Citrus Sinensis ID: 012756

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFSTEKESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPRINGSHPC
ccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccc
ccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccccccccccEEEEcccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccc
MMKCIALGAVEFLrkplsedklRNLWQHVVHKAFNaggsalsdslkpVKESVVSMLHLKLengeskneksenteyvlvpqqsdneqsvpndkypapstpqlkqggrllddidcqdntnfstekesaeqdgeskfvettcgnsiaegtlqedkpqrpretivkeehdptngsktecnmlplpyekdnlkgsncvienpskasglqnscgnkanrkkmkvdwtpeLHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHrrhilpkeddrkwpharDQMLRnyyphkpimafppyhsnhlvptgpvypvwgapsnhlaavqmwappgyppwqqaeswnwkpypgmpadawgcpvmplpngpyssfpqgasgyhnsgvddnsyampqnsvdlhpaEEVIDKVVKEAiskpwlplplglkppsaDSVLAELSRqgistippringshpc
MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAggsalsdslKPVKESVVSMLHLKlengeskneksenTEYVLVPQQsdneqsvpndkyPAPSTPQLKQGGRLLDDIDCQDNTNFStekesaeqdgeskfVETTCGNsiaegtlqedkpqrpretivkeehdptngsktecnMLPLPYEKDNLKGSNCVIEnpskasglqnscgnkANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHrrhilpkeddrkwphaRDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSrqgistippringshpc
MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHlklengeskneksenteYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFSTEKESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISkpwlplplglkppSADSVLAELSRQGISTIPPRINGSHPC
***CIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG***********************************************************************************************************************************************************************************VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILP*****KWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPL**************************************EVIDKVVKEAISKPWLPLPLG*******************************
**KC*ALGAVEFLRKPLSEDKLRNLWQHVV********************************************************************************************************************************************************************************************DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR*******************************************************************************************************************************************VIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGIS************
MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLEN**********TEYVLVPQQ**************PSTPQLKQGGRLLDDIDCQDNTNF***************VETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPRINGSHPC
MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG***********************************TEYVLVPQ**********DKYPAPSTPQLKQGGRLLDDIDCQDNT************************************************************************************************KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED***************YPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHN******SY*MPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPP********
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MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFSTEKESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPRINGSHPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query457 2.2.26 [Sep-21-2011]
Q6LA43535 Two-component response re yes no 0.862 0.736 0.504 3e-90
Q9FFH0386 Transcription activator G no no 0.446 0.528 0.413 6e-31
Q9SIV3420 Transcription activator G no no 0.538 0.585 0.381 1e-29
Q5Z5I4455 Probable transcription fa yes no 0.498 0.501 0.357 8e-25
Q5NAN5539 Probable transcription fa no no 0.150 0.128 0.695 1e-24
Q9FGT7 635 Two-component response re no no 0.262 0.188 0.382 5e-18
Q940D0 690 Two-component response re no no 0.142 0.094 0.6 9e-16
Q9ZWJ9 664 Two-component response re no no 0.131 0.090 0.633 1e-15
P62598 596 Two-component response re no no 0.133 0.102 0.622 2e-15
Q8L9Y3382 Two-component response re no no 0.137 0.164 0.571 3e-15
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2 Back     alignment and function desciption
 Score =  332 bits (852), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 243/482 (50%), Positives = 296/482 (61%), Gaps = 88/482 (18%)

Query: 2   MKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKLE 61
           MKCIALGAVEFL+KPLS +KL+N+WQHVVHKAFN GGS +S SLKPVKESVVSMLHL+  
Sbjct: 111 MKCIALGAVEFLQKPLSPEKLKNIWQHVVHKAFNDGGSNVSISLKPVKESVVSMLHLE-- 168

Query: 62  NGESKNEKSENTEYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFS- 120
                      T+  +             +K PAPSTPQLKQ  RLLD  DCQ+N NFS 
Sbjct: 169 -----------TDMTI------------EEKDPAPSTPQLKQDSRLLDG-DCQENINFSM 204

Query: 121 ------TEKESAE--QD-GESKFVETTCGNSIAEGTLQEDKP--QRPRETIVKEEHDPTN 169
                 TEK++ E  QD GESK V+TT         L +DK   +  R    KEE   T 
Sbjct: 205 ENVNSSTEKDNMEDHQDIGESKSVDTT------NRKLDDDKVVVKEERGDSEKEEEGETG 258

