665443    344555555443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.00079  Score=58.03  Aligned_cols=92  Identities=14%  Similarity=0.148  Sum_probs=54.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDiVi  204 (458)
                      ++||+|||+|.||...+..|.+......+.+++.....  ....             ..... ..+.++++.  +.|+|+
T Consensus         7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~-------------~~~~~-~~~~~e~l~~~~iD~V~   70 (172)
T d1lc0a1           7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGS-------------LDEVR-QISLEDALRSQEIDVAY   70 (172)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCE-------------ETTEE-BCCHHHHHHCSSEEEEE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHH-------------hhccC-cCCHHHHHhCCCcchhh
Confidence            57999999999999988888654211234444432210  0000             00122 236677654  679999


Q ss_pred             EcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          205 HAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +|+|.....+++....+   .|.. |.+-|-+..
T Consensus        71 I~tp~~~H~~~~~~al~---~gk~-V~~EKP~a~  100 (172)
T d1lc0a1          71 ICSESSSHEDYIRQFLQ---AGKH-VLVEYPMTL  100 (172)
T ss_dssp             ECSCGGGHHHHHHHHHH---TTCE-EEEESCSCS
T ss_pred             hcccccccccccccccc---cchh-hhcCCCccc
Confidence            99999887777666544   2444 335554443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.79  E-value=0.00072  Score=60.26  Aligned_cols=26  Identities=31%  Similarity=0.492  Sum_probs=24.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKV  155 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V  155 (458)
                      |||+|||+|.+|...|..|+++|  ++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G--~~v   26 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERY--HSV   26 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHH--TTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCC--CCc
Confidence            79999999999999999999999  654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.77  E-value=0.0082  Score=50.76  Aligned_cols=45  Identities=18%  Similarity=0.112  Sum_probs=39.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~  173 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|++.++++++.+..++.|.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~Ga   72 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKLGA   72 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTTC
T ss_pred             CCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhccCc
Confidence            468999999999999888777777  899999999999888887664

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.73  E-value=0.014  Score=49.82  Aligned_cols=76  Identities=12%  Similarity=0.072  Sum_probs=52.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-----CCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-----LGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-----~~aD  201 (458)
                      ..+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|....+...         ..+..+.+     ..+|
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga~~~i~~~---------~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGATHVINSK---------TQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHTTSCEE
T ss_pred             CCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCCeEEEeCC---------CcCHHHHHHHHcCCCCc
Confidence            4689999999999999988888772 4566779999888888887643211000         01222221     2479


Q ss_pred             EEEEcCccccH
Q 012720          202 YCLHAMPVQFS  212 (458)
Q Consensus       202 iVilaVp~~~v  212 (458)
                      +||.|+.....
T Consensus        99 ~vid~~G~~~~  109 (174)
T d1f8fa2          99 FALESTGSPEI  109 (174)
T ss_dssp             EEEECSCCHHH
T ss_pred             EEEEcCCcHHH
Confidence            99999986543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.67  E-value=0.0055  Score=49.00  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=32.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .++|.|||+|.+|.-+|..|++.|  .+|+++.|.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccc--cEEEEEEecce
Confidence            468999999999999999999999  99999987763

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0094  Score=50.67  Aligned_cols=95  Identities=12%  Similarity=0.052  Sum_probs=59.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH-hhcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK-TALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~-ea~~~aDiVil  205 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|+++++++++.+..++.|.+..+... .       ..+.. ......|+++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~lGa~~~i~~~-~-------~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKMGADHYIATL-E-------EGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHHTCSEEEEGG-G-------TSCHHHHSCSCEEEEEE
T ss_pred             CCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhccCCcEEeecc-c-------hHHHHHhhhcccceEEE
Confidence            468999999999998777776777  8999999999988888887743211000 0       01112 23456799999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |+....-. .+......++++-.++.+
T Consensus        98 ~~~~~~~~-~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          98 CASSLTDI-DFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             CCSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred             EecCCccc-hHHHHHHHhhccceEEEe
Confidence            87753211 022233444454455444

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.63  E-value=0.027  Score=51.39  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=57.4

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|.| ++.||.++|..|++.|  ++|.+.+|+++.++.+.+.-                     .+.  ..++.++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G--~~V~i~~r~~~~l~~~~~~~---------------------~~~--~~~~~~~   60 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLG--ARVYTCSRNEKELDECLEIW---------------------REK--GLNVEGS   60 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---------------------HHT--TCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH---------------------Hhc--CCCceEE
Confidence            57899999 5889999999999999  99999999998777665431                     111  1122222


Q ss_pred             cC---ccccHHHHHHhhhhcC-CCCCeEEEeccCCC
Q 012720          206 AM---PVQFSSSFLEGISDYV-DPGLPFISLSKGLE  237 (458)
Q Consensus       206 aV---p~~~v~~vl~~i~~~l-~~~~ivV~~snGi~  237 (458)
                      .+   ...+++++++++.+.. .+..++|+.. |+.
T Consensus        61 ~~D~s~~~~~~~~~~~~~~~~~g~idilinna-g~~   95 (258)
T d1ae1a_          61 VCDLLSRTERDKLMQTVAHVFDGKLNILVNNA-GVV   95 (258)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTTSCCCEEEECC-CCC
T ss_pred             EeecCCHHHHHHHHHHHHHHhCCCcEEEeccc-ccc
Confidence            22   2356777777777665 3455777665 443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.57  E-value=0.005  Score=54.68  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .||+|||+|.-|...|..|.+++.+++|++|++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            589999999999999999988754589999998763

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.56  E-value=0.025  Score=51.42  Aligned_cols=83  Identities=13%  Similarity=0.231  Sum_probs=55.3

Q ss_pred             eEEEE-C-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          129 KVVVL-G-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       129 kI~II-G-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||++| | ++.+|.++|..|+++|  ++|.+.+|+++.++++.++                     +.+  .+.++..+.
T Consensus         3 KValITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~---------------------l~~--~g~~~~~~~   57 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEG--LRVFVCARGEEGLRTTLKE---------------------LRE--AGVEADGRT   57 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEEE
Confidence            56555 6 5789999999999999  9999999999887766542                     111  112222222


Q ss_pred             C---ccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 M---PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 V---p~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +   ...+++.+++.+.....+=.++|... |+.
T Consensus        58 ~Dvs~~~~v~~~~~~~~~~~g~iDilVnnA-G~~   90 (257)
T d2rhca1          58 CDVRSVPEIEALVAAVVERYGPVDVLVNNA-GRP   90 (257)
T ss_dssp             CCTTCHHHHHHHHHHHHHHTCSCSEEEECC-CCC
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCCEEEecc-ccc
Confidence            2   23567778888776665545777765 543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.55  E-value=0.0063  Score=51.40  Aligned_cols=92  Identities=16%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             eEEEECc-chHHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          129 KVVVLGG-GSFGTAMAAHVANKKS-QLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       129 kI~IIGa-G~mG~~iA~~La~aG~-~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||+|||+ |..|.-+-+.|.++.+ ..++.++..++.       .|....+.     ..........++...+.|+++++
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s-------~G~~~~~~-----~~~~~~~~~~~~~~~~~d~~f~~   70 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-------AGKSLKFK-----DQDITIEETTETAFEGVDIALFS   70 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG-------TTCEEEET-----TEEEEEEECCTTTTTTCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc-------cccccccc-----CCcccccccchhhhhhhhhhhhc
Confidence            7999997 9999999999988752 134444443321       12111100     01122222333446789999999


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKG  235 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snG  235 (458)
                      +|.............   .+..||+++.-
T Consensus        71 ~~~~~s~~~~~~~~~---~~~~VIDlSsd   96 (154)
T d2gz1a1          71 AGSSTSAKYAPYAVK---AGVVVVDNTSY   96 (154)
T ss_dssp             SCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred             cCccchhhHHhhhcc---ccceehhcChh
Confidence            998766665554433   68899999853

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0058  Score=49.48  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=31.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+|++|||+|.+|.=+|..|++.|  .+|+++.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG--~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhC--cceeEEEecc
Confidence            468999999999999999999999  9999998765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.47  E-value=0.0081  Score=48.55  Aligned_cols=34  Identities=24%  Similarity=0.567  Sum_probs=31.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|+|||+|.+|.-+|..|++.|  .+|+++.+.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAG--VHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhccc--ceEEEEeecc
Confidence            579999999999999999999999  9999998776

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0066  Score=52.03  Aligned_cols=72  Identities=17%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             CCeEEEECcch-HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGGS-FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~-mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||-+. +|.++|..|.+.|  ..|++++....                            ++.+.++++|+||.
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~g--atVt~~h~~t~----------------------------~l~~~~~~ADivI~   86 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAG--CTTTVTHRFTK----------------------------NLRHHVENADLLIV   86 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTT--CEEEEECSSCS----------------------------CHHHHHHHCSEEEE
T ss_pred             cceEEEEeccccccHHHHHHHHHhh--ccccccccccc----------------------------hhHHHHhhhhHhhh
Confidence            68999999766 9999999999998  89998865431                            44556788999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+-     -...+++++++|++.
T Consensus        87 a~G~p~~i-----~~~~vk~g~vvIDvG  109 (166)
T d1b0aa1          87 AVGKPGFI-----PGDWIKEGAIVIDVG  109 (166)
T ss_dssp             CSCCTTCB-----CTTTSCTTCEEEECC
T ss_pred             hccCcccc-----cccccCCCcEEEecC
Confidence            99854321     145778999999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.42  E-value=0.0045  Score=56.19  Aligned_cols=32  Identities=28%  Similarity=0.493  Sum_probs=30.1

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .|.|||+|.+|++.|..|+++|  ++|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G--~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKEN--KNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            4999999999999999999999  9999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.012  Score=49.87  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH---hhcCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK---TALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~---ea~~~aDiV  203 (458)
                      ..+|.|+|+|.+|...+..+...|  .++++.++++++.+..++.|....+           -..+..   ...+.+|++
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~lGad~~i-----------~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKALGADEVV-----------NSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHHTCSEEE-----------ETTCHHHHHTTTTCEEEE
T ss_pred             CCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhccCCcEEE-----------ECchhhHHHHhcCCCcee
Confidence            468999999999998887777777  8999999999888877776643111           111211   223578999


Q ss_pred             EEcCcccc-HHHHHHhhhhcCCCCCeEEEe
Q 012720          204 LHAMPVQF-SSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       204 ilaVp~~~-v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |.|+.... +...++    .+.++-.++.+
T Consensus        98 id~~g~~~~~~~~~~----~l~~~G~iv~~  123 (168)
T d1uufa2          98 LNTVAAPHNLDDFTT----LLKRDGTMTLV  123 (168)
T ss_dssp             EECCSSCCCHHHHHT----TEEEEEEEEEC
T ss_pred             eeeeecchhHHHHHH----HHhcCCEEEEe
Confidence            99998643 554433    33344445444

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.39  E-value=0.02  Score=49.20  Aligned_cols=102  Identities=20%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEE-eCCHH-HHHHHHhhcCCCcc-CCCCC--C-CCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML-MRDPA-VCQSINEKHCNCRY-FPEQK--L-PENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~-~r~~~-~~e~l~~~g~~~~~-~~~~~--l-~~~i~a~~~~~ea~~~a  200 (458)
                      |+||+|-|.|++|..+.+.+.+.+ +.+|..+ ++.+. ....+...+..... .++..  . ..++....+..++.+++
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~-di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQD-DMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSS-SEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCC-CceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence            568999999999999999998876 3666644 45432 22233332211100 00000  0 01122223455666789


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |+||-|++..-..+-++   .+++.|..+|..
T Consensus        80 DvViEcTG~f~~~~~~~---~hl~~G~K~vi~  108 (171)
T d1cf2o1          80 DIVIDCTPEGIGAKNLK---MYKEKGIKAIFQ  108 (171)
T ss_dssp             SEEEECCSTTHHHHHHH---HHHHTTCEEEEC
T ss_pred             CEEEEccCCCCCHHHHH---HHHHcCCCEEEE
Confidence            99999999865544333   344445555533

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0072  Score=48.35  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||.|||+|..|.-+|..|++.|  ++|+++.|.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G--~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccc--cEEEEEeecc
Confidence            468999999999999999999999  9999999865

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.37  E-value=0.024  Score=51.04  Aligned_cols=110  Identities=10%  Similarity=0.058  Sum_probs=71.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-cCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-LLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-~~~aDiVil  205 (458)
                      .++|+|-|.|++|..+|..|.+.|  ..|++.+.+...++.+.....             .... +.++. -.+||+++-
T Consensus        39 g~~v~IqG~GnVG~~~a~~L~~~G--akvv~~d~~~~~~~~~~~~~g-------------~~~~-~~~~~~~~~cDIl~P  102 (230)
T d1leha1          39 GLAVSVQGLGNVAKALCKKLNTEG--AKLVVTDVNKAAVSAAVAEEG-------------ADAV-APNAIYGVTCDIFAP  102 (230)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHC-------------CEEC-CGGGTTTCCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEeecccHHHHHHHHHhcC-------------Cccc-CCcccccccccEecc
Confidence            579999999999999999999999  999999999988777665321             1122 33343 347999998


Q ss_pred             cCcccc-HHHHHHhhhhcCCCCCeEEEec-cCCCcchhhhHHHHHHHHhCCCCCCEEEEECcccH
Q 012720          206 AMPVQF-SSSFLEGISDYVDPGLPFISLS-KGLELNTLRMMSQIIPQALRNPRQPFIALSGPSFA  268 (458)
Q Consensus       206 aVp~~~-v~~vl~~i~~~l~~~~ivV~~s-nGi~~~t~~~l~e~l~~~lg~~~~~~~vl~gP~~a  268 (458)
                      |--... .++.+..|.     -.+|+... |++...   ...+.+.+. |       ++..|.+.
T Consensus       103 cA~~~~I~~~~~~~l~-----ak~Ive~ANn~~t~~---ea~~~L~~r-G-------I~~iPD~l  151 (230)
T d1leha1         103 CALGAVLNDFTIPQLK-----AKVIAGSADNQLKDP---RHGKYLHEL-G-------IVYAPDYV  151 (230)
T ss_dssp             CSCSCCBSTTHHHHCC-----CSEECCSCSCCBSSH---HHHHHHHHH-T-------CEECCHHH
T ss_pred             cccccccChHHhhccC-----ccEEEecccCCCCCc---hHHHHHHhh-C-------cEEEeehh
Confidence            876543 333344432     24666666 444321   223455554 3       35666544

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.36  E-value=0.004  Score=50.39  Aligned_cols=34  Identities=24%  Similarity=0.562  Sum_probs=31.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|||+|.+|.-+|..|++.|  ++|+++.+.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhccc--ceEEEEeccc
Confidence            478999999999999999999999  9999998865

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.013  Score=50.32  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .++|+|||-+ .+|.++|..|++.|  ..|++++....                            ++.+.++++|++|.
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~g--atVt~~~~~t~----------------------------~l~~~~~~aDivi~   88 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNN--ATVTTCHSKTA----------------------------HLDEEVNKGDILVV   88 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTT--CEEEEECTTCS----------------------------SHHHHHTTCSEEEE
T ss_pred             cceEEEEecCCccchHHHHHHHhcc--CceEEEecccc----------------------------cHHHHHhhccchhh
Confidence            6799999975 49999999999998  89998876432                            44455789999999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++....+-     -..+++++.+||++.
T Consensus        89 a~G~~~~i-----~~~~vk~g~iviDvg  111 (170)
T d1a4ia1          89 ATGQPEMV-----KGEWIKPGAIVIDCG  111 (170)
T ss_dssp             CCCCTTCB-----CGGGSCTTCEEEECC
T ss_pred             cccccccc-----ccccccCCCeEeccC
Confidence            99864431     145788999999884

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.011  Score=47.17  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=35.9

Q ss_pred             cchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          120 KTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       120 ~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      ++++.....||+|||.|..|.-||....+-|  ++|.++|.+++
T Consensus         4 ~~~~~~~~~kigIlGgGQL~rMla~aA~~lG--~~v~v~d~~~~   45 (111)
T d1kjqa2           4 GTALRPAATRVMLLGSGELGKEVAIECQRLG--VEVIAVDRYAD   45 (111)
T ss_dssp             CCTTSTTCCEEEEESCSHHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred             CCCCCCCCCEEEEEeCCHHHHHHHHHHHHCC--CEEEEEcCCCC
Confidence            4455555679999999999999999999888  99999998864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.039  Score=49.83  Aligned_cols=85  Identities=16%  Similarity=0.107  Sum_probs=57.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.|.|-|+ +.+|..+|..|+++|  .+|.+++|++++++.+.++-                     .+  ...++..+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G--~~V~l~~r~~~~l~~~~~~~---------------------~~--~~~~~~~~   61 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLK--SKLVLWDINKHGLEETAAKC---------------------KG--LGAKVHTF   61 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---------------------HH--TTCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH---------------------Hh--cCCcEEEE
Confidence            345666686 669999999999999  99999999999888776531                     11  12233333


Q ss_pred             cCc---cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMP---VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp---~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+-   .+.++.+++.+.....+-.++|... |+.
T Consensus        62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinna-g~~   95 (244)
T d1yb1a_          62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNA-GVV   95 (244)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCCCSEEEECC-CCC
T ss_pred             EeeCCCHHHHHHHHHHHHHHcCCCceeEeec-ccc
Confidence            222   2457777887777666666777666 544

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.25  E-value=0.014  Score=50.87  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=47.2

Q ss_pred             CCCeEEEEC-cchHHHHHHHHHHhcCCCCeEE--EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCE
Q 012720          126 RTNKVVVLG-GGSFGTAMAAHVANKKSQLKVY--MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADY  202 (458)
Q Consensus       126 ~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~--v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDi  202 (458)
                      .|++|.|.| .|.+|..++..|.++|  ++|.  ...|+++..+.+.. +.  .+..+.     +.-..+..++++++|.
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g--~~v~v~~~~R~~~~~~~~~~-~~--~~~~~d-----~~~~~~~~~~~~~~d~   71 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGS--DKFVAKGLVRSAQGKEKIGG-EA--DVFIGD-----ITDADSINPAFQGIDA   71 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTT--TTCEEEEEESCHHHHHHTTC-CT--TEEECC-----TTSHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCC--CcEEEEEEcCCHHHHHhccC-Cc--EEEEee-----ecccccccccccccee
Confidence            478999999 5999999999999999  6644  45688876554432 11  111000     0001133456788999