Query: 170 GSKTE-CNMLPLPYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKF 228
              +E  + + +  ++D  K  N       K+SG++N  GNK +RKK  VDWTPELHKKF
Sbjct: 259 DLISEKTDSVDIHKKEDETKPIN-------KSSGIKNVSGNKTSRKK--VDWTPELHKKF 309

Query: 229 VQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARD 287
           VQAVEQLGVDQAIPSRILELMKV  LTRHNVASHLQK+R HR++ILPK+D + +W  +R+
Sbjct: 310 VQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNILPKDDHNHRWIQSRE 369

Query: 288 QML---RNY----YPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPP 340
                 RNY      H+P+MA+P +    + P G + P+W  P   +         G PP
Sbjct: 370 NHRPNQRNYNVFQQQHRPVMAYPVWGLPGVYPPGAIPPLWPPPLQSI---------GQPP 420

Query: 341 WQQAESWNWK-PYPGMPADAWGCPVMPLPNGPY---SSFPQGASGYHNSGVDDNSYAMPQ 396
                 W+WK PYP +  +AWGCPV P   G Y   S+   G   Y N G +     MP 
Sbjct: 421 -----PWHWKPPYPTVSGNAWGCPVGPPVTGSYITPSNTTAGGFQYPN-GAETGFKIMPA 474

Query: 397 NSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR---ING 453
           +     P EE++D+VVKEAISKPWLPLPLGLKPPSA+SVLAEL+RQGIS +P     ING
Sbjct: 475 S----QPDEEMLDQVVKEAISKPWLPLPLGLKPPSAESVLAELTRQGISAVPSSSCLING 530

Query: 454 SH 455
           SH
Sbjct: 531 SH 532
Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2 Back     alignment and function description
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica GN=GLK1 PE=2 SV=1 Back     alignment and function description
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica GN=GLK2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2 Back     alignment and function description
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1 Back     alignment and function description
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2 Back     alignment and function description
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
225427316557 PREDICTED: two-component response regula 0.993 0.815 0.711 0.0
147794999 563 hypothetical protein VITISV_001044 [Viti 0.989 0.802 0.701 1e-180
224126555549 predicted protein [Populus trichocarpa] 0.975 0.812 0.662 1e-168
419193836 560 APRR2-like protein [Solanum lycopersicum 0.989 0.807 0.592 1e-146
449513573 559 PREDICTED: LOW QUALITY PROTEIN: two-comp 0.986 0.806 0.635 1e-146
449464910 560 PREDICTED: two-component response regula 0.986 0.805 0.634 1e-144
356540587 570 PREDICTED: two-component response regula 0.984 0.789 0.612 1e-144
356565422 576 PREDICTED: two-component response regula 0.982 0.779 0.610 1e-140
357482307543 Two-component response regulator-like pr 0.956 0.804 0.583 1e-140
356495556533 PREDICTED: two-component response regula 0.916 0.786 0.613 1e-140
>gi|225427316|ref|XP_002279150.1| PREDICTED: two-component response regulator-like APRR2 [Vitis vinifera] gi|297742160|emb|CBI33947.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/457 (71%), Positives = 363/457 (79%), Gaps = 3/457 (0%)

Query: 1   MMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLKL 60
           MMKCIALGAVEFLRKPLSEDKLRN+WQHVVHKAFNAGGS L +SLKPVKESV SML L++
Sbjct: 102 MMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGGSVLPESLKPVKESVASMLQLQM 161

Query: 61  ENGESKNEKSENTEYVLVPQQSDNEQSVPNDKYPAPSTPQLKQGGRLLDDIDCQDNTNFS 120
           EN E +NE S  T  V    ++D+ QS   DKYPAPSTPQLKQGGR LDD DC D TN S
Sbjct: 162 ENEEPRNESSAETLNVSNVHENDHMQSAGTDKYPAPSTPQLKQGGRSLDDGDCLDQTNCS 221

Query: 121 TEKESAEQDGESKFVETTCGNSIAEGTLQEDKPQRPRETIVKEEHDPTNGSKTECNMLPL 180
           TEKES EQDGESK VETTCG S+AE T Q   PQ   E+++KEE D  +G K+E NM P 
Sbjct: 222 TEKESGEQDGESKSVETTCGTSVAEVTAQVSPPQGLGESVIKEEDDSADGCKSESNMSPH 281