Q ss_pred             EEEcCc
Q 012720          203 CLHAMP  208 (458)
Q Consensus       203 VilaVp  208 (458)
                      ||.+..
T Consensus        72 vi~~a~   77 (252)
T d2q46a1          72 LVILTS   77 (252)
T ss_dssp             EEECCC
T ss_pred             eEEEEe
Confidence            998764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.20  E-value=0.0087  Score=48.40  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++++|||+|.+|.=+|..|++.|  .+|+++.|++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG--~~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcC--CeEEEEEech
Confidence            468999999999999999999999  9999998763

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.17  E-value=0.012  Score=49.48  Aligned_cols=45  Identities=16%  Similarity=0.102  Sum_probs=39.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC  173 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~  173 (458)
                      ..+|.|+|+|.+|...+..+...|  .+|++.++++++.+.+++.|.
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~~Ga   72 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKELGA   72 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHTTC
T ss_pred             CCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhhcCc
Confidence            468999999999998888777777  899999999999988887764

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.15  E-value=0.0094  Score=51.70  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |||.|||+|..|.-+|..|.+.+.+.+|+++.|+.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999999999999999876447899998764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.11  E-value=0.011  Score=54.11  Aligned_cols=35  Identities=23%  Similarity=0.524  Sum_probs=31.8

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +++||.|+|+ |.+|..++..|.++|  |+|+++.|+.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCC
Confidence            4689999995 999999999999999  9999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.08  E-value=0.011  Score=47.45  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|+|||+|.+|+=+|..|++.|  .+|+++.+.+
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G--~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcC--CceEEEEeec
Confidence            478999999999999999999999  9999998665

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.019  Score=47.79  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      .++|.|||+|.+|..-+..|.++|  .+|++++..
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~G--A~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence            579999999999999999999999  899999653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.01  Score=48.07  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|+|||+|.+|.-+|..|++.|  .+|+++.|.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G--~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCC--cEEEEEeecc
Confidence            468999999999999999999999  9999999864

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.02  E-value=0.0086  Score=52.06  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCC-eEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQL-KVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~-~V~v~~r~~  162 (458)
                      .||+|||+|.-|...|..|+++|  + +|+++.+++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G--~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCC--CCcEEEEECCC
Confidence            37999999999999999999999  6 799999865

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.02  E-value=0.0075  Score=55.23  Aligned_cols=34  Identities=18%  Similarity=0.382  Sum_probs=31.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .+|+|||+|..|..+|..|+++|  ++|+++++.++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G--~~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence            37999999999999999999999  99999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.01  E-value=0.013  Score=47.26  Aligned_cols=34  Identities=32%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|+|||+|.+|.-+|..|++.|  .+|+++.+.+
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g--~~Vtlie~~~   63 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILD   63 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHhhccc--eEEEEEEecC
Confidence            468999999999999999999999  9999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.01  Score=53.74  Aligned_cols=34  Identities=29%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||+|||+|.-|..-|..|+++|  ++|+++..+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G--~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence            568999999999999999999999  9999998764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.97  E-value=0.011  Score=55.84  Aligned_cols=80  Identities=15%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             chhhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC---CCc----cCCCCCCCCceEEeCC
Q 012720          121 TDILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC---NCR----YFPEQKLPENVIATTD  192 (458)
Q Consensus       121 ~~~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~---~~~----~~~~~~l~~~i~a~~~  192 (458)
                      ..++.+.++|.|.|+ |-+|+.++..|.++|  ++|....|+....+.+.+...   ...    ...+.      .-..+
T Consensus         5 ~~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G--~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl------~~~~~   76 (342)
T d1y1pa1           5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDM------LKQGA   76 (342)
T ss_dssp             TCSSCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCT------TSTTT
T ss_pred             CCCCCCcCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCchhHHHHHHhhhccccccccEEEeccc------cchhh
Confidence            446666789999995 999999999999999  999999999876665543211   000    00111      00013


Q ss_pred             HHhhcCCCCEEEEcCc
Q 012720          193 AKTALLGADYCLHAMP  208 (458)
Q Consensus       193 ~~ea~~~aDiVilaVp  208 (458)
                      .++++.++|.|+.+.-
T Consensus        77 ~~~~~~~~~~v~~~a~   92 (342)
T d1y1pa1          77 YDEVIKGAAGVAHIAS   92 (342)
T ss_dssp             TTTTTTTCSEEEECCC
T ss_pred             hhhhcccchhhhhhcc
Confidence            4467788999887554

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.88  E-value=0.012  Score=49.21  Aligned_cols=36  Identities=28%  Similarity=0.448  Sum_probs=31.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||.|||+|..|..+|..|.+.+.+.+|+++++++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            469999999999999999999988556899998775

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.84  E-value=0.011  Score=53.09  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      +||+|||+|--|+++|..|+++|. ++|+++.+.++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi-~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGI-GKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CeEEEEeCCCC
Confidence            689999999999999999999982 38999998753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.011  Score=51.18  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=32.7

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |+..--|.|||+|.-|...|..|+++|  ++|+++.+++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G--~~V~vlE~~~   38 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQD   38 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCC
Confidence            444456999999999999999999999  9999999875

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.81  E-value=0.011  Score=48.74  Aligned_cols=102  Identities=16%  Similarity=0.185  Sum_probs=64.5

Q ss_pred             CCeEEEECc----------chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh
Q 012720          127 TNKVVVLGG----------GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA  196 (458)
Q Consensus       127 ~~kI~IIGa----------G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea  196 (458)
                      .+||+|+|+          ++-...++..|.+.|  .+|.+||..-...+ +  .+....+.....-..+....+++.++
T Consensus        13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g--~~V~~~DP~v~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~e~   87 (136)
T d1mv8a3          13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKG--YELRIFDRNVEYAR-V--HGANKEYIESKIPHVSSLLVSDLDEV   87 (136)
T ss_dssp             CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTT--CEEEEECHHHHHHT-T--SSSCHHHHHHTSHHHHTTBCSCHHHH
T ss_pred             CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhh--ccccccCCCCCHHH-H--hhhhhhhhhhccccccceeehhhhhh
Confidence            468999997          467888999999999  99999996322110 0  00000000000000011234588999


Q ss_pred             cCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          197 LLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       197 ~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +.++|+||++++.....++.    ..+.++.+|+++- |+-.
T Consensus        88 i~~~D~ivi~t~h~~f~~l~----~~~~~~~~I~D~~-~~~~  124 (136)
T d1mv8a3          88 VASSDVLVLGNGDELFVDLV----NKTPSGKKLVDLV-GFMP  124 (136)
T ss_dssp             HHHCSEEEECSCCGGGHHHH----HSCCTTCEEEESS-SCCS
T ss_pred             hhhceEEEEEeCCHHHHHHH----HHhcCCCEEEECC-CCCC
Confidence            99999999999987766543    3355678899987 4543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.80  E-value=0.015  Score=47.72  Aligned_cols=34  Identities=32%  Similarity=0.561  Sum_probs=31.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||.|||+|.+|.-+|..|++.|  .+|+++.+.+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g--~~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhC--cceeeeeecc
Confidence            579999999999999999999999  9999998765

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.77  E-value=0.06  Score=49.48  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +++.|-| +|.+|.++|..|+++|  ++|++.+|+.++.++..+
T Consensus        26 K~alITGas~GIG~aiA~~la~~G--a~Vii~~r~~~~l~~~~~   67 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLG--AQCVIASRKMDVLKATAE   67 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHH
Confidence            4455555 6999999999999999  999999999987665543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.076  Score=48.11  Aligned_cols=85  Identities=20%  Similarity=0.138  Sum_probs=56.4

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +.+.|.|+ +.+|.++|..|++.|  ++|.+++|++++++++.++-                     .+.-...+++.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G--~~Vv~~~r~~~~l~~~~~~l---------------------~~~~~~~~~~~~~   67 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQG--LKVVGCARTVGNIEELAAEC---------------------KSAGYPGTLIPYR   67 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---------------------HHTTCSSEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH---------------------HhcCCCceEEEEE
Confidence            56778885 899999999999999  99999999998877765531                     1111122333332


Q ss_pred             C---ccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 M---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 V---p~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +   ....++.+++.+......=.++|... |.
T Consensus        68 ~Dls~~~~v~~~v~~~~~~~g~iD~lVnnA-g~   99 (257)
T d1xg5a_          68 CDLSNEEDILSMFSAIRSQHSGVDICINNA-GL   99 (257)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCCCSEEEECC-CC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEecc-cc
Confidence            2   23557777777766555445677765 44

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.68  E-value=0.0072  Score=49.32  Aligned_cols=81  Identities=11%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEE-EEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc-CCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVY-MLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL-LGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~-v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~-~~aDiVi  204 (458)
                      .-+|.|+|+|.+|.+++..+.... ++++. ++|-++++.      |.   .+.+.    .+...+++++.. +..++++
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~-~~~iv~fiDdd~~k~------G~---~I~Gi----~V~~~~~l~~~~~~~i~iai   68 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKV------GR---PVRGG----VIEHVDLLPQRVPGRIEIAL   68 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTT------TC---EETTE----EEEEGGGHHHHSTTTCCEEE
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcC-CcEEEEEEeCchHhc------CC---EECCE----EEecHHHHHHHHhhcccEEE
Confidence            348999999999999998775432 37776 457666421      21   11111    122234444433 3578999


Q ss_pred             EcCccccHHHHHHhhhh
Q 012720          205 HAMPVQFSSSFLEGISD  221 (458)
Q Consensus       205 laVp~~~v~~vl~~i~~  221 (458)
                      +++|+...+++++.+.+
T Consensus        69 ~~i~~~~~~~I~d~l~~   85 (126)
T d2dt5a2          69 LTVPREAAQKAADLLVA   85 (126)
T ss_dssp             ECSCHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHH
Confidence            99998877777776544

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.65  E-value=0.011  Score=52.89  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=33.0

Q ss_pred             CCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      ..+||.|||+|.-|...|..|++.|  ++|+++++..+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G--~~v~l~E~~~~   83 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEK   83 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhc--cceeeEeeccc
Confidence            3579999999999999999999999  99999998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.63  E-value=0.091  Score=47.63  Aligned_cols=86  Identities=13%  Similarity=0.152  Sum_probs=57.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|-|+ +.+|.++|..|+++|  ++|.+.+|+++.+++..+.-                     .+...+..++.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~~~---------------------~~~~~~~~~~~~   60 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEG--AKLSLVDVSSEGLEASKAAV---------------------LETAPDAEVLTT   60 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---------------------HHHCTTCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH---------------------HhhCCCCeEEEE
Confidence            356677786 679999999999999  99999999998877665421                     111123334433


Q ss_pred             cC---ccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aV---p~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .+   ...+++.+++++...+.+=.++|+.. |+
T Consensus        61 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA-G~   93 (258)
T d1iy8a_          61 VADVSDEAQVEAYVTATTERFGRIDGFFNNA-GI   93 (258)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC-CC
T ss_pred             eccCCCHHHHHHHHHHHHHHhCCCCEEEECC-cc
Confidence            22   23567777777766555545777765 54

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0091  Score=53.36  Aligned_cols=80  Identities=19%  Similarity=0.228  Sum_probs=49.1

Q ss_pred             hhhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          122 DILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       122 ~~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      +..|..+||.|.|+ |.+|..+...|.+.|.-++|++++|++.............. ..+      +.-.++..++++++
T Consensus         9 ~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~-~~D------~~~~~~~~~~~~~~   81 (232)
T d2bkaa1           9 DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQE-VVD------FEKLDDYASAFQGH   81 (232)
T ss_dssp             HHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEE-ECC------GGGGGGGGGGGSSC
T ss_pred             HhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeee-eec------cccccccccccccc
Confidence            33445679999995 99999999999998833489999997532111000000000 000      00012445667899


Q ss_pred             CEEEEcCc
Q 012720          201 DYCLHAMP  208 (458)
Q Consensus       201 DiVilaVp  208 (458)
                      |++|.|+-
T Consensus        82 d~vi~~~~   89 (232)
T d2bkaa1          82 DVGFCCLG   89 (232)
T ss_dssp             SEEEECCC
T ss_pred             cccccccc
Confidence            99999875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.61  E-value=0.029  Score=47.58  Aligned_cols=92  Identities=12%  Similarity=0.047  Sum_probs=58.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCC-HHhh-----cCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTD-AKTA-----LLGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~-~~ea-----~~~a  200 (458)
                      ..+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|.......          .++ .++.     -..+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~ga~~~i~~----------~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLGADHVVDA----------RRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTTCSEEEET----------TSCHHHHHHHHTTTCCE
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcccceeecC----------cccHHHHHHHhhCCCCc
Confidence            4689999999999988888877772 577888999998888887664311100          011 1111     1358


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |+||-|+.....   ++.....++++-.++.+
T Consensus       102 d~vid~~g~~~~---~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         102 NVAMDFVGSQAT---VDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EEEEESSCCHHH---HHHGGGGEEEEEEEEEC
T ss_pred             eEEEEecCcchH---HHHHHHHHhCCCEEEEE
Confidence            999999986542   23334444555555544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.59  E-value=0.015  Score=46.23  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+|+.|||+|..|.-+|..|++.|  ++|+++.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g--~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcc--cceEEEeeec
Confidence            468999999999999999999999  9999998864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.01  Score=55.31  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |.+|.|||+|.-|+.+|..|++.|  ++|+++.++.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g--~~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCC--CcEEEEECCC
Confidence            457999999999999999999999  9999999876

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.06  Score=48.65  Aligned_cols=87  Identities=13%  Similarity=0.043  Sum_probs=55.6

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +.+.|-|+ +.+|.++|..|++.|  .+|.+.+|+.+..++..+.-..                     ......+..+.
T Consensus         4 KvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~---------------------~~~~~~~~~~~   60 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKG--AKVALVDWNLEAGVQCKAALHE---------------------QFEPQKTLFIQ   60 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHTT---------------------TSCGGGEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH---------------------hcCCCcEEEEE
Confidence            45566675 779999999999999  9999999999887766543110                     01111222222


Q ss_pred             C---ccccHHHHHHhhhhcCCCCCeEEEeccCCCc
Q 012720          207 M---PVQFSSSFLEGISDYVDPGLPFISLSKGLEL  238 (458)
Q Consensus       207 V---p~~~v~~vl~~i~~~l~~~~ivV~~snGi~~  238 (458)
                      +   ....++++++.+...+.+=.++|+.. |+..
T Consensus        61 ~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA-g~~~   94 (254)
T d2gdza1          61 CDVADQQQLRDTFRKVVDHFGRLDILVNNA-GVNN   94 (254)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCCEEEECC-CCCC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCcCeecccc-cccc
Confidence            2   23457777777766555445777766 5543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.44  E-value=0.0099  Score=52.48  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-----CCeEEEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-----QLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-----~~~V~v~~r~~~  163 (458)
                      .+||+|||+|.-|.+.|..|+++|+     +++|++|++.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            3589999999999999999999881     248999998763

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.054  Score=49.44  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=35.8

Q ss_pred             CCeEEEE--CcchHHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVL--GGGSFGTAMAAHVANK-KSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~II--GaG~mG~~iA~~La~a-G~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .|+|+||  |.+.+|.++|..|++. |  ..|++.+|+.++.++..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g--~~Vi~~~r~~~~~~~~~~   46 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAVQ   46 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH
Confidence            4789888  6799999999999986 7  899999999988776554

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.35  E-value=0.015  Score=53.45  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=29.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+|.|||+|.+|.+.|..|+++|. ++|++++++.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            379999999999999999999982 3799999864

>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: GDP-mannose 6-dehydrogenase, middle domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.31  E-value=0.013  Score=45.71  Aligned_cols=85  Identities=22%  Similarity=0.222  Sum_probs=55.7

Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccc-hHHHHhhC-CCChHHHHhhccccchh
Q 012720          333 NLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNR-TVGVRLGS-GEKLDDILSSMNQVAEG  410 (458)
Q Consensus       333 kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~-~~g~~l~~-g~~~e~~~~~~~~~~eg  410 (458)
                      |+..|...++-...++|+..+|++.|+|...+.+..+...-+     ..+..+ .+|.  +- |.++             
T Consensus         8 K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri-----~~~~~~~~pG~--G~GG~Cl-------------   67 (98)
T d1mv8a1           8 KYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKL-----NLSRYYMRPGF--AFGGSCL-------------   67 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTT-----TTSSTTCSCCS--CCCSSSH-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccc-----cccccccCCcc--cCCcccc-------------
Confidence            344456667777899999999999999977776532211111     001111 1221  22 3343             


Q ss_pred             hhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          411 VSTAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       411 ~kd~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      .||..++..+++++|++.++++.+.+.
T Consensus        68 pKD~~al~~~a~~~~~~~~ll~~~~~~   94 (98)
T d1mv8a1          68 PKDVRALTYRASQLDVEHPMLGSLMRS   94 (98)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTGGGHHHH
T ss_pred             chhHHHHHHHHHHcCCChHHHHHHHHH
Confidence            388999999999999999999887664

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.29  E-value=0.034  Score=47.57  Aligned_cols=81  Identities=14%  Similarity=0.103  Sum_probs=52.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-hcCCCCEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-ALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-a~~~aDiVil  205 (458)
                      ..+|.|+|+|.+|...+..+...|. ..|++.++++++.+..++.|....+... ..+..+..  -..+ --.++|++|-
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~-~~~~~~~~--~~~~~~~~G~d~vie  104 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGATDCLNPR-ELDKPVQD--VITELTAGGVDYSLD  104 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSEEECGG-GCSSCHHH--HHHHHHTSCBSEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCCcccCCc-cchhhhhh--hHhhhhcCCCcEEEE
Confidence            4689999999999998888888882 3688899999988877777653221100 00000000  0001 1257899999