Query: 181 PYEKDNLKGSNCVIENPSKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQA 240
           P  KD+L        NP KASG+ + CG +ANRKKMKVDWTPELHKKFVQAVEQLGVDQA
Sbjct: 282 PQNKDSLSEFGGDARNPRKASGVHSPCGTRANRKKMKVDWTPELHKKFVQAVEQLGVDQA 341

Query: 241 IPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRKWPHARDQMLRNYYPHKPIM 300
           IPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDR+WPH RD M RNYYP KP+M
Sbjct: 342 IPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKEDDRRWPHQRDPMQRNYYPQKPVM 401

Query: 301 AFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKPYPGMPADAW 360
           AFPPYHS+H +P   +YPVWG PS+H A  QMW+ PGY  WQ AESW WKPYPGM ADAW
Sbjct: 402 AFPPYHSSHTLPAAQLYPVWGQPSSHPA--QMWSTPGYHTWQPAESWIWKPYPGMNADAW 459

Query: 361 GCPVMPLPNGPYSSFPQGASGY-HNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISKP 419
           GCPVM   + P SSFPQ  SG+ HN+G    +  +PQ+ +DL+PAEE+ID+VVKEAISKP
Sbjct: 460 GCPVMTPTHTPCSSFPQNPSGFDHNNGSGIYNTGIPQSPIDLYPAEELIDRVVKEAISKP 519

Query: 420 WLPLPLGLKPPSADSVLAELSRQGISTIPPRINGSHP 456
           W+PLPLGLKPP+ +SVLAELSRQGISTIPP IN   P
Sbjct: 520 WMPLPLGLKPPATESVLAELSRQGISTIPPHINTPRP 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147794999|emb|CAN71929.1| hypothetical protein VITISV_001044 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126555|ref|XP_002329583.1| predicted protein [Populus trichocarpa] gi|222870292|gb|EEF07423.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|419193836|gb|AFX68729.1| APRR2-like protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449513573|ref|XP_004164360.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator-like APRR2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449464910|ref|XP_004150172.1| PREDICTED: two-component response regulator-like APRR2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356540587|ref|XP_003538769.1| PREDICTED: two-component response regulator-like APRR2-like [Glycine max] Back     alignment and taxonomy information
>gi|356565422|ref|XP_003550939.1| PREDICTED: two-component response regulator-like APRR2-like [Glycine max] Back     alignment and taxonomy information
>gi|357482307|ref|XP_003611439.1| Two-component response regulator-like protein [Medicago truncatula] gi|355512774|gb|AES94397.1| Two-component response regulator-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356495556|ref|XP_003516642.1| PREDICTED: two-component response regulator-like APRR2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
TAIR|locus:2141020535 APRR2 [Arabidopsis thaliana (t 0.722 0.616 0.463 3.4e-90
TAIR|locus:2167639386 GLK2 "AT5G44190" [Arabidopsis 0.494 0.585 0.418 3.9e-37
UNIPROTKB|Q5Z5I4455 GLK1 "Probable transcription f 0.428 0.430 0.376 4e-27
TAIR|locus:2130095 664 RR2 "response regulator 2" [Ar 0.142 0.097 0.584 9.4e-18
TAIR|locus:2093668 690 RR1 "response regulator 1" [Ar 0.137 0.091 0.619 9.8e-18
TAIR|locus:2040194 596 RR12 "response regulator 12" [ 0.133 0.102 0.622 1.5e-17
TAIR|locus:2065398382 RR14 "response regulator 14" [ 0.135 0.162 0.580 2.6e-17
TAIR|locus:2116587 552 RR10 "response regulator 10" [ 0.280 0.231 0.363 6.8e-17
TAIR|locus:2148348298 BOA "AT5G59570" [Arabidopsis t 0.203 0.312 0.44 8.3e-17
UNIPROTKB|Q7Y0W3341 Q7Y0W3 "Two-component response 0.245 0.328 0.351 2e-16
TAIR|locus:2141020 APRR2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 676 (243.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
 Identities = 182/393 (46%), Positives = 228/393 (58%)

Query:    91 DKYPAPSTPQLKQGGRLLDDIDCQDNTNFS-------TEKESAE--QD-GESKFVETTCG 140
             +K PAPSTPQLKQ  RLLD  DCQ+N NFS       TEK++ E  QD GESK V+TT  
Sbjct:   175 EKDPAPSTPQLKQDSRLLDG-DCQENINFSMENVNSSTEKDNMEDHQDIGESKSVDTT-- 231

Query:   141 NSIAEGTLQEDKP--QRPRETIVKEEHDPTNGSKTE-CNMLPLPYEKDNLKGSNCVIENP 197
                    L +DK   +  R    KEE   T    +E  + + +  ++D  K  N      
Sbjct:   232 ----NRKLDDDKVVVKEERGDSEKEEEGETGDLISEKTDSVDIHKKEDETKPIN------ 281

Query:   198 SKASGLQNSCGNKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRH 257
              K+SG++N  GNK +RKK  VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKV  LTRH
Sbjct:   282 -KSSGIKNVSGNKTSRKK--VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRH 338

Query:   258 NVASHLQKYRMHRRHILPKED-DRKWPHARDQML---RNY----YPHKPIMAFPPYHSNH 309
             NVASHLQK+R HR++ILPK+D + +W  +R+      RNY      H+P+MA+P +    
Sbjct:   339 NVASHLQKFRQHRKNILPKDDHNHRWIQSRENHRPNQRNYNVFQQQHRPVMAYPVWGLPG 398

Query:   310 LVPTGPVYPVWGAPSNHLAAVQMWAPPGYPPWQQAESWNWKP-YPGMPADAWGCPVMPLP 368
             + P G + P+W  P   L ++      G PP      W+WKP YP +  +AWGCPV P  
Sbjct:   399 VYPPGAIPPLWPPP---LQSI------GQPP-----PWHWKPPYPTVSGNAWGCPVGPPV 444

Query:   369 NGPY---SSFPQGASGYHNSGVDDNSYAMPQNSVDLHPAEEVIDKVVKEAISXXXXXXXX 425
              G Y   S+   G   Y N G +     MP +     P EE++D+VVKEAIS        
Sbjct:   445 TGSYITPSNTTAGGFQYPN-GAETGFKIMPASQ----PDEEMLDQVVKEAISKPWLPLPL 499

Query:   426 XXXXXSADSVLAELSRQGISTIPPR---INGSH 455
                  SA+SVLAEL+RQGIS +P     INGSH
Sbjct:   500 GLKPPSAESVLAELTRQGISAVPSSSCLINGSH 532
GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS
GO:0000160 "phosphorelay signal transduction system" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0007623 "circadian rhythm" evidence=RCA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA
TAIR|locus:2167639 GLK2 "AT5G44190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5Z5I4 GLK1 "Probable transcription factor GLK1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2130095 RR2 "response regulator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093668 RR1 "response regulator 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040194 RR12 "response regulator 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065398 RR14 "response regulator 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116587 RR10 "response regulator 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148348 BOA "AT5G59570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Y0W3 Q7Y0W3 "Two-component response regulator EHD1" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6LA43APRR2_ARATHNo assigned EC number0.50410.86210.7364yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
PLN03162526 PLN03162, PLN03162, golden-2 like transcription fa 7e-46
TIGR0155757 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai 3e-22
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-06
>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional Back     alignment and domain information 
 Score =  166 bits (421), Expect = 7e-46
 Identities = 114/299 (38%), Positives = 151/299 (50%), Gaps = 55/299 (18%)

Query: 206 SCGNKA-NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQ 264
           SC N A  +KK KVDWTPELH++FV AVEQLGV++A PSRILELM V+ LTRHN+ASHLQ
Sbjct: 225 SCKNAAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQ 284

Query: 265 KYRMHRRHILPKE-DDRKWPHAR--DQM------LRNYYP-----HKP--------IMAF 302
           KYR HRRH+  +E +   W H R   Q        R+  P     H P         MA 
Sbjct: 285 KYRSHRRHLAAREAEAASWTHRRAYTQAPWPRSSRRDGLPYLVPIHTPHIQPRPSMAMAM 344

Query: 303 PPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPGY--PPWQQAESWNWKPYPGMPADAW 360
            P       P      VWG P+   + V MW  P    P + QA   ++  +P    DA+
Sbjct: 345 QPQLQTPHHPISTPLKVWGYPTVDHSNVHMWQQPAVATPSYWQAADGSYWQHPATGYDAF 404