Q ss_pred             cCcccc
Q 012720          206 AMPVQF  211 (458)
Q Consensus       206 aVp~~~  211 (458)
                      |+....
T Consensus       105 ~~G~~~  110 (174)
T d1e3ia2         105 CAGTAQ  110 (174)
T ss_dssp             SSCCHH
T ss_pred             ecccch
Confidence            998654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.23  E-value=0.061  Score=46.75  Aligned_cols=100  Identities=14%  Similarity=0.049  Sum_probs=60.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh--cCCCCEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA--LLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea--~~~aDiVi  204 (458)
                      ..+|.|+|+|.+|...+..+...|. ..|++.++++++++..++.|....+.+..   .  .......+.  -.++|++|
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~---~--~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQGFEIADLSLD---T--PLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTCEEEETTSS---S--CHHHHHHHHHSSSCEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhccccEEEeCCC---c--CHHHHHHHHhCCCCcEEEE
Confidence            4689999999999877766666662 47889999999998888876432111100   0  000011121  13689999


Q ss_pred             EcCccc------------cHHHHHHhhhhcCCCCCeEEEe
Q 012720          205 HAMPVQ------------FSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       205 laVp~~------------~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      -|+..+            ...+.++.....++++..|+.+
T Consensus       100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2         100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            998632            1234455555555555555433

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.21  E-value=0.07  Score=48.46  Aligned_cols=85  Identities=12%  Similarity=0.051  Sum_probs=53.6

Q ss_pred             eEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       129 kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      .+.|-| ++.+|.++|..|++.|  ++|.+.+|+++.++++.++-..                    .-....++..+.+
T Consensus         7 valVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~l~~--------------------~~~~~~~~~~~~~   64 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREG--AKVTITGRHAERLEETRQQILA--------------------AGVSEQNVNSVVA   64 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH--------------------TTCCGGGEEEEEC
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh--------------------cCCCcCceEEEEc
Confidence            344446 5899999999999999  9999999999887766543100                    0001112333322


Q ss_pred             ---ccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          208 ---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       208 ---p~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                         ...+++.+++.+.....+=.++|+.. |+
T Consensus        65 Dvt~~~~v~~~~~~~~~~~g~iDilvnnA-G~   95 (264)
T d1spxa_          65 DVTTDAGQDEILSTTLGKFGKLDILVNNA-GA   95 (264)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEEECC-C-
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCEeeccc-cc
Confidence               23457777777766555555777766 44

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.20  E-value=0.016  Score=46.70  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+++.|||+|.+|.=+|..|++.|  .+|+++.|.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G--~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcC--CeEEEEEEcc
Confidence            468999999999999999999999  9999998865

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.20  E-value=0.056  Score=46.02  Aligned_cols=77  Identities=12%  Similarity=0.046  Sum_probs=52.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-----cCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-----~~~aD  201 (458)
                      ..+|.|+|+|.+|......+...|. ..|++.|+++++.+..++.|.+..+... ..+      ...++.     -...|
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa~~~i~~~-~~d------~~~~~~~~~~~~~G~d   99 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGATECLNPK-DYD------KPIYEVICEKTNGGVD   99 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTCSEEECGG-GCS------SCHHHHHHHHTTSCBS
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCCcEEEcCC-Cch------hHHHHHHHHhcCCCCc
Confidence            4689999999999999988888882 4788999999998888887754221000 000      001121     14689


Q ss_pred             EEEEcCcccc
Q 012720          202 YCLHAMPVQF  211 (458)
Q Consensus       202 iVilaVp~~~  211 (458)
                      ++|.++-...
T Consensus       100 ~vid~~g~~~  109 (174)
T d1p0fa2         100 YAVECAGRIE  109 (174)
T ss_dssp             EEEECSCCHH
T ss_pred             EEEEcCCCch
Confidence            9999988643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.17  E-value=0.046  Score=46.32  Aligned_cols=78  Identities=12%  Similarity=0.093  Sum_probs=53.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-----cCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-----~~~aD  201 (458)
                      ..+|.|+|+|.+|...+..++..| ...|++.++++++.+..++.|....... ...+      +...+.     -.++|
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~-~~~~------~~~~~~~~~~~~~G~D  100 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEVGATECVNP-QDYK------KPIQEVLTEMSNGGVD  100 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEEECG-GGCS------SCHHHHHHHHTTSCBS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHhCCeeEEec-CCch------hHHHHHHHHHhcCCCC
Confidence            468999999999999999998887 3688999999999888887764321100 0000      011111     14689


Q ss_pred             EEEEcCccccH
Q 012720          202 YCLHAMPVQFS  212 (458)
Q Consensus       202 iVilaVp~~~v  212 (458)
                      ++|.++.....
T Consensus       101 ~vid~~G~~~~  111 (176)
T d2jhfa2         101 FSFEVIGRLDT  111 (176)
T ss_dssp             EEEECSCCHHH
T ss_pred             EEEecCCchhH
Confidence            99999986543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.00  E-value=0.054  Score=45.71  Aligned_cols=78  Identities=13%  Similarity=0.103  Sum_probs=53.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh-----cCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA-----LLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea-----~~~aD  201 (458)
                      ..+|.|+|+|.+|...+..++..| ...|+..++++++.+..++.|....+..... .      ...++.     -.++|
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~-~------~~~~~~~~~~~~~G~d  100 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVFGATDFVNPNDH-S------EPISQVLSKMTNGGVD  100 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCCEEECGGGC-S------SCHHHHHHHHHTSCBS
T ss_pred             CCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHHcCCcEEEcCCCc-c------hhHHHHHHhhccCCcc
Confidence            468999999999999998888877 3679999999999988888775322110000 0      011111     14689


Q ss_pred             EEEEcCccccH
Q 012720          202 YCLHAMPVQFS  212 (458)
Q Consensus       202 iVilaVp~~~v  212 (458)
                      ++|.++-....
T Consensus       101 ~vid~~G~~~~  111 (175)
T d1cdoa2         101 FSLECVGNVGV  111 (175)
T ss_dssp             EEEECSCCHHH
T ss_pred             eeeeecCCHHH
Confidence            99999986544

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.99  E-value=0.098  Score=47.37  Aligned_cols=84  Identities=12%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++.+.+.                     +.+  .+.++..+
T Consensus         5 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~---------------------~~~--~g~~~~~~   59 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEG--TAIALLDMNREALEKAEAS---------------------VRE--KGVEARSY   59 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHT--TTSCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHh--cCCcEEEE
Confidence            456777786 679999999999999  9999999999887766542                     111  12233322


Q ss_pred             cC---ccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aV---p~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .+   ...+++++++.+......=.++|+.. |+
T Consensus        60 ~~Dv~~~~~v~~~~~~~~~~~g~iDilVnna-G~   92 (260)
T d1zema1          60 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA-GY   92 (260)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC-CC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCeehhhh-cc
Confidence            22   23557777777766555445677654 44

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.97  E-value=0.11  Score=46.93  Aligned_cols=85  Identities=12%  Similarity=0.151  Sum_probs=56.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.++-                     .+  ....+..+
T Consensus         8 GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~---------------------~~--~g~~~~~~   62 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLG--ASVYTCSRNQKELNDCLTQW---------------------RS--KGFKVEAS   62 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH---------------------HH--TTCEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH---------------------Hh--cCCCceEE
Confidence            467778886 679999999999999  99999999998877665431                     11  11122222


Q ss_pred             cC---ccccHHHHHHhhhhcCC-CCCeEEEeccCCC
Q 012720          206 AM---PVQFSSSFLEGISDYVD-PGLPFISLSKGLE  237 (458)
Q Consensus       206 aV---p~~~v~~vl~~i~~~l~-~~~ivV~~snGi~  237 (458)
                      .+   ....++++++++...+. +=.++|+.. |+.
T Consensus        63 ~~Dv~~~~~v~~~~~~~~~~~~~~idilvnnA-G~~   97 (259)
T d2ae2a_          63 VCDLSSRSERQELMNTVANHFHGKLNILVNNA-GIV   97 (259)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTTTCCCEEEECC-CCC
T ss_pred             EeeCCCHHHHHHHHHHHHHHhCCCceEEEECC-cee
Confidence            21   23457777777766554 345677765 544

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.96  E-value=0.026  Score=44.94  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|+|||+|.+|.=+|..|++.|  .+|+++.|.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g--~~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcc--hhheEeeccc
Confidence            478999999999999999999999  9999998865

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.94  E-value=0.049  Score=46.52  Aligned_cols=78  Identities=10%  Similarity=0.062  Sum_probs=54.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-----hcCCCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-----ALLGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-----a~~~aD  201 (458)
                      ...|.|+|+|.+|......+...|. ..|++.|+++++.+..++.|.+..+... +.      ....++     .-.++|
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~~in~~-~~------~~~~~~~~~~~~g~G~d  101 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATECISPK-DS------TKPISEVLSEMTGNNVG  101 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSEEECGG-GC------SSCHHHHHHHHHTSCCC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcEEECcc-cc------chHHHHHHHHhccccce
Confidence            4579999999999999999988872 4799999999999888887754221100 00      001111     124799


Q ss_pred             EEEEcCccccH
Q 012720          202 YCLHAMPVQFS  212 (458)
Q Consensus       202 iVilaVp~~~v  212 (458)
                      ++|.++.....
T Consensus       102 ~vi~~~g~~~~  112 (176)
T d1d1ta2         102 YTFEVIGHLET  112 (176)
T ss_dssp             EEEECSCCHHH
T ss_pred             EEEEeCCchHH
Confidence            99999986543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.91  E-value=0.12  Score=46.45  Aligned_cols=86  Identities=15%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+.++.++..++                     +.+. .+.+++.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~---------------------l~~~-~g~~~~~~   60 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAG--CSVVVASRNLEEASEAAQK---------------------LTEK-YGVETMAF   60 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH---------------------HHHH-HCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHHH-hCCcEEEE
Confidence            467888886 779999999999999  9999999998876655432                     1110 12233333


Q ss_pred             cCc---cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMP---VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp---~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+-   ..+++.+++++...+.+=.++|+.. |+.
T Consensus        61 ~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA-G~~   94 (251)
T d1vl8a_          61 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAA-GIN   94 (251)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC-CCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC-CCC
Confidence            222   3557777777766555445777765 554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.12  Score=46.94  Aligned_cols=43  Identities=28%  Similarity=0.374  Sum_probs=37.7

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +.+++.|.|+ +.+|.++|..|++.|  ++|++.+|+++.++.+.+
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G--~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMG--AHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            3578999996 669999999999999  999999999998887765

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.91  E-value=0.069  Score=45.25  Aligned_cols=91  Identities=16%  Similarity=0.216  Sum_probs=60.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------CC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------LG  199 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------~~  199 (458)
                      ..+|.|.|+ |.+|......+...|  .+|.+..+++++.+.+++.|....+..  +       ..+..+.+      ++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~~Ga~~vi~~--~-------~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSRLGVEYVGDS--R-------SVDFADEILELTDGYG   94 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHTTCCSEEEET--T-------CSTHHHHHHHHTTTCC
T ss_pred             CCEEEEECCCCCcccccchhhcccc--ccceeeecccccccccccccccccccC--C-------ccCHHHHHHHHhCCCC
Confidence            468999895 999999888888778  899999999988888887664321100  0       01222222      46


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +|+||-|+........++-    ++++..+|.+
T Consensus        95 ~d~v~d~~g~~~~~~~~~~----l~~~G~~v~~  123 (183)
T d1pqwa_          95 VDVVLNSLAGEAIQRGVQI----LAPGGRFIEL  123 (183)
T ss_dssp             EEEEEECCCTHHHHHHHHT----EEEEEEEEEC
T ss_pred             EEEEEecccchHHHHHHHH----hcCCCEEEEE
Confidence            8999999986555554443    3344556655

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.88  E-value=0.081  Score=47.86  Aligned_cols=36  Identities=14%  Similarity=0.193  Sum_probs=31.5

Q ss_pred             CCCeEEEECc-c--hHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          126 RTNKVVVLGG-G--SFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       126 ~~~kI~IIGa-G--~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      +.+++.|.|+ |  .+|.++|..|++.|  ++|++.+|+++
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~G--a~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQG--ATLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence            4578999996 5  59999999999999  99999999864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.84  E-value=0.052  Score=45.66  Aligned_cols=93  Identities=11%  Similarity=0.118  Sum_probs=59.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh------cCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA------LLG  199 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea------~~~  199 (458)
                      ..+|.|+|+ |.+|...+..+...|. ..|+++++++++.+.+++.|........         ..+..+.      -..
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~Ga~~~i~~~---------~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAGADYVINAS---------MQDPLAEIRRITESKG   97 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHTTTSC
T ss_pred             CCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcCCceeeccC---------CcCHHHHHHHHhhccc
Confidence            468999995 9999998888887772 5899999999998888877643111000         0122111      135


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +|++|-|+.....   ++.....++++..++.+
T Consensus        98 ~d~vid~~g~~~~---~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          98 VDAVIDLNNSEKT---LSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             EEEEEESCCCHHH---HTTGGGGEEEEEEEEEC
T ss_pred             chhhhcccccchH---HHhhhhhcccCCEEEEe
Confidence            7999999875432   23334445555555544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.77  E-value=0.16  Score=46.07  Aligned_cols=84  Identities=11%  Similarity=0.046  Sum_probs=53.9

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|.| ++.+|.++|..|++.|  ++|.+.+|+++.++++.++-..         +..+..        -.+|+   
T Consensus         6 gKvalITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~---------~~~~~~--------~~~Dv---   63 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYG--AKVVIADIADDHGQKVCNNIGS---------PDVISF--------VHCDV---   63 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHCC---------TTTEEE--------EECCT---
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhcC---------CCceEE--------EEccC---
Confidence            34566667 4789999999999999  9999999999888777653110         000100        01121   


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                       ....+++.+++++.....+=.++|...
T Consensus        64 -~~~~~v~~~~~~~~~~~g~iD~lVnnA   90 (268)
T d2bgka1          64 -TKDEDVRNLVDTTIAKHGKLDIMFGNV   90 (268)
T ss_dssp             -TCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             -CCHHHHHHHHHHHHHHcCCcceecccc
Confidence             123567777777766555445677665

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.73  E-value=0.024  Score=51.35  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.7

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      -|.|||+|.+|+..|..|+++|  ++|+++++..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G--~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            4899999999999999999999  9999999853

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.11  Score=47.01  Aligned_cols=85  Identities=12%  Similarity=0.087  Sum_probs=55.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.++                     +.+  .+.+++.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~---------------------l~~--~g~~~~~~   65 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDE---------------------IQQ--LGGQAFAC   65 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCHHHHHHHHHH---------------------HHH--TTCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHH---------------------HHH--cCCcEEEE
Confidence            355666674 789999999999999  9999999999887766542                     111  11223322


Q ss_pred             cC---ccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aV---p~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+   ...+++.+++.+...+.+=.++|... |+.
T Consensus        66 ~~Dvs~~~~~~~~~~~~~~~~g~iDilvnnA-G~~   99 (255)
T d1fmca_          66 RCDITSEQELSALADFAISKLGKVDILVNNA-GGG   99 (255)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC-CCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEeeeCC-cCC
Confidence            22   13456777777766555445777765 543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.12  Score=43.55  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=58.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh------cCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA------LLG  199 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea------~~~  199 (458)
                      ..+|.|+|+ |.+|......+...|  .+|++.++++++.+.+++.|....+...         ..+..+.      -+.
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~~Ga~~vi~~~---------~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQNGAHEVFNHR---------EVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETT---------STTHHHHHHHHHCTTC
T ss_pred             CCEEEEEeccccccccccccccccC--cccccccccccccccccccCcccccccc---------cccHHHHhhhhhccCC
Confidence            468999996 999998777777777  8999999999888888876643211000         0122221      135


Q ss_pred             CCEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          200 ADYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      .|+||-|+....++..+    ..++++-.++.+
T Consensus        98 ~d~v~d~~g~~~~~~~~----~~l~~~G~iv~~  126 (174)
T d1yb5a2          98 IDIIIEMLANVNLSKDL----SLLSHGGRVIVV  126 (174)
T ss_dssp             EEEEEESCHHHHHHHHH----HHEEEEEEEEEC
T ss_pred             ceEEeecccHHHHHHHH----hccCCCCEEEEE
Confidence            78888888754444433    334444455555

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.68  E-value=0.021  Score=51.42  Aligned_cols=44  Identities=18%  Similarity=0.283  Sum_probs=35.8

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      |.....|.|||+|.-|...|..|+++|  ++|.++++.+..-..+.
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G--~~V~vlEk~~~~G~k~~   44 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKIL   44 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHH
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCceE
Confidence            334457999999999999999999999  99999999875433443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.022  Score=42.39  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +++|+|||.|-.|.-|+..-.+-|  ++|.+++.++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG--~~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLG--IAVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGT--EEEEEECTTS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcC--CEEEEEcCCC
Confidence            468999999999999999888888  9999999865

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.63  E-value=0.12  Score=46.66  Aligned_cols=83  Identities=20%  Similarity=0.221  Sum_probs=54.9

Q ss_pred             eEE-EECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          129 KVV-VLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       129 kI~-IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      ||+ |.|+ +.+|.++|..|+++|  ++|.+++|+++.++.+.++-                     .+  .+.++..+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~G--a~V~~~~r~~~~l~~~~~~l---------------------~~--~g~~~~~~~   65 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSV--SHVICISRTQKSCDSVVDEI---------------------KS--FGYESSGYA   65 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTS--SEEEEEESSHHHHHHHHHHH---------------------HT--TTCCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHH---------------------Hh--cCCcEEEEE
Confidence            455 5586 789999999999999  99999999998877765431                     11  011222222


Q ss_pred             C---ccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 M---PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 V---p~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +   ...++..+++++.....+=.++|... |+.
T Consensus        66 ~Dvt~~~~v~~~~~~~~~~~g~iDilvnna-g~~   98 (251)
T d2c07a1          66 GDVSKKEEISEVINKILTEHKNVDILVNNA-GIT   98 (251)
T ss_dssp             CCTTCHHHHHHHHHHHHHHCSCCCEEEECC-CCC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCceeeeecc-ccc
Confidence            2   23567778887766665545777655 443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.53  E-value=0.026  Score=50.84  Aligned_cols=35  Identities=17%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++||.|+|+ |.+|..++..|.++|  ++|++++|+.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G--~~V~~l~R~~   37 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRES   37 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEECCC
Confidence            4689999996 999999999999999  9999999875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.52  E-value=0.12  Score=46.75  Aligned_cols=87  Identities=10%  Similarity=0.121  Sum_probs=54.1