Query: 361 ---GCPVMPLPNGPYSS-----------FPQGASGYHNSGVDDNSYAMPQN--------- 397
               C   P+   P  +           FP  +  Y +  +  + Y   Q+         
Sbjct: 405 SARACYPHPMQRVPLGTTHAGLPIMAPGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAA 464

Query: 398 -------SVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPP 449
                   ++ H ++EV+D  + EA++ PW P PLGLKPPS + V+AEL RQGI+T+PP
Sbjct: 465 GVAACSKPIETHLSKEVLDAAIGEALANPWTPPPLGLKPPSMEGVIAELQRQGINTVPP 523

Length = 526
>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 457
PLN03162526 golden-2 like transcription factor; Provisional 100.0
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 99.82
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.27
PLN03029222 type-a response regulator protein; Provisional 95.67
smart0042668 TEA TEA domain. 92.67
COG4566202 TtrR Response regulator [Signal transduction mecha 92.61
COG4565224 CitB Response regulator of citrate/malate metaboli 90.57
COG0745229 OmpR Response regulators consisting of a CheY-like 90.2
COG4753475 Response regulator containing CheY-like receiver d 89.26
COG4567182 Response regulator consisting of a CheY-like recei 87.62
PRK09581457 pleD response regulator PleD; Reviewed 87.3
PRK13856241 two-component response regulator VirG; Provisional 85.62
COG2204464 AtoC Response regulator containing CheY-like recei 84.95
PRK10766221 DNA-binding transcriptional regulator TorR; Provis 84.49
PRK11173237 two-component response regulator; Provisional 84.07
PRK10643222 DNA-binding transcriptional regulator BasR; Provis 83.97
TIGR03787227 marine_sort_RR proteobacterial dedicated sortase s 82.46
PRK10529225 DNA-binding transcriptional activator KdpE; Provis 80.82
PRK10336219 DNA-binding transcriptional regulator QseB; Provis 80.35
>PLN03162 golden-2 like transcription factor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-70  Score=549.29  Aligned_cols=239  Identities=44%  Similarity=0.745  Sum_probs=186.3

Q ss_pred             CcccCCCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhcccCCccc-cccCchhhh
Q 012756          209 NKANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARD  287 (457)
Q Consensus       209 ~~~~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~l~~~~-~~~w~~~R~  287 (457)
                      ...++||+||+||+|||++||+||++||+++||||+||++|+|+||||+||||||||||+++++++.+++ +.+|+++|.
T Consensus       229 ~~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~  308 (526)
T PLN03162        229 AAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRA  308 (526)
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhh
Confidence            4467899999999999999999999999999999999999999999999999999999999999999998 589999887


Q ss_pred             hhhc-----ccCCC----CCCcCCCCC-------------CCCCCCCCCCCCcccCCCCCCCccccccCCCC---CCCCC
Q 012756          288 QMLR-----NYYPH----KPIMAFPPY-------------HSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPG---YPPWQ  342 (457)
Q Consensus       288 ~~~~-----n~~~~----~p~~~f~p~-------------~~~h~~p~~~~~~vwG~p~~~~~~~~~w~~~~---~~~w~  342 (457)
                      ....     ++...    .| |+||+.             .+.|+.|...++||||||+++++.||||++..   .++|+
T Consensus       309 ~~~~P~~rs~~~~g~p~~~p-igfP~~~P~P~~~~~~~P~~~~~Hhpf~rPLhVWGhPtvd~s~v~mWp~h~~~~p~pW~  387 (526)
T PLN03162        309 YTQAPWPRSSRRDGLPYLVP-IHTPHIQPRPSMAMAMQPQLQTPHHPISTPLKVWGYPTVDHSNVHMWQQPAVATPSYWQ  387 (526)
T ss_pred             hccCCcccCCCCCCCccccc-cCCCCCCCCCCccCCCCCCcccccccccccceeccCCCCCCcccccccccccCCCCCCC
Confidence            4431     22211    12 455532             22344455557899999999999999999743   56799


Q ss_pred             CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCC---CCCCC------------------C--
Q 012756          343 QAE--SWNWKPYPGMPADAWGCPVMPLPNGPYSSF------PQGASGYHNS---GVDDN------------------S--  391 (457)
Q Consensus       343 p~~--~w~~~py~~~~~~awG~p~~p~~~~p~~~~------p~~~~g~~~~---~~~~~------------------~--  391 (457)
                      +.+  ||| |||++..|-. |+||||.|...+...      |+-.|+|..+   |+.|.                  .  
T Consensus       388 ~~Dp~fW~-h~~~~~~a~~-gtpc~p~pm~Rfp~ppv~~G~p~~~P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~  465 (526)
T PLN03162        388 AADGSYWQ-HPATGYDAFS-ARACYPHPMQRVPLGTTHAGLPIMAPGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAG  465 (526)
T ss_pred             CCCcchhh-cccccCcccc-CCcccCchhhhCCCCCCCCCCccccCCCCchhhcccccchhhcccccccccccccccccc
Confidence            976  664 4898765433 999999775321111      2222233221   11110                  1  


Q ss_pred             CCCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCCCCCCCCChhHHHHHHHHcCCCCCCCC
Q 012756          392 YAMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR  450 (457)
Q Consensus       392 ~~~p~~~~d~hPs~E~iDaai~dvl~kPwlPLPlGLKpPs~dsVm~EL~rQGi~~iPp~  450 (457)
                      ....++++++|||||+|||||||||+||||||||||||||+||||+|||||||++|||+
T Consensus       466 ~~~~~~~~~~hpSkEsiDAAIgdvLskPWlPlPLGLKpPSldsVm~ELqRQGi~~vpp~  524 (526)
T PLN03162        466 VAACSKPIETHLSKEVLDAAIGEALANPWTPPPLGLKPPSMEGVIAELQRQGINTVPPS  524 (526)
T ss_pred             hhhcccccccCccHHHHHHHHHHHhhCCCCCCCcCCCCccHHHHHHHHHHcccCCCCCC
Confidence            11245899999999999999999999999999999999999999999999999999996

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PLN03029 type-a response regulator protein; Provisional Back     alignment and domain information
>smart00426 TEA TEA domain Back     alignment and domain information
>COG4566 TtrR Response regulator [Signal transduction mechanisms] Back     alignment and domain information
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] Back     alignment and domain information
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>PRK09581 pleD response regulator PleD; Reviewed Back     alignment and domain information
>PRK13856 two-component response regulator VirG; Provisional Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional Back     alignment and domain information
>PRK11173 two-component response regulator; Provisional Back     alignment and domain information
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional Back     alignment and domain information
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator Back     alignment and domain information
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional Back     alignment and domain information
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1irz_A64 Solution Structure Of Arr10-B Belonging To The Garp 7e-14
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64 Back     alignment and structure 
Iteration: 1

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 48/61 (78%)
Query: 213 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 272
           +KK +V WT ELH KF+ AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+  + 
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62
Query: 273 I 273
           +
Sbjct: 63  V 63

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 1e-04
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64 Back     alignment and structure
 Score = 97.7 bits (243), Expect = 2e-25
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 213 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 272
           +KK +V WT ELH KF+ AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+  + 
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62