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEE
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYC  203 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~-~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiV  203 (458)
                      +.+.+.|-|+ +.||.++|..|++.|  ++|.+.+|+ .+.++.+.+.                     ..+ ..+.+++
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~---------------------~~~-~~g~~~~   58 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQG--ADIVLNGFGDAAEIEKVRAG---------------------LAA-QHGVKVL   58 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTT--CEEEEECCSCHHHHHHHHHH---------------------HHH-HHTSCEE
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHH---------------------HHH-hcCCcEE
Confidence            3445555564 779999999999999  999999986 4555554432                     001 0123344


Q ss_pred             EEcCc---cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          204 LHAMP---VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       204 ilaVp---~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+.+-   ..+++++++++.....+=.++|+.. |+.
T Consensus        59 ~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA-G~~   94 (260)
T d1x1ta1          59 YDGADLSKGEAVRGLVDNAVRQMGRIDILVNNA-GIQ   94 (260)
T ss_dssp             EECCCTTSHHHHHHHHHHHHHHHSCCSEEEECC-CCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHhCCCcEEEeec-ccc
Confidence            33322   3457777777766555545777766 554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.48  E-value=0.13  Score=43.13  Aligned_cols=94  Identities=13%  Similarity=0.092  Sum_probs=57.4

Q ss_pred             ccchhhcc-ccchhhcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE
Q 012720          111 WSRTWRSK-AKTDILERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA  189 (458)
Q Consensus       111 ~~~~~~~~-~~~~~~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a  189 (458)
                      +.+.|+.. +..++ ....+|.|+|+|.+|......+...|. ..|++.++++++.+..++.|....+... .      .
T Consensus        13 ~~Tay~al~~~~~~-~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~~~i~~~-~------~   83 (176)
T d2fzwa2          13 ISTGYGAAVNTAKL-EPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGATECINPQ-D------F   83 (176)
T ss_dssp             HHHHHHHHHTTTCC-CTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCSEEECGG-G------C
T ss_pred             HHHHHHHHHHhhCC-CCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCcEEEeCC-c------h
Confidence            34566643 22222 224689999999999988888887872 4677788988888877777643211000 0      0


Q ss_pred             eCCHHhh-----cCCCCEEEEcCccccHH
Q 012720          190 TTDAKTA-----LLGADYCLHAMPVQFSS  213 (458)
Q Consensus       190 ~~~~~ea-----~~~aDiVilaVp~~~v~  213 (458)
                      .++..+.     -..+|+||-++......
T Consensus        84 ~~~~~~~~~~~~~~g~D~vid~~G~~~~~  112 (176)
T d2fzwa2          84 SKPIQEVLIEMTDGGVDYSFECIGNVKVM  112 (176)
T ss_dssp             SSCHHHHHHHHTTSCBSEEEECSCCHHHH
T ss_pred             hhHHHHHHHHHcCCCCcEeeecCCCHHHH
Confidence            0112111     14689999999865543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.46  E-value=0.033  Score=45.03  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+++.|||+|.+|.=+|..|++.|  .+|+++.+.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G--~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCC--CEEEEEEeec
Confidence            468999999999999999999999  9999998765

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.39  E-value=0.19  Score=45.15  Aligned_cols=84  Identities=13%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++.+.+.-.                        ...++..+
T Consensus         6 gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~~------------------------~~~~~~~~   59 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEG--AKVMITGRHSDVGEKAAKSVG------------------------TPDQIQFF   59 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC------------------------CTTTEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhC------------------------CCCcEEEE
Confidence            356667784 789999999999999  999999999988877665310                        01122222


Q ss_pred             cC---ccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aV---p~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .+   ...+++++++.+...+.+=.++|+.. |+.
T Consensus        60 ~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA-g~~   93 (251)
T d1zk4a1          60 QHDSSDEDGWTKLFDATEKAFGPVSTLVNNA-GIA   93 (251)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC-CCC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCceEEEecc-ccc
Confidence            22   13457777777766555445777765 554

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.32  E-value=0.13  Score=45.98  Aligned_cols=84  Identities=14%  Similarity=0.119  Sum_probs=54.8

Q ss_pred             CeEE-EECc-chHHHHHHHHHHhcCCCCe-------EEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          128 NKVV-VLGG-GSFGTAMAAHVANKKSQLK-------VYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       128 ~kI~-IIGa-G~mG~~iA~~La~aG~~~~-------V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      |+|. |-|+ +.+|.++|..|+++|  ++       |.+++|+++.++++.++-                     .+  .
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G--~~~~~~~~~v~~~~r~~~~l~~~~~~~---------------------~~--~   55 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAA--RHHPDFEPVLVLSSRTAADLEKISLEC---------------------RA--E   55 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHT--TTCTTCCEEEEEEESCHHHHHHHHHHH---------------------HT--T
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhC--ccccccCcEEEEEeCCHHHHHHHHHHH---------------------Hh--c
Confidence            3554 5585 779999999999999  65       889999998877765421                     11  1


Q ss_pred             CCCEEEEcC--c-cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          199 GADYCLHAM--P-VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       199 ~aDiVilaV--p-~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +.++..+.+  . ..+++.+++.+.....+=.++|+.. |+.
T Consensus        56 g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnA-g~~   96 (240)
T d2bd0a1          56 GALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNA-GVG   96 (240)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECC-CCC
T ss_pred             CCcEEEEEecCCCHHHHHHHHHHHHHHcCCcceeeccc-ccc
Confidence            122222222  2 2457777877777666555777665 554

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.27  E-value=0.12  Score=46.96  Aligned_cols=87  Identities=9%  Similarity=0.057  Sum_probs=56.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|.|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.+.-...                    -....++..+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~G--a~V~l~~r~~~~l~~~~~~l~~~--------------------~~~~~~~~~~   62 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEG--ANVTITGRSSERLEETRQIILKS--------------------GVSEKQVNSV   62 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTT--------------------TCCGGGEEEE
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc--------------------CCCCCceEEE
Confidence            456777785 789999999999999  99999999998877765531100                    0011123322


Q ss_pred             cC---ccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AM---PVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aV---p~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .+   ...+++.+++.+.....+=.++|+.. |+
T Consensus        63 ~~Dvs~~~~v~~~~~~~~~~~g~iDilvnnA-G~   95 (272)
T d1xkqa_          63 VADVTTEDGQDQIINSTLKQFGKIDVLVNNA-GA   95 (272)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC-CC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCceEEEeCC-cc
Confidence            22   23457777777766555445777765 44

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.069  Score=48.02  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=38.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK  171 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~  171 (458)
                      .+++.|.|+ +.+|.++|..|++.|  ++|.+.+|+++.++.+.++
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~   50 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATG--ARVVAVSRTQADLDSLVRE   50 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHh
Confidence            468888895 789999999999999  9999999999988887765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.17  Score=45.45  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=56.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++.+.++..+            +..        -.+|+   
T Consensus         6 GK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~~~~------------~~~--------~~~Dv---   60 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSG--ARVVICDKDESGGRALEQELPG------------AVF--------ILCDV---   60 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCTT------------EEE--------EECCT---
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhcCC------------CeE--------EEccC---
Confidence            467888885 899999999999999  9999999999988887764311            100        01121   


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                       ....+++.+++++.....+=.++|+.. |+
T Consensus        61 -s~~~~v~~~~~~~~~~~g~iDilVnnA-G~   89 (250)
T d1ydea1          61 -TQEDDVKTLVSETIRRFGRLDCVVNNA-GH   89 (250)
T ss_dssp             -TSHHHHHHHHHHHHHHHSCCCEEEECC-CC
T ss_pred             -CCHHHHHHHHHHHHHhcCCCCEEEecc-cc
Confidence             123567777777766555445677765 43

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.23  Score=45.78  Aligned_cols=87  Identities=11%  Similarity=0.050  Sum_probs=57.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|.|+ +.+|.++|..|+++|  ++|.+.+|+.++++...++-..                 ...+ ..+.+++.+
T Consensus        12 gKvalITGas~GIG~aia~~la~~G--a~Vvi~~r~~~~l~~~~~el~~-----------------~~~~-~~~~~~~~~   71 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELG--SNVVIASRKLERLKSAADELQA-----------------NLPP-TKQARVIPI   71 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-----------------TSCT-TCCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh-----------------hhcc-ccCceEEEE
Confidence            467788885 779999999999999  9999999999877665442100                 0000 123445444


Q ss_pred             cCc---cccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMP---VQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp---~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .+-   ..+++++++.+.....+=.++|+..
T Consensus        72 ~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnA  102 (297)
T d1yxma1          72 QCNIRNEEEVNNLVKSTLDTFGKINFLVNNG  102 (297)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eccCCCHHHHHHHHHHHHHHhCCeEEEEeec
Confidence            332   3457777777766555556777765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.20  E-value=0.044  Score=51.64  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=32.6

Q ss_pred             hcCCCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          124 LERTNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       124 ~~~~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |...|||.|.| .|-+|+.++..|.+.|  |+|+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g--~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEG--HYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCC
Confidence            44579999999 5999999999999999  9999998754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.18  E-value=0.16  Score=45.51  Aligned_cols=85  Identities=9%  Similarity=0.020  Sum_probs=56.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|++++++.+.++-.           ..+...        .+|+   
T Consensus         6 gK~alITGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~--------~~Dv---   61 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEG--AKVVFGDILDEEGKAMAAELA-----------DAARYV--------HLDV---   61 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTG-----------GGEEEE--------ECCT---
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhh-----------CcceEE--------Eeec---
Confidence            345666686 779999999999999  999999999988877765310           001100        1111   


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                       ....+++++++++.....+=.++|+.. |+.
T Consensus        62 -~~~~~v~~~~~~~~~~~g~idilinnA-G~~   91 (244)
T d1nffa_          62 -TQPAQWKAAVDTAVTAFGGLHVLVNNA-GIL   91 (244)
T ss_dssp             -TCHHHHHHHHHHHHHHHSCCCEEEECC-CCC
T ss_pred             -CCHHHHHHHHHHHHHHhCCCeEEEECC-ccc
Confidence             123567777877766555555777766 554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.11  E-value=0.14  Score=46.38  Aligned_cols=42  Identities=19%  Similarity=0.204  Sum_probs=36.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|-|+ +.+|.++|..|+++|  ++|.+.+|+++.++++.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~G--a~V~~~~r~~~~l~~~~~   50 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFG--AVIHTCARNEYELNECLS   50 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467888885 779999999999999  999999999988776654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.037  Score=50.78  Aligned_cols=31  Identities=39%  Similarity=0.499  Sum_probs=29.4

Q ss_pred             EEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          130 VVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       130 I~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |+|||+|.-|...|..|+++|  ++|+++.+..
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G--~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSG--LNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCC--CCEEEEecCC
Confidence            899999999999999999999  9999999865

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.17  Score=42.54  Aligned_cols=83  Identities=10%  Similarity=-0.019  Sum_probs=55.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhc------CC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTAL------LG  199 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~------~~  199 (458)
                      ..+|.|+|+ |.+|..........|  .+|++.++++++.+.+++.|.+..+...         ..|..+.+      ..
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~lGa~~vi~~~---------~~d~~~~v~~~t~g~g   97 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKAGAWQVINYR---------EEDLVERLKEITGGKK   97 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHHTCSEEEETT---------TSCHHHHHHHHTTTCC
T ss_pred             CCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhcCCeEEEECC---------CCCHHHHHHHHhCCCC
Confidence            468999965 568888777777777  8999999999999988887753211000         01222211      35


Q ss_pred             CCEEEEcCccccHHHHHHhhh
Q 012720          200 ADYCLHAMPVQFSSSFLEGIS  220 (458)
Q Consensus       200 aDiVilaVp~~~v~~vl~~i~  220 (458)
                      .|+|+-++........+..+.
T Consensus        98 ~d~v~d~~g~~~~~~~~~~l~  118 (179)
T d1qora2          98 VRVVYDSVGRDTWERSLDCLQ  118 (179)
T ss_dssp             EEEEEECSCGGGHHHHHHTEE
T ss_pred             eEEEEeCccHHHHHHHHHHHh
Confidence            789999987666655544443

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.023  Score=55.92  Aligned_cols=92  Identities=16%  Similarity=0.218  Sum_probs=55.0

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcC-CCccCCCCC----------CCCc--eEE----
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHC-NCRYFPEQK----------LPEN--VIA----  189 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~-~~~~~~~~~----------l~~~--i~a----  189 (458)
                      ..||.|||+|.+|+.++..|+..|. -+++++|.+.=....+.++-+ ....++..+          +.+.  +..    
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gv-g~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~  115 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGF-RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNK  115 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTC-CCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecc
Confidence            4799999999999999999999995 378999876421112222110 000110000          0111  111    


Q ss_pred             -eCCHHhhcCCCCEEEEcCccccHHHHHHhh
Q 012720          190 -TTDAKTALLGADYCLHAMPVQFSSSFLEGI  219 (458)
Q Consensus       190 -~~~~~ea~~~aDiVilaVp~~~v~~vl~~i  219 (458)
                       .+..++.++++|+||.|+-....+..+.+.
T Consensus       116 i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~  146 (426)
T d1yovb1         116 IQDFNDTFYRQFHIIVCGLDSIIARRWINGM  146 (426)
T ss_dssp             GGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred             ccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence             112235578999999999887666666554

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.22  Score=44.53  Aligned_cols=83  Identities=18%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.+.- .                       ..+..+.+=
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G--~~Vv~~~r~~~~l~~~~~~~-~-----------------------~~~~~~~~D   58 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARG--AKVIGTATSENGAQAISDYL-G-----------------------ANGKGLMLN   58 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHH-G-----------------------GGEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHh-C-----------------------CCCcEEEEE
Confidence            45556685 789999999999999  99999999998888776531 0                       001111111


Q ss_pred             C-ccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 M-PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 V-p~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      + ...+++++++.+.....+=.++|+.. |+.
T Consensus        59 v~~~~~v~~~~~~~~~~~g~iDilVnnA-g~~   89 (243)
T d1q7ba_          59 VTDPASIESVLEKIRAEFGEVDILVNNA-GIT   89 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECC-CCC
T ss_pred             ecCHHHhhhhhhhhhcccCCcceehhhh-hhc
Confidence            1 23567778888776665555777665 543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.033  Score=52.03  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      |||.|.|+ |-+|+.++..|.+.|. ++|+++|+....
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~-~~V~~ld~~~~~   37 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDA   37 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCcc
Confidence            79999996 9999999999998882 489999886543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.70  E-value=0.19  Score=45.26  Aligned_cols=85  Identities=9%  Similarity=0.045  Sum_probs=56.1

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|-|+ +.||.++|..|++.|  ++|.+.+|++++++++.++- .          ..+..        -.+|+   
T Consensus         5 gK~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~~~~~~~~~-~----------~~~~~--------~~~Dv---   60 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAG--ARVVLADVLDEEGAATAREL-G----------DAARY--------QHLDV---   60 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT-G----------GGEEE--------EECCT---
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHh-C----------CceEE--------EEccc---
Confidence            467889996 679999999999999  99999999998877665431 0          00110        01111   


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                       ....+++.+++.+.....+=.++|+.. |+.
T Consensus        61 -~~~~~v~~~~~~~~~~~g~iDilVnnA-g~~   90 (254)
T d1hdca_          61 -TIEEDWQRVVAYAREEFGSVDGLVNNA-GIS   90 (254)
T ss_dssp             -TCHHHHHHHHHHHHHHHSCCCEEEECC-CCC
T ss_pred             -CCHHHHHHHHHHHHHHcCCccEEEecC-ccc
Confidence             123457777777766555445777765 554

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.69  E-value=0.038  Score=51.47  Aligned_cols=34  Identities=18%  Similarity=0.143  Sum_probs=31.5

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      ..|+|||+|.-|.++|..|.++|  .+|+++++.++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G--~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCC--CCEEEEEcCCC
Confidence            47999999999999999999999  89999998764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.67  E-value=0.17  Score=46.09  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=36.4

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|-|+ +.+|.++|..|++.|  ++|.+.+|++++++++.+
T Consensus         5 gK~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~l~~~~~   47 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEG--AKVAVLDKSAERLAELET   47 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            356778885 899999999999999  999999999988777654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.053  Score=48.84  Aligned_cols=41  Identities=17%  Similarity=0.193  Sum_probs=33.3

Q ss_pred             CeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      +++.|.| ++.+|.++|..|+++|  ++|.+.+|++++++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G--~~Vi~~~r~~~~l~~~~~   48 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREG--AKVIATDINESKLQELEK   48 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHGGGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh
Confidence            3444445 6999999999999999  999999999987665544

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.55  E-value=0.032  Score=50.21  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |||.|.|+ |-+|+.++..|.+.|  ++|+..+|.+
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g--~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKN--VEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSS--EEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CEEEEeechh
Confidence            78999997 999999999999999  9999999864

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.50  E-value=0.076  Score=45.37  Aligned_cols=96  Identities=18%  Similarity=0.257  Sum_probs=57.9

Q ss_pred             CCeEEEECcc-hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe--CCHHhhcCCCCEE
Q 012720          127 TNKVVVLGGG-SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT--TDAKTALLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG-~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~--~~~~ea~~~aDiV  203 (458)
                      .+++.|||-+ .+|.++|..|++.|  ..|+.++.+...  .+.. +.....  .......+...  +.+.+....+|++
T Consensus        29 GK~vvVIGrS~iVG~Pla~lL~~~g--aTVt~~~~~~~~--~~~~-~~~~~~--~~~~~~~~~~~~~~~lk~~~~~aDIv  101 (171)
T d1edza1          29 GKKCIVINRSEIVGRPLAALLANDG--ATVYSVDVNNIQ--KFTR-GESLKL--NKHHVEDLGEYSEDLLKKCSLDSDVV  101 (171)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTS--CEEEEECSSEEE--EEES-CCCSSC--CCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             CCEEEEECCccccHHHHHHHHHHCC--CEEEEecccccc--cccc-ccceee--eeeccccccccchhHHhhccccCCEE
Confidence            6799999966 56999999999998  899988765321  0000 000000  00000011111  1245556689999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      |.+++.....  +  -..++++|+++|+..
T Consensus       102 IsavG~p~~~--i--~~d~ik~GavvIDvG  127 (171)
T d1edza1         102 ITGVPSENYK--F--PTEYIKEGAVCINFA  127 (171)
T ss_dssp             EECCCCTTCC--B--CTTTSCTTEEEEECS
T ss_pred             EEccCCCccc--c--ChhhcccCceEeecc
Confidence            9999864321  0  145778899999875

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.36  E-value=0.27  Score=44.04  Aligned_cols=41  Identities=27%  Similarity=0.422  Sum_probs=34.5

Q ss_pred             CeEEEE-Cc-chHHHHHHHHHHh---cCCCCeEEEEeCCHHHHHHHHh
Q 012720          128 NKVVVL-GG-GSFGTAMAAHVAN---KKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~II-Ga-G~mG~~iA~~La~---aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      -||+|| |+ +.+|.++|..|++   +|  ++|.+.+|+++.++.+.+
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G--~~Vv~~~r~~~~l~~~~~   51 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPG--SVMLVSARSESMLRQLKE   51 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCC--CEEEEEECCHHHHHHHHH
Confidence            478888 75 6899999999996   57  999999999988877655

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.068  Score=49.45  Aligned_cols=32  Identities=16%  Similarity=0.396  Sum_probs=29.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r  160 (458)
                      ++||.|.|+ |-+|+.++..|.+.|  ++|+.+++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g--~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDG--HEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeC
Confidence            378999995 999999999999999  99999986

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.22  E-value=0.061  Score=50.38  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=48.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHH--HHHHhh-cCCCccCCCCCCCCceEEeCC---HHhhcCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVC--QSINEK-HCNCRYFPEQKLPENVIATTD---AKTALLG  199 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~--e~l~~~-g~~~~~~~~~~l~~~i~a~~~---~~ea~~~  199 (458)
                      +++|.|+|+ |.+|+.++..|.++|  ++|+++.|+....  +.+... +.... ..+        ..++   .+.++..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G--~~V~~l~R~~~~~~~~~~~~~~~v~~~-~gD--------~~d~~~~~~~a~~~   71 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSLKGLIAEELQAIPNVTLF-QGP--------LLNNVPLMDTLFEG   71 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCSCSHHHHHHHTSTTEEEE-ESC--------CTTCHHHHHHHHTT
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCC--CeEEEEECCcchhhhhhhcccCCCEEE-Eee--------CCCcHHHHHHHhcC
Confidence            578999995 999999999999999  9999999976432  222221 11100 000        0111   3346788


Q ss_pred             CCEEEEcCcc
Q 012720          200 ADYCLHAMPV  209 (458)
Q Consensus       200 aDiVilaVp~  209 (458)
                      +|.+++..+.
T Consensus        72 ~~~~~~~~~~   81 (350)
T d1xgka_          72 AHLAFINTTS   81 (350)
T ss_dssp             CSEEEECCCS
T ss_pred             CceEEeeccc
Confidence            9999888774

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.22  E-value=0.05  Score=48.13  Aligned_cols=33  Identities=30%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .|.|||+|..|...|..|+++|  ++|+++++.+.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G--~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence            5999999999999999999999  99999998764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.14  E-value=0.087  Score=47.37  Aligned_cols=39  Identities=10%  Similarity=0.036  Sum_probs=33.1

Q ss_pred             cCCCeEEEECc-ch--HHHHHHHHHHhcCCCCeEEEEeCCHHHH
Q 012720          125 ERTNKVVVLGG-GS--FGTAMAAHVANKKSQLKVYMLMRDPAVC  165 (458)
Q Consensus       125 ~~~~kI~IIGa-G~--mG~~iA~~La~aG~~~~V~v~~r~~~~~  165 (458)
                      ++.+++.|.|+ |.  ||.++|..|++.|  .+|.+.+|++++.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~G--a~Vil~~~~~~~~   45 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQG--AQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTT--CEEEEEECSCHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcC--CEEEEEeCChHHH
Confidence            34578999996 54  9999999999999  9999999987654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.13  E-value=0.24  Score=44.51  Aligned_cols=83  Identities=11%  Similarity=0.076  Sum_probs=54.7

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +++.|-|+ +.+|.++|..|++.|  ++|.+.+|+.+.++.+.++- .          .++...        .+|+    
T Consensus         6 K~alVTGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~-~----------~~~~~~--------~~Dv----   60 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREG--ARVAIADINLEAARATAAEI-G----------PAACAI--------ALDV----   60 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTT--EEEEEEESCHHHHHHHHHHH-C----------TTEEEE--------ECCT----
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHh-C----------CceEEE--------EeeC----
Confidence            46777786 889999999999999  99999999998887766531 0          001100        1111    


Q ss_pred             CccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          207 MPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       207 Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      ....+++++++.+.....+=.++|+.. |+
T Consensus        61 t~~~~v~~~~~~~~~~~g~iDilVnnA-g~   89 (256)
T d1k2wa_          61 TDQASIDRCVAELLDRWGSIDILVNNA-AL   89 (256)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECC-CC
T ss_pred             CCHHHHHHHHHHHHHHhCCccEEEeec-cc
Confidence            123567777777766555445677665 44

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.066  Score=50.00  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=29.1

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeC
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r  160 (458)
                      |||.|+|+ |-+|+.++..|.+.|  ++|+++||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g--~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNG--HDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEC
Confidence            78999995 999999999999999  99999986

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=0.067  Score=48.01  Aligned_cols=35  Identities=23%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||.|||+|.+|+.+|..|++.|. -+++++|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            4699999999999999999999994 4789998775

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.87  E-value=0.14  Score=45.75  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g  172 (458)
                      .+++.|.|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.++.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~   49 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASG--AKVVAVTRTNSDLVSLAKEC   49 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhc
Confidence            467888896 679999999999999  99999999999888877653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.83  E-value=0.21  Score=45.35  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=35.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|-|+ +.+|.++|..|++.|  .+|.+.+|+++.++++.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~G--a~V~~~~r~~~~l~~~~~   46 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEG--AQVTITGRNEDRLEETKQ   46 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            456778885 779999999999999  999999999988776654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.81  E-value=0.22  Score=44.77  Aligned_cols=82  Identities=11%  Similarity=0.071  Sum_probs=55.3

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.++-.                          ...+++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G--a~V~~~~~~~~~~~~~~~~~~--------------------------~~~~~~   57 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEG--AKVAFSDINEAAGQQLAAELG--------------------------ERSMFV   57 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHC--------------------------TTEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhC--------------------------CCeEEE
Confidence            345666685 679999999999999  999999999988877765310                          011111


Q ss_pred             c---CccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 A---MPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 a---Vp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      .   .....++++++.+.....+=.++|+.. |+.
T Consensus        58 ~~Dv~~~~~~~~~~~~~~~~~g~iDilVnnA-G~~   91 (253)
T d1hxha_          58 RHDVSSEADWTLVMAAVQRRLGTLNVLVNNA-GIL   91 (253)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHCSCCEEEECC-CCC
T ss_pred             EeecCCHHHHHHHHHHHHHHhCCCCeEEecc-ccc
Confidence            1   123457777777766555556777766 543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.65  E-value=0.083  Score=44.69  Aligned_cols=89  Identities=18%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCH-H--hhcCCCC
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDA-K--TALLGAD  201 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~-~--ea~~~aD  201 (458)
                      ...+|.|.|+ |.+|......+...|  .+|+..++++++.+.+++.|....           .-..+. .  ...+++|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~lGa~~~-----------i~~~~~~~~~~~~~g~D   93 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLALGAEEA-----------ATYAEVPERAKAWGGLD   93 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHHTTCSEE-----------EEGGGHHHHHHHTTSEE
T ss_pred             CCCEEEEEeccccchhhhhhhhcccc--ccccccccccccccccccccccee-----------eehhhhhhhhhcccccc
Confidence            3568999996 999998877777777  899999999888888877664311           111111 1  1235689


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      +||-|+.. .+...+    ..++++-.++.+
T Consensus        94 ~v~d~~G~-~~~~~~----~~l~~~G~~v~~  119 (171)
T d1iz0a2          94 LVLEVRGK-EVEESL----GLLAHGGRLVYI  119 (171)
T ss_dssp             EEEECSCT-THHHHH----TTEEEEEEEEEC
T ss_pred             ccccccch-hHHHHH----HHHhcCCcEEEE
Confidence            99888763 333333    344444455544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=91.56  E-value=0.16  Score=45.87  Aligned_cols=85  Identities=21%  Similarity=0.299  Sum_probs=53.9

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEc
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHA  206 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVila  206 (458)
                      +++.|-|+ +.+|.++|..|+++|  ++|.+.+|+++..+++.++-                    .++  .+.++..+.
T Consensus        10 K~alITGas~GIG~aia~~la~~G--a~V~i~~r~~~~~~~~~~~~--------------------~~~--~g~~~~~~~   65 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAG--ANVAVIYRSAADAVEVTEKV--------------------GKE--FGVKTKAYQ   65 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTT--EEEEEEESSCTTHHHHHHHH--------------------HHH--HTCCEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH--------------------HHH--hCCceEEEE
Confidence            45667785 679999999999999  99999999987655544321                    001  012233332


Q ss_pred             C---ccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          207 M---PVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       207 V---p~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +   ...+++.+++++.....+=.++|... |+.
T Consensus        66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA-g~~   98 (260)
T d1h5qa_          66 CDVSNTDIVTKTIQQIDADLGPISGLIANA-GVS   98 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHSCSEEEEEECC-CCC
T ss_pred             ccCCCHHHHHHHHHHHHHHhCCCcEecccc-ccc
Confidence            2   23457777777766655445667665 543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.36  E-value=0.067  Score=44.31  Aligned_cols=31  Identities=29%  Similarity=0.591  Sum_probs=27.4

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ||.|||+|..|.-+|..|++ +  .+|+++++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~--~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-T--YEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T--SEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-C--CCEEEEeccc
Confidence            89999999999999999975 5  7999998753

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.30  E-value=0.17  Score=45.27  Aligned_cols=83  Identities=10%  Similarity=0.029  Sum_probs=54.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      .+++.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++++.+.. +            +..       + .+|+   
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G--~~V~~~~r~~~~l~~~~~~~-~------------~~~-------~-~~Dv---   58 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEG--ARLVACDIEEGPLREAAEAV-G------------AHP-------V-VMDV---   58 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHTT-T------------CEE-------E-ECCT---
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHc-C------------CeE-------E-EEec---
Confidence            356677785 679999999999999  99999999998887766531 1            110       0 1121   


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                       .....++.+++++.....+=.++|+.. |+.
T Consensus        59 -~~~~~v~~~~~~~~~~~g~iDilVnnA-G~~   88 (242)
T d1ulsa_          59 -ADPASVERGFAEALAHLGRLDGVVHYA-GIT   88 (242)
T ss_dssp             -TCHHHHHHHHHHHHHHHSSCCEEEECC-CCC
T ss_pred             -CCHHHHHHHHHHHHHhcCCceEEEECC-ccc
Confidence             123456777777765555445677765 543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.26  E-value=0.17  Score=45.16  Aligned_cols=42  Identities=14%  Similarity=0.197  Sum_probs=35.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+++.|.|+ +.+|.++|..|+++|  ++|.+.+|+.+++++..+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~   47 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREG--ASLVAVDREERLLAEAVA   47 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence            467778886 669999999999999  999999999987766654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.04  E-value=0.51  Score=43.41  Aligned_cols=97  Identities=15%  Similarity=0.103  Sum_probs=56.7

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEe-----------CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM-----------RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~-----------r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      .++|+|=|.|++|...|..|.+.|  ..|+.++           .+.+.+..+..........++..++     ..++  
T Consensus        36 gktvaIqGfGnVG~~~A~~L~e~G--akvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~-----~~~~--  106 (293)
T d1hwxa1          36 DKTFAVQGFGNVGLHSMRYLHRFG--AKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIY-----EGSI--  106 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT--CEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBC-----CSCG--
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccC-----Cccc--
Confidence            478999999999999999999999  8887654           3445555555443222222221111     1111  


Q ss_pred             hcCCCCEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          196 ALLGADYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       196 a~~~aDiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      .-.+||++|-|--...+..   +-.+.++ -.+|+-..||-
T Consensus       107 ~~~~~DIliPaA~~~~I~~---~~a~~l~-ak~I~EgAN~P  143 (293)
T d1hwxa1         107 LEVDCDILIPAASEKQLTK---SNAPRVK-AKIIAEGANGP  143 (293)
T ss_dssp             GGCCCSEEEECSSSSCBCT---TTGGGCC-CSEEECCSSSC
T ss_pred             ccCCccEEeeccccccccH---HHHHHHh-hCEEeccCCCC
Confidence            1248999998865433211   1223333 34666667654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.00  E-value=0.36  Score=43.02  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             CCeEEEECcc---hHHHHHHHHHHhcCCCCeEEEEeCCHHHHH
Q 012720          127 TNKVVVLGGG---SFGTAMAAHVANKKSQLKVYMLMRDPAVCQ  166 (458)
Q Consensus       127 ~~kI~IIGaG---~mG~~iA~~La~aG~~~~V~v~~r~~~~~e  166 (458)
                      .+++.|-|++   .+|.++|..|+++|  ++|.+.+|+++..+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~G--a~V~i~~~~~~~~~   48 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAG--AEVALSYQAERLRP   48 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTT--CEEEEEESSGGGHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHH
Confidence            4678888874   59999999999999  99999999875443

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.94  E-value=0.091  Score=46.84  Aligned_cols=33  Identities=12%  Similarity=0.111  Sum_probs=27.7

Q ss_pred             CeE-EEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKV-VVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI-~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ||| .|-|+ +.+|.++|..|++.|  ++|.+.+|++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~G--a~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAG--HQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCh
Confidence            455 55574 779999999999999  9999999875

>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: UDP-glucose dehydrogenase (UDPGDH), middle domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.75  E-value=0.12  Score=39.72  Aligned_cols=84  Identities=17%  Similarity=0.110  Sum_probs=51.6

Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHHHHcCCCccccccccCCcchhhhhccCCCccchHHHHhhCCCChHHHHhhccccchhh
Q 012720          332 MNLGNNSMAALVAQGCSEIRWLATKMGAKPATITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMNQVAEGV  411 (458)
Q Consensus       332 ~kl~~n~~~al~~~~l~E~~~la~a~Gi~~~~~~~~~g~gd~~~t~~~~~srn~~~g~~l~~g~~~e~~~~~~~~~~eg~  411 (458)
                      .|+..|...++-...++|+..+|++.|++...+.+.......+    +  ......|  .+-|.++  +          .
T Consensus         7 ~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~----~--~~~~~pg--~g~GG~C--l----------p   66 (98)
T d1dlja1           7 VKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRI----G--MHYNNPS--FGYGGYS--L----------P   66 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTT----C--SSSCCCC--SSCCSSH--H----------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcccc----C--CccccCC--CCccccc--C----------c
Confidence            3556677788888999999999999999976654321111000    0  0000111  1222232  1          3


Q ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHH
Q 012720          412 STAGAVIALAQKYNVKMPVLTAVARI  437 (458)
Q Consensus       412 kd~g~v~~lA~~~gv~~P~~~~v~~l  437 (458)
                      ||..++  ++.+.|++.++++++.+.
T Consensus        67 KD~~al--~~~~~~~~~~ll~~~~~~   90 (98)
T d1dlja1          67 KDTKQL--LANYNNIPQTLIEAIVSS   90 (98)
T ss_dssp             HHHHHH--HHHHTTSSCSHHHHHHHH
T ss_pred             ccHHHH--HHHhcCCCcHHHHHHHHH
Confidence            777777  467789999999988765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.64  E-value=0.079  Score=48.93  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             CeEEEECcchHHHHHHHHHH-----hcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVA-----NKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La-----~aG~~~~V~v~~r~~  162 (458)
                      --|.|||+|..|+.+|..|+     ++|  ++|++++|.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G--~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCC--CcEEEEcCCC
Confidence            36999999999999999997     467  9999999875

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.60  E-value=0.38  Score=48.08  Aligned_cols=35  Identities=9%  Similarity=0.119  Sum_probs=30.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..||+|||+|.+|+-++.+|+..|. ..++++|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            4699999999999999999999994 5799998654

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=90.55  E-value=2.3  Score=33.44  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             CCCeEEEECc-chHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCC
Q 012720          126 RTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GAD  201 (458)
Q Consensus       126 ~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aD  201 (458)
                      +..||.|-|. |.-|+.-+.+..+.|  -+|.. +....        .|..         ..++-++++.+|+++  ++|
T Consensus         5 k~trVlvQGiTG~~G~~ht~~m~~yG--T~vVaGVtPgk--------gG~~---------~~giPVf~sV~eAv~~~~~~   65 (119)
T d2nu7a1           5 KNTKVICQGFTGSQGTFHSEQAIAYG--TKMVGGVTPGK--------GGTT---------HLGLPVFNTVREAVAATGAT   65 (119)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT--CEEEEEECTTC--------TTEE---------ETTEEEESSHHHHHHHHCCC
T ss_pred             CCCcEEEEcCCCcHHHHHHHHHHHhC--CceEEEEccCC--------CCcc---------cCCCchhhHHHHHHHHhCCC
Confidence            3468999997 999999999999998  66653 33221        1111         124667888888765  789


Q ss_pred             EEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHH
Q 012720          202 YCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQII  248 (458)
Q Consensus       202 iVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l  248 (458)
                      .-++.||... .+.+++.+...++   .+|.++.|+.......+..++
T Consensus        66 ~SvIfVPp~~a~dA~~EAi~agI~---~iV~ITEgIP~~D~~~i~~~~  110 (119)
T d2nu7a1          66 ASVIYVPAPFCKDSILEAIDAGIK---LIITITEGIPTLDMLTVKVKL  110 (119)
T ss_dssp             EEEECCCGGGHHHHHHHHHHTTCS---EEEECCCCCCHHHHHHHHHHH
T ss_pred             eEEEeccHHHHHHHHHHHHHCCCC---EEEEecCCCCHHHHHHHHHHH
Confidence            9999999765 4555555655443   677788899875444444444

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.46  E-value=2.3  Score=33.93  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=65.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      ..||.|-|. |.-|+.-+.+..+.|  -+|.. +....        .|.         .-.++-++++.+||.+  ++|.
T Consensus        15 ~TrVivQGiTG~~G~~ht~~m~~YG--T~iVaGVtPgK--------gG~---------~~~giPVf~tV~eA~~~~~~da   75 (130)
T d1euca1          15 NTKVICQGFTGKQGTFHSQQALEYG--TNLVGGTTPGK--------GGK---------THLGLPVFNTVKEAKEQTGATA   75 (130)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHT--CEEEEEECTTC--------TTC---------EETTEEEESSHHHHHHHHCCCE
T ss_pred             CCeEEEEcCCCcHHHHHHHHHHHhc--CCeEEeeccCC--------CCc---------cccCccchhhHHHHHHhcCCcE
Confidence            468999997 999999999999998  67653 33221        111         1124667888888865  7999


Q ss_pred             EEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCCCcc
Q 012720          203 CLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELN  239 (458)
Q Consensus       203 VilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~~~  239 (458)
                      -++.||..+ ...+++.+...++   +||.++.|+...
T Consensus        76 SvIfVPp~~a~dAi~EAi~agI~---liV~ITEgIPv~  110 (130)
T d1euca1          76 SVIYVPPPFAAAAINEAIDAEVP---LVVCITEGIPQQ  110 (130)
T ss_dssp             EEECCCHHHHHHHHHHHHHTTCS---EEEECCCCCCHH
T ss_pred             EEEecCHHHHHHHHHHHHhCCCC---EEEEecCCCCHH
Confidence            999999755 5555566665554   678889898864

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.41  E-value=0.088  Score=44.07  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=28.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      .++|.|||+|..|.-+|..|.+.|  .+|+++.+.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g--~~v~v~~~~   35 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASG--WEGNIRLVG   35 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEEC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcC--CceEEEEec
Confidence            468999999999999999999998  777765444

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.20  E-value=0.38  Score=43.36  Aligned_cols=85  Identities=22%  Similarity=0.216  Sum_probs=52.5

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA-VCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCL  204 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~-~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVi  204 (458)
                      .+.+.|.| ++.+|.++|..|+++|  ++|.+.+|+.+ .++.+.+.                     ..+  .+.+++.
T Consensus         7 gK~alITGas~GIG~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~---------------------~~~--~g~~~~~   61 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEK--AKVVVNYRSKEDEANSVLEE---------------------IKK--VGGEAIA   61 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHH---------------------HHH--TTCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHH---------------------HHh--cCCcEEE
Confidence            34566667 5889999999999999  99999998753 44444331                     111  1223333


Q ss_pred             EcCc---cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          205 HAMP---VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       205 laVp---~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      +.+-   ..+++++++.+.....+=.++|+.. |+.
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA-G~~   96 (261)
T d1geea_          62 VKGDVTVESDVINLVQSAIKEFGKLDVMINNA-GLE   96 (261)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC-CCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCCCEeeccc-eec
Confidence            3222   3457777777665555445777765 543

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.05  E-value=2.5  Score=33.24  Aligned_cols=101  Identities=15%  Similarity=0.136  Sum_probs=68.6

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC--CCCE
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYM-LMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL--GADY  202 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v-~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~--~aDi  202 (458)
                      ..||.|-|. |..|+.-+.+..+.|  -+|.. +....        .|..         -.++-++++.+||++  ++|.
T Consensus         7 ~trVivQGiTG~~G~~ht~~m~~yG--T~iVaGVtPgk--------gG~~---------~~giPVf~tV~eAv~~~~~d~   67 (121)
T d1oi7a1           7 ETRVLVQGITGREGQFHTKQMLTYG--TKIVAGVTPGK--------GGME---------VLGVPVYDTVKEAVAHHEVDA   67 (121)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHT--CEEEEEECTTC--------TTCE---------ETTEEEESSHHHHHHHSCCSE
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHHhC--CceEeeeecCC--------CCcE---------EECCchHhhHHHHHHhcCCeE
Confidence            458999996 999999999999998  66653 33221        1211         124667888888754  7899


Q ss_pred             EEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHH
Q 012720          203 CLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIP  249 (458)
Q Consensus       203 VilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~  249 (458)
                      -++.||... ...+++.+...++   .||.++.|+.......+.+++.
T Consensus        68 SvIfVPp~~a~dAi~EAi~agI~---liv~ITEgVPv~Dm~~i~~~~~  112 (121)
T d1oi7a1          68 SIIFVPAPAAADAALEAAHAGIP---LIVLITEGIPTLDMVRAVEEIK  112 (121)
T ss_dssp             EEECCCHHHHHHHHHHHHHTTCS---EEEECCSCCCHHHHHHHHHHHH
T ss_pred             EEEeeCHHHHHHHHHHHHhCCCc---EEEEecCCCCHHHHHHHHHHHH
Confidence            999999755 5555566655443   6778898998754444444443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.17  Score=44.96  Aligned_cols=42  Identities=17%  Similarity=0.191  Sum_probs=34.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+.+.|-|+ +.+|.++|..|++.|  ++|.+.+|+++.++.+.+
T Consensus         5 GKvalITGas~GIG~aia~~la~~G--~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQG--ASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECTTSSHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHH
Confidence            345667785 779999999999999  999999999877766554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.81  E-value=0.19  Score=42.59  Aligned_cols=92  Identities=11%  Similarity=0.049  Sum_probs=58.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHh-----hcCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKT-----ALLGA  200 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~e-----a~~~a  200 (458)
                      ..+|.|.|+ |.+|.+........|  .+|+..++++++.+.+++.|....+.....        +..++     .-.+.
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~--------~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQIGFDAAFNYKTV--------NSLEEALKKASPDGY   99 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTTCSEEEETTSC--------SCHHHHHHHHCTTCE
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhhhhhhhcccccc--------cHHHHHHHHhhcCCC
Confidence            468999998 667777666666667  899999999999988888775322111000        01111     12468


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEe
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISL  232 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~  232 (458)
                      |+||-|+......    .....++++-.++.+
T Consensus       100 d~v~D~vG~~~~~----~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         100 DCYFDNVGGEFLN----TVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EEEEESSCHHHHH----HHGGGEEEEEEEEEC
T ss_pred             ceeEEecCchhhh----hhhhhccCCCeEEee
Confidence            9999999754444    344445555555555

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.77  E-value=0.51  Score=42.48  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHH
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRD-PAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~-~~~~e~l~  169 (458)
                      .+++.|-| ++.+|.++|..|+++|  ++|.+.+|+ ++.++.+.
T Consensus        18 gK~~lITGas~GIG~aia~~la~~G--a~Vvi~~~~~~~~~~~~~   60 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVV   60 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCchHHHHHHH
Confidence            46788888 5999999999999999  999998876 44444443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=89.74  E-value=0.49  Score=42.58  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhh----cCCCccCCCCCCCCceEEeCCHHhhc--CCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEK----HCNCRYFPEQKLPENVIATTDAKTAL--LGA  200 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~----g~~~~~~~~~~l~~~i~a~~~~~ea~--~~a  200 (458)
                      .++|.=+|+|. |. ++..+++.|  .+|+.+|.+++.++..+++    +.+.          .+ ...+..+..  ..+
T Consensus       121 g~~VLDiGcGs-G~-l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~----------~~-~~~d~~~~~~~~~f  185 (254)
T d2nxca1         121 GDKVLDLGTGS-GV-LAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRP----------RF-LEGSLEAALPFGPF  185 (254)
T ss_dssp             TCEEEEETCTT-SH-HHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCC----------EE-EESCHHHHGGGCCE
T ss_pred             cCEEEEcccch-hH-HHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCce----------eE-Eecccccccccccc
Confidence            46898899997 43 455677778  8999999999877766543    2221          11 223444432  468


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~  250 (458)
                      |+|+...-.....++++.+...++||..++. + |+..+....+.+.+.+
T Consensus       186 D~V~ani~~~~l~~l~~~~~~~LkpGG~lil-S-gil~~~~~~v~~~~~~  233 (254)
T d2nxca1         186 DLLVANLYAELHAALAPRYREALVPGGRALL-T-GILKDRAPLVREAMAG  233 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEEEEEEE-E-EEEGGGHHHHHHHHHH
T ss_pred             chhhhccccccHHHHHHHHHHhcCCCcEEEE-E-ecchhhHHHHHHHHHH
Confidence            9998877677788888888888888776552 3 5544433334444433

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.73  E-value=0.056  Score=45.77  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=25.2

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYML  158 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~  158 (458)
                      +.+|.|||+|..|.-+|..|.+.|  .+|++.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g--~~v~i~   32 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAG--YQGLIT   32 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHT--CCSCEE
T ss_pred             CCCEEEECccHHHHHHHHHHHhcC--CceEEE
Confidence            457999999999999999999998  554443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.69  E-value=0.17  Score=39.67  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhc---CCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANK---KSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~a---G~~~~V~v~~r~~  162 (458)
                      .++|+|||+|..|.-+|..|++.   |  .+|+++.|.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g--~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARG--GQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTT--CEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccc--cccceecccc
Confidence            46899999999999999877654   5  8999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.69  E-value=0.14  Score=42.21  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=29.2

Q ss_pred             CeEEEE--CcchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVL--GGGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~II--GaG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .++.|+  |.|.+|.-+|..|++.|  ++|+++.+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G--~~Vtlv~~~~~   75 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVHL   75 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSCT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcC--CeEEEEecCCc
Confidence            345555  99999999999999999  99999998753

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.17  Score=45.09  Aligned_cols=40  Identities=10%  Similarity=0.200  Sum_probs=32.5

Q ss_pred             CCeEEEECcc---hHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720          127 TNKVVVLGGG---SFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (458)
Q Consensus       127 ~~kI~IIGaG---~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l  168 (458)
                      .++|.|.|++   .+|.++|..|++.|  ++|++.+|+++..+.+
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G--~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREG--AELAFTYQNDKLKGRV   47 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTT--CEEEEEESSTTTHHHH
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH
Confidence            5678888865   48999999999999  9999999987644443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.61  E-value=0.13  Score=40.61  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~r~~  162 (458)
                      .++|+|||+|.+|.-+|..|.+-|. +.+|+++.+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            4689999999999999977765441 26899998765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.56  E-value=0.28  Score=43.40  Aligned_cols=39  Identities=21%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~  167 (458)
                      .+++.|.|+ +.+|.++|..|++.|  ++|.+.+|+++.+++
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~G--a~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEG--AEVTICARNEELLKR   43 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTT--CEEEEEESCHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHh
Confidence            467899996 779999999999999  999999999876543

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.42  E-value=0.095  Score=48.96  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=28.3

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ||||.|.| +|-+|+.++..|.++|  ++|.+++++
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g--~~v~v~~~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNH--PDVHVTVLD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHC--TTCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCC--CCeEEEEEe
Confidence            68999999 5999999999999999  776666543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.10  E-value=1.2  Score=39.11  Aligned_cols=98  Identities=18%  Similarity=0.190  Sum_probs=58.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH--------HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP--------AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~--------~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      ..||.|+|+|.-|..+|..|.+.+. .+++++||.-        ...+..+.....      ..-+  .....++.+++.
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~------~~~~--~~~~~~l~~~l~   96 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIAR------ITNP--ERLSGDLETALE   96 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHH------TSCT--TCCCSCHHHHHT
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHh------hhcc--hhhhcchHhhcc
Confidence            4699999999999999999998884 6888998761        111111100000      0000  012236778888


Q ss_pred             CCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          199 GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       199 ~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      ++++++....... .++.+    ..+.+.-+|..++|-..
T Consensus        97 g~~~~~g~~~~~~~~~e~m----~~~~~rPIIFpLSNPt~  132 (222)
T d1vl6a1          97 GADFFIGVSRGNILKPEWI----KKMSRKPVIFALANPVP  132 (222)
T ss_dssp             TCSEEEECSCSSCSCHHHH----TTSCSSCEEEECCSSSC
T ss_pred             CcceeccccccccccHHHH----hhcCCCCEEEecCCCcc
Confidence            9998777665333 33332    22345667788888543

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.95  E-value=0.35  Score=35.35  Aligned_cols=44  Identities=16%  Similarity=0.253  Sum_probs=37.0

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhc
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKH  172 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g  172 (458)
                      .++|.|.|+ |.+|+.....+...|  .+|+...+++++.+.+++.|
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G--~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHHHT
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHHCC
Confidence            468999886 999998888777778  89999999998888887654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.89  E-value=0.21  Score=46.27  Aligned_cols=36  Identities=17%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      .|||.|.| .|-+|+.++..|.++|  ++|.+++|+...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g--~~V~~~~r~~~~   44 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMG--ATVKGYSLTAPT   44 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCc
Confidence            48999999 5999999999999999  999999997643

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.81  E-value=0.68  Score=39.40  Aligned_cols=71  Identities=15%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             CCeEEEEC-c-chHHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCC
Q 012720          127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRD-----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLG  199 (458)
Q Consensus       127 ~~kI~IIG-a-G~mG~~iA~~La~aG~~~~V~v~~r~-----~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~  199 (458)
                      ..||++|| . -++...+...+++-|  .+|++....     ++..+.+.+....        ....+..++++++++++
T Consensus         5 ~lkia~vGD~~nnV~~Sli~~~~~~G--~~l~l~~P~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~eai~~   74 (185)
T d1dxha2           5 DISYAYLGDARNNMGNSLLLIGAKLG--MDVRIAAPKALWPHDEFVAQCKKFAEE--------SGAKLTLTEDPKEAVKG   74 (185)
T ss_dssp             GCEEEEESCCSSHHHHHHHHHHHHTT--CEEEEECCGGGSCCHHHHHHHHHHHHH--------HTCEEEEESCHHHHTTT
T ss_pred             CCEEEEEcCCcchHHHHHHHHHHHcC--CEEEEEccHHHHhhhHHHHHHHHHhhc--------cCCeEEEEeChhhcccc
Confidence            46999999 4 589999999999888  999999864     2333333321100        00246788999999999


Q ss_pred             CCEEEEcC
Q 012720          200 ADYCLHAM  207 (458)
Q Consensus       200 aDiVilaV  207 (458)
                      +|+|..-+
T Consensus        75 aDvVyt~~   82 (185)
T d1dxha2          75 VDFVHTDV   82 (185)
T ss_dssp             CSEEEECC
T ss_pred             ccEEEeeh
Confidence            99998755

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.80  E-value=0.18  Score=43.38  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      -|.|||+|.-|...|..+++.|  .+|.+++++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G--~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYG--QKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT--CCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CEEEEEecc
Confidence            4899999999999999999999  999999875

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.70  E-value=0.37  Score=43.14  Aligned_cols=42  Identities=10%  Similarity=0.174  Sum_probs=32.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~-~r~~~~~e~l~~  170 (458)
                      .+.+.|.|+ +.+|.++|..|++.|  ++|++. .|+++..+.+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~G--~~Vvi~~~~~~~~~~~~~~   49 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRG--ASVVVNYGSSSKAAEEVVA   49 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEcCCChHHHHHHHH
Confidence            456777875 779999999999999  999985 566665555544

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.66  E-value=0.16  Score=44.04  Aligned_cols=37  Identities=22%  Similarity=0.423  Sum_probs=31.8

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      |.+.--|.|||+|.-|...|..+++.|  .+|.++++..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G--~kV~lie~~~   38 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRG   38 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence            333446999999999999999999999  9999999754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.50  E-value=0.15  Score=43.51  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      .++|.|||+|.-|..-|..|++.|  .+|.++++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g--~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcC--CcEEEEEee
Confidence            368999999999999999999999  899999854

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.43  E-value=0.95  Score=37.36  Aligned_cols=68  Identities=22%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             CCeEEEEC-c-chHHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHH---H-hhcCCCccCCCCCCCCceEEeCCHHh
Q 012720          127 TNKVVVLG-G-GSFGTAMAAHVANKKSQLKVYMLMRDP-----AVCQSI---N-EKHCNCRYFPEQKLPENVIATTDAKT  195 (458)
Q Consensus       127 ~~kI~IIG-a-G~mG~~iA~~La~aG~~~~V~v~~r~~-----~~~e~l---~-~~g~~~~~~~~~~l~~~i~a~~~~~e  195 (458)
                      ..||++|| + .++-..+...+++-|  .++++.....     +..+..   . +.+            ..+..++|+++
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g--~~i~~~~P~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~d~~~   68 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMG--MNFVACGPEELKPRSDVFKRCQEIVKETD------------GSVSFTSNLEE   68 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTT--CEEEEESCGGGCCCHHHHHHHHHHHHHHC------------CEEEEESCHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcC--CEEEEecchhhhhhhhHHHHHHHHHhhcC------------CceEEEecHHH
Confidence            57999999 4 578898998888888  8999887643     222221   1 111            24678899999


Q ss_pred             hcCCCCEEEEcCc
Q 012720          196 ALLGADYCLHAMP  208 (458)
Q Consensus       196 a~~~aDiVilaVp  208 (458)
                      +++++|+|..-.-
T Consensus        69 ai~~aDviyt~~~   81 (161)
T d1vlva2          69 ALAGADVVYTDVW   81 (161)
T ss_dssp             HHTTCSEEEECCC
T ss_pred             hhhhhhheeccce
Confidence            9999999998653

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=88.36  E-value=0.93  Score=40.41  Aligned_cols=41  Identities=15%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             CeEEEE-C-cchHHHHHHHHHHhcCCCCeEEEEeC-CHHHHHHHHh
Q 012720          128 NKVVVL-G-GGSFGTAMAAHVANKKSQLKVYMLMR-DPAVCQSINE  170 (458)
Q Consensus       128 ~kI~II-G-aG~mG~~iA~~La~aG~~~~V~v~~r-~~~~~e~l~~  170 (458)
                      |=|+|| | ++.+|.++|..|+++|  ++|.+.++ +++..+.+.+
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~G--a~V~i~~~~~~~~~~~~~~   45 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEG--YAVCLHYHRSAAEANALSA   45 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHHH
Confidence            347777 5 5789999999999999  99998654 5555555443

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.29  E-value=0.13  Score=43.63  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      ..+|.|||.|..|..-|..+++.|  .+|+++++..
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g--~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcC--CceEEEEeec
Confidence            357999999999999999999999  9999998654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.13  E-value=0.19  Score=45.45  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=29.7

Q ss_pred             eEEEECcchHHHHHHHHHHh-cCCCCeEEEEeCCHH
Q 012720          129 KVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLMRDPA  163 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~r~~~  163 (458)
                      .|.|||+|.-|...|..|++ .|  ++|+++++.+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G--~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccC--CeEEEEecCCC
Confidence            59999999999999999987 48  99999998763

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.08  E-value=0.16  Score=39.42  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=27.9

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+||+|||+|+-|.-+|..|++..  .+|++..|..
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~a--k~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhc--CEEEEEEecC
Confidence            589999999999999999999876  5666555544

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.91  E-value=0.24  Score=44.12  Aligned_cols=44  Identities=18%  Similarity=0.309  Sum_probs=34.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINE  170 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~  170 (458)
                      .+.|.|-|+ +.+|.++|..|++.|..+.|++.+|+.++++++++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~   47 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence            467888885 89999999999999833467888999887776654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=87.89  E-value=0.21  Score=46.68  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      -|.|||+|.-|+.+|.+|+++|  ++|.++.+.
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAG--VQTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCc--CeEEEEecC
Confidence            3789999999999999999999  999999875

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=87.87  E-value=0.58  Score=41.78  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=27.8

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEe
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLM  159 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~  159 (458)
                      .++|+|=|.|++|...|..|.+.|  ..|+.++
T Consensus        31 g~~v~IqGfGnVG~~~a~~L~~~G--akvv~vs   61 (242)
T d1v9la1          31 GKTVAIQGMGNVGRWTAYWLEKMG--AKVIAVS   61 (242)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTT--CEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC--CeEEEee
Confidence            579999999999999999999999  8887554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.76  E-value=0.45  Score=40.25  Aligned_cols=93  Identities=24%  Similarity=0.290  Sum_probs=60.6

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhh---cCCCCEE
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTA---LLGADYC  203 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea---~~~aDiV  203 (458)
                      .+|.=||+|.=+.++  .|++.+  .+|+.+|.+++.++..+++-..      ..+..++++. .|..+.   ...+|+|
T Consensus        35 ~~VLDiGcGsG~~s~--~lA~~~--~~V~avD~~~~~l~~a~~n~~~------~gl~~~v~~~~gda~~~~~~~~~~D~v  104 (186)
T d1l3ia_          35 DVAVDVGCGTGGVTL--ELAGRV--RRVYAIDRNPEAISTTEMNLQR------HGLGDNVTLMEGDAPEALCKIPDIDIA  104 (186)
T ss_dssp             CEEEEESCTTSHHHH--HHHTTS--SEEEEEESCHHHHHHHHHHHHH------TTCCTTEEEEESCHHHHHTTSCCEEEE
T ss_pred             CEEEEEECCeEcccc--cccccc--eEEEEecCCHHHHHHHHHHHHH------cCCCcceEEEECchhhcccccCCcCEE
Confidence            466667776644433  345556  7899999999887776654111      0112234332 344433   3578999


Q ss_pred             EEcCccccHHHHHHhhhhcCCCCCeEE
Q 012720          204 LHAMPVQFSSSFLEGISDYVDPGLPFI  230 (458)
Q Consensus       204 ilaVp~~~v~~vl~~i~~~l~~~~ivV  230 (458)
                      ++.-+.....++++.+...++++..++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~LkpgG~lv  131 (186)
T d1l3ia_         105 VVGGSGGELQEILRIIKDKLKPGGRII  131 (186)
T ss_dssp             EESCCTTCHHHHHHHHHHTEEEEEEEE
T ss_pred             EEeCccccchHHHHHHHHHhCcCCEEE
Confidence            998887778889999888888876654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=87.66  E-value=0.2  Score=46.51  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      --+.|||+|.-|+.+|.+|+++|  ++|.++.+.
T Consensus         5 yDviIVGsG~aG~v~A~~La~~G--~kVlvLEaG   36 (379)
T d2f5va1           5 YDVVIVGSGPIGCTYARELVGAG--YKVAMFDIG   36 (379)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred             ccEEEECcCHHHHHHHHHHhhCC--CeEEEEecC
Confidence            35899999999999999999999  999999864

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.16  E-value=0.27  Score=45.53  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=28.9

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r  160 (458)
                      .+||.|.|+ |-+|+.++..|.++|  ++|+++|+
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g--~~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCc--CEEEEEEC
Confidence            368999995 999999999999999  99999874

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.92  E-value=0.27  Score=42.16  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=29.4

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      -|.|||+|.-|...|..+++.|  .+|+++++..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G--~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHT--CCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CcEEEEEecC
Confidence            5899999999999999999999  9999998753

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.85  E-value=0.32  Score=44.92  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             hhhcCCCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeC
Q 012720          122 DILERTNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMR  160 (458)
Q Consensus       122 ~~~~~~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r  160 (458)
                      .+++.+++|.|.|+ |-+|+.++..|.+.|  ++|+++||
T Consensus        11 ~~~~~~k~iLVTG~tGfIGs~lv~~L~~~g--~~V~~~d~   48 (341)
T d1sb8a_          11 ELPAQPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDN   48 (341)
T ss_dssp             HHHHSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             hCCCCCCEEEEecCCCHHHHHHHHHHHHCc--CEEEEEEC
Confidence            45555679999995 999999999999999  99999986

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.79  E-value=0.51  Score=42.07  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=33.0

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHH
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQS  167 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~  167 (458)
                      .+++.|-| .+.+|.++|..|++.|  ++|.+.+|+++..+.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G--~~V~~~~~~~~~~~~   44 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREG--ALVALCDLRPEGKEV   44 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSTTHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHH
Confidence            45677778 5899999999999999  999999999876443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.76  E-value=0.24  Score=45.13  Aligned_cols=32  Identities=31%  Similarity=0.559  Sum_probs=30.0

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      -|.|||+|.-|...|..|+++|  .+|+++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G--~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSG--AKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CcEEEEecCC
Confidence            5999999999999999999999  9999999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.55  E-value=0.24  Score=43.31  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=27.8

Q ss_pred             eEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          129 KVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       129 kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      ++.|-| ++.+|.++|..|++.|  ++|.+.+|+++
T Consensus         3 ~alITGas~GIG~aiA~~la~~G--a~V~i~~~~~~   36 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARG--YRVVVLDLRRE   36 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHT--CEEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCcc
Confidence            445556 4899999999999999  99999999764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.55  E-value=0.3  Score=46.14  Aligned_cols=31  Identities=35%  Similarity=0.603  Sum_probs=28.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEe
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLM  159 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~  159 (458)
                      .|||.|.|+ |-+|+.++..|.+.|  |+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g--~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKN--YEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEe
Confidence            389999995 999999999999999  9999997

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=86.54  E-value=0.37  Score=43.39  Aligned_cols=96  Identities=15%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             CCeEEEECcch--HHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEe-CCHHhhc--CCCC
Q 012720          127 TNKVVVLGGGS--FGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIAT-TDAKTAL--LGAD  201 (458)
Q Consensus       127 ~~kI~IIGaG~--mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~-~~~~ea~--~~aD  201 (458)
                      .++|.=+|+|.  +...+|+.+...|   .|+.++++++.++..+++-....      ...++... .|..+..  ..+|
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~~~------~~~nv~~~~~Di~~~~~~~~fD  156 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFY------DIGNVRTSRSDIADFISDQMYD  156 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTS------CCTTEEEECSCTTTCCCSCCEE
T ss_pred             cCEEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhc------CCCceEEEEeeeecccccceee
Confidence            46888888654  4555666655444   89999999988877665421100      01123322 2333332  3479


Q ss_pred             EEEEcCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          202 YCLHAMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       202 iVilaVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      .|++-+|...  ++++.+...+++|-.++...
T Consensus       157 ~V~ld~p~p~--~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         157 AVIADIPDPW--NHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             EEEECCSCGG--GSHHHHHHTEEEEEEEEEEE
T ss_pred             eeeecCCchH--HHHHHHHHhcCCCceEEEEe
Confidence            9999888542  23445556667777776544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.40  E-value=0.3  Score=40.66  Aligned_cols=31  Identities=26%  Similarity=0.411  Sum_probs=28.3

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      .|.|||+|..|...|..+++.|  .+|.++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G--~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKG--IRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT--CCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcC--CeEEEEEEe
Confidence            4899999999999999999999  899999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=86.14  E-value=1.3  Score=39.41  Aligned_cols=40  Identities=13%  Similarity=0.372  Sum_probs=31.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSI  168 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l  168 (458)
                      .+.|.|-|+ +.+|..+|..|++.|  .+|++.+|+.+..+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G--~~vii~~r~~~~~~~~   45 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRN--LKNFVILDRVENPTAL   45 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTC--CSEEEEEESSCCHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCcccHHHH
Confidence            467888886 579999999999999  8888887665444433

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=0.39  Score=42.04  Aligned_cols=100  Identities=9%  Similarity=0.003  Sum_probs=60.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCc------cCCCCC----CCCceEE-eCCHHh
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCR------YFPEQK----LPENVIA-TTDAKT  195 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~------~~~~~~----l~~~i~a-~~~~~e  195 (458)
                      ..||..+|+|.  +..+..|++.|  ++|+.+|.++..++..+++.....      ..+...    ...++.. ..|..+
T Consensus        46 ~~rvLd~GCG~--G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          46 GLRVFFPLCGK--AVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             SCEEEETTCTT--CTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCEEEEeCCCC--cHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            46999999999  36789999999  999999999998887765422100      000000    0112222 123222


Q ss_pred             h----cCCCCEEEEc-----CccccHHHHHHhhhhcCCCCCeEE
Q 012720          196 A----LLGADYCLHA-----MPVQFSSSFLEGISDYVDPGLPFI  230 (458)
Q Consensus       196 a----~~~aDiVila-----Vp~~~v~~vl~~i~~~l~~~~ivV  230 (458)
                      .    ....|+|+.+     ++....+..+..+...++||..++
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~  165 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL  165 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred             ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence            1    2245666643     344556777788888888876543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.95  E-value=0.32  Score=42.32  Aligned_cols=32  Identities=44%  Similarity=0.531  Sum_probs=29.6

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      -|.|||+|.-|...|..+++.|  .+|.++++.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G--~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEG--LKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEeccC
Confidence            5899999999999999999999  9999998754

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.90  E-value=0.49  Score=42.19  Aligned_cols=76  Identities=11%  Similarity=-0.046  Sum_probs=50.6

Q ss_pred             EEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcCc
Q 012720          130 VVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAMP  208 (458)
Q Consensus       130 I~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaVp  208 (458)
                      ..|-|+ +.+|.++|..|++.|  ++|.+.+|+.+..+++++.+.                      ....+|+    +.
T Consensus         3 AlVTGas~GiG~aiA~~la~~G--a~V~i~~r~~~~~~~~~~~~~----------------------~~~~~dv----~~   54 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAG--HTVACHDESFKQKDELEAFAE----------------------TYPQLKP----MS   54 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTT--CEEEECCGGGGSHHHHHHHHH----------------------HCTTSEE----CC
T ss_pred             EEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHhhhC----------------------cEEEecc----CC
Confidence            456675 569999999999999  999999999887777654321                      1123342    12


Q ss_pred             cccHHHHHHhhhhcCCCCCeEEEec
Q 012720          209 VQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       209 ~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ..+++++++++.....+=.++|+..
T Consensus        55 ~~~~~~~~~~~~~~~G~iDiLVnNA   79 (252)
T d1zmta1          55 EQEPAELIEAVTSAYGQVDVLVSND   79 (252)
T ss_dssp             CCSHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECC
Confidence            3456667777665554434677654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.84  E-value=0.29  Score=43.15  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .||.|.|+ |.+|.++|..|+++|  ++|.+.+|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G--~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNG--YTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTT--EEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCch
Confidence            47899995 999999999999999  99999999763

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=85.61  E-value=1.7  Score=36.60  Aligned_cols=43  Identities=14%  Similarity=0.260  Sum_probs=29.9

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCC--CCeEEEEe--CCHHHHHHHHh
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKS--QLKVYMLM--RDPAVCQSINE  170 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~--~~~V~v~~--r~~~~~e~l~~  170 (458)
                      |||+|=|.|++|..+.+.+.+.+.  +.+|...+  .+.+.+..+-+
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlk   48 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTR   48 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhc
Confidence            699999999999999999886432  25666555  34444444443

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=85.56  E-value=0.3  Score=45.61  Aligned_cols=31  Identities=16%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      -+.|||+|.-|+.+|.+|+++|  ++|+++.+.
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAG--IPTQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEeCC
Confidence            4789999999999999999999  999999874

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.55  E-value=2.2  Score=37.64  Aligned_cols=96  Identities=17%  Similarity=0.099  Sum_probs=54.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEEe-----------CCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYMLM-----------RDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAK  194 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~~-----------r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~  194 (458)
                      .++|+|=|.|++|...|..|.+ .|  ..|+.++           .+.+.+..+.+......     ..+ ..+.. +.+
T Consensus        31 g~~vaIqG~GnVG~~~a~~L~~e~G--a~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~-----~~~-~~~~~-~~~  101 (234)
T d1b26a1          31 KATVAVQGFGNVGQFAALLISQELG--SKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVV-----TYP-KGERI-TNE  101 (234)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHHC--CEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCST-----TCS-SCEEE-CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcC--CceEEeecCCCcEEeccccchHHHHHHHHhhccee-----ccc-cceee-ccc
Confidence            5799999999999999999974 58  7776543           22333444443322111     111 12233 344


Q ss_pred             hhcC-CCCEEEEcCcccc-HHHHHHhhhhcCCCCCeEEEeccCC
Q 012720          195 TALL-GADYCLHAMPVQF-SSSFLEGISDYVDPGLPFISLSKGL  236 (458)
Q Consensus       195 ea~~-~aDiVilaVp~~~-v~~vl~~i~~~l~~~~ivV~~snGi  236 (458)
                      +... +||+++-|--... ..+.+..    ++ -.+|+-..|+-
T Consensus       102 ~~~~~~~DI~~PcA~~~~I~~~~a~~----l~-~~~I~e~AN~p  140 (234)
T d1b26a1         102 ELLELDVDILVPAALEGAIHAGNAER----IK-AKAVVEGANGP  140 (234)
T ss_dssp             HHHTSCCSEEEECSCTTCBCHHHHTT----CC-CSEEECCSSSC
T ss_pred             cccccccceeecchhcccccHHHHHH----hh-hceEeecCCCC
Confidence            4443 8999988755433 3333333    33 24666666653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.32  E-value=0.34  Score=41.81  Aligned_cols=32  Identities=16%  Similarity=0.346  Sum_probs=29.8

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ..|.|||+|..|...|..+++.|  .+|++++++
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G--~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC
Confidence            46999999999999999999999  999999875

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.24  E-value=1.7  Score=38.51  Aligned_cols=30  Identities=20%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             CCeEEEECcchHHHHHHHHHHh-cCCCCeEEEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVAN-KKSQLKVYML  158 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~-aG~~~~V~v~  158 (458)
                      .++|+|-|.|++|..+|+.|++ .|  ..|+..
T Consensus        32 g~~v~IqGfGnVG~~~a~~L~~~~G--~kvv~v   62 (239)
T d1gtma1          32 GKTIAIQGYGNAGYYLAKIMSEDFG--MKVVAV   62 (239)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcC--cceeec
Confidence            5799999999999999999976 46  666543

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=85.10  E-value=0.33  Score=42.04  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=28.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAV  164 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~r~~~~  164 (458)
                      |||.|||.|.-|+-+..+|.+.+. +.+...++-+...
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~   38 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQV   38 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHH
Confidence            589999999999999999998873 2344455665543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.81  E-value=0.44  Score=40.82  Aligned_cols=31  Identities=29%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      -+.|||+|..|...|..+++.|  .+|.++++.
T Consensus         5 DviIIG~GpaG~~aA~~aar~G--~kV~vIEk~   35 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELG--ARAAVVESH   35 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CEEEEEecc
Confidence            4889999999999999999999  999999875

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.74  E-value=1.2  Score=39.42  Aligned_cols=82  Identities=16%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             EEEEC-cchHHHHHHHHHHhcCCCCeEEEE-eCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEEcC
Q 012720          130 VVVLG-GGSFGTAMAAHVANKKSQLKVYML-MRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLHAM  207 (458)
Q Consensus       130 I~IIG-aG~mG~~iA~~La~aG~~~~V~v~-~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVilaV  207 (458)
                      |.|-| ++.+|.++|..|+++|  ++|.+. .|+++.++.+.+.-                     ++.  +.+++.+.+
T Consensus         4 ~lITGas~GIG~a~a~~la~~G--a~V~i~~~~~~~~~~~~~~~~---------------------~~~--g~~~~~~~~   58 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAG--CKVLVNYARSAKAAEEVSKQI---------------------EAY--GGQAITFGG   58 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHH---------------------HHH--TCEEEEEEC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHH---------------------HHc--CCcEEEEeC
Confidence            34446 5889999999999999  999885 56776666665421                     110  122333322


Q ss_pred             c---cccHHHHHHhhhhcCCCCCeEEEeccCCC
Q 012720          208 P---VQFSSSFLEGISDYVDPGLPFISLSKGLE  237 (458)
Q Consensus       208 p---~~~v~~vl~~i~~~l~~~~ivV~~snGi~  237 (458)
                      -   ..+++.+++++.....+=.++|+.. |+.
T Consensus        59 Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA-g~~   90 (244)
T d1edoa_          59 DVSKEADVEAMMKTAIDAWGTIDVVVNNA-GIT   90 (244)
T ss_dssp             CTTSHHHHHHHHHHHHHHSSCCSEEEECC-CCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCcccccc-ccc
Confidence            1   3457777887776665545777765 544

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.62  E-value=0.33  Score=44.60  Aligned_cols=33  Identities=33%  Similarity=0.580  Sum_probs=30.3

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .-|.|||+|.-|...|..|+++|  .+|.++.+.+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G--~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTT--CCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence            35999999999999999999999  9999999764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.60  E-value=0.41  Score=38.60  Aligned_cols=35  Identities=20%  Similarity=0.478  Sum_probs=28.9

Q ss_pred             CCCeEEEECcchHHHHHHHHHHh----cCCCCeEEEEeCCH
Q 012720          126 RTNKVVVLGGGSFGTAMAAHVAN----KKSQLKVYMLMRDP  162 (458)
Q Consensus       126 ~~~kI~IIGaG~mG~~iA~~La~----aG~~~~V~v~~r~~  162 (458)
                      ..++|.|||+|..|.-+|..|++    .|  .+|+++.+.+
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g--~~Vt~i~~~~   74 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALG--TEVIQLFPEK   74 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHT--CEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcC--CEEEEecccc
Confidence            35789999999999999998864    46  8999987654

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=84.53  E-value=1.6  Score=35.58  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=50.9

Q ss_pred             CCeEEEECc---chHHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcC
Q 012720          127 TNKVVVLGG---GSFGTAMAAHVANKKSQLKVYMLMRDP-----AVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALL  198 (458)
Q Consensus       127 ~~kI~IIGa---G~mG~~iA~~La~aG~~~~V~v~~r~~-----~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~  198 (458)
                      ..||+|||=   +++...++..+.+-|  .++++.....     +..+.+.+.+.            .+..+.|++++++
T Consensus         4 gl~i~~vGD~~~srV~~Sli~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~~~------------~~~~~~d~~~av~   69 (157)
T d1ml4a2           4 GLKIGLLGDLKYGRTVHSLAEALTFYD--VELYLISPELLRMPRHIVEELREKGM------------KVVETTTLEDVIG   69 (157)
T ss_dssp             SEEEEEESCTTTCHHHHHHHHHGGGSC--EEEEEECCGGGCCCHHHHHHHHHTTC------------CEEEESCTHHHHT
T ss_pred             CCEEEEEcCCccChHHHHHHHHHHhcC--CcEEEEccchhhcchHHHHHHHhhcc------------cceeecCHHHhhc
Confidence            468999996   689999999998888  8999887643     23334443332            3567889999999


Q ss_pred             CCCEEEEcCc
Q 012720          199 GADYCLHAMP  208 (458)
Q Consensus       199 ~aDiVilaVp  208 (458)
                      ++|+|..-.-
T Consensus        70 ~aDvvy~~~~   79 (157)
T d1ml4a2          70 KLDVLYVTRI   79 (157)
T ss_dssp             TCSEEEECCC
T ss_pred             cCcEEEeecc
Confidence            9999887654

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.46  E-value=1.7  Score=35.92  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=47.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCC-----HHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD-----PAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGA  200 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~-----~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~a  200 (458)
                      ..||+++|- .++...++..|.+-|  .+|++....     ++..+.+.+.+..        ....+..+.|++++++++
T Consensus         4 gl~Ia~VGD~~nv~~Sli~~l~~~g--~~v~~~~P~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           4 GVKVVYVGDGNNVAHSLMIAGTKLG--ADVVVATPEGYEPDEKVIKWAEQNAAE--------SGGSFELLHDPVKAVKDA   73 (163)
T ss_dssp             TCEEEEESCCCHHHHHHHHHHHHTT--CEEEEECCTTCCCCHHHHHHHHHHHHH--------HTCEEEEESCHHHHTTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcC--CeEEEecccccCCChHHHHHHHHhhhc--------ccceEEEecCHHHHhhhc
Confidence            479999995 456677777777767  899988653     3334444332210        011356788999999999


Q ss_pred             CEEEEcC
Q 012720          201 DYCLHAM  207 (458)
Q Consensus       201 DiVilaV  207 (458)
                      |+|..-.
T Consensus        74 dviy~~~   80 (163)
T d1pvva2          74 DVIYTDV   80 (163)
T ss_dssp             SEEEECC
T ss_pred             cEEeecc
Confidence            9998754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=84.37  E-value=0.37  Score=45.28  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=28.5

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      -+.|||+|.-|+.+|.+|+++|  ++|.++.+.
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g--~~VlvLEaG   34 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAG--KKVLLLERG   34 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHhhCC--CeEEEEEcc
Confidence            4789999999999999999999  899999765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.33  E-value=0.89  Score=38.35  Aligned_cols=96  Identities=13%  Similarity=0.066  Sum_probs=60.4

Q ss_pred             CCeEEEEC-cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhhcCCCCEEEE
Q 012720          127 TNKVVVLG-GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTALLGADYCLH  205 (458)
Q Consensus       127 ~~kI~IIG-aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea~~~aDiVil  205 (458)
                      ..+|.|.| +|.+|++.-......|  .+|+...+++++.+.+++.|..............+..+     .-+..|+||-
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~G--a~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~-----~~~gvD~vid  104 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPL-----DKQRWAAAVD  104 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHHTTCSEEEECC---------C-----CSCCEEEEEE
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcC--CceEEecCchHHHHHHHhcccceeeecchhHHHHHHHh-----hccCcCEEEE
Confidence            35799999 5999997666666777  99999999998888888876532211000000000000     0246899999


Q ss_pred             cCccccHHHHHHhhhhcCCCCCeEEEec
Q 012720          206 AMPVQFSSSFLEGISDYVDPGLPFISLS  233 (458)
Q Consensus       206 aVp~~~v~~vl~~i~~~l~~~~ivV~~s  233 (458)
                      ++-...+...+..+++    +-.++.+.
T Consensus       105 ~vgg~~~~~~l~~l~~----~Griv~~G  128 (176)
T d1xa0a2         105 PVGGRTLATVLSRMRY----GGAVAVSG  128 (176)
T ss_dssp             CSTTTTHHHHHHTEEE----EEEEEECS
T ss_pred             cCCchhHHHHHHHhCC----CceEEEee
Confidence            9987777766655544    44555554

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.12  E-value=1.4  Score=38.85  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=29.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDPA  163 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~~  163 (458)
                      .+.+.|-|+ +.+|.++|..|+++|  ++|.+.+|+++
T Consensus         5 gKvalVTGas~GIG~aia~~la~~G--a~V~~~~~~~~   40 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEG--ADIAIADLVPA   40 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCch
Confidence            355667786 779999999999999  99999999764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.02  E-value=0.5  Score=40.31  Aligned_cols=32  Identities=25%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .|.|||+|..|...|..+++.|  .+|.++++..
T Consensus         5 DviVIG~GpaGl~aA~~aar~G--~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CEEEEEecCC
Confidence            5899999999999999999999  9999998753

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.53  E-value=0.38  Score=41.78  Aligned_cols=31  Identities=35%  Similarity=0.418  Sum_probs=28.6

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      -|.|||+|.-|...|.++++.|  .+|.+++..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G--~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFD--KKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGC--CCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCC--CeEEEEecc
Confidence            4899999999999999999999  999999854

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.16  E-value=0.33  Score=43.16  Aligned_cols=41  Identities=10%  Similarity=0.303  Sum_probs=33.8

Q ss_pred             CCeEEEECc-chHHHHHHHHHH---hcCCCCeEEEEeCCHHHHHHHH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVA---NKKSQLKVYMLMRDPAVCQSIN  169 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La---~aG~~~~V~v~~r~~~~~e~l~  169 (458)
                      |++|.|-|+ +.+|.++|..|+   +.|  +.|++.+|+++.++.+.
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g--~~V~~~~r~~~~~~~~~   46 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPP--QHLFTTCRNREQAKELE   46 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCC--SEEEEEESCTTSCHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHH
Confidence            567999997 889999999986   456  89999999987666554

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.11  E-value=0.65  Score=41.86  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=32.0

Q ss_pred             CCCeEEEECcc---hHHHHHHHHHHhcCCCCeEEEEeCCHHH
Q 012720          126 RTNKVVVLGGG---SFGTAMAAHVANKKSQLKVYMLMRDPAV  164 (458)
Q Consensus       126 ~~~kI~IIGaG---~mG~~iA~~La~aG~~~~V~v~~r~~~~  164 (458)
                      +.+++.|-|++   .+|.++|..|+++|  .+|.+.+|+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~G--a~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAG--AEILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTT--CEEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCC--CEEEEEeCchhh
Confidence            45789999986   59999999999999  999999988653

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.83  E-value=0.42  Score=40.92  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=27.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCC--eEEEEeCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQL--KVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~--~V~v~~r~  161 (458)
                      .+||.|+|+ |.+|..+...|.++|  +  .|+...|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~--~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEP--TLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCT--TCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCC--CeEEEEEEeCC
Confidence            479999998 999999999999998  6  45555554

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.68  E-value=0.65  Score=42.07  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +||.|.|+ |-+|+.++..|.+.|  ++|+.++|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g--~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKG--YRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCC
Confidence            57999995 999999999999999  9999999864

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=82.51  E-value=0.33  Score=44.15  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=28.7

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      ++||.|.|+ |.+|+.++..|.++|  +.|++.++.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g--~~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRG--DVELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCT--TEEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCc--CEEEEecCc
Confidence            468999995 999999999999999  888877654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.47  E-value=0.58  Score=39.81  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=29.3

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      -|.|||+|.-|...|..+++.|  .+|.++++..
T Consensus         5 DviIIGgGpAGl~aA~~aar~G--~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLG--LKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHT--CCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCC--CeEEEEeccc
Confidence            4899999999999999999999  9999998753

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=82.16  E-value=1  Score=38.84  Aligned_cols=92  Identities=15%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             hcCCCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEEeCCHHhh---cCCC
Q 012720          124 LERTNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIATTDAKTA---LLGA  200 (458)
Q Consensus       124 ~~~~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a~~~~~ea---~~~a  200 (458)
                      .....||.=||+|.  +.++..|++.|  ++|+.+|.+++.++..++++....            ...+.++.   -...
T Consensus        40 ~~~~~~vLDiGcG~--G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~~~~------------~~~~~~~l~~~~~~f  103 (246)
T d2avna1          40 LKNPCRVLDLGGGT--GKWSLFLQERG--FEVVLVDPSKEMLEVAREKGVKNV------------VEAKAEDLPFPSGAF  103 (246)
T ss_dssp             CCSCCEEEEETCTT--CHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTCSCE------------EECCTTSCCSCTTCE
T ss_pred             cCCCCEEEEECCCC--chhcccccccc--eEEEEeeccccccccccccccccc------------ccccccccccccccc
Confidence            33456899999984  44567888888  899999999998888877653211            11122221   1356


Q ss_pred             CEEEEcCc--c--ccHHHHHHhhhhcCCCCCeEEE
Q 012720          201 DYCLHAMP--V--QFSSSFLEGISDYVDPGLPFIS  231 (458)
Q Consensus       201 DiVilaVp--~--~~v~~vl~~i~~~l~~~~ivV~  231 (458)
                      |+|+..-.  .  .....+++++...+++|.+++.
T Consensus       104 D~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         104 EAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA  138 (246)
T ss_dssp             EEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEE
Confidence            88876432  1  2566788888888888776543

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.09  E-value=0.4  Score=41.58  Aligned_cols=36  Identities=14%  Similarity=0.195  Sum_probs=26.9

Q ss_pred             eEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHH
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAV  164 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~r~~~~  164 (458)
                      +|-|||.|..|+-+..+|.+.+. +.+...++-+...
T Consensus         3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~   39 (198)
T d1rq2a1           3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQA   39 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHH
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHH
Confidence            68899999999999999999883 2344444555443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.87  E-value=0.71  Score=42.10  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             CeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +++.|.|+ |-+|+.++..|.+.|  |+|+.++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g--~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKG--YEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCc--CEEEEEECCC
Confidence            57788885 999999999999999  9999999853

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.83  E-value=0.65  Score=41.17  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=28.9

Q ss_pred             eEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          129 KVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       129 kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      .+.|||+|.-|...|..+++.|  .+|.+++++
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G--~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHN--AKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHCC--CeEEEEecC
Confidence            3789999999999999999999  999999975

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=0.71  Score=42.31  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=29.3

Q ss_pred             CeE-EEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          128 NKV-VVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       128 ~kI-~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      +|| .|.|+ |-+|+.++..|.++|  |+|+.++|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g--~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKG--YEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCc--CEEEEEECCC
Confidence            589 58785 999999999999999  9999999864

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.38  E-value=0.61  Score=40.74  Aligned_cols=39  Identities=18%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCC-CCeEEEEeCCHHHH
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKS-QLKVYMLMRDPAVC  165 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~-~~~V~v~~r~~~~~  165 (458)
                      ..||.|||.|.-|+-++.+|.+.|. +.+...++-+...+
T Consensus        15 ~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L   54 (209)
T d2vapa1          15 KAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQL   54 (209)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHH
T ss_pred             CCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHH
Confidence            5799999999999999999999883 23444556665433

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.94  E-value=0.53  Score=44.76  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             CeEEEECcchHHHHHHHHHHh------cCCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVAN------KKSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~------aG~~~~V~v~~r~~~  163 (458)
                      --|.|||+|.-|+..|..|++      +|  ++|.++++..+
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~G--l~VlllEK~~~   72 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAH   72 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCC--CEEEEEcCCCC
Confidence            369999999999999999997      67  99999998754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.62  E-value=0.56  Score=42.88  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=30.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhc--CCCCeEEEEeCCHH
Q 012720          128 NKVVVLGGGSFGTAMAAHVANK--KSQLKVYMLMRDPA  163 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~a--G~~~~V~v~~r~~~  163 (458)
                      .+|.|||+|.-|...|..|+++  |  ++|+++++...
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~--~~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPD--LKVCIIESSVA   86 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTT--SCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCC--CeEEEEEcCCC
Confidence            4699999999999999999965  6  99999998753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.59  E-value=0.72  Score=41.73  Aligned_cols=113  Identities=13%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CCeEEEEC--cchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhh---cCCC
Q 012720          127 TNKVVVLG--GGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTA---LLGA  200 (458)
Q Consensus       127 ~~kI~IIG--aG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea---~~~a  200 (458)
                      .++|.=+|  .|.+...+|..+...|   .|+.++.+++.++..+++-...  ..  ....++.. ..|..+.   -...
T Consensus        97 G~~VLE~G~GsG~lt~~La~~vgp~G---~V~~~d~~~~~~~~Ar~n~~~~--~~--~~~~nv~~~~~d~~~~~~~~~~f  169 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGC--YG--QPPDNWRLVVSDLADSELPDGSV  169 (264)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHH--HT--SCCTTEEEECSCGGGCCCCTTCE
T ss_pred             CCEEEecCcCCcHHHHHHHHhhCCCc---EEEEecCCHHHHHHHHHhhhhh--cc--CCCceEEEEecccccccccCCCc
Confidence            36776666  5777778888887666   7999999998887766531100  00  01122332 2233321   1357


Q ss_pred             CEEEEcCccccHHHHHHhhhhcCCCCCeEEEeccCCCcchhhhHHHHHHH
Q 012720          201 DYCLHAMPVQFSSSFLEGISDYVDPGLPFISLSKGLELNTLRMMSQIIPQ  250 (458)
Q Consensus       201 DiVilaVp~~~v~~vl~~i~~~l~~~~ivV~~snGi~~~t~~~l~e~l~~  250 (458)
                      |.||+-+|...  ++++.+...+++|..++.....+.  +.....+.+++
T Consensus       170 DaV~ldlp~P~--~~l~~~~~~LkpGG~lv~~~P~i~--Qv~~~~~~l~~  215 (264)
T d1i9ga_         170 DRAVLDMLAPW--EVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRA  215 (264)
T ss_dssp             EEEEEESSCGG--GGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHH
T ss_pred             ceEEEecCCHH--HHHHHHHhccCCCCEEEEEeCccC--hHHHHHHHHHH
Confidence            99999998642  234445556667777766553333  23344455543

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.36  E-value=0.97  Score=33.92  Aligned_cols=32  Identities=22%  Similarity=0.274  Sum_probs=28.1

Q ss_pred             CeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCC
Q 012720          128 NKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRD  161 (458)
Q Consensus       128 ~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~  161 (458)
                      |||.|||.|.=-.++|..|.+..  ++|+++--+
T Consensus         1 MkVLviGsGgREHAia~~l~~s~--~~v~~~pGN   32 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQG--YEVHFYPGN   32 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHhcCC--CeEEEecCC
Confidence            79999999999999999999887  888877444

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.35  E-value=0.83  Score=40.06  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .++|.|.|+ |.+|.++|..|+++|  ++|.+.++.+
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G--~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARN--WWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence            478999997 789999999999999  9999998765

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.14  E-value=1.6  Score=37.92  Aligned_cols=92  Identities=16%  Similarity=0.158  Sum_probs=58.1

Q ss_pred             CCeEEEECcchHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhhcCCCccCCCCCCCCceEE-eCCHHhh--cCCCCEE
Q 012720          127 TNKVVVLGGGSFGTAMAAHVANKKSQLKVYMLMRDPAVCQSINEKHCNCRYFPEQKLPENVIA-TTDAKTA--LLGADYC  203 (458)
Q Consensus       127 ~~kI~IIGaG~mG~~iA~~La~aG~~~~V~v~~r~~~~~e~l~~~g~~~~~~~~~~l~~~i~a-~~~~~ea--~~~aDiV  203 (458)
                      .++|.=||+|. | .++..|++.|  .+|+.+|.+++.++..+++....      .+  ++.+ ..|..+.  -+..|+|
T Consensus        42 ~~~iLDiGcGt-G-~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~------~~--~i~~~~~d~~~l~~~~~fD~I  109 (251)
T d1wzna1          42 VRRVLDLACGT-G-IPTLELAERG--YEVVGLDLHEEMLRVARRKAKER------NL--KIEFLQGDVLEIAFKNEFDAV  109 (251)
T ss_dssp             CCEEEEETCTT-C-HHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT------TC--CCEEEESCGGGCCCCSCEEEE
T ss_pred             CCEEEEeCCCC-C-ccchhhcccc--eEEEEEeeccccccccccccccc------cc--cchheehhhhhcccccccchH
Confidence            35799999997 4 3567788998  89999999998777665532100      00  1111 1233321  1356888


Q ss_pred             EEcCcc------ccHHHHHHhhhhcCCCCCeEE
Q 012720          204 LHAMPV------QFSSSFLEGISDYVDPGLPFI  230 (458)
Q Consensus       204 ilaVp~------~~v~~vl~~i~~~l~~~~ivV  230 (458)
                      +++--+      .....+++.+...++||.+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence            875322      235577888888888876554

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.14  E-value=4.2  Score=36.85  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             CCeEEEECc-chHHHHHHHHHHhcCCCCeEEEEeCCH
Q 012720          127 TNKVVVLGG-GSFGTAMAAHVANKKSQLKVYMLMRDP  162 (458)
Q Consensus       127 ~~kI~IIGa-G~mG~~iA~~La~aG~~~~V~v~~r~~  162 (458)
                      .+.+.|-|+ +.+|.++|..|+++|  ++|.+.+|+.
T Consensus         7 gKvalITGas~GIG~aiA~~la~~G--a~Vvi~d~~~   41 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERG--ALVVVNDLGG   41 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTT--CEEEEECCCB
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcC--CEEEEEeCCc
Confidence            345666685 789999999999999  9999987754