Query: 273 I 273
           +
Sbjct: 63  V 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 99.95
3h5i_A140 Response regulator/sensory box protein/ggdef domai 95.39
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 95.07
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 94.38
3n53_A140 Response regulator receiver modulated diguanylate; 94.17
2qv0_A143 Protein MRKE; structural genomics, transcription, 94.07
3jte_A143 Response regulator receiver protein; structural ge 93.49
2qzj_A136 Two-component response regulator; 11017X, PSI-II, 93.08
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 92.95
3gt7_A154 Sensor protein; structural genomics, signal receiv 92.7
3cu5_A141 Two component transcriptional regulator, ARAC FAM; 92.43
2zay_A147 Response regulator receiver protein; structural ge 92.3
1mvo_A136 PHOP response regulator; phosphate regulon, transc 92.3
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 92.28
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 92.18
3r0j_A250 Possible two component system response transcript 91.33
3cfy_A137 Putative LUXO repressor protein; structural genomi 91.29
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 91.22
2qxy_A142 Response regulator; regulation of transcription, N 91.07
3f6c_A134 Positive transcription regulator EVGA; structural 90.59
1ys7_A233 Transcriptional regulatory protein PRRA; response 90.42
1s8n_A205 Putative antiterminator; RV1626, structural genomi 90.35
1yio_A208 Response regulatory protein; transcription regulat 90.31
2hzd_A82 Transcriptional enhancer factor TEF-1; DNA-binding 90.13
3rqi_A184 Response regulator protein; structural genomics, s 90.06
3kcn_A151 Adenylate cyclase homolog; SGX, PSI 2, structural 89.95
2qsj_A154 DNA-binding response regulator, LUXR family; struc 89.54
1qo0_D196 AMIR; binding protein, gene regulator, receptor; 2 89.52
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 89.29
2rjn_A154 Response regulator receiver:metal-dependent phosph 89.01
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 88.31
1kgs_A225 DRRD, DNA binding response regulator D; DNA-bindin 88.19
1a04_A215 Nitrate/nitrite response regulator protein NARL; s 88.14
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 88.06
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 87.86
3cz5_A153 Two-component response regulator, LUXR family; str 87.31
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 86.3
1p2f_A220 Response regulator; DRRB, OMPR/PHOB, transcription 86.21
3q9s_A249 DNA-binding response regulator; DNA binding protei 86.18
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 85.81
3eq2_A394 Probable two-component response regulator; adaptor 85.66
2oqr_A230 Sensory transduction protein REGX3; response regul 85.6
1w25_A459 Stalked-cell differentiation controlling protein; 84.38
2jk1_A139 HUPR, hydrogenase transcriptional regulatory prote 84.08
3klo_A225 Transcriptional regulator VPST; REC domain, HTH do 83.8
3c3w_A225 Two component transcriptional regulatory protein; 83.7
3sy8_A400 ROCR; TIM barrel phosphodiesterase-A, transcriptio 83.64
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 83.55
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 83.5
3c3m_A138 Response regulator receiver protein; structural ge 83.38
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 83.16
3bre_A358 Probable two-component response regulator; protein 82.94
2hqr_A223 Putative transcriptional regulator; phosporylation 82.11
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
Probab=99.95  E-value=8.1e-29  Score=195.87  Aligned_cols=62  Identities=55%  Similarity=0.923  Sum_probs=59.7

Q ss_pred             cCCCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhccc
Q 012756          212 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI  273 (457)
Q Consensus       212 ~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~  273 (457)
                      +.+|+||+||+|||++||+||++||.++||||.||++|+|+|||++||||||||||++++++
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~   63 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence            46899999999999999999999999999999999999999999999999999999999875
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0 Back     alignment and structure
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Back     alignment and structure
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Back     alignment and structure
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Back     alignment and structure
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Back     alignment and structure
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Back     alignment and structure
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Back     alignment and structure
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens} Back     alignment and structure
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Back     alignment and structure
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Back     alignment and structure
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Back     alignment and structure
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Back     alignment and structure
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Back     alignment and structure
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Back     alignment and structure
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Back     alignment and structure
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Back     alignment and structure
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Back     alignment and structure
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 457
d1irza_64 a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th 1e-23
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.5 bits (227), Expect = 1e-23
 Identities = 34/61 (55%), Positives = 48/61 (78%)

Query: 213 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 272
           +KK +V WT ELH KF+ AV+ LGV++A+P +IL+LM V+ LTR NVASHLQK+R+  + 
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62

Query: 273 I 273
           +
Sbjct: 63  V 63

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 99.93
d1qkka_140 Transcriptional regulatory protein DctD, receiver 96.24
d1w25a1139 Response regulator PleD, receiver domain {Caulobac 96.21
d1w25a2153 Response regulator PleD, receiver domain {Caulobac 95.77
d1ny5a1137 Transcriptional activator sigm54 (NtrC1), N-termin 95.75
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 95.08
d1qo0d_189 Positive regulator of the amidase operon AmiR {Pse 94.97
d1s8na_190 Probable two-component system transcriptional regu 94.96
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 93.09
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 93.05
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 88.4
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 87.32
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 84.16
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.1e-26  Score=181.47  Aligned_cols=62  Identities=55%  Similarity=0.923  Sum_probs=59.6

Q ss_pred             cCCCCcccCCHHHHHHHHHHHHHhCCCCCChhHHHhhcCCCCCcHHHHHhhhchhhhhhccc
Q 012756          212 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI  273 (457)
Q Consensus       212 ~~kK~Rl~WT~ELH~rFV~AV~qLG~dkAtPK~ILelM~V~gLTr~~VkSHLQKYRl~~k~~  273 (457)
                      ..||+|++||+|||++||+||++||.++||||.|+++|+|+|||++||+|||||||++++++
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999999999999999999999999998875
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Back     information, alignment and structure
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure