Citrus Sinensis ID: 012768

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFLS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEccccHHHHcccccccccccEEEEccccHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEEcccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccEEEEcccHHHHHHHHHHccccccEEEEEccccEEHccccccEEEcHcHcccHHHHHHHHHHHHHcccccEEEEccccHHHHHccHHHHHcccEEEEccccHHHHHHHHHHHHHccccEEEEEEEcEEEEEEEEEcccEEEEccccccccccccccccHHHHHHHHHcccccccHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEcccHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSMSTLRIWGEQGQAALEKASVCllncgptgsetLKNLVLggigsitvidgskvevgdlgnnfmldescvgesKAKSVCAFLQELNDAVKAKFIEEYPEaliemnppffsQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEhtvveskpdhflddlrlnnpwpelRKFAEtfdlnvpdpvahkhtPYVVILIKMSEewtnshggslpstrEEKREFKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLqsadssffpfsiaigrpwiFAEADCLAIEQRVRNNLkklgrepesiSKATIKSFCRNARKLKVCRYRlledefsnpsvpdiqkyltdedysvAMGFYILLRAVDRFAAnynnypgefdgpmdediSRLKTTAVSVLNdlgcngstLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFLS
Flexible Loop (DISEMBL)
MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTvveskpdhflddlrlnNPWPELRKFAETfdlnvpdpvaHKHTPYVVILIKMSEEWtnshggslpstreeKREFKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNnlkklgrepesiskatiksfcrnaRKLKVCRYRlledefsnpsvpdiqKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFLS
Low Complexity Region (SEG)
MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTreekrefkellkskMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFLS
Disordered region (IsUnstruct)
******RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEW*************************MVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKL*******SKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFL*
Disordered Region (DISOPRED)
MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV*********DLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHG*******E*KREFKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNN***EFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFLS
Disordered Region (DISEMBL)
MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEW****************EFKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFLS
Disordered Region (DISPRO)
*SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVFLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
P42744	540	NEDD8-activating enzyme E	yes	no	0.982	0.829	0.676	0.0
Q6NTW6	533	NEDD8-activating enzyme E	N/A	no	0.975	0.834	0.362	5e-92
Q54JM3	520	NEDD8-activating enzyme E	yes	no	0.971	0.851	0.382	1e-91
Q7SXP2	533	NEDD8-activating enzyme E	yes	no	0.967	0.827	0.376	2e-91
Q8VBW6	534	NEDD8-activating enzyme E	yes	no	0.975	0.833	0.379	8e-91
Q5ZIE6	535	NEDD8-activating enzyme E	yes	no	0.975	0.831	0.375	9e-91
Q9Z1A5	534	NEDD8-activating enzyme E	yes	no	0.975	0.833	0.370	2e-90
Q13564	534	NEDD8-activating enzyme E	yes	no	0.971	0.829	0.363	1e-89
Q4R3L6	510	NEDD8-activating enzyme E	N/A	no	0.918	0.821	0.343	1e-80
Q9VTE9	524	NEDD8-activating enzyme E	yes	no	0.947	0.824	0.338	7e-71

>sp|P42744|ULA1_ARATH NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1 PE=1 SV=1

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/488 (67%), Positives = 388/488 (79%), Gaps = 40/488 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGE GQAALE+AS+CLLNCGPTGSE LKNLVLGG+GSITV+DGSKV+ GDLGNNFM+
Sbjct: 28  LRIWGEVGQAALEEASICLLNCGPTGSEALKNLVLGGVGSITVVDGSKVQFGDLGNNFMV 87

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           D   VG+SKAKSVCAFLQELND+V AKFIEE P+ LI  NP FFSQFTLV+ATQL E+ M
Sbjct: 88  DAKSVGQSKAKSVCAFLQELNDSVNAKFIEENPDTLITTNPSFFSQFTLVIATQLVEDSM 147

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           +KLDRICR+ANV L+  RSYGL GFVRISVKEH +++SKPDHFLDDLRLNNPWPEL+ F 
Sbjct: 148 LKLDRICRDANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLNNPWPELKSFV 207

Query: 186 ETFDLNVPDP-VAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAID 244
           ET DLNV +P  AHKH PYVVIL+KM+EEW  SH G+LPSTREEK+EFK+L+KSKMV+ D
Sbjct: 208 ETIDLNVSEPAAAHKHIPYVVILVKMAEEWAQSHSGNLPSTREEKKEFKDLVKSKMVSTD 267

Query: 245 EDNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------ 292
           EDNYKEAIEA+FKVFAP GI   + K++       +++SS F   +A  + ++       
Sbjct: 268 EDNYKEAIEAAFKVFAPRGISSEVQKLINDSCAEVNSNSSAFWVMVAALKEFVLNEGGGE 327

Query: 293 ---------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKS 325
                                      AEAD L IE+RV+N LKK+GR+P SI K TIKS
Sbjct: 328 APLEGSIPDMTSSTEHYINLQKIYLAKAEADFLVIEERVKNILKKIGRDPSSIPKPTIKS 387

Query: 326 FCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNY 385
           FC+NARKLK+CRYR++EDEF NPSV +IQKYL DEDYS AMGFYILLRA DRFAANYN +
Sbjct: 388 FCKNARKLKLCRYRMVEDEFRNPSVTEIQKYLADEDYSGAMGFYILLRAADRFAANYNKF 447

Query: 386 PGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVA 445
           PG+FDG MDEDISRLKTTA+S+L DLGCNGS L +DLI+EMCRFGA+E+H V+AF+GG+A
Sbjct: 448 PGQFDGGMDEDISRLKTTALSLLTDLGCNGSVLPDDLIHEMCRFGASEIHVVSAFVGGIA 507

Query: 446 SQEVIKVV 453
           SQEVIK+V
Sbjct: 508 SQEVIKLV 515

Regulatory subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1. Plays an important role in auxin response.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6NTW6|ULA1_XENLA NEDD8-activating enzyme E1 regulatory subunit OS=Xenopus laevis GN=nae1 PE=2 SV=1

 Score =  338 bits (867), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 291/496 (58%), Gaps = 51/496 (10%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIG  T++DG+ V   D+GNNF L
Sbjct: 16  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGLFTIVDGNVVAGEDVGNNFFL 75

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
            +  +G+++A++    LQELND V   F+ E PE L++ +P FF +FT+V++TQL E  +
Sbjct: 76  QKESIGKNRAQTSMELLQELNDDVTGNFVPESPEQLLDKDPSFFCKFTMVISTQLPESTL 135

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L     ++N+ L+  R+YG  G++RI VKEHTV+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 136 LRLAETLWDSNIPLLVCRAYGFVGYMRIIVKEHTVIESHPDNALEDLRLDQPFPELREHL 195

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKM----- 240
           +++DL+  +   H HTP+++++ K  ++W + +GG +P + +EK  F++L++  +     
Sbjct: 196 QSYDLDHMERKDHSHTPWIIVVAKYLDKWRSENGGQMPKSYKEKESFRDLIRQGILKNEN 255

Query: 241 -VAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQS--------ADSSFFPFSIAIGR--- 288
            V  DE+N++EAI+          +  ++ ++L            +SF+  + A+     
Sbjct: 256 GVPEDEENFEEAIKNVNTALNITKVSSSVEEILNDDRCTNLTHQSTSFWILARAVKEFMA 315

Query: 289 -------------PWIFAEADCL----------------AIEQRVRNNLKKLGREPESIS 319
                        P + A++D                  A+E  V   L+ +GR PESIS
Sbjct: 316 MEGKGNLPLRGTIPDMIADSDKFIKLQNIYREKAKKDASAVESCVSKLLQSVGRPPESIS 375

Query: 320 KATIKSFCRNARKLKVCRYRLLEDEFSNPSVP--DIQKYLTDEDYSVAMGFYILLRAVDR 377
           +  I+ FCRN   L+V R R LE+E+   +    DI   + + D  + +  Y++LRAVDR
Sbjct: 376 ERDIRLFCRNCAFLRVVRCRSLEEEYGLDTAKKDDIVSLMENPDNEIVL--YLMLRAVDR 433

Query: 378 FAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAV 437
           F      YPG ++  ++ DI +LK+    +L + G +  T+ ++ I E CR+GAAE H +
Sbjct: 434 FQKQLGRYPGIYNYQIESDIGKLKSCLNGLLQEYGLS-LTVKDEYIQEFCRYGAAEPHTI 492

Query: 438 AAFIGGVASQEVIKVV 453
           A+F+GG A+QE IK++
Sbjct: 493 ASFLGGAAAQEAIKII 508

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Xenopus laevis (taxid: 8355)

>sp|Q54JM3|ULA1_DICDI NEDD8-activating enzyme E1 regulatory subunit OS=Dictyostelium discoideum GN=nae1 PE=3 SV=1

 Score =  337 bits (864), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 265/486 (54%), Gaps = 43/486 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WGE GQ+ LE++ + LLN   TG+ETLKNLVL GIGS TV+D  KV   DLGNNF +
Sbjct: 15  LRLWGEDGQSKLERSHILLLNGSATGTETLKNLVLPGIGSFTVVDNKKVTESDLGNNFFV 74

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           + S +G+ +A  VC  L+ELND VK   +EE P  LI  N  FF  F+LVVA +L EE +
Sbjct: 75  ERSSLGKPRATVVCELLRELNDRVKGFSVEECPIHLINNNISFFKDFSLVVANRLSEEAL 134

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           + L +   E N+ L+   SYG  G++RIS  EH ++ESKPD  +DDLR+ NP+ +L   A
Sbjct: 135 LTLSQYLTEQNIPLLITNSYGYIGYLRISTPEHQIIESKPDDPIDDLRIYNPFKQLVDMA 194

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           +  +L+  +   H H PYV++LIK  +EW ++H   +P TR EK EFK+   S   + DE
Sbjct: 195 DALELDKLNTQQHSHVPYVLLLIKFLKEWRSTHNDKMPETRAEKDEFKKFFNSHSWSADE 254

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------- 292
            N+ E I+   K   PP +   +  +L+      + +S  F   +A  + ++        
Sbjct: 255 MNFVEGIQNLLKYIQPPRVPGDVQNLLKDPKTNITENSDDFWVLVAALKEFMTNNDNTLP 314

Query: 293 -------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSFC 327
                                    A AD       V   L K+G+   SIS   +K FC
Sbjct: 315 LHGNVPDMTSETHNFIQLQKGYQEKALADLSEFSGYVDQILTKVGK--SSISSDLVKKFC 372

Query: 328 RNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPG 387
           +N R L + RYR + +E++ P    I+  L   D    M FYILLR +D+F   Y+ YPG
Sbjct: 373 KNTRFLNIIRYRTISEEYNQPKTNLIKSELEQAD--TVMVFYILLRGIDKFYKTYHKYPG 430

Query: 388 EFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQ 447
             D   + DI  LKT     L ++  +   + +D I E  RFG +ELH +A+ +GGV SQ
Sbjct: 431 SSDD-FESDIPLLKTVITQYLAEINISNDLVKDDYIAEFVRFGGSELHNIASLMGGVTSQ 489

Query: 448 EVIKVV 453
           E+IK++
Sbjct: 490 EIIKLI 495

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7SXP2|ULA1_DANRE NEDD8-activating enzyme E1 regulatory subunit OS=Danio rerio GN=nae1 PE=2 SV=2

 Score =  336 bits (862), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/500 (37%), Positives = 283/500 (56%), Gaps = 59/500 (11%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   +G+E LKNLVL GIG+ T++DG KV   D+GNNF L
Sbjct: 16  LRLWGDHGQEALENAHVCLINATASGTEILKNLVLPGIGAFTIVDGHKVSGEDVGNNFFL 75

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++    LQELN  V   F+EE P+ L++ +  FF +F+LV+A QL E   
Sbjct: 76  SSSAIGKNRAQAATELLQELNSDVSGNFVEESPDKLLDNDCEFFHRFSLVIAVQLPESTC 135

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +  EA V  +  R+YGL G++R+ VKEHTVVES PD+ L+DLRL+ P+ EL++  
Sbjct: 136 LRLGAVLWEAGVPFLVCRTYGLIGYMRLIVKEHTVVESHPDNALEDLRLDQPFTELKRHV 195

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-- 243
           E++DL+  +   H HTP+++++ +  E+W N +   LP   +EK  F++LL+  ++    
Sbjct: 196 ESYDLDNMEKKDHSHTPWIIVVARYLEKWYNENNSQLPKNYKEKEAFRQLLREGILKNEN 255

Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKV--------LQSADSSFF----------- 280
               DE+N++EAI+       P  I      +        + S  SSF+           
Sbjct: 256 GGLEDEENFEEAIKNVNTALNPTKISSGTQDIFNAEQCENITSQSSSFWVMAHGVRDFVQ 315

Query: 281 -------------PFSIAIGRPWI--------FAEADCLAIEQRVRNNLKKLGREPESIS 319
                        P  IA    +I         A  D   + + V   L+ +G+ PESIS
Sbjct: 316 NEGNGNLPVRGSIPDMIADSDKFIKLQNVYRDKAMRDAAVVSKHVEMLLQSVGKTPESIS 375

Query: 320 KATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVA------MGFYILLR 373
           +  IK FC+NA  L+V R R L DE+S      +  +  DE  S        M  Y++LR
Sbjct: 376 EQEIKLFCKNAAFLRVVRCRSLADEYS------VDTFNKDEITSCMDSPDSEMVLYLMLR 429

Query: 374 AVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAE 433
           +VDRF   ++ YPG ++  ++EDI++LK    S+L +   N   + +D I+E CR+GAAE
Sbjct: 430 SVDRFYQQHSRYPGVYNYQVEEDINKLKLCVNSLLQEYSLN-VNVKDDYIHEFCRYGAAE 488

Query: 434 LHAVAAFIGGVASQEVIKVV 453
            H VAAF+GG A+QE IK++
Sbjct: 489 PHTVAAFLGGSAAQEAIKII 508

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Danio rerio (taxid: 7955)

>sp|Q8VBW6|ULA1_MOUSE NEDD8-activating enzyme E1 regulatory subunit OS=Mus musculus GN=Nae1 PE=2 SV=1

 Score =  334 bits (857), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 188/496 (37%), Positives = 290/496 (58%), Gaps = 51/496 (10%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG+ V   D GNNF L
Sbjct: 17  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNLVSGEDAGNNFFL 76

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
            +S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E  +
Sbjct: 77  QKSSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLLESTL 136

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHL 196

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-- 243
           +++DL+  +   H HTP++VI+ K   +W N   G +P + +EK +F++L++  ++    
Sbjct: 197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYNETNGRIPKSYKEKEDFRDLIRQGILKNEN 256

Query: 244 ----DEDNYKEAIE----ASFKVFAPPGIK--------LALSK------VLQSADSSF-- 279
               DE+N++EAI+    A      P  I+        + ++K      +L  A   F  
Sbjct: 257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPTFWILARALKEFVA 316

Query: 280 ------------FPFSIAIGRPWI--------FAEADCLAIEQRVRNNLKKLGREPESIS 319
                        P  IA    +I         A+ D  A+   V   L+ +G+ PESIS
Sbjct: 317 KEGQGNLPVRGTIPDMIADSNKYIKLQNVYREKAKKDAAAVGNHVAKLLQSVGQAPESIS 376

Query: 320 KATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAVDR 377
           +  +K  C N+  L+V R R L +E+   +V   +I   + + D  + +  Y++LRAVDR
Sbjct: 377 EKELKLLCSNSAFLRVVRCRSLAEEYGLDTVNKDEIISSMDNPDNEIVL--YLMLRAVDR 434

Query: 378 FAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAV 437
           F   +  YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H +
Sbjct: 435 FHKQHGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPHTI 493

Query: 438 AAFIGGVASQEVIKVV 453
           AAF+GG A+QEVIK++
Sbjct: 494 AAFLGGAAAQEVIKII 509

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Mus musculus (taxid: 10090)

>sp|Q5ZIE6|ULA1_CHICK NEDD8-activating enzyme E1 regulatory subunit OS=Gallus gallus GN=NAE1 PE=2 SV=1

 Score =  334 bits (856), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 186/496 (37%), Positives = 287/496 (57%), Gaps = 51/496 (10%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VC++N   TG+E LKNLVL GIGS T++DG++V   D+GNNF L
Sbjct: 18  LRLWGDHGQEALESAHVCVINATATGTEILKNLVLPGIGSFTIVDGNRVSGEDVGNNFFL 77

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
            +S +G+S+A+S    LQELN+ V   F+EE PE L++ +P FF++F LVVATQL E  +
Sbjct: 78  QKSHIGQSRAQSATELLQELNNDVSGNFVEESPETLLDNDPSFFNRFNLVVATQLSESTV 137

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   +N+ L+  R+YGL G++RI +KEH VVES PD+ L+DLRL+  +PEL +  
Sbjct: 138 LRLAELLWNSNIPLLICRTYGLVGYMRIIIKEHPVVESHPDNALEDLRLDKQFPELTEHI 197

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-- 243
           +++DL+  D   H HTP++VI+ K   +W N     LP + +EK  F++L++  ++    
Sbjct: 198 QSYDLDHMDKKDHSHTPWIVIVAKYLTKWFNEKSDQLPKSYKEKEAFRQLIRQGILKNEN 257

Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKV--------LQSADSSFF----------- 280
               DE+N++EAI+          I   + ++        L     SF+           
Sbjct: 258 GTPEDEENFEEAIKNVNTALNTTKIPRCIEEIFNDDCCVNLTEQSPSFWILVRAVKEFVA 317

Query: 281 -------------PFSIAIGRPWI--------FAEADCLAIEQRVRNNLKKLGREPESIS 319
                        P  IA    +I         A+ D  A+       L+ LG+ PESIS
Sbjct: 318 NEGQGCLPVRGTIPDMIADSSKFIKLQNVYREKAKRDIAAVGNHAAKLLQSLGKAPESIS 377

Query: 320 KATIKSFCRNARKLKVCRYRLLEDEF--SNPSVPDIQKYLTDEDYSVAMGFYILLRAVDR 377
           +  +K  C N+  L+V R R L +E+  +  +  +I   + + D  V +  Y++LRAVDR
Sbjct: 378 ERELKLLCSNSAFLRVVRCRSLSEEYGLNTFNKDEIISNMDNPDSEVVL--YLMLRAVDR 435

Query: 378 FAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAV 437
           F   +  YPG ++  +++DI +LK+   S L + G +   + +D ++E CR+GAAE HA+
Sbjct: 436 FYKQHGRYPGVYNYQVEDDIGKLKSCLTSFLQEHGLS-VLVKDDYVHEFCRYGAAEPHAI 494

Query: 438 AAFIGGVASQEVIKVV 453
           AAF+GG A+QE+IKV+
Sbjct: 495 AAFMGGAAAQEIIKVI 510

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M.

Gallus gallus (taxid: 9031)

>sp|Q9Z1A5|ULA1_RAT NEDD8-activating enzyme E1 regulatory subunit OS=Rattus norvegicus GN=Nae1 PE=1 SV=1

 Score =  333 bits (853), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/496 (37%), Positives = 286/496 (57%), Gaps = 51/496 (10%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D+GNNF L
Sbjct: 17  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDVGNNFFL 76

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
            +  +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E  +
Sbjct: 77  QKCSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLLESTL 136

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-- 243
           +++DL+  +   H HTP++VI+ K   +W +   G +P + +EK +F+EL++  ++    
Sbjct: 197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKSYKEKEDFRELIRQGILKNEN 256

Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKV--------LQSADSSFF----------- 280
               DE+N++EAI+          I  ++  +        +     SF+           
Sbjct: 257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVA 316

Query: 281 -------------PFSIAIGRPWI--------FAEADCLAIEQRVRNNLKKLGREPESIS 319
                        P  IA    +I         A+ D  A+   V   L+  G+ PESIS
Sbjct: 317 KEGQGNLPVRGTIPDMIADSNKYIKLQNVYREKAKKDAAAVGNHVAKLLQSCGQAPESIS 376

Query: 320 KATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAVDR 377
           +  +K  C N+  L+V R R L +E+   +V   +I   + + D  + +  Y++LRAVDR
Sbjct: 377 EKELKLLCSNSAFLRVVRCRSLAEEYGLHTVNKDEIISSMDNPDNEIVL--YLMLRAVDR 434

Query: 378 FAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAV 437
           F   +  YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H V
Sbjct: 435 FHKQHGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPHTV 493

Query: 438 AAFIGGVASQEVIKVV 453
           AAF+GG A+QEVIK++
Sbjct: 494 AAFLGGAAAQEVIKII 509

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Rattus norvegicus (taxid: 10116)

>sp|Q13564|ULA1_HUMAN NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1

 Score =  330 bits (847), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/498 (36%), Positives = 279/498 (56%), Gaps = 55/498 (11%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 17  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 76

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct: 77  QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 136

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-- 243
           +++DL+  +   H HTP++VI+ K   +W +   G +P T +EK +F++L++  ++    
Sbjct: 197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 256

Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA---- 295
               DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct: 257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEF 314

Query: 296 --------------------------------------DCLAIEQRVRNNLKKLGREPES 317
                                                 D  A+   V   L+ +G+ PES
Sbjct: 315 VAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPES 374

Query: 318 ISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAV 375
           IS+  +K  C N+  L+V R R L +E+   ++   +I   + + D  + +  Y++LRAV
Sbjct: 375 ISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLRAV 432

Query: 376 DRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELH 435
           DRF      YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H
Sbjct: 433 DRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPH 491

Query: 436 AVAAFIGGVASQEVIKVV 453
            +AAF+GG A+QEVIK++
Sbjct: 492 TIAAFLGGAAAQEVIKII 509

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Homo sapiens (taxid: 9606)

>sp|Q4R3L6|ULA1_MACFA NEDD8-activating enzyme E1 regulatory subunit OS=Macaca fascicularis GN=NAE1 PE=2 SV=1

 Score =  300 bits (768), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/498 (34%), Positives = 266/498 (53%), Gaps = 79/498 (15%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 17  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 76

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+S                        PE L++ +P FF +FT+VVATQL E  +
Sbjct: 77  QRSSIGKS------------------------PENLLDNDPSFFCRFTVVVATQLPESTL 112

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 113 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 172

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-- 243
           +++DL+  +   H HTP++VI+ K   +W +   G +P T +EK +F++L++  ++    
Sbjct: 173 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 232

Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA---- 295
               DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct: 233 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEF 290

Query: 296 --------------------------------------DCLAIEQRVRNNLKKLGREPES 317
                                                 D  A+   V   L+ +G+ PES
Sbjct: 291 VAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPES 350

Query: 318 ISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAV 375
           IS+  +K  C N+  L+V R R L +E+   ++   +I   + + D  + +  Y++LRAV
Sbjct: 351 ISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLRAV 408

Query: 376 DRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELH 435
           DRF   +  YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H
Sbjct: 409 DRFHKQHGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPH 467

Query: 436 AVAAFIGGVASQEVIKVV 453
            +AAF+GG A+QEVIK++
Sbjct: 468 TIAAFLGGAAAQEVIKII 485

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Macaca fascicularis (taxid: 9541)

>sp|Q9VTE9|ULA1_DROME NEDD8-activating enzyme E1 regulatory subunit OS=Drosophila melanogaster GN=APP-BP1 PE=1 SV=1

 Score =  268 bits (684), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 167/494 (33%), Positives = 259/494 (52%), Gaps = 62/494 (12%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           +R+WGE GQ  LE A+VCL+N    G ET K LVL GIG  TV DGS V+  DLGNNF L
Sbjct: 22  IRLWGEHGQTLLEAATVCLVNVTAVGCETAKGLVLPGIGGFTVADGSTVKEEDLGNNFFL 81

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           D S +G+SKA +    LQELN  V   +++E  + L+   P FF  F LV+A+ L E+ +
Sbjct: 82  DSSYLGKSKALACMQLLQELNPDVNGDYVDESADFLLANRPNFFDSFDLVIASNLNEQTL 141

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           + L     E NV LI+ RS G+ G +R+ ++EH +VE+ PD+   DLRL +P+  LR+  
Sbjct: 142 LLLAERLWELNVPLIYCRSLGMLGTIRLQIREHCIVEAHPDNRQFDLRLEHPFDALREHL 201

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH--GGSLPSTREEKREFKELLKSKMVAI 243
           +  ++           P++++L K    W      G   P   +EK + KE ++ +M A 
Sbjct: 202 DGTEVT-------SKVPWLLVLHKYLNVWQKQQADGTQTPRNYKEKNQLKETIREEMKA- 253

Query: 244 DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA-------- 295
           DE+NY+EAI+A    F    +  +L  + +  D +    +      WI A+A        
Sbjct: 254 DEENYEEAIKAVNTAFGAGQVPKSLKAIFE--DDACEQLNKKSNVFWIMAKALKHFVIHE 311

Query: 296 ----------------------------------DCLAIEQRVRNNLKKLGREPESISKA 321
                                             D   +  + +  LK+L    +SI + 
Sbjct: 312 NEGHLPLPGVLPDMTANTDSYIALQHIYRQQALQDADQVYHKCQEYLKQLALPADSIDER 371

Query: 322 TIKSFCRNARKLKVCRYRLLEDEFSNPS--VPDIQKYLTDEDYSVAMGFYILLRAVDRFA 379
           +++  C+ A  L V R   + +E+   S  +P ++    +E       +   LRA +RF 
Sbjct: 372 SVRLICKEAAGLAVIRGTRIAEEYEKSSRLLPLVED---NELQGNLTAYNFALRAYERFL 428

Query: 380 ANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAA 439
           +   N PGE    +++DI RLK+ A  +L+DLG + +T+++D+++E+CR+G AELHAV+A
Sbjct: 429 SECGNIPGEC--IVEQDIGRLKSIAAKMLSDLGMH-ATISDDVLHEICRYGGAELHAVSA 485

Query: 440 FIGGVASQEVIKVV 453
           FIGG A+QEVIK++
Sbjct: 486 FIGGCAAQEVIKII 499

Regulatory subunit of the dimeric Uba3-Ula1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-Uba3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of Ubc12 (By similarity). Appl and APP-BP1 interact antagonistically during development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
225447007	523	PREDICTED: NEDD8-activating enzyme E1 re	0.982	0.856	0.751	0.0
255566401	523	NEDD8-activating enzyme E1 regulatory su	0.982	0.856	0.741	0.0
224128954	521	predicted protein [Populus trichocarpa]	0.978	0.856	0.726	0.0
449468362	523	PREDICTED: NEDD8-activating enzyme E1 re	0.982	0.856	0.712	0.0
388512807	523	unknown [Lotus japonicus]	0.982	0.856	0.708	0.0
356517638	523	PREDICTED: NEDD8-activating enzyme E1 re	0.982	0.856	0.704	0.0
356542822	523	PREDICTED: NEDD8-activating enzyme E1 re	0.982	0.856	0.691	0.0
388493680	523	unknown [Medicago truncatula]	0.982	0.856	0.683	0.0
297848782	540	hypothetical protein ARALYDRAFT_470511 [	0.982	0.829	0.672	0.0
15220442	540	amyloid beta precursor protein binding p	0.982	0.829	0.676	0.0

>gi|225447007|ref|XP_002267415.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit [Vitis vinifera] gi|297739147|emb|CBI28798.3| unnamed protein product [Vitis vinifera]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/487 (75%), Positives = 406/487 (83%), Gaps = 39/487 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGEQGQ ALEKAS+CLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE+GDLGNNFM+
Sbjct: 12  LRIWGEQGQEALEKASICLLNCGPTGSETLKNLVLGGIGSITVIDGSKVELGDLGNNFMV 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           DES +G+SKAK VCA LQELNDAVKAKFIEEYPEALIE NP FFSQFTLV+ATQL E+ M
Sbjct: 72  DESSIGQSKAKCVCASLQELNDAVKAKFIEEYPEALIETNPSFFSQFTLVIATQLVEDSM 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           IKLDRICREANVMLIFARSYGLTGFVRIS+KEH V+ESKPDHFLDDLRLNNPWPELR FA
Sbjct: 132 IKLDRICREANVMLIFARSYGLTGFVRISLKEHAVIESKPDHFLDDLRLNNPWPELRGFA 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           ET DLNV DPV HKHTPYVVIL+KM+E+WT SH G LPSTREEK+EFK+LLKSKM+A+DE
Sbjct: 192 ETIDLNVSDPVVHKHTPYVVILVKMAEQWTKSHDGKLPSTREEKKEFKDLLKSKMIAMDE 251

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQSA----DSSFFPFSIAIGRPWIF--------- 292
           DNYKEAIEASFKVFAP GI   L +++  +    DSS   F + +     F         
Sbjct: 252 DNYKEAIEASFKVFAPRGISSNLQQIIDDSRADVDSSSSNFWVMVASLKEFIANEGGGEA 311

Query: 293 --------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSF 326
                                     AEAD L IEQRVRN LKK+GR+P+SISKA IKSF
Sbjct: 312 PLEGSIPDMTSSTEHYVNLQKIYQAKAEADFLVIEQRVRNILKKIGRDPDSISKANIKSF 371

Query: 327 CRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
            +NARKL VCRYRLLE+EF++P  P++QKYLTDEDYSVA+GFYILLRAVDRFAANYN++P
Sbjct: 372 SKNARKLTVCRYRLLEEEFNSPIQPELQKYLTDEDYSVAVGFYILLRAVDRFAANYNSFP 431

Query: 387 GEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVAS 446
           G+FDG MDEDISRLKTTAVS+L+DLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGG+AS
Sbjct: 432 GQFDGGMDEDISRLKTTAVSLLSDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGIAS 491

Query: 447 QEVIKVV 453
           QEVIK++
Sbjct: 492 QEVIKLI 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566401|ref|XP_002524186.1| NEDD8-activating enzyme E1 regulatory subunit, putative [Ricinus communis] gi|223536555|gb|EEF38201.1| NEDD8-activating enzyme E1 regulatory subunit, putative [Ricinus communis]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/487 (74%), Positives = 407/487 (83%), Gaps = 39/487 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGEQGQAALEKAS+CLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE GDLGNNFM+
Sbjct: 12  LRIWGEQGQAALEKASICLLNCGPTGSETLKNLVLGGIGSITVIDGSKVETGDLGNNFMV 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           DES VG+ KAK VCAFLQELNDAVKAKFIEE+PEALIE NP FFSQFTLVVATQL E+ M
Sbjct: 72  DESSVGQPKAKCVCAFLQELNDAVKAKFIEEHPEALIETNPSFFSQFTLVVATQLVEDSM 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           +KLDRICREANVMLIFARSYGL GFVRISVKEHTV+ESKPDHFLDDLRLNNPWPEL+ FA
Sbjct: 132 VKLDRICREANVMLIFARSYGLAGFVRISVKEHTVIESKPDHFLDDLRLNNPWPELKSFA 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           ET DLNV DPVAHKHTPY++IL+KM++EW  +HGGSLPS+R+EK++FKEL+K+ M+A+DE
Sbjct: 192 ETIDLNVADPVAHKHTPYIIILVKMADEWAKAHGGSLPSSRDEKKQFKELIKAGMIALDE 251

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------- 292
           DNY+EA EASFKVFAP GI   L +++        + SS F   +A  + +I        
Sbjct: 252 DNYREATEASFKVFAPRGISPDLQQIISDNRADLDSSSSNFWVMVAALKEFIVNEGDGEA 311

Query: 293 --------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSF 326
                                     AEAD L IE+RVRN LKK+GR+P SISKA IK F
Sbjct: 312 PLEGSIPDMTSSTELYVNLQKIYQAKAEADFLVIEKRVRNILKKIGRDPNSISKAMIKCF 371

Query: 327 CRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
           C+NARKLKVCRYRL+EDEF+NPS+P +QKYLTDEDYSVAMGFYILLRAVDRFAANYN++P
Sbjct: 372 CKNARKLKVCRYRLIEDEFNNPSLPQLQKYLTDEDYSVAMGFYILLRAVDRFAANYNSFP 431

Query: 387 GEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVAS 446
           G+FDG MDEDISRLKTTAVS+L+DLGCNGS LTEDLINEMCRFGA+ELHAVAAFIGGVAS
Sbjct: 432 GQFDGAMDEDISRLKTTAVSLLSDLGCNGSPLTEDLINEMCRFGASELHAVAAFIGGVAS 491

Query: 447 QEVIKVV 453
           QEVIK++
Sbjct: 492 QEVIKLI 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128954|ref|XP_002320462.1| predicted protein [Populus trichocarpa] gi|222861235|gb|EEE98777.1| predicted protein [Populus trichocarpa]

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/487 (72%), Positives = 410/487 (84%), Gaps = 41/487 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGEQGQAALEKA++CLLNCGPTGSETLKNLVLGG+GSITVIDGSKVE+GDLGNNFM+
Sbjct: 12  LRIWGEQGQAALEKATICLLNCGPTGSETLKNLVLGGVGSITVIDGSKVELGDLGNNFMV 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           DESCVG+SKAK VC FLQELNDAVKAKFIEEYPEALI  NP FFSQFTLVVATQL E+ M
Sbjct: 72  DESCVGQSKAKCVCTFLQELNDAVKAKFIEEYPEALIGSNPSFFSQFTLVVATQLAEDSM 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           IKLD+ICREANV+LIFARSYGLTGFVRISVKEH V+ESKPDHFLDDLRLNNPWPEL++FA
Sbjct: 132 IKLDKICREANVLLIFARSYGLTGFVRISVKEHAVIESKPDHFLDDLRLNNPWPELKRFA 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           ET DLNV DPVAHKHTPYVVIL+K++EEWT +HGG+LPSTR+EK+EFKELLK+ MVA+DE
Sbjct: 192 ETIDLNVTDPVAHKHTPYVVILVKIAEEWTKAHGGALPSTRDEKKEFKELLKAGMVAMDE 251

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQS------ADSSFFPFSIAIGRPWIF------- 292
           DNYKEAIEASFKVFAP GI  +  K++        ++SS F   +A  + +I        
Sbjct: 252 DNYKEAIEASFKVFAPRGI--SEYKIIHDSCSEVESNSSDFWVMVAALKEFIANEGGEEA 309

Query: 293 --------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSF 326
                                     AEAD LAI+QRV++ LK++GR+P+SISK  IKSF
Sbjct: 310 PLEGSIPDMTSSTELYVNLQKIYQAKAEADFLAIQQRVKSILKRMGRDPDSISKEMIKSF 369

Query: 327 CRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
           C+NARKLK+CRYR +EDEF+NP+V ++QKYLTDE+YSVAMGFYILLR+VDRFAANYN++P
Sbjct: 370 CKNARKLKICRYRPIEDEFNNPAVTELQKYLTDEEYSVAMGFYILLRSVDRFAANYNSFP 429

Query: 387 GEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVAS 446
           G+F+G MD DISRLKTT V +L+DLGCNG+T+TEDLINEMCRFGA+ELHAVAAFIGG+AS
Sbjct: 430 GQFEGEMDGDISRLKTTVVGLLSDLGCNGATVTEDLINEMCRFGASELHAVAAFIGGIAS 489

Query: 447 QEVIKVV 453
           QEVIK +
Sbjct: 490 QEVIKPI 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468362|ref|XP_004151890.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Cucumis sativus] gi|449523113|ref|XP_004168569.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Cucumis sativus]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/487 (71%), Positives = 403/487 (82%), Gaps = 39/487 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWG+QGQAALEKAS+CLLNCGPTGSETLKNLVLGGIGSIT++DG+K+E GDLGNNFM+
Sbjct: 12  LRIWGDQGQAALEKASICLLNCGPTGSETLKNLVLGGIGSITIVDGTKIEEGDLGNNFMV 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           DES +G+SKAK VCAFLQELNDAVKAKFIEEYPEALIE  P FFSQFTLVVATQL EE +
Sbjct: 72  DESSIGQSKAKCVCAFLQELNDAVKAKFIEEYPEALIETRPSFFSQFTLVVATQLVEEWI 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           +KLD+ICR ANV+L+ ARSYGLTG VRIS+KEHTV+ESKPDHFLDDLRLNNPWPELR+FA
Sbjct: 132 VKLDKICRNANVILVVARSYGLTGLVRISLKEHTVIESKPDHFLDDLRLNNPWPELRRFA 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           ET DLN PDPVAHKHTPYVVIL+KM+EEW  SHGGSLPS+REEK+ FK+LLK+KM+A+DE
Sbjct: 192 ETIDLNAPDPVAHKHTPYVVILVKMAEEWAKSHGGSLPSSREEKKAFKDLLKAKMIAMDE 251

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------- 292
           DNYKEAIEASFKVFAP GI   L +++        ++SS F   +A  + +I        
Sbjct: 252 DNYKEAIEASFKVFAPRGISSDLKQIVNDSCAEVDSNSSDFWILVAALKEFIVNEGGGEA 311

Query: 293 --------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSF 326
                                     AEAD   IE+R RN LKK+GR+P SISK T+KSF
Sbjct: 312 PMEGSIPDMTSSTEHYVNLQNIYQAKAEADFKIIEERARNILKKIGRDPNSISKTTVKSF 371

Query: 327 CRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
           C+NARKL+VCRYR LEDEF++P VP++QKYLTDED+SVA+GFY+LLRAVDRFAANYN++P
Sbjct: 372 CKNARKLRVCRYRSLEDEFNSPIVPELQKYLTDEDFSVAVGFYLLLRAVDRFAANYNSFP 431

Query: 387 GEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVAS 446
           G+FDG +DEDISRLKTTAV +L+DLGCNG TL+EDLINEMCRFGAAELH VAAF GG+AS
Sbjct: 432 GQFDGGIDEDISRLKTTAVGLLSDLGCNGLTLSEDLINEMCRFGAAELHVVAAFTGGIAS 491

Query: 447 QEVIKVV 453
           QEVIK++
Sbjct: 492 QEVIKLI 498

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512807|gb|AFK44465.1| unknown [Lotus japonicus]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/487 (70%), Positives = 402/487 (82%), Gaps = 39/487 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGEQGQAALEK+S+CLLNCGPTGSETLKNLVLGG+GSITV+DGSKVEVGDLGNNF++
Sbjct: 12  LRIWGEQGQAALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVEVGDLGNNFLV 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           DES +G+SKAK VC+FLQELNDAVKAKF+EEYPE LIE NP FFSQFTLV+ATQL E   
Sbjct: 72  DESSLGQSKAKCVCSFLQELNDAVKAKFVEEYPETLIETNPSFFSQFTLVIATQLVENST 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           IKLD+ICREANVMLIFARSYGLTGFVRIS+KEHTV+ESKPDHFLDDLRLNNPWPEL++FA
Sbjct: 132 IKLDQICREANVMLIFARSYGLTGFVRISLKEHTVIESKPDHFLDDLRLNNPWPELKRFA 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           E FDLN+ DPVAHKH PYVVIL+KM++EW  SHGG LPSTREEK+EFKELLK+ MVA DE
Sbjct: 192 EGFDLNLQDPVAHKHIPYVVILVKMADEWAKSHGGRLPSTREEKKEFKELLKAGMVAQDE 251

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------- 292
           DNYKEAIE+SFKVFAP GI L L ++L        ++SS F   +A  + +I        
Sbjct: 252 DNYKEAIESSFKVFAPRGISLELQQILNDSSAEVDSNSSDFWVMVAALKDFITNEGGGET 311

Query: 293 --------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSF 326
                                     +EAD L IE+ V++ LKK+GR+  SI +ATIKSF
Sbjct: 312 PLEGSIPDMTSSTEQYVNLQNIYQAKSEADFLVIERLVKSTLKKIGRDSNSIPRATIKSF 371

Query: 327 CRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
           C+NARKLKVCRYRL+EDEF+ P++ ++QKYLTDEDYS+A+G YILLRAVDRFAANYN++P
Sbjct: 372 CKNARKLKVCRYRLIEDEFNFPNLSELQKYLTDEDYSIAVGIYILLRAVDRFAANYNSFP 431

Query: 387 GEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVAS 446
           G+FD  MDEDISRLK+TA+ +LNDLGCNG+TL EDLINEMCRFGAAELHAVAA +GG+AS
Sbjct: 432 GQFDSAMDEDISRLKSTAIGLLNDLGCNGATLAEDLINEMCRFGAAELHAVAALVGGIAS 491

Query: 447 QEVIKVV 453
           QEVIK++
Sbjct: 492 QEVIKLI 498

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517638|ref|XP_003527494.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Glycine max]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/487 (70%), Positives = 400/487 (82%), Gaps = 39/487 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGEQGQAALEK+S+CLLNCGPTGSETLKNLVLGG+GSITV+DGSKVEVGDLGNNF++
Sbjct: 12  LRIWGEQGQAALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVEVGDLGNNFLV 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           DE+ +G+SKAK VC+FLQELNDAVKAKF+EE PE LIE NP FFSQFTLVVATQL E  M
Sbjct: 72  DEASLGKSKAKCVCSFLQELNDAVKAKFVEESPETLIETNPSFFSQFTLVVATQLVENSM 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           IKLDRICREANVMLIFARSYGLTGFVRISVKEH V+ESKPDHFLDDLRLNNPWPEL++FA
Sbjct: 132 IKLDRICREANVMLIFARSYGLTGFVRISVKEHAVIESKPDHFLDDLRLNNPWPELKRFA 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           +  DLNV DPVAHKH PYVVIL+KM++EW  SHGG LPSTREEK+EFKELLK+ MVA DE
Sbjct: 192 DDIDLNVQDPVAHKHIPYVVILVKMADEWAKSHGGRLPSTREEKKEFKELLKAGMVAQDE 251

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------- 292
           DNYKEAI+++FKVFAP GI L   ++L        ++SS F   +   + +I        
Sbjct: 252 DNYKEAIDSAFKVFAPRGISLESQQILNDSSAEVDSNSSDFWVLVTALKDFIANEGGGDA 311

Query: 293 --------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSF 326
                                     AEAD L IE+ VR+ LKK+GR+  SISK+TIKSF
Sbjct: 312 PLEGSIPDMTSSTEQYVNLQNIYHAKAEADFLVIERLVRSTLKKIGRDSNSISKSTIKSF 371

Query: 327 CRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
           C+NARKLKVCRYRL+EDEF++P++P++QKYLTDEDYS+A+G YILLRAVDRFAANYN++P
Sbjct: 372 CKNARKLKVCRYRLIEDEFNSPNLPELQKYLTDEDYSIAVGIYILLRAVDRFAANYNSFP 431

Query: 387 GEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVAS 446
           G+FD  MDEDI RLK+TA+++L DLGCNG+TL EDLINEMCRFGAAELHAVAA +GG+AS
Sbjct: 432 GQFDSAMDEDIPRLKSTAIALLTDLGCNGATLAEDLINEMCRFGAAELHAVAALVGGIAS 491

Query: 447 QEVIKVV 453
           QEVIK++
Sbjct: 492 QEVIKLI 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542822|ref|XP_003539864.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Glycine max]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/487 (69%), Positives = 396/487 (81%), Gaps = 39/487 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGEQGQAALEK+S+CLLNCGPTGSETLKNLVLGG+GSITV+DGSKVE GDLGNNF++
Sbjct: 12  LRIWGEQGQAALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVEAGDLGNNFLV 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           DE+ +G+SKAK VC+FLQELNDAVKAKF+EE PE LIE NP FFSQFTLVVATQL E  M
Sbjct: 72  DEASLGKSKAKCVCSFLQELNDAVKAKFVEESPETLIETNPSFFSQFTLVVATQLMENSM 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           IKLD+ICRE NVMLIFARSYGLTGFVRISVKEH V+ESKP+HFLDDLRLNNPWP+L++FA
Sbjct: 132 IKLDQICREVNVMLIFARSYGLTGFVRISVKEHAVIESKPEHFLDDLRLNNPWPKLKRFA 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           +  DLNV DPVAHKH PYVVIL+KM++EW  SHGG LP TREEK+EFKE LK+ MVA DE
Sbjct: 192 DDIDLNVQDPVAHKHIPYVVILVKMADEWAQSHGGRLPLTREEKKEFKEFLKAGMVAQDE 251

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------- 292
           DNYKEAI+++FKVFAP GI L L ++L        ++SS F   +   + +I        
Sbjct: 252 DNYKEAIDSAFKVFAPQGISLELQQILNDSSAEVDSNSSDFWVLVTALKDFIANEGGGEA 311

Query: 293 --------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSF 326
                                     AEAD L IE+ VR+ LKK+GR+  SISK+ IKSF
Sbjct: 312 PLEGSIPDMTSSTEQYVNLQNIYHAKAEADFLVIERLVRSTLKKIGRDSNSISKSIIKSF 371

Query: 327 CRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
           C+NARKLKVCRYRL+EDEF++P++P++QKYLTDEDYS+A+G YILLRAVDRFAANYN++P
Sbjct: 372 CKNARKLKVCRYRLIEDEFNSPNLPELQKYLTDEDYSIAVGIYILLRAVDRFAANYNSFP 431

Query: 387 GEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVAS 446
           G+FD  MDEDI RLK+TA+ +LNDLGCNG+TL EDLINEMCRFGAAELHAVAA +GG+AS
Sbjct: 432 GQFDSAMDEDIPRLKSTAIGLLNDLGCNGATLAEDLINEMCRFGAAELHAVAALVGGIAS 491

Query: 447 QEVIKVV 453
           QEVIK++
Sbjct: 492 QEVIKLI 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493680|gb|AFK34906.1| unknown [Medicago truncatula]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/487 (68%), Positives = 396/487 (81%), Gaps = 39/487 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWG+QGQAALEK+++CLLNCGPTGSETLKNLVLGGIGSITV+DGSKVEVGDLGNNF++
Sbjct: 12  LRIWGDQGQAALEKSNICLLNCGPTGSETLKNLVLGGIGSITVVDGSKVEVGDLGNNFLV 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           DE+ +GE KAK VC+FLQELNDAVKAK+IEEYP+ LIE NP FFSQFTLVVATQL E  M
Sbjct: 72  DEASLGEPKAKIVCSFLQELNDAVKAKYIEEYPDKLIETNPSFFSQFTLVVATQLVESSM 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           +KLD+ICREANV+LIFARSYGL GFVRIS+KEHTV+ESKP+HFLDDLRLNNPWPEL++FA
Sbjct: 132 VKLDKICREANVILIFARSYGLAGFVRISLKEHTVIESKPEHFLDDLRLNNPWPELKRFA 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAIDE 245
           E F+LNV DPVAHKH PYVVIL+KM++EW  SHGG LPSTREEK+EFKELLK+ MVA DE
Sbjct: 192 EGFELNVHDPVAHKHIPYVVILVKMADEWAKSHGGRLPSTREEKKEFKELLKAGMVAPDE 251

Query: 246 DNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------- 292
           DNYKEA+E+SFKVFAP GI   L  +L        + SS F   +A  + ++        
Sbjct: 252 DNYKEAMESSFKVFAPRGISSELQLILNDSSVEVDSSSSDFWVLVAALKDFVANEGGGEA 311

Query: 293 --------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKSF 326
                                     AEAD LAIE+  RN LKK+G +P SI +ATIKSF
Sbjct: 312 PLEGSIPDMTSSTEQYVNLQNIYQAKAEADFLAIERMARNTLKKIGGDPNSIPRATIKSF 371

Query: 327 CRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
           C+NARKLKVCRYR +EDEF++P++ ++QKYLTDED+S A+G YILLRAVDRFAANYN +P
Sbjct: 372 CKNARKLKVCRYRPIEDEFNSPNLSELQKYLTDEDHSFAVGIYILLRAVDRFAANYNRFP 431

Query: 387 GEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVAS 446
           G+FD  MDEDI+RLK+T++S+LN+LGCN +TL +DLINEMCRFGA+ELHAVAA +GG+AS
Sbjct: 432 GQFDSAMDEDIARLKSTSISLLNELGCNSATLADDLINEMCRFGASELHAVAALVGGIAS 491

Query: 447 QEVIKVV 453
           QEVIK++
Sbjct: 492 QEVIKLI 498

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848782|ref|XP_002892272.1| hypothetical protein ARALYDRAFT_470511 [Arabidopsis lyrata subsp. lyrata] gi|297338114|gb|EFH68531.1| hypothetical protein ARALYDRAFT_470511 [Arabidopsis lyrata subsp. lyrata]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/488 (67%), Positives = 390/488 (79%), Gaps = 40/488 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGE GQAALE+AS+CLLNCGPTGSE LKNLVLGG+G IT++DGS V++GDLGNNFM+
Sbjct: 28  LRIWGEVGQAALEEASICLLNCGPTGSEALKNLVLGGVGCITIVDGSTVQIGDLGNNFMV 87

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           D   VG+SKAKSVCAFLQELND+V A+FIEE P+ LI  NP FFSQFTLV+ATQL E+ M
Sbjct: 88  DAKSVGQSKAKSVCAFLQELNDSVNARFIEENPDTLITTNPSFFSQFTLVIATQLVEDSM 147

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           +KLDRICREANV L+  RSYGL GFVRISVKEH +++SKPDHFLDDLRLNNPWPEL+ F 
Sbjct: 148 VKLDRICREANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLNNPWPELKSFV 207

Query: 186 ETFDLNVPD-PVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAID 244
           ET DLNV + P AHKH PYVVIL+KM+EEW  SH G+LPSTREEK+EFK+L+KSKM++ D
Sbjct: 208 ETIDLNVSEPPAAHKHIPYVVILVKMAEEWALSHSGNLPSTREEKKEFKDLVKSKMISTD 267

Query: 245 EDNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------ 292
           EDNYKEAIEA+FKVFAP GI   + K++       +++SS F   +A  + ++       
Sbjct: 268 EDNYKEAIEAAFKVFAPRGISSEVQKLINDSCAEANSNSSAFWVMVAALKEFVLNEGDGE 327

Query: 293 ---------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKS 325
                                      AEAD LA+E+RV+N LKK+GR+P SISK TIKS
Sbjct: 328 APLEGSIPDMTSSTEHYINLQKIYLAKAEADFLAMEERVKNILKKIGRDPNSISKPTIKS 387

Query: 326 FCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNY 385
           FC+NARKLK+CRYR++EDEFSNPSV +IQKYL DEDYS AMGFYILLRA DRFAANYN +
Sbjct: 388 FCKNARKLKLCRYRMVEDEFSNPSVTEIQKYLADEDYSGAMGFYILLRAADRFAANYNKF 447

Query: 386 PGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVA 445
           PG+FDG MDEDISRLKTTA+S+L DLGCNG+ L +DLINEMCRFGA+E+H V+AF+GG+A
Sbjct: 448 PGQFDGGMDEDISRLKTTALSLLTDLGCNGAVLPDDLINEMCRFGASEIHVVSAFVGGIA 507

Query: 446 SQEVIKVV 453
           SQEVIK+V
Sbjct: 508 SQEVIKLV 515

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220442|ref|NP_172010.1| amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] gi|1168609|sp|P42744.1|ULA1_ARATH RecName: Full=NEDD8-activating enzyme E1 regulatory subunit; AltName: Full=Auxin-resistance protein AXR1 gi|304104|gb|AAB59348.1| ubiquitin-activating enzyme E1 [Arabidopsis thaliana] gi|2388579|gb|AAB71460.1| Match to Arabidopsis AXR1 (gb|ATHAXR1122) [Arabidopsis thaliana] gi|15215702|gb|AAK91397.1| At1g05180/YUP8H12_21 [Arabidopsis thaliana] gi|332189679|gb|AEE27800.1| amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] gi|448755|prf||1917337A ubiquitin-activating enzyme E1

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/488 (67%), Positives = 388/488 (79%), Gaps = 40/488 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LRIWGE GQAALE+AS+CLLNCGPTGSE LKNLVLGG+GSITV+DGSKV+ GDLGNNFM+
Sbjct: 28  LRIWGEVGQAALEEASICLLNCGPTGSEALKNLVLGGVGSITVVDGSKVQFGDLGNNFMV 87

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           D   VG+SKAKSVCAFLQELND+V AKFIEE P+ LI  NP FFSQFTLV+ATQL E+ M
Sbjct: 88  DAKSVGQSKAKSVCAFLQELNDSVNAKFIEENPDTLITTNPSFFSQFTLVIATQLVEDSM 147

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           +KLDRICR+ANV L+  RSYGL GFVRISVKEH +++SKPDHFLDDLRLNNPWPEL+ F 
Sbjct: 148 LKLDRICRDANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLNNPWPELKSFV 207

Query: 186 ETFDLNVPDP-VAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAID 244
           ET DLNV +P  AHKH PYVVIL+KM+EEW  SH G+LPSTREEK+EFK+L+KSKMV+ D
Sbjct: 208 ETIDLNVSEPAAAHKHIPYVVILVKMAEEWAQSHSGNLPSTREEKKEFKDLVKSKMVSTD 267

Query: 245 EDNYKEAIEASFKVFAPPGIKLALSKVLQ------SADSSFFPFSIAIGRPWIF------ 292
           EDNYKEAIEA+FKVFAP GI   + K++       +++SS F   +A  + ++       
Sbjct: 268 EDNYKEAIEAAFKVFAPRGISSEVQKLINDSCAEVNSNSSAFWVMVAALKEFVLNEGGGE 327

Query: 293 ---------------------------AEADCLAIEQRVRNNLKKLGREPESISKATIKS 325
                                      AEAD L IE+RV+N LKK+GR+P SI K TIKS
Sbjct: 328 APLEGSIPDMTSSTEHYINLQKIYLAKAEADFLVIEERVKNILKKIGRDPSSIPKPTIKS 387

Query: 326 FCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNY 385
           FC+NARKLK+CRYR++EDEF NPSV +IQKYL DEDYS AMGFYILLRA DRFAANYN +
Sbjct: 388 FCKNARKLKLCRYRMVEDEFRNPSVTEIQKYLADEDYSGAMGFYILLRAADRFAANYNKF 447

Query: 386 PGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVA 445
           PG+FDG MDEDISRLKTTA+S+L DLGCNGS L +DLI+EMCRFGA+E+H V+AF+GG+A
Sbjct: 448 PGQFDGGMDEDISRLKTTALSLLTDLGCNGSVLPDDLIHEMCRFGASEIHVVSAFVGGIA 507

Query: 446 SQEVIKVV 453
           SQEVIK+V
Sbjct: 508 SQEVIKLV 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2207220	540	AXR1 "AUXIN RESISTANT 1" [Arab	0.592	0.5	0.708	8.8e-171
TAIR|locus:2062571	523	AXL "AXR1-like" [Arabidopsis t	0.583	0.508	0.680	4.2e-158
UNIPROTKB|E1B8X4	534	NAE1 "Uncharacterized protein"	0.684	0.584	0.384	7.2e-86
UNIPROTKB|F1P442	535	NAE1 "NEDD8-activating enzyme	0.543	0.463	0.444	1.9e-85
UNIPROTKB|E2RE24	534	NAE1 "Uncharacterized protein"	0.690	0.589	0.380	6.4e-85
UNIPROTKB|Q5ZIE6	535	NAE1 "NEDD8-activating enzyme	0.543	0.463	0.440	1e-84
MGI|MGI:2384561	534	Nae1 "NEDD8 activating enzyme	0.684	0.584	0.384	1.3e-84
UNIPROTKB|Q13564	534	NAE1 "NEDD8-activating enzyme	0.684	0.584	0.384	4.5e-84
RGD|619945	534	Nae1 "NEDD8 activating enzyme	0.684	0.584	0.378	9.3e-84
UNIPROTKB|Q9Z1A5	534	Nae1 "NEDD8-activating enzyme	0.684	0.584	0.378	9.3e-84

TAIR|locus:2207220 AXR1 "AUXIN RESISTANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1021 (364.5 bits), Expect = 8.8e-171, Sum P(2) = 8.8e-171
 Identities = 192/271 (70%), Positives = 220/271 (81%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LRIWGE GQAALE+AS+CLLNCGPTGSE LKNLVLGG+GSITV+DGSKV+ GDLGNNFM+
Sbjct:    28 LRIWGEVGQAALEEASICLLNCGPTGSEALKNLVLGGVGSITVVDGSKVQFGDLGNNFMV 87

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             D   VG+SKAKSVCAFLQELND+V AKFIEE P+ LI  NP FFSQFTLV+ATQL E+ M
Sbjct:    88 DAKSVGQSKAKSVCAFLQELNDSVNAKFIEENPDTLITTNPSFFSQFTLVIATQLVEDSM 147

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             +KLDRICR+ANV L+  RSYGL GFVRISVKEH +++SKPDHFLDDLRLNNPWPEL+ F 
Sbjct:   148 LKLDRICRDANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLNNPWPELKSFV 207

Query:   186 ETFDLNVPDPVA-HKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAID 244
             ET DLNV +P A HKH PYVVIL+KM+EEW  SH G+LPST              MV+ D
Sbjct:   208 ETIDLNVSEPAAAHKHIPYVVILVKMAEEWAQSHSGNLPSTREEKKEFKDLVKSKMVSTD 267

Query:   245 EDNYKEAIEASFKVFAPPGIKLALSKVLQSA 275
             EDNYKEAIEA+FKVFAP GI   + K++  +
Sbjct:   268 EDNYKEAIEAAFKVFAPRGISSEVQKLINDS 298

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008641 "small protein activating enzyme activity" evidence=ISS;IDA

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010252 "auxin homeostasis" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=IGI;RCA

GO:0006281 "DNA repair" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2062571 AXL "AXR1-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 989 (353.2 bits), Expect = 4.2e-158, Sum P(2) = 4.2e-158
 Identities = 181/266 (68%), Positives = 216/266 (81%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LRIWGE GQ+ALE AS+CLLNCGPTGSE LKNLV+GGIGSIT++DGSKVE+GDLGNNFM+
Sbjct:    12 LRIWGELGQSALETASICLLNCGPTGSEALKNLVIGGIGSITIVDGSKVEIGDLGNNFMV 71

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             D   VG+S+AK+VC FLQELND+VKA F+EE P+ LI  +P FFSQFTLV+ATQL E+ M
Sbjct:    72 DAKSVGQSRAKTVCGFLQELNDSVKANFVEENPDTLISTDPSFFSQFTLVIATQLVEDSM 131

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             +KLDRICREANVML+ ARSYGLTGFVRISVKEHT +E+KPDH LDDLRLN+PWPEL+ + 
Sbjct:   132 VKLDRICREANVMLVLARSYGLTGFVRISVKEHTAIETKPDHSLDDLRLNSPWPELKSYV 191

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAIDE 245
             E+ DLNV +P AHKH PYVVIL+K++EEW   H G+LPST              MV+ DE
Sbjct:   192 ESIDLNVEEPAAHKHIPYVVILVKVAEEWAQHHSGNLPSTREEKNEFKDLVKSKMVSADE 251

Query:   246 DNYKEAIEASFKVFAPPGIKLALSKV 271
             +NYKEA+ A+FKVFAP GI   +  +
Sbjct:   252 ENYKEALLAAFKVFAPTGISQEIQDI 277

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009791 "post-embryonic development" evidence=IMP

GO:0010252 "auxin homeostasis" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=IGI;RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

UNIPROTKB|E1B8X4 NAE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 583 (210.3 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
 Identities = 123/320 (38%), Positives = 186/320 (58%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct:    17 LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 76

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
               S +G+++A++   FLQELN+ V   F+EE PE L++ +P FF +FT+VVATQL E  +
Sbjct:    77 QRSSIGKNRAQAAMEFLQELNNDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLSESTL 136

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct:   137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
             +++DL+  +   H HTP++VI+ K   +W +   G +P T              ++    
Sbjct:   197 QSYDLDHMEKKDHSHTPWIVIVAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 256

Query:   244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLA 299
                 DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct:   257 GTPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPTFWILARALKEF 314

Query:   300 IEQRVRNNLKKLGREPESIS 319
             + +  + NL   G  P+ I+
Sbjct:   315 VAKEGQGNLPVRGTIPDMIA 334

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019781 "NEDD8 activating enzyme activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1P442 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Gallus gallus (taxid:9031)]

 Score = 584 (210.6 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
 Identities = 113/254 (44%), Positives = 166/254 (65%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LR+WG+ GQ ALE A VC++N   TG+E LKNLVL GIGS T++DG++V   D+GNNF L
Sbjct:    18 LRLWGDHGQEALESAHVCVINATATGTEILKNLVLPGIGSFTIVDGNRVSGEDVGNNFFL 77

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
              +S +G+S+A+S    LQELN+ V   F+EE PE L++ +P FF++F LVVATQL E  +
Sbjct:    78 QKSHIGQSRAQSATELLQELNNDVSGNFVEESPETLLDNDPSFFNRFNLVVATQLSESTV 137

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++L  +   +N+ L+  R+YGL G++RI +KEH VVES PD+ L+DLRL+ P+PEL +  
Sbjct:   138 LRLAELLWNSNIPLLICRTYGLVGYMRIIIKEHPVVESHPDNALEDLRLDKPFPELTEHI 197

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
             +++DL+  D   H HTP++VI+ K   +W N     LP +              ++    
Sbjct:   198 QSYDLDHMDKKDHSHTPWIVIVAKYLTKWFNEKSDQLPKSYKEKEAFRQLIRQGILKNEN 257

Query:   244 ----DEDNYKEAIE 253
                 DE+N++EAI+
Sbjct:   258 GTPEDEENFEEAIK 271

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E2RE24 NAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 583 (210.3 bits), Expect = 6.4e-85, Sum P(2) = 6.4e-85
 Identities = 123/323 (38%), Positives = 188/323 (58%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct:    17 LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 76

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
               S +G+++A++   FLQELN+ V   F+EE PE L++ +P FF +FT+VVATQL E  +
Sbjct:    77 QRSSIGKNRAQAAMEFLQELNNDVSGNFVEESPENLLDNDPSFFCRFTIVVATQLPESTL 136

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct:   137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
             +++DL+  +   H HTP++VI+ K   +W +   G +P T              ++    
Sbjct:   197 QSYDLDRMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 256

Query:   244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLA 299
                 DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct:   257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDHCINITKQTPSFWILARALKEF 314

Query:   300 IEQRVRNNLKKLGREPESISKAT 322
             + +  + NL   G  P+ I+ ++
Sbjct:   315 VAKEGQGNLPVRGTIPDMIADSS 337

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019781 "NEDD8 activating enzyme activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5ZIE6 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Gallus gallus (taxid:9031)]

 Score = 576 (207.8 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
 Identities = 112/254 (44%), Positives = 165/254 (64%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LR+WG+ GQ ALE A VC++N   TG+E LKNLVL GIGS T++DG++V   D+GNNF L
Sbjct:    18 LRLWGDHGQEALESAHVCVINATATGTEILKNLVLPGIGSFTIVDGNRVSGEDVGNNFFL 77

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
              +S +G+S+A+S    LQELN+ V   F+EE PE L++ +P FF++F LVVATQL E  +
Sbjct:    78 QKSHIGQSRAQSATELLQELNNDVSGNFVEESPETLLDNDPSFFNRFNLVVATQLSESTV 137

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++L  +   +N+ L+  R+YGL G++RI +KEH VVES PD+ L+DLRL+  +PEL +  
Sbjct:   138 LRLAELLWNSNIPLLICRTYGLVGYMRIIIKEHPVVESHPDNALEDLRLDKQFPELTEHI 197

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
             +++DL+  D   H HTP++VI+ K   +W N     LP +              ++    
Sbjct:   198 QSYDLDHMDKKDHSHTPWIVIVAKYLTKWFNEKSDQLPKSYKEKEAFRQLIRQGILKNEN 257

Query:   244 ----DEDNYKEAIE 253
                 DE+N++EAI+
Sbjct:   258 GTPEDEENFEEAIK 271

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

MGI|MGI:2384561 Nae1 "NEDD8 activating enzyme E1 subunit 1" [Mus musculus (taxid:10090)]

 Score = 579 (208.9 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 123/320 (38%), Positives = 185/320 (57%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG+ V   D GNNF L
Sbjct:    17 LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNLVSGEDAGNNFFL 76

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
              +S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E  +
Sbjct:    77 QKSSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLLESTL 136

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct:   137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHL 196

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
             +++DL+  +   H HTP++VI+ K   +W N   G +P +              ++    
Sbjct:   197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYNETNGRIPKSYKEKEDFRDLIRQGILKNEN 256

Query:   244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLA 299
                 DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct:   257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPTFWILARALKEF 314

Query:   300 IEQRVRNNLKKLGREPESIS 319
             + +  + NL   G  P+ I+
Sbjct:   315 VAKEGQGNLPVRGTIPDMIA 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006260 "DNA replication" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033314 "mitotic DNA replication checkpoint" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|Q13564 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Homo sapiens (taxid:9606)]

 Score = 577 (208.2 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 123/320 (38%), Positives = 184/320 (57%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct:    17 LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 76

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
               S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct:    77 QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 136

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct:   137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
             +++DL+  +   H HTP++VI+ K   +W +   G +P T              ++    
Sbjct:   197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 256

Query:   244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLA 299
                 DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct:   257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEF 314

Query:   300 IEQRVRNNLKKLGREPESIS 319
             + +  + NL   G  P+ I+
Sbjct:   315 VAKEGQGNLPVRGTIPDMIA 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0033314 "mitotic DNA replication checkpoint" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0019781 "NEDD8 activating enzyme activity" evidence=IDA

GO:0006260 "DNA replication" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

RGD|619945 Nae1 "NEDD8 activating enzyme E1 subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 573 (206.8 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
 Identities = 121/320 (37%), Positives = 186/320 (58%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D+GNNF L
Sbjct:    17 LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDVGNNFFL 76

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
              +  +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E  +
Sbjct:    77 QKCSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLLESTL 136

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct:   137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
             +++DL+  +   H HTP++VI+ K   +W +   G +P +              ++    
Sbjct:   197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKSYKEKEDFRELIRQGILKNEN 256

Query:   244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLA 299
                 DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct:   257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEF 314

Query:   300 IEQRVRNNLKKLGREPESIS 319
             + +  + NL   G  P+ I+
Sbjct:   315 VAKEGQGNLPVRGTIPDMIA 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006260 "DNA replication" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033314 "mitotic DNA replication checkpoint" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0019781 "NEDD8 activating enzyme activity" evidence=ISO

UNIPROTKB|Q9Z1A5 Nae1 "NEDD8-activating enzyme E1 regulatory subunit" [Rattus norvegicus (taxid:10116)]

 Score = 573 (206.8 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
 Identities = 121/320 (37%), Positives = 186/320 (58%)

Query:     6 LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
             LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D+GNNF L
Sbjct:    17 LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDVGNNFFL 76

Query:    66 DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
              +  +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E  +
Sbjct:    77 QKCSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLLESTL 136

Query:   126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct:   137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196

Query:   186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
             +++DL+  +   H HTP++VI+ K   +W +   G +P +              ++    
Sbjct:   197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKSYKEKEDFRELIRQGILKNEN 256

Query:   244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLA 299
                 DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct:   257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEF 314

Query:   300 IEQRVRNNLKKLGREPESIS 319
             + +  + NL   G  P+ I+
Sbjct:   315 VAKEGQGNLPVRGTIPDMIA 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZIE6	ULA1_CHICK	No assigned EC number	0.375	0.9758	0.8317	yes	no
Q8VBW6	ULA1_MOUSE	No assigned EC number	0.3790	0.9758	0.8333	yes	no
Q7SXP2	ULA1_DANRE	No assigned EC number	0.376	0.9671	0.8273	yes	no
Q13564	ULA1_HUMAN	No assigned EC number	0.3634	0.9714	0.8295	yes	no
P42744	ULA1_ARATH	No assigned EC number	0.6762	0.9824	0.8296	yes	no
Q9Z1A5	ULA1_RAT	No assigned EC number	0.3709	0.9758	0.8333	yes	no
Q54JM3	ULA1_DICDI	No assigned EC number	0.3827	0.9714	0.8519	yes	no
Q9VTE9	ULA1_DROME	No assigned EC number	0.3380	0.9473	0.8244	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	1e-152
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	2e-39
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	3e-33
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	2e-20
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	9e-20
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	2e-19
pfam00899	134	pfam00899, ThiF, ThiF family	1e-15
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	3e-15
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	7e-14
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	4e-09
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	6e-09
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	1e-08
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	2e-08
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	2e-08
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	6e-07
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	4e-06
PTZ00245	287	PTZ00245, PTZ00245, ubiquitin activating enzyme; P	6e-06
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	1e-05
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	2e-05
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	5e-05
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	6e-05
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	9e-05
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	1e-04
PRK12475	338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	2e-04
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	3e-04
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	7e-04
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	0.001
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	0.002

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score =  439 bits (1131), Expect = e-152
 Identities = 176/386 (45%), Positives = 237/386 (61%), Gaps = 58/386 (15%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WGE GQAALE A VCLLN   TG+E LKNLVL GIGS T++DGSKV+  DLGNNF L
Sbjct: 7   LRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFL 66

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
           D S +G+S+A++ C  LQELN  V    +EE PEAL++ +P FFSQFT+V+AT L E  +
Sbjct: 67  DASSLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTL 126

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   AN+ L++ RSYGL G++RI +KEHT+VES PD+ L+DLRL+NP+PELR+ A
Sbjct: 127 LRLADVLWSANIPLLYVRSYGLYGYIRIQLKEHTIVESHPDNALEDLRLDNPFPELREHA 186

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-D 244
           ++ DL+  DP  H HTPY+VILIK  E+W ++H G LPST +EK+EF++L++S M +  D
Sbjct: 187 DSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRDLVRSLMRSNED 246

Query: 245 EDNYKEAIEASFKVFAPPGIKLALSKVLQ-------SADSSFFPFSIAIGRPWIFAEA-- 295
           E+N++EAI+A  K      I  ++ ++         ++ SS F         WI A A  
Sbjct: 247 EENFEEAIKAVNKALNRTKIPSSVEEIFNDDRCENLTSQSSSF---------WIMARALK 297

Query: 296 ---------------------------------------DCLAIEQRVRNNLKKLGREPE 316
                                                  D   +E+ VR  LK LGR P+
Sbjct: 298 EFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPD 357

Query: 317 SISKATIKSFCRNARKLKVCRYRLLE 342
           SIS   IK FC+NA  L+V R R LE
Sbjct: 358 SISDKEIKLFCKNAAFLRVIRGRSLE 383

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score =  140 bits (355), Expect = 2e-39
 Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 2/151 (1%)

Query: 5   TLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFM 64
            +R+WG++ Q  L  A V ++  G  G+E  KNLVL GI SIT++D   V   DLG+NF 
Sbjct: 5   QIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFF 64

Query: 65  LDESCV--GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGE 122
           LD      G ++A +   FLQELN  VK   +EE   +       +  +FTLV+AT+   
Sbjct: 65  LDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENY 124

Query: 123 EKMIKLDRICREANVMLIFARSYGLTGFVRI 153
           E+  K++ +CR+ ++  I   +YGL G+   
Sbjct: 125 ERTAKVNDVCRKHHIPFISCATYGLIGYAFF 155

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score =  123 bits (312), Expect = 3e-33
 Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 3/146 (2%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           +R+WG + Q  L  A + L+     G+E  KNLVL GIGS+T++D   V   DLG  F++
Sbjct: 8   IRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLI 67

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
               +G+++A++    L+ LN  VK        + + E    FFSQF +VVAT+L   ++
Sbjct: 68  PAEDLGQNRAEASLERLRALNPRVKVSVDT---DDISEKPEEFFSQFDVVVATELSRAEL 124

Query: 126 IKLDRICREANVMLIFARSYGLTGFV 151
           +K++ +CR+  V       +GL GFV
Sbjct: 125 VKINELCRKLGVKFYATGVHGLFGFV 150

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 17  LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK 76
           L+K++V +   G  G E  KNL+L G+ S+T+ D       DL + F L E  +G+++A+
Sbjct: 17  LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAE 76

Query: 77  SVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN 136
           +  A L ELN  V              +      +F +VV T    E  +K++  C    
Sbjct: 77  ASQARLAELNPYVPVTVSTG------PLTTDELLKFQVVVLTDASLEDQLKINEFCHSPG 130

Query: 137 VMLIFARSYGLTGFV 151
           +  I A + GL G +
Sbjct: 131 IKFISADTRGLFGSI 145

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 85.0 bits (211), Expect = 9e-20
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 22  VCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81
           V L+  G  GSE   NL   G+G IT+ID   VE+ +L   F+  ++ +G+ KA+     
Sbjct: 2   VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARR 61

Query: 82  LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIF 141
           L ELN  V    + E        +  F     LV+           L+R C+E  + +I 
Sbjct: 62  LNELNPGVNVTAVPEGISEDNLDD--FLDGVDLVIDAIDNIAVRRALNRACKELGIPVID 119

Query: 142 ARSYGLTGFVRI 153
           A   GL G +++
Sbjct: 120 AGGLGLGGDIQV 131

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 5   TLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFM 64
            L   G +GQ  L+ + V ++  G  GS   K L L G+G +T++D   VE+ +L   F+
Sbjct: 16  LLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFL 75

Query: 65  LDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEK 124
             E+ VG+ KA+     L++LN  V+     E  +          +QF +V+      E 
Sbjct: 76  FTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEE--LIAQFDVVLDCTDNFET 133

Query: 125 MIKLDRICREANVMLIFARSYGLTGFVRI 153
              ++  C +  + L+   + G  G V +
Sbjct: 134 RYLINDACVKLGIPLVHGGAIGFEGQVTV 162

Length = 254

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 19  KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 78
            + V ++  G  GS   + L   G+G +T++D   VE+ +L    +  ES +G+ KA+  
Sbjct: 1   SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVA 60

Query: 79  CAFLQELNDAVKAKFIEEYPEAL-IEMNPPFFSQFTLVV-ATQLGEEKMIKLDRICREAN 136
              L+ +N  V+   +E YPE L  E          LVV A      + + L+  C +  
Sbjct: 61  KERLRAINPDVE---VEAYPERLTPENLEELLKGVDLVVDALDNFAARYL-LNDACVKRG 116

Query: 137 VMLIFARSYGLTGFVR 152
           + LI A + G  G V 
Sbjct: 117 IPLISAGALGFDGQVT 132

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           L + G++    + K++V +   G  G E  KNLVL G+ S+T+ D  K +  DL +NF L
Sbjct: 11  LYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFL 70

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
            E  VG ++A++V   L ELN  V               N  F  +F  VV T++     
Sbjct: 71  SEDDVGRNRAEAVVKKLAELNPYVHVSSSSV------PFNEEFLDKFQCVVLTEMSLPLQ 124

Query: 126 IKLDRICRE--ANVMLIFARSYGLTGFV 151
            +++  C      +  I A   GL G +
Sbjct: 125 KEINDFCHSQCPPIAFISADVRGLFGSL 152

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score = 70.2 bits (173), Expect = 7e-14
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 9/146 (6%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           L   GE+GQ  L+ A V ++  G  GS   + L   G+G + ++D   VE+ +L    + 
Sbjct: 8   LPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILH 67

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVV-ATQLGEE 123
            E+ VG+ KA++    L+ +N  V+   IE Y E L   N     + + LV+  T     
Sbjct: 68  TEADVGQPKAEAAAERLRAINPDVE---IEAYNERLDAENAEELIAGYDLVLDCTDNFAT 124

Query: 124 KMIKLDRICREANVMLIFA---RSYG 146
           + + ++  C +    L+        G
Sbjct: 125 RYL-INDACVKLGKPLVSGAVLGFEG 149

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 5/140 (3%)

Query: 22  VCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 81
           V ++  G  G E LKNLVL G G I +ID   +++ +L   F+  +  VG+SKA+     
Sbjct: 2   VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEA 61

Query: 82  LQELNDAVKAKFIEEYPEAL--IEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVML 139
           +   N  VK   I  Y   +   + N  FF QF LV            ++++C  A+V L
Sbjct: 62  VLSFNPNVK---IVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPL 118

Query: 140 IFARSYGLTGFVRISVKEHT 159
           I + + G  G V++  K  T
Sbjct: 119 IESGTTGFLGQVQVIKKGKT 138

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 57.2 bits (138), Expect = 6e-09
 Identities = 30/86 (34%), Positives = 44/86 (51%)

Query: 5  TLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFM 64
           L   G+QGQ +L  A V ++  G  GS  L  L   G+G IT+ID   V++ +L    +
Sbjct: 14 MLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVI 73

Query: 65 LDESCVGESKAKSVCAFLQELNDAVK 90
             + VG+ KA+S    +  LN  VK
Sbjct: 74 HSTAGVGQPKAESAREAMLALNPDVK 99

Length = 355

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 10  GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC 69
           GE+GQ  L  + V ++  G  GS     L   G+G+I ++D   V++ +L    +  E  
Sbjct: 12  GEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEED 71

Query: 70  VGESKAKSVCAFLQELN-----DAVKAKFIEEYPEALIEMNPPFFSQFTLVV-ATQLGEE 123
           VG  K +     L+ELN      A+K +   E  E LI           LV+  T     
Sbjct: 72  VGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLIN-------NVDLVLDCTDNFAT 124

Query: 124 KMIKLDRICREANVMLIFARSYGLTG 149
           + + ++  C      LI A   G  G
Sbjct: 125 RYL-INDACVALGTPLISAAVVGFGG 149

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 35/139 (25%), Positives = 57/139 (41%)

Query: 21  SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80
            V L+  G  G E LKNL L G G I VID   ++V +L   F+     +G  K++    
Sbjct: 1   KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE 60

Query: 81  FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI 140
            + + N   K    +       + N  FF QF ++V           ++ +     V LI
Sbjct: 61  AVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLI 120

Query: 141 FARSYGLTGFVRISVKEHT 159
            + + G  G  ++ +   T
Sbjct: 121 ESGTEGFKGNAQVILPGMT 139

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 21  SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 80
            + ++  G  G E LKNL L G  +I VID   ++V +L   F+  E  +G+ KA+    
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAK 60

Query: 81  FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVA 117
           F+ +    V    +  +   + + +  F+ QF +++ 
Sbjct: 61  FVNDRVPGVN---VTPHFGKIQDKDEEFYRQFNIIIC 94

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 12/146 (8%)

Query: 13  GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGE 72
           GQ AL+ + V ++  G  G    + L   G+G++T++D   V + +L    +  ++ +G+
Sbjct: 18  GQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQ 77

Query: 73  SKAKSVCAFLQELN-----DAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIK 127
            K +S    L ++N     + + AK  +    ALI        +  +VV      E   +
Sbjct: 78  PKVESAKDALTQINPHIAINPINAKLDDAELAALIA-------EHDIVVDCTDNVEVRNQ 130

Query: 128 LDRICREANVMLIFARSYGLTGFVRI 153
           L+R C  A V L+   +  + G V +
Sbjct: 131 LNRQCFAAKVPLVSGAAIRMEGQVSV 156

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 9/148 (6%)

Query: 10  GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC 69
           GE+GQ  L +  V ++  G  G+   + LV  G+G +T++D   VE  +L    +  ES 
Sbjct: 15  GEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESD 74

Query: 70  VGESKAKSVCA--FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV-ATQLGEEKMI 126
           V  +  K+V A   L+E+N  V+ + I +  +   E      +   L++ AT   E + I
Sbjct: 75  VKNNLPKAVAAKKRLEEINSDVRVEAIVQ--DVTAEELEELVTGVDLIIDATDNFETRFI 132

Query: 127 KLDRICREANVMLIFA---RSYGLTGFV 151
             D   ++  +  I+     SYGL+  +
Sbjct: 133 VND-AAQKYGIPWIYGACVGSYGLSYTI 159

Length = 339

>gnl|CDD|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 6  LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
          +R+WG+  Q  L   SV L       +E  KNLVL G+ ++ V D   V   D+  N+++
Sbjct: 13 IRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLM 72

Query: 66 DESCVGESKAKSVCAFLQELNDAV 89
               G   A+++ A LQ LN  V
Sbjct: 73 QGEAGGTRGARALGA-LQRLNPHV 95

Length = 287

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 10  GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC 69
           GE+GQ  L +A V L+  G  GS     L   G+G++ ++D   V+  +L    +  E  
Sbjct: 126 GEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDR 185

Query: 70  VGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMN 105
           VG+ K  S    L  LN  V+   +E   E +   N
Sbjct: 186 VGQPKVDSAAQRLAALNPDVQ---VEAVQERVTSDN 218

Length = 376

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 10  GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC 69
           G  GQ  L+ A V ++  G  GS TL  L   G+G++ +++   V+  +L    +  +S 
Sbjct: 33  GVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSD 92

Query: 70  VGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           VG SKA+S    + E+N  V  +  E   +    +    FSQ+ L++
Sbjct: 93  VGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVE--LFSQYDLIL 137

Length = 392

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 8   IWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNN 62
           ++G+  Q  L+  ++ L+ CG  G E LKN  L G+     G ITV D   +E  +L   
Sbjct: 408 VFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQ 467

Query: 63  FMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-----PEALIEMNPPFFSQFTLVVA 117
           F+     +G+ K+ +      ++N  +K   I+ +     PE     N  F+ +  +V+ 
Sbjct: 468 FLFRPHHIGKPKSYTAADATLKINPQIK---IDAHQNRVGPETETIFNDEFYEKLDVVIN 524

Query: 118 TQLGEEKMIKLDRIC 132
                E    +D  C
Sbjct: 525 ALDNVEARRYVDSRC 539

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 22/77 (28%), Positives = 39/77 (50%)

Query: 9   WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDES 68
           +G + Q  L  A V ++  G  G   +++L   G+G+IT+ID   V+V ++    +   S
Sbjct: 31  FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGAS 90

Query: 69  CVGESKAKSVCAFLQEL 85
            VG  K +     L+E+
Sbjct: 91  DVGRPKVEVAAERLKEI 107

Length = 370

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)

Query: 334 KVCRYRLLEDEFSNPS--VPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDG 391
           K   ++ L ++  +P   + D  K     +   A       +A+D+F   Y+  P   + 
Sbjct: 253 KTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAF------QALDQFQEKYSRKP---NV 303

Query: 392 PMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIK 451
              +D   L   A S+   L      +   L++ +       L  +AA +GGV SQEV+K
Sbjct: 304 GCQQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLK 363

Query: 452 VV 453
            V
Sbjct: 364 AV 365

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           + I+G +GQ  L+KA V ++  G  GS     L   G+G I +ID    E+ +L    + 
Sbjct: 14  IMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILH 73

Query: 66  DESCVGE-SKAKSVCAFLQELNDAVKAKFIEEYPEALIEMN 105
            E  +G+  K  S    L+  N  +K   IE +   L E N
Sbjct: 74  WEEDLGKNPKPLSAKWKLERFNSDIK---IETFVGRLSEEN 111

Length = 231

>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 11/146 (7%)

Query: 10  GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC 69
           GE+GQ  + +  V ++  G  G+   + LV  GIG +T+ D   VE  +L    +  E  
Sbjct: 15  GEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEED 74

Query: 70  VGESKAKSVCA--FLQELNDAVKAKFIEEY-PEALIEMNPPFFSQFTLVV-ATQLGEEKM 125
             + K K++ A   L+++N  V+   I     +  +E       +  L++ AT   + ++
Sbjct: 75  AKQKKPKAIAAKEHLRKINSEVE---IVPVVTDVTVEELEELVKEVDLIIDATDNFDTRL 131

Query: 126 IKLDRICREANVMLIFAR---SYGLT 148
           + ++ + ++ N+  I+     SYG+T
Sbjct: 132 L-INDLSQKYNIPWIYGGCVGSYGVT 156

Length = 338

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 24/93 (25%), Positives = 46/93 (49%)

Query: 5   TLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFM 64
           T R++GE+       A +C++  G  GS   + L   GIG+IT+ID   V V +      
Sbjct: 16  TARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIH 75

Query: 65  LDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 97
                VG +KA+ +   ++++N   +   ++++
Sbjct: 76  ALRDNVGLAKAEVMAERIRQINPECRVTVVDDF 108

Length = 268

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 14  QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGN--NFMLDESCVG 71
              L+KA V +   G  GS     L   G+G++ ++D   VE  +L N   + + +  +G
Sbjct: 23  LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNL-NRQQYFISQ--IG 79

Query: 72  ESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVV 116
             K +++   L E+N  V+   IE + E + E N    F    +VV
Sbjct: 80  MPKVEALKENLLEINPFVE---IEAHNEKIDEDNIEELFKDCDIVV 122

Length = 212

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 13  GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGE 72
           GQ  L+ A V ++  G  G    + L   G+G++T++D   V + +L    + D++ +G+
Sbjct: 26  GQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85

Query: 73  SKAKSVCAFLQELN-----DAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
            K +S  A L  +N     + + A+  ++   ALI       +   LV+
Sbjct: 86  PKVESARAALARINPHIAIETINARLDDDELAALI-------AGHDLVL 127

Length = 245

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 11/115 (9%)

Query: 7   RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLD 66
           R++GE G   L++A VC++  G  GS  ++ L   GIG IT+ID   V V +        
Sbjct: 18  RLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHAL 77

Query: 67  ESCVGESKAKSVCAFLQELN-----DAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
              +G+ K + +   ++++N      A+     EE  E L          F  V+
Sbjct: 78  LGDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDL------LSKGFDYVI 126

Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	100.0
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
KOG2014	331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
PRK08223	287	hypothetical protein; Validated	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK07411	390	hypothetical protein; Validated	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	99.97
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	99.97
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	99.97
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.97
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	99.97
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	99.97
PRK14852	989	hypothetical protein; Provisional	99.97
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.97
PRK14851	679	hypothetical protein; Provisional	99.96
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.96
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.96
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.96
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	99.96
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.95
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.95
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	99.94
PRK07877	722	hypothetical protein; Provisional	99.94
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.93
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	99.93
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.92
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.92
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.92
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	99.91
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.91
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.91
PRK06153	393	hypothetical protein; Provisional	99.88
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.85
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	99.8
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	99.69
KOG2337	669	consensus Ubiquitin activating E1 enzyme-like prot	99.47
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.24
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.69
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.69
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.58
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.57
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.53
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.52
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.2
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.15
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.04
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.58
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.44
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.41
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.38
PRK04148	134	hypothetical protein; Provisional	96.37
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	96.33
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.25
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.23
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.19
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.18
PRK10637	457	cysG siroheme synthase; Provisional	96.08
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.94
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.89
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.87
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.83
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.63
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.61
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.61
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.56
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.55
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.31
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.21
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.06
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	94.99
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.97
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.95
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.86
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.85
PRK09496	453	trkA potassium transporter peripheral membrane com	94.81
PLN00203	519	glutamyl-tRNA reductase	94.79
PRK09496	453	trkA potassium transporter peripheral membrane com	94.72
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.64
PLN02602	350	lactate dehydrogenase	94.56
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.47
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.47
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	94.41
PTZ00117	319	malate dehydrogenase; Provisional	94.29
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.2
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	94.07
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.06
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.96
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.85
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.8
PRK00811	283	spermidine synthase; Provisional	93.78
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.72
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.64
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	93.61
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	93.6
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	93.25
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	93.21
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.11
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.96
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	92.95
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	92.9
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	92.88
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	92.87
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.77
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	92.77
PRK06141	314	ornithine cyclodeaminase; Validated	92.73
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	92.68
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.67
PLN02206	442	UDP-glucuronate decarboxylase	92.64
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	92.55
PRK07417	279	arogenate dehydrogenase; Reviewed	92.52
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.47
PRK08618	325	ornithine cyclodeaminase; Validated	92.42
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.34
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	92.33
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.29
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	92.27
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.15
PRK07340	304	ornithine cyclodeaminase; Validated	92.01
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	91.96
PRK07680	273	late competence protein ComER; Validated	91.95
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	91.94
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	91.89
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	91.86
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	91.82
PRK06197	306	short chain dehydrogenase; Provisional	91.81
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	91.8
PRK00048	257	dihydrodipicolinate reductase; Provisional	91.72
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.69
PRK10669	558	putative cation:proton antiport protein; Provision	91.67
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	91.62
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	91.48
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	91.4
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	91.32
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	91.25
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	91.24
PLN00016	378	RNA-binding protein; Provisional	91.17
PRK10537	393	voltage-gated potassium channel; Provisional	91.13
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	91.1
PTZ00325	321	malate dehydrogenase; Provisional	91.08
PRK05442	326	malate dehydrogenase; Provisional	91.06
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	91.02
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	90.94
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	90.85
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.83
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	90.81
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	90.8
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	90.78
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	90.71
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.7
PRK08291	330	ectoine utilization protein EutC; Validated	90.67
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	90.65
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	90.51
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	90.47
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	90.45
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	90.35
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	90.33
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	90.29
PLN02166	436	dTDP-glucose 4,6-dehydratase	90.24
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	90.06
PRK13304	265	L-aspartate dehydrogenase; Reviewed	90.03
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	90.02
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	90.0
PTZ00431	260	pyrroline carboxylate reductase; Provisional	89.97
PLN02427	386	UDP-apiose/xylose synthase	89.95
PRK09330	384	cell division protein FtsZ; Validated	89.82
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	89.76
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.74
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.72
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	89.7
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	89.58
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	89.45
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	89.37
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	89.33
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.32
PRK14982	340	acyl-ACP reductase; Provisional	89.32
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	89.29
PRK13403	335	ketol-acid reductoisomerase; Provisional	89.29
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	89.25
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	89.19
PLN00106	323	malate dehydrogenase	89.18
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.17
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	89.02
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	89.01
PRK13018	378	cell division protein FtsZ; Provisional	88.92
PRK06545	359	prephenate dehydrogenase; Validated	88.91
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	88.87
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	88.86
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	88.81
PRK15059	292	tartronate semialdehyde reductase; Provisional	88.81
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	88.8
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	88.75
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	88.68
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	88.6
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	88.57
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	88.27
PRK05225	487	ketol-acid reductoisomerase; Validated	88.24
PRK09242	257	tropinone reductase; Provisional	88.02
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	87.99
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.92
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	87.75
PLN02366	308	spermidine synthase	87.63
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	87.6
PLN02240	352	UDP-glucose 4-epimerase	87.57
PLN02688	266	pyrroline-5-carboxylate reductase	87.49
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	87.46
PLN02928	347	oxidoreductase family protein	87.41
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	87.36
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	87.24
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.23
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	87.05
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	87.01
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	86.9
PRK12367	245	short chain dehydrogenase; Provisional	86.87
PRK08655	437	prephenate dehydrogenase; Provisional	86.85
PLN03209	576	translocon at the inner envelope of chloroplast su	86.84
PRK01581	374	speE spermidine synthase; Validated	86.82
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	86.75
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	86.72
PRK08306	296	dipicolinate synthase subunit A; Reviewed	86.58
PLN02572	442	UDP-sulfoquinovose synthase	86.49
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	86.48
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	86.47
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	86.41
PRK13243	333	glyoxylate reductase; Reviewed	86.4
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	86.39
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.38
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	86.35
PRK06046	326	alanine dehydrogenase; Validated	86.34
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	86.25
PRK05854	313	short chain dehydrogenase; Provisional	86.24
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	86.12
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	86.11
PRK08818	370	prephenate dehydrogenase; Provisional	85.99
PRK06199	379	ornithine cyclodeaminase; Validated	85.94
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	85.89
PRK08213	259	gluconate 5-dehydrogenase; Provisional	85.85
PRK06436	303	glycerate dehydrogenase; Provisional	85.81
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	85.77
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	85.77
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	85.67
PRK05479	330	ketol-acid reductoisomerase; Provisional	85.56
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.55
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	85.45
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	85.39
PRK12480	330	D-lactate dehydrogenase; Provisional	85.38
COG0281	432	SfcA Malic enzyme [Energy production and conversio	85.3
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.3
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	85.21
PRK15076	431	alpha-galactosidase; Provisional	85.18
PLN00112	444	malate dehydrogenase (NADP); Provisional	85.1
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.09
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	85.06
PF02134	67	UBACT: Repeat in ubiquitin-activating (UBA) protei	85.04
PRK07063	260	short chain dehydrogenase; Provisional	84.82
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	84.76
PRK07062	265	short chain dehydrogenase; Provisional	84.76
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	84.73
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.72
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	84.6
PRK06223	307	malate dehydrogenase; Reviewed	84.55
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	84.53
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	84.45
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.45
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	84.44
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	84.4
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	84.39
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	84.32
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	84.13
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	84.13
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	84.07
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.96
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	83.94
PRK06184	502	hypothetical protein; Provisional	83.92
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	83.72
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	83.58
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	83.46
PRK09126	392	hypothetical protein; Provisional	83.4
TIGR00036	266	dapB dihydrodipicolinate reductase.	83.33
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	83.31
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	83.31
PRK00536	262	speE spermidine synthase; Provisional	83.29
PRK13303	265	L-aspartate dehydrogenase; Provisional	83.26
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	83.13
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	83.04
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.03
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	83.02
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	82.93
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	82.92
PRK05866	293	short chain dehydrogenase; Provisional	82.86
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	82.84
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	82.84
PRK08264	238	short chain dehydrogenase; Validated	82.8
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	82.71
PRK12779	944	putative bifunctional glutamate synthase subunit b	82.65
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	82.63
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	82.61
PRK06185	407	hypothetical protein; Provisional	82.59
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	82.58
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	82.57
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	82.52
PRK08251	248	short chain dehydrogenase; Provisional	82.46
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	82.25
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	82.21
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	82.03
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	82.03
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	82.01
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	81.98
PRK06139	330	short chain dehydrogenase; Provisional	81.93
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	81.9
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	81.89
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	81.83
PRK07791	286	short chain dehydrogenase; Provisional	81.81
PRK07236	386	hypothetical protein; Provisional	81.78
PRK07576	264	short chain dehydrogenase; Provisional	81.77
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	81.7
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	81.69
PTZ00188	506	adrenodoxin reductase; Provisional	81.61
PRK06270	341	homoserine dehydrogenase; Provisional	81.55
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	81.53
PRK06523	260	short chain dehydrogenase; Provisional	81.44
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	81.36
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	81.31
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	81.28
PRK12939	250	short chain dehydrogenase; Provisional	81.15
PRK06398	258	aldose dehydrogenase; Validated	81.11
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	81.1
PRK06194	287	hypothetical protein; Provisional	81.08
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	81.08
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	80.96
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	80.92
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	80.91
PLN02494	477	adenosylhomocysteinase	80.78
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	80.66
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.65
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	80.59
PRK07478	254	short chain dehydrogenase; Provisional	80.48
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	80.43
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	80.37
PTZ00075	476	Adenosylhomocysteinase; Provisional	80.36
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	80.29
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	80.22
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.21
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	80.2
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	80.14
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	80.07
CHL00194	317	ycf39 Ycf39; Provisional	80.07
PRK08013	400	oxidoreductase; Provisional	80.06
PLN02653	340	GDP-mannose 4,6-dehydratase	80.05

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-103  Score=764.52  Aligned_cols=450  Identities=56%  Similarity=0.945  Sum_probs=434.2

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      ||||+|+||.+||..|..++||++|||++|||++||||++|||+||++|+..|+.+|++.|||+..+++|++||++.++.
T Consensus        10 YDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~   89 (523)
T KOG2016|consen   10 YDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEF   89 (523)
T ss_pred             HHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCceeE
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV  161 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~  161 (456)
                      |+++||.|..+.+.++|+.+...+++++++|++|+++..+.....++.++||.+++|++.+.++|+.|++++.+.+|+++
T Consensus        90 LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikEH~ii  169 (523)
T KOG2016|consen   90 LQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEHTII  169 (523)
T ss_pred             HHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeeecccc
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc
Q 012768          162 ESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMV  241 (456)
Q Consensus       162 ~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~~  241 (456)
                      ++|||+..+||||++|||+|.+|++++|++.|++..|+|+||+|+++|++++|.+.|.|+.|++.+|+.+|++++..++.
T Consensus       170 eshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk~fkd~i~~~~~  249 (523)
T KOG2016|consen  170 ESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKKEFKDLIRSEMG  249 (523)
T ss_pred             ccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCHHHHHHHHhhccCCCCccHHHHHHHh--------cCCCCchHHHHHhhh-------------------------
Q 012768          242 AIDEDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIGR-------------------------  288 (456)
Q Consensus       242 ~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~--------~~~~~fw~l~~~l~~-------------------------  288 (456)
                      ..|++||+||+++++++|.++.||++++++++        .++..||++++|||.                         
T Consensus       250 ~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~GtlPDM~ssTe~  329 (523)
T KOG2016|consen  250 KADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRGTLPDMTSSTEH  329 (523)
T ss_pred             CCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCCCCCccccCHHH
Confidence            99999999999999999999999999999997        346789999999997                         


Q ss_pred             ------hH-HHHHhhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcccceEeeccccccccCCCChhhHhhhhcccc
Q 012768          289 ------PW-IFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDED  361 (456)
Q Consensus       289 ------iY-~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~d~~  361 (456)
                            +| .||+.|..+|..+++++++++|+++++|++..++.||+|+..+++++|+++++++. |+..+..++.++++
T Consensus       330 YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~~~~~~~~~~e~  408 (523)
T KOG2016|consen  330 YIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSITELIKYSSNEN  408 (523)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccchhhhhhccccc
Confidence                  99 99999999999999999999999999999999999999999999999999999999 76666667777777


Q ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHH
Q 012768          362 YSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFI  441 (456)
Q Consensus       362 ~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~  441 (456)
                      ++..+.||+++||+++|..++|+|||  +.+.+.|+..++.++..+++++++++..+.++.+.||||++++|+|.|+||+
T Consensus       409 ~~~~~~~~~~lRavdrfl~~~gk~pG--~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~~i~E~cR~gaaElH~VsAfi  486 (523)
T KOG2016|consen  409 YSNEIGFYLLLRAVDRFLKEKGKYPG--EGPVEIDITKLKSIAASLLSELGLDGNAVTDDAIHEICRFGAAELHVVSAFI  486 (523)
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCC--CCccchhhHHHHHHHHHHHHHhccCcccCcHHHHHHHHhcCCchhHHHHHHH
Confidence            76788999999999999999999999  4677899999999999999999998888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 012768          442 GGVASQEVIKVVF  454 (456)
Q Consensus       442 GGiaaQEvIK~i~  454 (456)
                      ||+||||+||+||
T Consensus       487 GGiaaQEvIKLiT  499 (523)
T KOG2016|consen  487 GGIAAQEVIKLIT  499 (523)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999999999997

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=100.00  E-value=4.2e-87  Score=679.49  Aligned_cols=339  Identities=51%  Similarity=0.839  Sum_probs=323.4

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      ||||+||||.+||++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||++|||++.+|+|++||++++++
T Consensus         3 YDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~   82 (425)
T cd01493           3 YDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCEL   82 (425)
T ss_pred             chHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCceeE
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV  161 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~  161 (456)
                      |+++||+|+++++.+.+..+...++++|++||+||+|.++...+..++++|+++++|+|++++.|++|++++++++|+++
T Consensus        83 L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~h~i~  162 (425)
T cd01493          83 LQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKEHTIV  162 (425)
T ss_pred             HHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECCeEEE
Confidence            99999999999988777655544578899999999999998888899999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc
Q 012768          162 ESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMV  241 (456)
Q Consensus       162 ~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~~  241 (456)
                      ++||++..+||||++|||||.+|++++|++.+++..|+|+||+++|++++++|+..|+|.+|+++++|.+|++++.++++
T Consensus       163 et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~~i~~~~~  242 (425)
T cd01493         163 ESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRDLVRSLMR  242 (425)
T ss_pred             ECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            99999989999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             -CCCCCCHHHHHHHHhhccCCCCccHHHHHHHh--------cCCCCchHHHHHhhh------------------------
Q 012768          242 -AIDEDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIGR------------------------  288 (456)
Q Consensus       242 -~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~--------~~~~~fw~l~~~l~~------------------------  288 (456)
                       ..+++||+||+++++++++|+.||++++++|+        ..++.||++++|||.                        
T Consensus       243 ~~~~eeNf~EA~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~  322 (425)
T cd01493         243 SNEDEENFEEAIKAVNKALNRTKIPSSVEEIFNDDRCENLTSQSSSFWIMARALKEFVAEENGLLPLPGTLPDMTADTEK  322 (425)
T ss_pred             cCCCccchHHHHHHHHHhhCCCCCcHHHHHHHhchhcccCCCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHH
Confidence             58899999999999999999999999999996        235779999999998                        


Q ss_pred             ------hH-HHHHhhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcccceEeeccc
Q 012768          289 ------PW-IFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRL  340 (456)
Q Consensus       289 ------iY-~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~~i~~f~~n~~~~~~i~~~s  340 (456)
                            +| +||.+|+++|.++++++++++|++.++|++..++.||||++.++++++++
T Consensus       323 Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~~~  381 (425)
T cd01493         323 YIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGRS  381 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccCCc
Confidence                  88 99999999999999999999999999999999999999999999997754

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-60  Score=493.39  Aligned_cols=357  Identities=23%  Similarity=0.374  Sum_probs=290.3

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768            1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA   80 (456)
Q Consensus         1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~   80 (456)
                      +||||+++.|.++|+||..++|||.|++|+|.||||||+|+||+++||.|...+..+||+.||+++++|||++||++...
T Consensus        19 LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~   98 (1013)
T KOG2012|consen   19 LYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVE   98 (1013)
T ss_pred             hhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCcee
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV  160 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~  160 (456)
                      +|++||++|.|.+++..      .+.+++++|++||.|+.+.....+|+++||+++|.||.+.+.|++|++|+|||++++
T Consensus        99 ~LaeLN~yV~V~v~t~~------~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~eF~  172 (1013)
T KOG2012|consen   99 KLAELNNYVPVVVLTGP------LTEEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGEEFT  172 (1013)
T ss_pred             HHHHhhcceeeEEecCc------ccHHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCCceE
Confidence            99999999999987653      246789999999999999999999999999999999999999999999999999776


Q ss_pred             EecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhc
Q 012768          161 VESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKM  240 (456)
Q Consensus       161 ~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~  240 (456)
                      +......   .     |   +..++.+|+-+         .|++|.++.-.  -+...+|++++       |.++  +||
T Consensus       173 v~D~tGe---e-----P---~t~mI~~Is~d---------~pGvvT~ld~~--rH~lEdGd~V~-------FsEv--eGm  221 (1013)
T KOG2012|consen  173 VLDPTGE---E-----P---LTGMIASISQD---------NPGVVTCLDGA--RHGFEDGDLVT-------FSEV--EGM  221 (1013)
T ss_pred             EeCCCCC---c-----c---hhhHHhhccCC---------CCceEEEecCc--cccCccCCEEE-------EEee--ccc
Confidence            5311110   0     1   12344444322         22222211100  11233454443       4455  788


Q ss_pred             cCCCCCCHHHHHHHHhhccCCCCccHHHHHHHhcCCCCchHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhhCCCCCCCCH
Q 012768          241 VAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISK  320 (456)
Q Consensus       241 ~~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~~~~~~fw~l~~~l~~iY~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~  320 (456)
                      .++|+..       +.++.                          ++++|++.+.|+.                  ++.+
T Consensus       222 ~eLN~~~-------P~kI~--------------------------v~~p~sf~Igdt~------------------~f~~  250 (1013)
T KOG2012|consen  222 TELNDCK-------PRKIT--------------------------VLGPYSFSIGDTT------------------EFGE  250 (1013)
T ss_pred             cccCCCC-------ceEEE--------------------------EecCceEEecccc------------------chhh
Confidence            8887642       23322                          2334555555544                  3445


Q ss_pred             HHHHHHHHhcccceEeeccccccccCCCChhhHhhhhccc-cchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHH
Q 012768          321 ATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDE-DYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISR  399 (456)
Q Consensus       321 ~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~  399 (456)
                      |..+|.++++|.|+.++|+||++.+.+|.   +  ...|+ +++++..+|++|+||++|.++|||.|.+++   +.|+++
T Consensus       251 y~~GGi~tQVK~Pk~isfKsL~~~L~~P~---f--l~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~---e~DA~~  322 (1013)
T KOG2012|consen  251 YKKGGIFTQVKVPKTISFKSLREALKEPE---F--LISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGN---EEDAEE  322 (1013)
T ss_pred             hhcCceeEEeecCceEecccHHHhhcCCC---e--eeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCC---hhhHHH
Confidence            55567899999999999999999999994   2  35576 678999999999999999999999999876   589999


Q ss_pred             HHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768          400 LKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       400 l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      |.+++.++.+..+ ....++|++|++++..+.|.|.||+|++||+|||||+|+++
T Consensus       323 l~~l~~~i~~~~~-~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~s  376 (1013)
T KOG2012|consen  323 LVELARDISEGLG-LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACS  376 (1013)
T ss_pred             HHHHHHHhhhhcc-ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhc
Confidence            9999999988766 34578999999999999999999999999999999999986

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=9.5e-57  Score=496.76  Aligned_cols=354  Identities=24%  Similarity=0.352  Sum_probs=284.0

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768            1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA   80 (456)
Q Consensus         1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~   80 (456)
                      +||||+|+||.++|++|++++|||+||||+|+|+||||+++|||+|||+|+|.|+.+||+||||++++|||++||+++++
T Consensus         6 lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~   85 (1008)
T TIGR01408         6 LYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVK   85 (1008)
T ss_pred             hhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC--CeEEEEeeccceeeEEeeeCCc
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN--VMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~--ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      +|+++||+|+|++.+..   +   +.+++++||+||+|.++...+..+|++||+++  +|||++++.|++|++|+|+++|
T Consensus        86 ~L~eLNp~V~V~~~~~~---l---~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~  159 (1008)
T TIGR01408        86 KLAELNPYVHVSSSSVP---F---NEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDE  159 (1008)
T ss_pred             HHHHHCCCceEEEeccc---C---CHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCc
Confidence            99999999999987643   2   34578999999999999999999999999999  9999999999999999999995


Q ss_pred             -eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHH-HHhcCCCCCCCHHHHHHHHHHH
Q 012768          159 -TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEW-TNSHGGSLPSTREEKREFKELL  236 (456)
Q Consensus       159 -~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~-~~~~~g~~p~~~~~~~~f~~~~  236 (456)
                       .+++..++...         +   ..+.++.-         ..|++|   .++++- +...+|+       ...|+++ 
T Consensus       160 f~~~d~~ge~p~---------~---~~i~~i~~---------~~~g~V---t~~~~~~h~l~~gd-------~V~f~ev-  207 (1008)
T TIGR01408       160 FEVLDTDGEEPK---------T---GFIASITQ---------ANPGIV---TCLENHRHKLETGD-------FVTFREV-  207 (1008)
T ss_pred             eEEEeCCCCCCC---------c---cccccccc---------CCCceE---EeecCcccCCcCCC-------EEEEeec-
Confidence             56665433211         1   11111110         011222   111110 0112333       2356666 


Q ss_pred             HhhccCCCCCCHHHHHHHHhhc--cCCCCccHHHHHHHhcCCCCchHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhhCCC
Q 012768          237 KSKMVAIDEDNYKEAIEASFKV--FAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGRE  314 (456)
Q Consensus       237 ~~~~~~~~~~nf~EA~~~~~~~--~~~~~i~~~~~~~~~~~~~~fw~l~~~l~~iY~ka~~D~~~~~~~~~~~l~~~g~~  314 (456)
                       +||.++|+..       ++++  ..|.               .|-                              +| +
T Consensus       208 -~gm~~lN~~~-------~~~i~~~~~~---------------~f~------------------------------i~-d  233 (1008)
T TIGR01408       208 -NGMTGLNDGS-------PRKITVISPY---------------SFS------------------------------IG-D  233 (1008)
T ss_pred             -ccccccCCCC-------ceeEEecCCc---------------eEE------------------------------ec-c
Confidence             7888887642       1222  1111               111                              11 2


Q ss_pred             CCCCCHHHHHHHHHhcccceEeeccccccccCCCChhhHhhhhccc-cchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 012768          315 PESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDE-DYSVAMGFYILLRAVDRFAANYNNYPGEFDGPM  393 (456)
Q Consensus       315 ~~~i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~  393 (456)
                      +..+++|..+|+++++|.++.++|+||++.+.+|..     .++|+ +++++..+|++|+|+.+|.++|||+|.+++   
T Consensus       234 t~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~-----~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~---  305 (1008)
T TIGR01408       234 TTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKC-----LIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGC---  305 (1008)
T ss_pred             ccccchhhcCceEEEEeccccccccCHHHHHcCCcc-----cccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCC---
Confidence            344667777899999999999999999999999832     34565 466788899999999999999999999754   


Q ss_pred             hhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768          394 DEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       394 ~~D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      ++|++++.++++++.++.+...+.+++++++.+++++.++++||||++||++||||||+++
T Consensus       306 ~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKais  366 (1008)
T TIGR01408       306 QQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVT  366 (1008)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhc
Confidence            6899999999999998877666679999999999999999999999999999999999986

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-50  Score=378.59  Aligned_cols=291  Identities=29%  Similarity=0.468  Sum_probs=232.1

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768            1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA   80 (456)
Q Consensus         1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~   80 (456)
                      +|||||||||.++|++|+++||||+|.+|+|+|++|||+|+||+++|++|+..|++.|++.|||+..+++|++||++..+
T Consensus        13 lYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~e   92 (331)
T KOG2014|consen   13 LYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLE   92 (331)
T ss_pred             HHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCcee
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV  160 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~  160 (456)
                      +++.+||.|++.+..+   ++.+.+.+||.+||+||.+..+.+.+..+|++||+++++|+.++++|++||.|+++.+|.+
T Consensus        93 rl~~LNPmV~v~~d~e---dl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h~y  169 (331)
T KOG2014|consen   93 RLQDLNPMVDVSVDKE---DLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEHKY  169 (331)
T ss_pred             HHHhcCCceEEEechh---hhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhhhh
Confidence            9999999999988665   4566678999999999999999999999999999999999999999999999999999987


Q ss_pred             EecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhc
Q 012768          161 VESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKM  240 (456)
Q Consensus       161 ~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~  240 (456)
                      .+.+....                                                     -|+..+            .
T Consensus       170 ~~~~~~~~-----------------------------------------------------~~~~~k------------~  184 (331)
T KOG2014|consen  170 LEEKTKVA-----------------------------------------------------KVSQTK------------R  184 (331)
T ss_pred             hhhccccc-----------------------------------------------------cccccc------------c
Confidence            64321110                                                     000000            0


Q ss_pred             cCCCCCCHHHHHHHHhhccCCCCccHHHHHHHhcCCCCchHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhhCCCCCCCCH
Q 012768          241 VAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISK  320 (456)
Q Consensus       241 ~~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~~~~~~fw~l~~~l~~iY~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~  320 (456)
                      ...++..                              .-                                         
T Consensus       185 ~k~~~~~------------------------------~~-----------------------------------------  193 (331)
T KOG2014|consen  185 AKVDETE------------------------------TE-----------------------------------------  193 (331)
T ss_pred             eeeeecc------------------------------ce-----------------------------------------
Confidence            0000000                              00                                         


Q ss_pred             HHHHHHHHhcccceEeeccccccccCCCCh-hhHhhhhccccchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHH
Q 012768          321 ATIKSFCRNARKLKVCRYRLLEDEFSNPSV-PDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISR  399 (456)
Q Consensus       321 ~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~-~~~~~~~~d~~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~  399 (456)
                                ..-+.+.|+|+++.++.+.. ++..      ...+....|.+++++..|.+.+||.||   +-..+|.+.
T Consensus       194 ----------~vk~~~~~~~~~Eal~~~~~~k~k~------~~rr~~~~~~ll~v~l~f~~s~~r~pg---~~~~~d~er  254 (331)
T KOG2014|consen  194 ----------WVKRKVVFPSVKEALSVDWTKKEKR------KPRRTKKLYFLLPVLLKFRTSEGRDPG---ETSEEDLER  254 (331)
T ss_pred             ----------ehhhhhcccCHHHHHhcccchhhhh------hhhccCcceehHHHHHHHHHhcCCCCc---cccHHHHHH
Confidence                      01111234444444443321 1100      113345678899999999999999999   244789999


Q ss_pred             HHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768          400 LKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       400 l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      +..|.++++...    .-+++.+. +|..+.+.|++|+||++|||+||||||+|+
T Consensus       255 l~~I~~ell~s~----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~is  304 (331)
T KOG2014|consen  255 LLQIRNELLESE----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAIS  304 (331)
T ss_pred             HHHHHHhhcccc----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhh
Confidence            999999888632    23455666 899999999999999999999999999986

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=1.4e-48  Score=377.38  Aligned_cols=156  Identities=28%  Similarity=0.385  Sum_probs=147.8

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768            1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA   80 (456)
Q Consensus         1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~   80 (456)
                      +||||+++||.++|+||++++|+|+|+||+|+|+||||+++||++|||+|+|.++.+||+|||+++++|+|++||+++++
T Consensus         1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~   80 (286)
T cd01491           1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA   80 (286)
T ss_pred             CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCcee
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV  160 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~  160 (456)
                      +|+++||+|++++.+..   +   +.+++.+||+||+|+++...+..+|++|+++++|||.+++.|++|++|+|+++|+.
T Consensus        81 ~L~eLNp~V~V~~~~~~---~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~  154 (286)
T cd01491          81 RLAELNPYVPVTVSTGP---L---TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFT  154 (286)
T ss_pred             HHHHHCCCCEEEEEecc---C---CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEE
Confidence            99999999999987653   1   34678899999999999999999999999999999999999999999999999776


Q ss_pred             Ee
Q 012768          161 VE  162 (456)
Q Consensus       161 ~~  162 (456)
                      +-
T Consensus       155 ~~  156 (286)
T cd01491         155 VY  156 (286)
T ss_pred             Ee
Confidence            54

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=1.1e-38  Score=295.39  Aligned_cols=152  Identities=34%  Similarity=0.558  Sum_probs=142.8

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768            1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA   80 (456)
Q Consensus         1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~   80 (456)
                      .||||+|+||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|++|||+++.+|+|++||+++++
T Consensus         3 ~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~   82 (197)
T cd01492           3 LYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLE   82 (197)
T ss_pred             hhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHH
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV  155 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  155 (456)
                      +|+++||+++++......   .+.+.+++++||+||+|.++...+..++++|+++++|+|++++.|++|++++++
T Consensus        83 ~L~~lNp~v~i~~~~~~~---~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~  154 (197)
T cd01492          83 RLRALNPRVKVSVDTDDI---SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL  154 (197)
T ss_pred             HHHHHCCCCEEEEEecCc---cccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec
Confidence            999999999999876543   233456789999999999998999999999999999999999999999999875

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=2.2e-38  Score=293.77  Aligned_cols=155  Identities=37%  Similarity=0.606  Sum_probs=143.6

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccc--cccCcchHHHH
Q 012768            1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDE--SCVGESKAKSV   78 (456)
Q Consensus         1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~--~dvG~~Ka~~~   78 (456)
                      .||||+|+||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.++.+|++|||++++  +|+|++||+++
T Consensus         1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~   80 (198)
T cd01485           1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS   80 (198)
T ss_pred             CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence            4999999999999999999999999999999999999999999999999999999999999999998  89999999999


Q ss_pred             HHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768           79 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV  155 (456)
Q Consensus        79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  155 (456)
                      +++|+++||+++++++........+...+++++||+||+|.++...+..+|++|+++++|+|.+++.|++|++++++
T Consensus        81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~  157 (198)
T cd01485          81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF  157 (198)
T ss_pred             HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch
Confidence            99999999999999887654322223356789999999999998899999999999999999999999999999875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=3.9e-36  Score=279.86  Aligned_cols=195  Identities=20%  Similarity=0.269  Sum_probs=159.8

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      ||||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++++++|+|.|+++||+|||+++++|+|++||++++
T Consensus         2 Y~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~   81 (202)
T TIGR02356         2 YARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAA   81 (202)
T ss_pred             CcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ++|+++||+++++.+.....   +.+ .++++++|+||+|.++.+.+..++++|+++++|+|++++.|++|++++..++.
T Consensus        82 ~~l~~~np~v~i~~~~~~i~---~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~  158 (202)
T TIGR02356        82 QRLRELNSDIQVTALKERVT---AENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGG  158 (202)
T ss_pred             HHHHHhCCCCEEEEehhcCC---HHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCC
Confidence            99999999999988765432   112 35688999999999999999999999999999999999999999999876531


Q ss_pred             eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHH
Q 012768          159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEW  214 (456)
Q Consensus       159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~  214 (456)
                                 ...|+.|-||+..+...++    ......+.+|.++..+.+.+..
T Consensus       159 -----------~~~c~~c~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~e~~  199 (202)
T TIGR02356       159 -----------EGPCLRCLFPDIADTGPSC----ATAGVIGPVVGVIGSLQALEAL  199 (202)
T ss_pred             -----------CCCChhhcCCCCcccCCCC----ccCCccchHHHHHHHHHHHHHH
Confidence                       1236666666521111111    1112344555566666665543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=1.4e-35  Score=283.82  Aligned_cols=198  Identities=17%  Similarity=0.203  Sum_probs=163.2

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      |+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||++++
T Consensus        13 Y~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~   92 (245)
T PRK05690         13 YNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAR   92 (245)
T ss_pred             HHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHH
Confidence            8999988  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ++|+++||+++++.+....   .+.+ .++++++|+||+|.++...+..++++|+++++|+|++++.|+.|++.+..++.
T Consensus        93 ~~l~~lnp~v~i~~~~~~i---~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~  169 (245)
T PRK05690         93 AALARINPHIAIETINARL---DDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQD  169 (245)
T ss_pred             HHHHHHCCCCEEEEEeccC---CHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecCC
Confidence            9999999999999876543   2222 45788999999999999999999999999999999999999999998876431


Q ss_pred             eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768          159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS  217 (456)
Q Consensus       159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~  217 (456)
                      .           ..|+.|.+|+..+-  .  .+......++.++.++..+.+.+..|-.
T Consensus       170 ~-----------~~c~~c~~~~~~~~--~--~~~~~~gv~~~~~~~~~~~~a~e~ik~l  213 (245)
T PRK05690        170 D-----------EPCYRCLSRLFGEN--A--LTCVEAGVMAPLVGVIGSLQAMEAIKLL  213 (245)
T ss_pred             C-----------CceeeeccCCCCCC--C--CCcccCCccchHHHHHHHHHHHHHHHHH
Confidence            0           12444545533211  0  0111223456677778777777766643

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=3.5e-35  Score=282.54  Aligned_cols=153  Identities=17%  Similarity=0.168  Sum_probs=142.7

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      |+||+.++|.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++.+|+|++||++++++
T Consensus        10 ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~   89 (287)
T PRK08223         10 FCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEM   89 (287)
T ss_pred             HhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCCh--HHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGE--EKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~--~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                      |+++||+++|+++...   +.+++ .++++++|+||++.|+.  ..+..+|+.|+++++|+|++++.|+.|++.+..|+
T Consensus        90 l~~iNP~v~V~~~~~~---l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~  165 (287)
T PRK08223         90 VRDINPELEIRAFPEG---IGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG  165 (287)
T ss_pred             HHHHCCCCEEEEEecc---cCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC
Confidence            9999999999987653   44444 56788999999998874  78999999999999999999999999999988764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=1.5e-34  Score=274.48  Aligned_cols=154  Identities=23%  Similarity=0.358  Sum_probs=142.3

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      ||||+++  ||.++|++|++++|+|+||||+|+++|++|+++||++|+|+|+|.|+++||+|||+++++|+|++||++++
T Consensus         2 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~   81 (228)
T cd00757           2 YSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAA   81 (228)
T ss_pred             cceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                      ++|+++||+++++.+......  ++..++++++|+||+|.++...+..++++|+++++|+|++++.|+.|++.+..|+
T Consensus        82 ~~l~~~np~~~i~~~~~~i~~--~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~  157 (228)
T cd00757          82 ERLRAINPDVEIEAYNERLDA--ENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPG  157 (228)
T ss_pred             HHHHHhCCCCEEEEecceeCH--HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCC
Confidence            999999999999887654311  1124567889999999999999999999999999999999999999999887765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=1.6e-34  Score=294.04  Aligned_cols=200  Identities=21%  Similarity=0.226  Sum_probs=168.4

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      |+||+++  ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||++++
T Consensus        19 y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~   98 (390)
T PRK07411         19 YSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAK   98 (390)
T ss_pred             hhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ++|+++||+++++++...   +...+ .+++.++|+||+|.++...+..+|++|++.++|+|++++.|++|++.+..+..
T Consensus        99 ~~l~~~np~v~v~~~~~~---~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~  175 (390)
T PRK07411         99 NRILEINPYCQVDLYETR---LSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEG  175 (390)
T ss_pred             HHHHHHCCCCeEEEEecc---cCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCC
Confidence            999999999999987753   22222 46788999999999999999999999999999999999999999998764321


Q ss_pred             eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768          159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH  218 (456)
Q Consensus       159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~  218 (456)
                                  ..|+.|-||+... ...+ .+.......+.+|.++..+++.+..|-..
T Consensus       176 ------------~~c~~c~~~~~~~-~~~~-~~c~~~gvlg~~~~~~g~~~a~eaik~l~  221 (390)
T PRK07411        176 ------------GPNYRDLYPEPPP-PGMV-PSCAEGGVLGILPGIIGVIQATETIKIIL  221 (390)
T ss_pred             ------------CCChHHhcCCCCC-cccC-CCCccCCcCcchHHHHHHHHHHHHHHHHc
Confidence                        1355566664321 0100 11122345678889999999999887654

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=2.3e-34  Score=274.19  Aligned_cols=199  Identities=18%  Similarity=0.211  Sum_probs=160.2

Q ss_pred             CCcccccccC--HHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768            1 MSMSTLRIWG--EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV   78 (456)
Q Consensus         1 ~y~RQlrlwG--~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~   78 (456)
                      -||||+++||  .++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||+++
T Consensus         4 ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a   83 (240)
T TIGR02355         4 RYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESA   83 (240)
T ss_pred             ceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHH
Confidence            3999999975  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee-CC
Q 012768           79 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV-KE  157 (456)
Q Consensus        79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~-~~  157 (456)
                      +++|+++||+++++.+......  ++..++++++|+||+|.++...+..+|++|+++++|+|++++.|+.|++.+.. ++
T Consensus        84 ~~~l~~inp~v~i~~~~~~i~~--~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~  161 (240)
T TIGR02355        84 KDALTQINPHIAINPINAKLDD--AELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQD  161 (240)
T ss_pred             HHHHHHHCCCcEEEEEeccCCH--HHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCC
Confidence            9999999999999987654321  11245788999999999999999999999999999999999999999987543 11


Q ss_pred             ceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768          158 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS  217 (456)
Q Consensus       158 ~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~  217 (456)
                      .            ..|+.|.+|...+.    .........++.++.++..+++.+..|-.
T Consensus       162 ~------------~~c~~C~~~~~~~~----~~~~~~~gv~~p~~~~~~~~~a~e~ik~l  205 (240)
T TIGR02355       162 G------------EPCYRCLSRLFGEN----ALSCVEAGVMAPVVGVVGSLQAMEAIKVL  205 (240)
T ss_pred             C------------CCccccccccCCCC----CCCccccCccchHHHHHHHHHHHHHHHHH
Confidence            1            11333433221110    11112233466677788778887776643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=1.1e-34  Score=291.75  Aligned_cols=200  Identities=19%  Similarity=0.169  Sum_probs=166.0

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      |+||+++  ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||++++
T Consensus         9 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~   88 (355)
T PRK05597          9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAR   88 (355)
T ss_pred             hhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ++|+++||+++++++....   ...+ .++++++|+||+|.++...+..+|+.|+++++|||++++.|+.|++.+..+++
T Consensus        89 ~~l~~~np~v~v~~~~~~i---~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~~  165 (355)
T PRK05597         89 EAMLALNPDVKVTVSVRRL---TWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGH  165 (355)
T ss_pred             HHHHHHCCCcEEEEEEeec---CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCCC
Confidence            9999999999999876543   2222 46788999999999999999999999999999999999999999999866442


Q ss_pred             eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768          159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH  218 (456)
Q Consensus       159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~  218 (456)
                      .            .|+.|-||+...- +... ........+.+|.++..+++.|..|-..
T Consensus       166 ~------------~~~~~~~~~~~~~-~~~~-~c~~~gv~g~~~~~~g~~~a~e~ik~l~  211 (355)
T PRK05597        166 G------------PIYEDLFPTPPPP-GSVP-SCSQAGVLGPVVGVVGSAMAMEALKLIT  211 (355)
T ss_pred             C------------CCHHHhCCCCCCc-cCCC-CccccCcchhHHHHHHHHHHHHHHHHHh
Confidence            1            1334444432110 0000 1112334677888888888888877543

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-34  Score=272.75  Aligned_cols=193  Identities=24%  Similarity=0.257  Sum_probs=162.2

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCc-chHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGE-SKAKSVCA   80 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~-~Ka~~~~~   80 (456)
                      |+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.++.+||+||++++++|+|+ +|++++++
T Consensus        10 y~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~   89 (231)
T PRK08328         10 YDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKW   89 (231)
T ss_pred             HhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999 59999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCce
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT  159 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~  159 (456)
                      +|+++||+++++.+...   +.+.+ .++++++|+||+|.++...+..++++|+++++|+|++++.|++|++++..|+++
T Consensus        90 ~l~~~np~v~v~~~~~~---~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~~  166 (231)
T PRK08328         90 KLERFNSDIKIETFVGR---LSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKT  166 (231)
T ss_pred             HHHHhCCCCEEEEEecc---CCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCCC
Confidence            99999999999987643   22223 356889999999999999999999999999999999999999999998877643


Q ss_pred             eEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHH
Q 012768          160 VVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTN  216 (456)
Q Consensus       160 ~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~  216 (456)
                                  .|+.|.||+...       ........+.+|.++..+.+.+..|-
T Consensus       167 ------------~c~~~~~~~~~~-------~~~~~~~~~~~~~ii~~~~a~e~~k~  204 (231)
T PRK08328        167 ------------KRLREIFPKVKK-------KKGKFPILGATAGVIGSIQAMEVIKL  204 (231)
T ss_pred             ------------CCHHHhCCCCCC-------ccccCCcCchHHHHHHHHHHHHHHHH
Confidence                        134445553211       01112235667778877887776654

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=9.8e-33  Score=306.07  Aligned_cols=182  Identities=23%  Similarity=0.358  Sum_probs=159.6

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCCccccccccccCcchHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESKAK   76 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~   76 (456)
                      |+||+++||.++|++|++++|+|+||||+|||++|||+++||     |+|+|+|.|.|+.+||+|||+++.+|||++||+
T Consensus       402 Ydrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~  481 (1008)
T TIGR01408       402 YDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSY  481 (1008)
T ss_pred             hHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHH
Confidence            899999999999999999999999999999999999999999     899999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEEEecChhhhhc--CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEee
Q 012768           77 SVCAFLQELNDAVKAKFIEEYPEALIE--MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS  154 (456)
Q Consensus        77 ~~~~~l~~lnp~v~v~~~~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~  154 (456)
                      +++++++++||+++++++......-++  -+.++|+++|+||+|.|+..++..+++.|+.+++|+|.+++.|+.|++++.
T Consensus       482 vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~  561 (1008)
T TIGR01408       482 TAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVV  561 (1008)
T ss_pred             HHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEE
Confidence            999999999999999988765322111  124688999999999999999999999999999999999999999999999


Q ss_pred             eCCce-eEecCCCCCCCCcccCCCCchhhhhhhc
Q 012768          155 VKEHT-VVESKPDHFLDDLRLNNPWPELRKFAET  187 (456)
Q Consensus       155 ~~~~~-~~~~~~~~~~~dlrl~~p~p~l~~~~~~  187 (456)
                      .|+++ +.+++++.    .+...|+..|..+-..
T Consensus       562 ip~~te~y~~~~d~----~~~~~P~Ctl~~~P~~  591 (1008)
T TIGR01408       562 VPHLTESYGSSRDP----PEKEIPFCTLKSFPAA  591 (1008)
T ss_pred             eCCCcCCCCCCCCC----CCCCCCcccccCCCCC
Confidence            99854 55555542    2345566666665444

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=7.5e-34  Score=289.66  Aligned_cols=203  Identities=21%  Similarity=0.219  Sum_probs=166.4

Q ss_pred             CCcccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768            1 MSMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV   78 (456)
Q Consensus         1 ~y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~   78 (456)
                      .|+||+++  ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||+++
T Consensus        22 ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a  101 (392)
T PRK07878         22 RYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSA  101 (392)
T ss_pred             HhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHH
Confidence            39999999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           79 CAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                      +++|+++||+++++++....   ...+ .++++++|+||+|.++...+..+|++|+++++|||++++.|++|++++..++
T Consensus       102 ~~~l~~~np~v~i~~~~~~i---~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~  178 (392)
T PRK07878        102 RDSIVEINPLVNVRLHEFRL---DPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWED  178 (392)
T ss_pred             HHHHHHhCCCcEEEEEeccC---ChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecC
Confidence            99999999999998876533   2222 4678899999999999999999999999999999999999999999976532


Q ss_pred             ceeEecCCCCCCCCcccCCCCchhhh--hhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768          158 HTVVESKPDHFLDDLRLNNPWPELRK--FAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH  218 (456)
Q Consensus       158 ~~~~~~~~~~~~~dlrl~~p~p~l~~--~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~  218 (456)
                      +      |+.+.+  |+.|-||+...  ...+++    .....+.+|.++..+++.+..|...
T Consensus       179 ~------~~~~~~--c~~c~~~~~~~~~~~~~~~----~~gv~g~~~~~~g~~~a~e~ik~l~  229 (392)
T PRK07878        179 A------PDGLGL--NYRDLYPEPPPPGMVPSCA----EGGVLGVLCASIGSIMGTEAIKLIT  229 (392)
T ss_pred             C------CCCCCC--eeeeecCCCCCccCCCCCc----cCCccchHHHHHHHHHHHHHHHHHh
Confidence            1      111122  33444443211  111221    2334677889999999988887543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=1.4e-33  Score=284.43  Aligned_cols=203  Identities=18%  Similarity=0.271  Sum_probs=168.0

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      |+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|+|++||++++
T Consensus        22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~  101 (370)
T PRK05600         22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA  101 (370)
T ss_pred             hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ++|+++||+++++.+...   +.+.+ .++++++|+||+|.++...+..+|++|+++++|+|++++.|+.|++.+..++-
T Consensus       102 ~~l~~~np~v~i~~~~~~---i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~~~  178 (370)
T PRK05600        102 ERLKEIQPDIRVNALRER---LTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGP  178 (370)
T ss_pred             HHHHHHCCCCeeEEeeee---cCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEecCC
Confidence            999999999999887643   22223 45788999999999999999999999999999999999999999998764320


Q ss_pred             eeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768          159 TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH  218 (456)
Q Consensus       159 ~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~  218 (456)
                             .  ....|+.|-||+..+. +.. .+.......+.+|.++..+.+.+..|...
T Consensus       179 -------~--~~~~~~~~l~~~~~~~-~~~-~~c~~~gvlg~~~~~ig~~~a~eaik~l~  227 (370)
T PRK05600        179 -------D--HRGVGLRDLFPEQPSG-DSI-PDCATAGVLGATTAVIGALMATEAIKFLT  227 (370)
T ss_pred             -------C--CCCCCcHhhCCCCCcc-ccC-CCCccCCcchhHHHHHHHHHHHHHHHHHh
Confidence                   0  0124666777754221 000 01112234677888888888888877543

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=272.56  Aligned_cols=198  Identities=18%  Similarity=0.221  Sum_probs=161.5

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccC--cchHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESKAKS   77 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~Ka~~   77 (456)
                      ||||+++  ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+|  ++||++
T Consensus         5 Y~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~a   84 (338)
T PRK12475          5 YSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIA   84 (338)
T ss_pred             hhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHH
Confidence            9999998  899999999999999999999999999999999999999999999999999999999999985  899999


Q ss_pred             HHHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           78 VCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        78 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                      ++++|+++||+++++++......  +...++++++|+||++.++...+..+|++|+++++|+|++++.|++|++++..|+
T Consensus        85 a~~~l~~inp~v~i~~~~~~~~~--~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~  162 (338)
T PRK12475         85 AKEHLRKINSEVEIVPVVTDVTV--EELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPG  162 (338)
T ss_pred             HHHHHHHHCCCcEEEEEeccCCH--HHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCC
Confidence            99999999999999887653211  1124567899999999999999999999999999999999999999999887765


Q ss_pred             ceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768          158 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS  217 (456)
Q Consensus       158 ~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~  217 (456)
                      .+            .|+.|-+|.+..-...+|    .....+.++.++..+++.+..|-.
T Consensus       163 ~t------------pC~~Cl~~~~p~~~~~c~----~~Gvl~p~v~~iaslqa~EalK~L  206 (338)
T PRK12475        163 KT------------PCLRCLMEHVPVGGATCD----TAGIIQPAVQIVVAYQVTEALKIL  206 (338)
T ss_pred             CC------------CCHHHhcCCCCCCCCCCc----cCCcCchHHHHHHHHHHHHHHHHH
Confidence            21            255555554321111112    222344555677777777766643

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=2.8e-32  Score=272.12  Aligned_cols=197  Identities=18%  Similarity=0.199  Sum_probs=161.7

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccC--cchHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESKAKS   77 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~Ka~~   77 (456)
                      ||||+++  ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+|  ++|+++
T Consensus         5 Y~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~a   84 (339)
T PRK07688          5 YSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVA   84 (339)
T ss_pred             hhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHH
Confidence            9999998  999999999999999999999999999999999999999999999999999999999999995  599999


Q ss_pred             HHHHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeC
Q 012768           78 VCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVK  156 (456)
Q Consensus        78 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~  156 (456)
                      ++++|+++||+++++.+....   .+.+ .++++++|+||+|.++...+..+|++|+++++|+|++++.|++|++++..|
T Consensus        85 a~~~l~~inp~v~v~~~~~~~---~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p  161 (339)
T PRK07688         85 AKKRLEEINSDVRVEAIVQDV---TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIP  161 (339)
T ss_pred             HHHHHHHHCCCcEEEEEeccC---CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECC
Confidence            999999999999998876532   2222 456889999999999999999999999999999999999999999887654


Q ss_pred             CceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768          157 EHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS  217 (456)
Q Consensus       157 ~~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~  217 (456)
                      +.            ..|+.|-||++..-...+    .+....+.+|.++..+++.+..|-.
T Consensus       162 ~~------------~pC~~Cl~~~~~~~~~~c----~~~gv~~p~~~~i~~~~a~ealk~l  206 (339)
T PRK07688        162 GK------------TPCLRCLLQSIPLGGATC----DTAGIISPAVQIVASYQVTEALKLL  206 (339)
T ss_pred             CC------------CCCeEeecCCCCCCCCCC----ccCCcccHHHHHHHHHHHHHHHHHH
Confidence            41            124444444332211111    1223355677788888888777643

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=99.97  E-value=3.3e-30  Score=252.50  Aligned_cols=138  Identities=30%  Similarity=0.448  Sum_probs=127.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      +|+|+|+||+|+|++|||+++|||+|+|+|+|.++.+||+|||+++++|+|++||++++++++++||+++++++......
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999987654322


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCce
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT  159 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~  159 (456)
                      . ..+.+++++||+||++.++.+.+..+|++|+.+++|||.+++.|++|++++++|+++
T Consensus        81 ~-~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t  138 (312)
T cd01489          81 P-DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKT  138 (312)
T ss_pred             c-cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCC
Confidence            1 123578999999999999999999999999999999999999999999999999855

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=99.97  E-value=1.7e-29  Score=256.38  Aligned_cols=138  Identities=25%  Similarity=0.378  Sum_probs=127.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +|+|||+||+|||++|||+++||     |+|+|+|.|.|+.+||+|||+++++|||++||+++++.++++||+++++++.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            69999999999999999999999     9999999999999999999999999999999999999999999999999987


Q ss_pred             cChhhhhc--CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           96 EYPEALIE--MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        96 ~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ......++  -+.++++++|+||.|.|+...|..+++.|+.+++|+|.+++.|+.|++.+..|++
T Consensus        81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~  145 (435)
T cd01490          81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHL  145 (435)
T ss_pred             cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCC
Confidence            64432111  1257889999999999999999999999999999999999999999999999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=99.97  E-value=5.4e-31  Score=248.93  Aligned_cols=161  Identities=23%  Similarity=0.275  Sum_probs=136.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      +|+|+|+||+|||++|+|+++|+|+|+++|.|.|+.+||+|||+++++|+|++||++++++++++||+++++.+......
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999987765422


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc-eeEecCCCC--CCCCcccCCC
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH-TVVESKPDH--FLDDLRLNNP  177 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~-~~~~~~~~~--~~~dlrl~~p  177 (456)
                      ....+.+++++||+||++.|+...+..+|+.|+.+++|+|.+++.|+.|++++..|++ .+.+..++.  .....|....
T Consensus        81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~  160 (234)
T cd01484          81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIAS  160 (234)
T ss_pred             hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCC
Confidence            1222356889999999999999999999999999999999999999999999998874 344433221  1223455555


Q ss_pred             Cchh
Q 012768          178 WPEL  181 (456)
Q Consensus       178 ~p~l  181 (456)
                      +|.+
T Consensus       161 ~P~~  164 (234)
T cd01484         161 MPRL  164 (234)
T ss_pred             CCCC
Confidence            5544

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.97  E-value=1.1e-30  Score=265.53  Aligned_cols=202  Identities=22%  Similarity=0.275  Sum_probs=165.2

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      |+||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||++++++|+|++||++++
T Consensus       116 y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~  195 (376)
T PRK08762        116 YSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAA  195 (376)
T ss_pred             HHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHH
Confidence            8999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ++|+++||+++++.+.....   +.+ .++++++|+||+|+++...+..+|++|+++++|+|++++.|+.|++.+..|+.
T Consensus       196 ~~l~~~np~v~v~~~~~~~~---~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~~  272 (376)
T PRK08762        196 QRLAALNPDVQVEAVQERVT---SDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGR  272 (376)
T ss_pred             HHHHHHCCCCEEEEEeccCC---hHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCCC
Confidence            99999999999887664322   112 34578999999999999999999999999999999999999999999877652


Q ss_pred             eeEecCCCCCCCCcccCCCCchhhh--hhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhc
Q 012768          159 TVVESKPDHFLDDLRLNNPWPELRK--FAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH  218 (456)
Q Consensus       159 ~~~~~~~~~~~~dlrl~~p~p~l~~--~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~  218 (456)
                      .     |   ....|+.|-||+...  ....++    .....+.+|.++..+.+.+..|-..
T Consensus       273 ~-----~---~~~~c~~c~~~~~~~~~~~~~~~----~~gv~g~~~~~~~~~~a~e~~k~l~  322 (376)
T PRK08762        273 Q-----R---GQAPCYRCLFPEPPPPELAPSCA----EAGVLGVLPGVIGLLQATEAIKLLL  322 (376)
T ss_pred             C-----C---CCCCCHhhcCCCCCCcccCCCCc----cCCcchhhHHHHHHHHHHHHHHHHh
Confidence            1     0   113356666654321  111111    1223566778888888887776443

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=99.97  E-value=3.8e-30  Score=248.50  Aligned_cols=202  Identities=23%  Similarity=0.273  Sum_probs=162.4

Q ss_pred             CCcccccccCHH--HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768            1 MSMSTLRIWGEQ--GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV   78 (456)
Q Consensus         1 ~y~RQlrlwG~~--~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~   78 (456)
                      .||||+++|+..  +|++|+.++|+|+|+||+|++++++|+++|||+++|+|+|+|+.+||+||++++++|+|++|++++
T Consensus        10 ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a   89 (254)
T COG0476          10 RYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVA   89 (254)
T ss_pred             hhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHH
Confidence            399999997655  599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           79 CAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                      ++.++++||.+++..+...   +...+ .+++.++|+|+++.++...+..+|+.|+++++|++++++.|++|+++++.++
T Consensus        90 ~~~l~~ln~~v~v~~~~~~---l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~  166 (254)
T COG0476          90 AKALRKLNPLVEVVAYLER---LDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPG  166 (254)
T ss_pred             HHHHHHhCCCCeEEEeecc---cChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecC
Confidence            9999999999999987764   33334 4778899999999999999999999999999999999999999999999877


Q ss_pred             ceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHh
Q 012768          158 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS  217 (456)
Q Consensus       158 ~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~  217 (456)
                      .           +..|+.|-+|+...-. ..+..-.+......++..+..+.+++..+..
T Consensus       167 ~-----------~~~c~~~~~~~~~~~~-~~~~~c~~~gv~~~~~~~~~~~~~~~~~k~~  214 (254)
T COG0476         167 D-----------KTPCYRCLFPEKPPPG-LVPTSCDEAGVLGPLVGVVGSLQALEAIKLL  214 (254)
T ss_pred             C-----------CCCcccccCCCCCCcc-ccccccccCCccccccchhhhHHHHHHHHHh
Confidence            3           1234444444443210 0000011222334455566666666655543

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=99.97  E-value=4.1e-30  Score=249.21  Aligned_cols=158  Identities=23%  Similarity=0.323  Sum_probs=133.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      +|+|+|+||+|||++|||+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||++++++|+++||+++++++...   
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~---   77 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGK---   77 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecc---
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999887653   


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc--------CCeEEEEeeccceeeEEeeeCCce-----eEecCCCC
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA--------NVMLIFARSYGLTGFVRISVKEHT-----VVESKPDH  167 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~--------~ip~i~~~~~G~~G~v~~~~~~~~-----~~~~~~~~  167 (456)
                      +.+.+.+++++||+||++.|+.+.|..+|+.|.+.        ++|+|.+++.|+.|++++..|+++     ..+.+|+.
T Consensus        78 i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~  157 (291)
T cd01488          78 IQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ  157 (291)
T ss_pred             cCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC
Confidence            33345688999999999999999999999987554        599999999999999999998854     23444444


Q ss_pred             CCCCcccCCCCchh
Q 012768          168 FLDDLRLNNPWPEL  181 (456)
Q Consensus       168 ~~~dlrl~~p~p~l  181 (456)
                      ...-+|-..-+|..
T Consensus       158 ~~~p~Cti~~~P~~  171 (291)
T cd01488         158 VTFPLCTIANTPRL  171 (291)
T ss_pred             CCCCcccccCCCCC
Confidence            33334444444443

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK14852 hypothetical protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=280.15  Aligned_cols=156  Identities=17%  Similarity=0.136  Sum_probs=142.5

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      |+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|||++||++++++
T Consensus       315 y~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~  394 (989)
T PRK14852        315 FSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTER  394 (989)
T ss_pred             hhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLG--EEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ++++||+++|+++...   +.+++ .++++++|+||+|.|+  ...+..+++.|++++||+|++++.|+.|++++..++.
T Consensus       395 l~~INP~v~I~~~~~~---I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~~  471 (989)
T PRK14852        395 ALSVNPFLDIRSFPEG---VAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPGG  471 (989)
T ss_pred             HHHHCCCCeEEEEecC---CCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCCC
Confidence            9999999999998653   33333 5788999999998876  4567788889999999999999999999999988664


Q ss_pred             ee
Q 012768          159 TV  160 (456)
Q Consensus       159 ~~  160 (456)
                      .+
T Consensus       472 ~~  473 (989)
T PRK14852        472 MN  473 (989)
T ss_pred             CC
Confidence            43

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.97  E-value=3.9e-30  Score=246.80  Aligned_cols=140  Identities=22%  Similarity=0.377  Sum_probs=127.0

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      |+||.+|||.++|++|++++|+|+|+||+|+++|++|+++|||+|||+|.|.++.+|++||+++..+++|++|+++++++
T Consensus        13 f~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~r   92 (268)
T PRK15116         13 FGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAER   92 (268)
T ss_pred             HhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCC-cCCC-CCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMN-PPFF-SQFTLVVATQLGEEKMIKLDRICREANVMLIFARS  144 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~  144 (456)
                      +.++||+++++.+...   +...+ .+++ .+||+||+|.++...+..|+++|+++++|+|.++.
T Consensus        93 l~~INP~~~V~~i~~~---i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gG  154 (268)
T PRK15116         93 IRQINPECRVTVVDDF---ITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGG  154 (268)
T ss_pred             HHhHCCCcEEEEEecc---cChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence            9999999999887542   22222 2334 47999999999988899999999999999998743

>PRK14851 hypothetical protein; Provisional

Probab=99.96  E-value=6.6e-30  Score=273.95  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=143.2

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      |+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++.+|+|++|+++++++
T Consensus        26 y~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~  105 (679)
T PRK14851         26 FSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQ  105 (679)
T ss_pred             hhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCc
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLG--EEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      ++++||+++|+++...   +.+++ .++++++|+||+|.|+  ...+..+++.|++++||+|++++.|+.|++++..++.
T Consensus       106 l~~inP~~~I~~~~~~---i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~~  182 (679)
T PRK14851        106 ALSINPFLEITPFPAG---INADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQG  182 (679)
T ss_pred             HHHhCCCCeEEEEecC---CChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCCC
Confidence            9999999999987754   33334 5678999999988886  4568899999999999999999999999999988764


Q ss_pred             e
Q 012768          159 T  159 (456)
Q Consensus       159 ~  159 (456)
                      .
T Consensus       183 ~  183 (679)
T PRK14851        183 M  183 (679)
T ss_pred             C
Confidence            3

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.96  E-value=4.6e-30  Score=244.47  Aligned_cols=197  Identities=21%  Similarity=0.252  Sum_probs=169.1

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      ||||+-+  +|.+||.+|++++||||||||+||-++..|+.+|||++-|||.|+|+.+||.||.+++++.+|+.||++++
T Consensus        47 YsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~  126 (427)
T KOG2017|consen   47 YSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAA  126 (427)
T ss_pred             hhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHH
Confidence            8999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee-CC
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV-KE  157 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~-~~  157 (456)
                      ..++++||.|+|..+.+   .+...| .+.+++||+|++|+|+..+|+.+++.|...++|+|.++..++-|++.+.- .+
T Consensus       127 ~~lr~lNs~v~v~~y~~---~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~  203 (427)
T KOG2017|consen  127 AFLRRLNSHVEVQTYNE---FLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNN  203 (427)
T ss_pred             HHHHhcCCCceeeechh---hccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCC
Confidence            99999999999887654   455455 57789999999999999999999999999999999999999999997753 22


Q ss_pred             ceeEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHH
Q 012768          158 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTN  216 (456)
Q Consensus       158 ~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~  216 (456)
                                 +|..|-.-|-|...+-+.++    .+.-..+.+++++..++++|..|.
T Consensus       204 -----------GPCYRClFP~Ppp~~~vt~C----~dgGVlGpv~GviG~mQALE~iKl  247 (427)
T KOG2017|consen  204 -----------GPCYRCLFPNPPPPEAVTNC----ADGGVLGPVTGVIGCMQALETIKL  247 (427)
T ss_pred             -----------CceeeecCCCCcChHHhccc----ccCceeecchhhhhHHHHHHHHHH
Confidence                       33333333333333344443    344557888999999999998875

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.96  E-value=7.6e-29  Score=216.46  Aligned_cols=134  Identities=31%  Similarity=0.447  Sum_probs=118.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ++++|+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+|++|+++++++|+++||+++++.+...
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999988764


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI  153 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~  153 (456)
                      ...  +...++++++|+||+|.++.+.+..++++|+++++|+|.+++.|++|++++
T Consensus        81 ~~~--~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~  134 (135)
T PF00899_consen   81 IDE--ENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM  134 (135)
T ss_dssp             CSH--HHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred             ccc--ccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence            411  112355679999999999999999999999999999999999999999965

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.96  E-value=7.3e-29  Score=229.79  Aligned_cols=115  Identities=27%  Similarity=0.348  Sum_probs=104.7

Q ss_pred             CCcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768            1 MSMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA   80 (456)
Q Consensus         1 ~y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~   80 (456)
                      .||||+|+||.+||+||++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||++++ ++|++||+++++
T Consensus         8 RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~   86 (287)
T PTZ00245          8 RYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALG   86 (287)
T ss_pred             HHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHH
Confidence            3999999999999999999999999999999999999999999999999999999999999999997 689999999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHH
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEK  124 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~  124 (456)
                      +|+++||+|+++.+...   +..     -++|++||+++.+.+.
T Consensus        87 ~L~eLNP~V~V~~i~~r---ld~-----~n~fqvvV~~~~~le~  122 (287)
T PTZ00245         87 ALQRLNPHVSVYDAVTK---LDG-----SSGTRVTMAAVITEED  122 (287)
T ss_pred             HHHHHCCCcEEEEcccc---cCC-----cCCceEEEEEcccHHH
Confidence            99999999999887542   211     3489999999887554

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=99.96  E-value=3.2e-28  Score=227.85  Aligned_cols=149  Identities=22%  Similarity=0.186  Sum_probs=132.3

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      +.++.+.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||+++ .+|+|++|+++++++
T Consensus        11 ~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~   89 (212)
T PRK08644         11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKEN   89 (212)
T ss_pred             HHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHH
Confidence            4566777999999999999999999999999999999999999999999999999999999865 789999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CCeEEEEeeccceeeEEee
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARSYGLTGFVRIS  154 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~~G~~G~v~~~  154 (456)
                      |+++||+++++.+.....   +.+ .++++++|+||.|.++...+..+++.|+++ ++|+|.+...|.+|++...
T Consensus        90 l~~lnp~v~v~~~~~~i~---~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~  161 (212)
T PRK08644         90 LLEINPFVEIEAHNEKID---EDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSI  161 (212)
T ss_pred             HHHHCCCCEEEEEeeecC---HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEE
Confidence            999999999988775432   223 367889999999999999999999999999 9999999777777766543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.95  E-value=4.3e-28  Score=228.97  Aligned_cols=135  Identities=24%  Similarity=0.356  Sum_probs=121.9

Q ss_pred             cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCC
Q 012768            9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA   88 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~   88 (456)
                      ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|++||+++..+++|++|+++++++|+++||+
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~   80 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE   80 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEecChhhhhcCC-cCCC-CCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           89 VKAKFIEEYPEALIEMN-PPFF-SQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        89 v~v~~~~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      ++++.+....   .+.+ .+++ .+||+||+|.++...+..|+++|+++++|+|.+...|
T Consensus        81 ~~V~~~~~~i---~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g  137 (231)
T cd00755          81 CEVDAVEEFL---TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG  137 (231)
T ss_pred             cEEEEeeeec---CHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            9999876532   2222 2333 4699999999999999999999999999999986555

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.95  E-value=6.4e-28  Score=212.71  Aligned_cols=133  Identities=29%  Similarity=0.377  Sum_probs=122.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      +|+|+|+||+|++++++|+++|+++|+|+|+|.++++|++||++++.+|+|++|+++++++++++||+++++.+......
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999987654322


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV  155 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  155 (456)
                      .  ...++++++|+||+|.++...+..++++|+++++|+|.+++.|+.|+++++.
T Consensus        81 ~--~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          81 D--NLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             h--hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence            1  1146688999999999999999999999999999999999999999999876

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.2e-27  Score=236.28  Aligned_cols=155  Identities=26%  Similarity=0.411  Sum_probs=139.1

Q ss_pred             HHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEE
Q 012768           12 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKA   91 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v   91 (456)
                      +-++++..+|||||||||+|||++|||++.|+++|+|||-|+++.+||+|||||+.++||++||.++++..+++||.+++
T Consensus         5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l   84 (603)
T KOG2013|consen    5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL   84 (603)
T ss_pred             HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC-ceeEecCCCC
Q 012768           92 KFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE-HTVVESKPDH  167 (456)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~-~~~~~~~~~~  167 (456)
                      ..+..+.... .-+.+|+++||+|+.+.++.++|..+|++|...++|+|.+|+.|+.||+.+...+ ..+.+.+|..
T Consensus        85 ~~yhanI~e~-~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~  160 (603)
T KOG2013|consen   85 VPYHANIKEP-KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKP  160 (603)
T ss_pred             EeccccccCc-chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCC
Confidence            8876643221 1245778899999999999999999999999999999999999999999998876 6666655543

>PRK07877 hypothetical protein; Provisional

Probab=99.94  E-value=2.2e-26  Score=247.27  Aligned_cols=144  Identities=17%  Similarity=0.198  Sum_probs=132.0

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA   80 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~   80 (456)
                      |+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|+|.|+.+||+|| +++..|+|++||+++++
T Consensus        90 ~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~  167 (722)
T PRK07877         90 LDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAAR  167 (722)
T ss_pred             hhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHH
Confidence            899999999999999999999999996 99999999999996 9999999999999999998 68999999999999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEE
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVR  152 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~  152 (456)
                      +|+++||+++|+++....   ++.+ .++++++|+||+|.|+...+..+|+.|.++++|+|+++..+  |.+.
T Consensus       168 ~l~~inp~i~v~~~~~~i---~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~  235 (722)
T PRK07877        168 RIAELDPYLPVEVFTDGL---TEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLD  235 (722)
T ss_pred             HHHHHCCCCEEEEEeccC---CHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcC
Confidence            999999999999987643   3333 56788999999999999999999999999999999987544  7774

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.93  E-value=2.2e-26  Score=211.31  Aligned_cols=142  Identities=24%  Similarity=0.364  Sum_probs=128.1

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      |+|--||+|.++.++|++++|+|+|+||+|+.++..|+|+|||+|+|+|.|.|+.+|+|||.-....++|++|+++++++
T Consensus        13 f~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~er   92 (263)
T COG1179          13 FGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKER   92 (263)
T ss_pred             hhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCC-cCCC-CCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMN-PPFF-SQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      ++++||+++|+.++.   .+++++ .+++ .+||+||+|.|+......|..+|+++++|+|.++..|
T Consensus        93 i~~InP~c~V~~~~~---f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag  156 (263)
T COG1179          93 IKQINPECEVTAIND---FITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG  156 (263)
T ss_pred             HHhhCCCceEeehHh---hhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence            999999999998764   344444 3444 4799999999999999999999999999999875433

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.4e-25  Score=212.03  Aligned_cols=146  Identities=22%  Similarity=0.354  Sum_probs=133.8

Q ss_pred             CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC
Q 012768           10 GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV   89 (456)
Q Consensus        10 G~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v   89 (456)
                      +.|..+.|.+++|||+|+||+|||++|||+++|++.+.++|-|+++.+||+|||+|++.|+|++||+++++++....|..
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~  110 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC  110 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH---cC-------CeEEEEeeccceeeEEeeeCCc
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE---AN-------VMLIFARSYGLTGFVRISVKEH  158 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~---~~-------ip~i~~~~~G~~G~v~~~~~~~  158 (456)
                      .|.....   ++.+...+|+++|++||+..|+...|.+||.+..+   .+       ||+|++++.|+.|++++..|+.
T Consensus       111 ~v~~h~~---kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~  186 (422)
T KOG2015|consen  111 VVVPHRQ---KIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGI  186 (422)
T ss_pred             EEeeeec---chhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCc
Confidence            9777554   45555788999999999999999999999986543   22       6999999999999999999995

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.92  E-value=3e-25  Score=213.62  Aligned_cols=136  Identities=17%  Similarity=0.160  Sum_probs=119.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccc--cCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC--VGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~d--vG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      +|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|  +|++||++++++|+++||+|+++.+....
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999999999999  99999999999999999999998775321


Q ss_pred             ------h---h-----hhc-CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           99 ------E---A-----LIE-MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        99 ------~---~-----~~~-~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                            .   .     ... ...++++++|+|+++.|+.+.|..++.+|..+++|+|. ...|+.|++....+-
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~  153 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGA  153 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCC
Confidence                  0   0     000 01356789999999999999999999999999999998 578999999997653

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.92  E-value=9.8e-25  Score=227.63  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=130.4

Q ss_pred             ccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcccccccccc---CcchHHHHHHHHHH
Q 012768            8 IWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV---GESKAKSVCAFLQE   84 (456)
Q Consensus         8 lwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dv---G~~Ka~~~~~~l~~   84 (456)
                      +...-+.++|++++|+|+||||+||.+|++|+++|||+|||+|+|.|+.+||+||++++.+|+   |++||++++++|++
T Consensus       327 llP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~  406 (664)
T TIGR01381       327 LHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKR  406 (664)
T ss_pred             cCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHH
Confidence            334455689999999999999999999999999999999999999999999999999999999   99999999999999


Q ss_pred             hCCCCEEEEEecCh---h-hhhc----------CC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768           85 LNDAVKAKFIEEYP---E-ALIE----------MN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus        85 lnp~v~v~~~~~~~---~-~~~~----------~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      +||+|+++.+....   . .+.+          .+ .++++++|+|+++.|+.+.|..++.+|..+++|+|++. .|+.|
T Consensus       407 InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg  485 (664)
T TIGR01381       407 IFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDS  485 (664)
T ss_pred             HCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccce
Confidence            99999998765431   0 0111          01 34678999999999999999999999999999999984 89999


Q ss_pred             eEEeeeCC
Q 012768          150 FVRISVKE  157 (456)
Q Consensus       150 ~v~~~~~~  157 (456)
                      ++.+..|-
T Consensus       486 ~lvmrhG~  493 (664)
T TIGR01381       486 YVVMRHGI  493 (664)
T ss_pred             EEEEEecc
Confidence            99998654

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.92  E-value=1.3e-24  Score=197.57  Aligned_cols=131  Identities=24%  Similarity=0.226  Sum_probs=115.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      +|+|+|+||+|++++++|+++|+++++|+|.|.|+.+|++||++. .+|+|++|+++++++|+++||+++++.+..... 
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~-   78 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKID-   78 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC-
Confidence            699999999999999999999999999999999999999999854 689999999999999999999999988765432 


Q ss_pred             hhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CCeEEEEeeccceeeEEeee
Q 012768          101 LIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARSYGLTGFVRISV  155 (456)
Q Consensus       101 ~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~~G~~G~v~~~~  155 (456)
                        ..+ .++++++|+||.|.++...+..+++.|.++ ++|||++...|.+|++.+..
T Consensus        79 --~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~  133 (174)
T cd01487          79 --ENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIK  133 (174)
T ss_pred             --hhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEE
Confidence              222 467889999999999989888788777776 99999999999999887654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=99.91  E-value=2e-24  Score=213.63  Aligned_cols=139  Identities=14%  Similarity=0.169  Sum_probs=127.7

Q ss_pred             Ccccccc---cC-HHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHH
Q 012768            2 SMSTLRI---WG-EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS   77 (456)
Q Consensus         2 y~RQlrl---wG-~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~   77 (456)
                      |+||+.+   || .++|++|++++|+   |||+|+.++..|+. |||+++|+|+|.|+.+||+  ++++++|+|++|+++
T Consensus        55 y~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~  128 (318)
T TIGR03603        55 IIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRD  128 (318)
T ss_pred             HHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHH
Confidence            7899999   67 5589999999999   99999999999999 9999999999999999999  899999999999999


Q ss_pred             HHHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHH--HHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768           78 VCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIK--LDRICREANVMLIFARSYGLTGFVRISV  155 (456)
Q Consensus        78 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~--l~~~~~~~~ip~i~~~~~G~~G~v~~~~  155 (456)
                      ++++|.++||.++++...           +.++++|+||+|.|+...+..  +|++|.++++|||+++..|+.|++...+
T Consensus       129 a~~~L~~lnp~v~i~~~~-----------~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~  197 (318)
T TIGR03603       129 LTSNLDALELTKNVDELK-----------DLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTL  197 (318)
T ss_pred             HHHHHHHhCCCCEEeeHH-----------HHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEe
Confidence            999999999999987532           346789999999999887755  9999999999999999999999999877


Q ss_pred             CC
Q 012768          156 KE  157 (456)
Q Consensus       156 ~~  157 (456)
                      |+
T Consensus       198 P~  199 (318)
T TIGR03603       198 PP  199 (318)
T ss_pred             CC
Confidence            64

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.1e-23  Score=219.44  Aligned_cols=158  Identities=25%  Similarity=0.329  Sum_probs=145.4

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCCccccccccccCcchHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESKAK   76 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~   76 (456)
                      ||-|++++|..-|+||.+.++.+||+|++|||.+||++++|+     |.|++.|.|.++.+||+|||++++.|||++|++
T Consensus       413 YD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe  492 (1013)
T KOG2012|consen  413 YDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSE  492 (1013)
T ss_pred             cccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHH
Confidence            889999999999999999999999999999999999999999     469999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEEEecChhhhhcC--CcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEee
Q 012768           77 SVCAFLQELNDAVKAKFIEEYPEALIEM--NPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS  154 (456)
Q Consensus        77 ~~~~~l~~lnp~v~v~~~~~~~~~~~~~--~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~  154 (456)
                      +++.....+||++++.+.......-++.  +.+||.+.|+|..+.|+..+|..+.+.|.-+.+|++.+++.|..|.+.+.
T Consensus       493 ~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVv  572 (1013)
T KOG2012|consen  493 VAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVV  572 (1013)
T ss_pred             HHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEE
Confidence            9999999999999988876544333332  46889999999999999999999999999999999999999999999998


Q ss_pred             eCCce
Q 012768          155 VKEHT  159 (456)
Q Consensus       155 ~~~~~  159 (456)
                      .|-++
T Consensus       573 vPhlT  577 (1013)
T KOG2012|consen  573 VPHLT  577 (1013)
T ss_pred             ecccc
Confidence            88643

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.91  E-value=5.4e-24  Score=197.43  Aligned_cols=142  Identities=25%  Similarity=0.287  Sum_probs=118.5

Q ss_pred             cccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC
Q 012768            7 RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN   86 (456)
Q Consensus         7 rlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln   86 (456)
                      +-.|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+++||+||++ ..+++|++|+++++++|+++|
T Consensus         9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~in   87 (200)
T TIGR02354         9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEIN   87 (200)
T ss_pred             HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHC
Confidence            4479999999999999999999999999999999999999999999999999999964 668999999999999999999


Q ss_pred             CCCEEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHH-HHHHHcCCeEEEEeeccceeeEEe
Q 012768           87 DAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLD-RICREANVMLIFARSYGLTGFVRI  153 (456)
Q Consensus        87 p~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~-~~~~~~~ip~i~~~~~G~~G~v~~  153 (456)
                      |+++++.+....   .+.+ .+++.++|+||.|.++...+..++ ..++.++.+++.+ ..|+.|+.+.
T Consensus        88 p~~~i~~~~~~i---~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~~g~~~~  152 (200)
T TIGR02354        88 PYTEIEAYDEKI---TEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGLAGYDDA  152 (200)
T ss_pred             CCCEEEEeeeeC---CHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-EeccccCCCC
Confidence            999998876533   2223 456889999999988888877755 4555555544444 3677777643

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06153 hypothetical protein; Provisional

Probab=99.88  E-value=2.2e-22  Score=199.59  Aligned_cols=128  Identities=16%  Similarity=0.066  Sum_probs=113.5

Q ss_pred             HHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccc-cccccccCc--chHHHHHHHHHHhCCC
Q 012768           12 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNF-MLDESCVGE--SKAKSVCAFLQELNDA   88 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f-~~~~~dvG~--~Ka~~~~~~l~~lnp~   88 (456)
                      +.|++|++++|+||||||+|+.++..|+++||++|+|+|+|.|+.+||+||+ +++.+|+|+  +||+++++++.++||.
T Consensus       169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~  248 (393)
T PRK06153        169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRG  248 (393)
T ss_pred             HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCe
Confidence            5699999999999999999999999999999999999999999999999998 568999999  9999999999999986


Q ss_pred             CEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768           89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS  144 (456)
Q Consensus        89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~  144 (456)
                      +.  ++..   .+.+.+.+.+.++|+||+|.|+...+..++++|.++++|||++++
T Consensus       249 I~--~~~~---~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~  299 (393)
T PRK06153        249 IV--PHPE---YIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM  299 (393)
T ss_pred             EE--EEee---cCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence            54  3332   233233446789999999999999999999999999999999875

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.85  E-value=4.7e-21  Score=181.53  Aligned_cols=132  Identities=19%  Similarity=0.179  Sum_probs=113.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCC-----C-----cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGI-----G-----SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN   86 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv-----~-----~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln   86 (456)
                      -+.++|+|||+||+||+++++|+++|+     |     +++|+|+|.|+++||+|| ++.++|||++||+++++++...|
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence            368899999999999999999999973     4     899999999999999999 56678999999999999999888


Q ss_pred             CCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH---cCCeEEEEeeccceeeEEeee
Q 012768           87 DAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE---ANVMLIFARSYGLTGFVRISV  155 (456)
Q Consensus        87 p~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~---~~ip~i~~~~~G~~G~v~~~~  155 (456)
                       .++++++.....   +  ..++.++|+||.|.|+...|..|++.|.+   .++||+.+++.+.-|++.+-.
T Consensus        88 -~~~i~a~~~~~~---~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~  153 (244)
T TIGR03736        88 -GTDWTAHPERVE---R--SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQ  153 (244)
T ss_pred             -CceEEEEEeeeC---c--hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEe
Confidence             788777654322   1  23356899999999999999999999988   248999999999999998843

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=7.1e-20  Score=172.80  Aligned_cols=139  Identities=16%  Similarity=0.210  Sum_probs=123.5

Q ss_pred             cccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHH
Q 012768            3 MSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFL   82 (456)
Q Consensus         3 ~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l   82 (456)
                      .|...++|.+||+||+++-|+||||||+|+.++-.|+|+|+++|.|+|+|.|+.+.|+||...+..|||.||+.++++++
T Consensus        58 arN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~  137 (430)
T KOG2018|consen   58 ARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHF  137 (430)
T ss_pred             HhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHH
Confidence            36678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEEEecChhhhhcCC-cCC-CCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768           83 QELNDAVKAKFIEEYPEALIEMN-PPF-FSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS  144 (456)
Q Consensus        83 ~~lnp~v~v~~~~~~~~~~~~~~-~~~-~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~  144 (456)
                      +++.|++++.+....   .+.++ .++ +.+-|+|++|.|+......|-++|..+++++|.+..
T Consensus       138 skiaPw~eIdar~~l---~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~G  198 (430)
T KOG2018|consen  138 SKIAPWCEIDARNML---WTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTG  198 (430)
T ss_pred             HhhCccceecHHHhh---cCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccC
Confidence            999999998875532   22223 233 346899999999999999999999999999987643

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=99.69  E-value=1.5e-16  Score=148.19  Aligned_cols=157  Identities=20%  Similarity=0.270  Sum_probs=129.9

Q ss_pred             Ccccccc--cC-HHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768            2 SMSTLRI--WG-EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV   78 (456)
Q Consensus         2 y~RQlrl--wG-~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~   78 (456)
                      |||-+.|  +| ...-+|++...|.|+|.||+|+-+|..|.|.|||++.|+|.|.|+..|.+|- ||++...|.+|++++
T Consensus        62 YSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~P~QaGlsKv~AA  140 (422)
T KOG2336|consen   62 YSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPDQAGLSKVDAA  140 (422)
T ss_pred             HHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccCcccccchHHHHH
Confidence            6666655  45 3456899999999999999999999999999999999999999999999997 678889999999999


Q ss_pred             HHHHHHhCCCCEEEEEecChhh------hhc--CCcCC--CCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeec--c
Q 012768           79 CAFLQELNDAVKAKFIEEYPEA------LIE--MNPPF--FSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSY--G  146 (456)
Q Consensus        79 ~~~l~~lnp~v~v~~~~~~~~~------~~~--~~~~~--~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~--G  146 (456)
                      ...|.++||+|.+++.+-+...      +.+  .+-.+  =+..|+|+.|.++.++|..+|..|-..+.-|+..++.  .
T Consensus       141 ~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnA  220 (422)
T KOG2336|consen  141 VQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENA  220 (422)
T ss_pred             HHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCcccc
Confidence            9999999999998876543211      111  11112  2358999999999999999999999999888887664  6


Q ss_pred             ceeeEEeeeCCce
Q 012768          147 LTGFVRISVKEHT  159 (456)
Q Consensus       147 ~~G~v~~~~~~~~  159 (456)
                      ..|++.+..|+.+
T Consensus       221 VSGHIQ~i~PGet  233 (422)
T KOG2336|consen  221 VSGHIQLIVPGET  233 (422)
T ss_pred             ccceeEEecCCcc
Confidence            7899999888733

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]

Probab=99.47  E-value=7e-14  Score=140.24  Aligned_cols=145  Identities=17%  Similarity=0.200  Sum_probs=117.9

Q ss_pred             HHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcccccccccc---CcchHHHHHHHHHHhCCC
Q 012768           12 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV---GESKAKSVCAFLQELNDA   88 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dv---G~~Ka~~~~~~l~~lnp~   88 (456)
                      -..+++.+.++|++|+|.+||.||+||+-.||++||++|..+|..+|-.||.+++-+|.   |++||++++++|++++|.
T Consensus       333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~  412 (669)
T KOG2337|consen  333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPS  412 (669)
T ss_pred             cchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcc
Confidence            34578999999999999999999999999999999999999999999999999998886   599999999999999998


Q ss_pred             CEEEEEecC---hh-hhhc-----------CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768           89 VKAKFIEEY---PE-ALIE-----------MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI  153 (456)
Q Consensus        89 v~v~~~~~~---~~-~~~~-----------~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~  153 (456)
                      ++-+-+...   |. .+.+           .-..++++.|+|+..+|+.+.|..-.-+|..+++-.|.+ ..||..|+..
T Consensus       413 m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINa-ALGFDsylVM  491 (669)
T KOG2337|consen  413 MEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINA-ALGFDSYLVM  491 (669)
T ss_pred             ccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeee-ecccceeEEE
Confidence            864432210   00 0110           013457889999999999888877666777777766665 6899999998


Q ss_pred             eeCC
Q 012768          154 SVKE  157 (456)
Q Consensus       154 ~~~~  157 (456)
                      ..|.
T Consensus       492 RHG~  495 (669)
T KOG2337|consen  492 RHGT  495 (669)
T ss_pred             ecCC
Confidence            8765

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.24  E-value=2.3e-11  Score=126.82  Aligned_cols=127  Identities=17%  Similarity=0.144  Sum_probs=101.2

Q ss_pred             CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC
Q 012768           10 GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV   89 (456)
Q Consensus        10 G~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v   89 (456)
                      |.+.-++.++++|+|+|.||+|+.++.+|+.+|+++|..+|.|.+ .+|++|        ||+. ++.+++    .||.+
T Consensus       120 ~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v  185 (637)
T TIGR03693       120 GALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDAL  185 (637)
T ss_pred             chhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCC
Confidence            445666779999999999999999999999999999999999999 999998        6765 554443    99999


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCC--ChHHHHHHHHHHHHcC---CeEEEEeeccceeeEEe
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQL--GEEKMIKLDRICREAN---VMLIFARSYGLTGFVRI  153 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~l~~~~~~~~---ip~i~~~~~G~~G~v~~  153 (456)
                      .++.++..   ....-.+.++++|+||+..+  ......++|..|.+.+   +|++.++..++.|-+|.
T Consensus       186 ~v~~i~~~---~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft  251 (637)
T TIGR03693       186 LVQEIDFA---EDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ  251 (637)
T ss_pred             ceEeccCC---cchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC
Confidence            99887641   11112466889999997655  3456889999999999   67777777777777666

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.69  E-value=9.2e-08  Score=83.07  Aligned_cols=123  Identities=24%  Similarity=0.320  Sum_probs=94.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHH---HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLV---LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLv---l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +..|.++|||-+|.-++-+|.   +-|+.+|.++|.+.|++.|+--  ..-...+|.+|++-++ +|....+.=+|+.  
T Consensus        18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a--   92 (217)
T COG4015          18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKVGEYKVDFIK-RLGRVHFGRRVEA--   92 (217)
T ss_pred             CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCcchhHHHHHH-HhCcCCCCceeec--
Confidence            456999999999999999997   7899999999999999999862  2334568999997663 4444555556555  


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEc---CCChHHHHHHHHHHHHcCCeEEEEeeccceee
Q 012768           96 EYPEALIEMNPPFFSQFTLVVAT---QLGEEKMIKLDRICREANVMLIFARSYGLTGF  150 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~---~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~  150 (456)
                       .++.++.+|...+.+ |+|+.|   .+..+....|.++|++.++.-|  ++.|.||+
T Consensus        93 -~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti--sT~GVFGi  146 (217)
T COG4015          93 -FPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI--STNGVFGI  146 (217)
T ss_pred             -ccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe--ecCceeec
Confidence             455666677777766 777654   3566778899999999998655  66788885

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.69  E-value=0.00042  Score=64.60  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .|++.+|+|||.|.+|...++.|...| .++|+++++.      .                   +.+.++.+.-.+....
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------------------~~l~~l~~~~~i~~~~   60 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------------------ENLVKLVEEGKIRWKQ   60 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------------------HHHHHHHhCCCEEEEe
Confidence            478899999999999999999999999 6899996431      1                   1222222222223222


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                      .   .+   ....+.++|+||+++++.+.-..+.+.|. .++++-.+
T Consensus        61 ~---~~---~~~~l~~adlViaaT~d~elN~~i~~~a~-~~~lvn~~  100 (202)
T PRK06718         61 K---EF---EPSDIVDAFLVIAATNDPRVNEQVKEDLP-ENALFNVI  100 (202)
T ss_pred             c---CC---ChhhcCCceEEEEcCCCHHHHHHHHHHHH-hCCcEEEC
Confidence            1   11   23346789999998888787788888994 46654444

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.58  E-value=0.00014  Score=63.28  Aligned_cols=77  Identities=16%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .+++++|+|+|+||.|..+++.|...|++++++++          |+         ..|++.+++.+    +...+....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~~~~~~   65 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN----------RT---------PERAEALAEEF----GGVNIEAIP   65 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE----------SS---------HHHHHHHHHHH----TGCSEEEEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE----------CC---------HHHHHHHHHHc----Cccccceee
Confidence            68999999999999999999999999999999986          22         23666666655    444444433


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      ..  ++    .+.+.++|+||.|+..
T Consensus        66 ~~--~~----~~~~~~~DivI~aT~~   85 (135)
T PF01488_consen   66 LE--DL----EEALQEADIVINATPS   85 (135)
T ss_dssp             GG--GH----CHHHHTESEEEE-SST
T ss_pred             HH--HH----HHHHhhCCeEEEecCC
Confidence            21  11    1345689999977644

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.57  E-value=0.00024  Score=69.78  Aligned_cols=76  Identities=18%  Similarity=0.192  Sum_probs=58.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ++.++|+|+|+||+|..++..|+..|+++++|+|.+                   ..|++.+++.+.+.++.+.+.... 
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~-  184 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS-  184 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence            556789999999999999999999999999999854                   258888888888777765443221 


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                         .+    .+.+.++|+||.|+
T Consensus       185 ---~~----~~~~~~aDiVInaT  200 (284)
T PRK12549        185 ---DL----AAALAAADGLVHAT  200 (284)
T ss_pred             ---ch----HhhhCCCCEEEECC
Confidence               11    12346789999775

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.53  E-value=0.00029  Score=71.40  Aligned_cols=99  Identities=22%  Similarity=0.331  Sum_probs=67.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCCEEEEEecCh
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVKAKFIEEYP   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v~v~~~~~~~   98 (456)
                      .+|+|+|+|++|+.+|.+|+..|.+.|++.|...                       ..++++.+.. +.++...++...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~~v~~~~vD~~d   58 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGGKVEALQVDAAD   58 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccccceeEEecccC
Confidence            5899999999999999999999999999998322                       1223333332 233333333221


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeec
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSY  145 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~  145 (456)
                        . +...+.++++|+||.+..+.- -..+.+.|.+.++++++....
T Consensus        59 --~-~al~~li~~~d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~  101 (389)
T COG1748          59 --V-DALVALIKDFDLVINAAPPFV-DLTILKACIKTGVDYVDTSYY  101 (389)
T ss_pred             --h-HHHHHHHhcCCEEEEeCCchh-hHHHHHHHHHhCCCEEEcccC
Confidence              1 011356788999998876543 347888999999998877543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.52  E-value=0.00084  Score=62.68  Aligned_cols=101  Identities=18%  Similarity=0.188  Sum_probs=70.0

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      |++.+|+|||.|.+|..-++.|...|. ++|+++++.-                     ..+ +.+.+.   -+++.+..
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l-~~l~~~---~~i~~~~~   60 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SEL-TLLAEQ---GGITWLAR   60 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHH-HHHHHc---CCEEEEeC
Confidence            778899999999999999999999996 7999986431                     001 112221   13444333


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      ..      ..+.+.++++||++++..+....+...|++.++++-.++.-....
T Consensus        61 ~~------~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~  107 (205)
T TIGR01470        61 CF------DADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS  107 (205)
T ss_pred             CC------CHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe
Confidence            21      123467899999888776777789999999999976555444433

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.20  E-value=0.0048  Score=55.07  Aligned_cols=89  Identities=12%  Similarity=0.140  Sum_probs=61.7

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .|++.+|+|+|.|.+|...++.|...|. .+++++++..                         +.+.++ +.+.  ...
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~-------------------------~~l~~l-~~i~--~~~   60 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC-------------------------KEMKEL-PYIT--WKQ   60 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC-------------------------HHHHhc-cCcE--EEe
Confidence            5789999999999999999999999997 6889865432                         112222 1222  211


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                         ..+   .+..+.++|+||+++++.+.-..+...|++. .++-
T Consensus        61 ---~~~---~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~-~~vn   98 (157)
T PRK06719         61 ---KTF---SNDDIKDAHLIYAATNQHAVNMMVKQAAHDF-QWVN   98 (157)
T ss_pred             ---ccc---ChhcCCCceEEEECCCCHHHHHHHHHHHHHC-CcEE
Confidence               112   2334678999999988877777888888774 4433

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.15  E-value=0.0017  Score=53.63  Aligned_cols=88  Identities=17%  Similarity=0.193  Sum_probs=62.1

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .|++.+|+|||.|.+|..-++.|..+| .++|++.++. +..                         +   ..++..  .
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~-------------------------~---~~i~~~--~   51 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFS-------------------------E---GLIQLI--R   51 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHH-------------------------H---TSCEEE--E
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhh-------------------------h---hHHHHH--h
Confidence            478999999999999999999999999 6899998664 000                         0   223322  1


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                      ..   +    .+.+.++++|++++++......+.+.|++.++|+-.+
T Consensus        52 ~~---~----~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   52 RE---F----EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV   91 (103)
T ss_dssp             SS--------GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred             hh---H----HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence            11   1    1346789999999888888889999999999985544

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.04  E-value=0.0077  Score=56.75  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh--CCCCEEEE
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL--NDAVKAKF   93 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l--np~v~v~~   93 (456)
                      .+++.+|+|||.|.+|..=++.|..+|. ++|++-++..                         ..+.++  ++.++  +
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~-------------------------~el~~l~~~~~i~--~   73 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS-------------------------KEFLDLKKYGNLK--L   73 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEE--E
Confidence            4568899999999999999999999994 5999865531                         111112  23333  3


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeec
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSY  145 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~  145 (456)
                      +...   +   .++.+.++++||+++++...-..+...|+..++++..+..-
T Consensus        74 ~~r~---~---~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p  119 (223)
T PRK05562         74 IKGN---Y---DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDY  119 (223)
T ss_pred             EeCC---C---ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCc
Confidence            3321   1   23346789999999888888889999999999987766443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.58  E-value=0.019  Score=54.47  Aligned_cols=98  Identities=18%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-Ch
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-YP   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~~   98 (456)
                      .+++|+|+|-+|..+|++|+..|-. ++++|.|.-                   +   +.+.+.+- ..+.+...+. ++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~-------------------~---~~~~~~~~-~~~~~v~gd~t~~   56 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEE-------------------R---VEEFLADE-LDTHVVIGDATDE   56 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHH-------------------H---HHHHhhhh-cceEEEEecCCCH
Confidence            3789999999999999999999976 666664431                   1   11212211 1222222222 22


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH-cCCeEEEEee
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE-ANVMLIFARS  144 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~-~~ip~i~~~~  144 (456)
                      ..+.   ..-+.++|++|+++.+...-..+...+.+ +++|-+.+..
T Consensus        57 ~~L~---~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~  100 (225)
T COG0569          57 DVLE---EAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA  100 (225)
T ss_pred             HHHH---hcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence            2221   12356899999777665554555555544 7999887754

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.44  E-value=0.0043  Score=63.41  Aligned_cols=74  Identities=19%  Similarity=0.267  Sum_probs=54.5

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .|..++|+|||+|-+|.-+|++|...|++.|+|.          ||+         ..||+.+++.+.     .++...+
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT---------~erA~~La~~~~-----~~~~~l~  230 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRT---------LERAEELAKKLG-----AEAVALE  230 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCC---------HHHHHHHHHHhC-----CeeecHH
Confidence            3788999999999999999999999999999997          343         246776666665     2222211


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                              +..+++.++|+||.++..
T Consensus       231 --------el~~~l~~~DvVissTsa  248 (414)
T COG0373         231 --------ELLEALAEADVVISSTSA  248 (414)
T ss_pred             --------HHHHhhhhCCEEEEecCC
Confidence                    123567799999976644

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.41  E-value=0.0076  Score=59.15  Aligned_cols=77  Identities=17%  Similarity=0.139  Sum_probs=51.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ++.++|+|+|+||.|..++..|...|+++++|++.+                   ..|++.+++.+.... .  +.....
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~~  180 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLEG  180 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceeccc
Confidence            457789999999999999999999999999999632                   137777776654321 1  111110


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                       ...+    ...+.++|+||.|+.
T Consensus       181 -~~~~----~~~~~~~DiVInaTp  199 (282)
T TIGR01809       181 -DSGG----LAIEKAAEVLVSTVP  199 (282)
T ss_pred             -hhhh----hhcccCCCEEEECCC
Confidence             0111    123457999997764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.38  E-value=0.013  Score=57.72  Aligned_cols=84  Identities=10%  Similarity=0.084  Sum_probs=54.0

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||+|..++..|+..|++++++++.+.-                ...|++.+++.+.+..+.+.+...+.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d~  187 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYDL  187 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEech
Confidence            45678999999999999999999999999999873210                01366666666665555544433221


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      .  .. +.-.+.+..+|+||.|+
T Consensus       188 ~--~~-~~~~~~~~~~DilINaT  207 (289)
T PRK12548        188 N--DT-EKLKAEIASSDILVNAT  207 (289)
T ss_pred             h--hh-hHHHhhhccCCEEEEeC
Confidence            1  00 00012344668888654

>PRK04148 hypothetical protein; Provisional

Probab=96.37  E-value=0.02  Score=49.52  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=67.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ++.+|++||+| .|..+|..|...|. .++.+|-+.                   ..++    ..++.  .+.  ++.. 
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~----~a~~~--~~~--~v~d-   65 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVE----KAKKL--GLN--AFVD-   65 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHH----HHHHh--CCe--EEEC-
Confidence            34679999999 99999999999996 688888322                   1222    22222  122  2221 


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEe
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR  143 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~  143 (456)
                        ++.+-+.++.+++|+|.....+.+....+-+++++.+.+++..-
T Consensus        66 --Dlf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~  109 (134)
T PRK04148         66 --DLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKP  109 (134)
T ss_pred             --cCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence              23334556678999999999998888899999999999987654

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=96.33  E-value=0.023  Score=52.52  Aligned_cols=85  Identities=14%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             CHHHHHHHhcCcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCC
Q 012768           10 GEQGQAALEKASVCLLNCGPTGSE-TLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA   88 (456)
Q Consensus        10 G~~~q~~L~~~~VlIiG~gglG~e-iaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~   88 (456)
                      +.+.+++|++++|.|+|.|+.|+. ++..|..+||+.+.                                         
T Consensus        96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~-----------------------------------------  134 (193)
T TIGR03882        96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP-----------------------------------------  134 (193)
T ss_pred             HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-----------------------------------------
Confidence            356789999999999999999988 99999999998654                                         


Q ss_pred             CEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEee
Q 012768           89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS  154 (456)
Q Consensus        89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~  154 (456)
                            . .            .+.++|++.+........+|+...+.+.||+.+...|..+.+--.
T Consensus       135 ------~-~------------a~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~  181 (193)
T TIGR03882       135 ------S-E------------ADLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPL  181 (193)
T ss_pred             ------C-C------------CCEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCe
Confidence                  0 0            024567666766677889999999999999999998888776553

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.25  E-value=0.011  Score=57.91  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ++.++|+|+|+||.|..++-.|+..|+++++|+|.+.                   .|++.+++.+.+..+...+.... 
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~-  184 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVD-  184 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecC-
Confidence            4567899999999999999999999999999997432                   37877777765444432222211 


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                       ...+    .+.+..+|+||.|+
T Consensus       185 -~~~~----~~~~~~~divINaT  202 (283)
T PRK14027        185 -ARGI----EDVIAAADGVVNAT  202 (283)
T ss_pred             -HhHH----HHHHhhcCEEEEcC
Confidence             1010    11234688888665

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.23  E-value=0.0098  Score=60.99  Aligned_cols=95  Identities=23%  Similarity=0.208  Sum_probs=60.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           22 VCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        22 VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      |+|+|+|.+|+.+++.|+..+-. ++++.|.+.                   .|++.+++.+  ....++....+..  +
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~--~~~~~~~~~~d~~--~   57 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL--LGDRVEAVQVDVN--D   57 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT----TTTTEEEEE--TT--T
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc--cccceeEEEEecC--C
Confidence            78999999999999999999855 899987332                   2343333332  3334444433322  1


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEE
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIF  141 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~  141 (456)
                      ..+ -.++++++|+||.|..+. ....+.+.|.+.++++++
T Consensus        58 ~~~-l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD   96 (386)
T PF03435_consen   58 PES-LAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD   96 (386)
T ss_dssp             HHH-HHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE
T ss_pred             HHH-HHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec
Confidence            110 134578899999887665 566889999999999887

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.19  E-value=0.017  Score=56.43  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=54.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      +..+|+|+|+||.+..++..|...|+.+|+|++.+                   ..|++.+++.+.+..+.+......  
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~--  183 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALA--  183 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccccccccccc--
Confidence            35889999999999999999999999999998522                   257888888888877633322111  


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCC
Q 012768           98 PEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                             ..+...++|+||.|+.
T Consensus       184 -------~~~~~~~~dliINaTp  199 (283)
T COG0169         184 -------DLEGLEEADLLINATP  199 (283)
T ss_pred             -------ccccccccCEEEECCC
Confidence                   0111116899997653

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.18  E-value=0.012  Score=51.45  Aligned_cols=74  Identities=22%  Similarity=0.239  Sum_probs=51.5

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCc-EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC--EEEEEe
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGS-ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV--KAKFIE   95 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~-itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v--~v~~~~   95 (456)
                      .||+|+|+ |.+|+.+|-.|+..|+.+ +.|+|.+                   ..|++..+.-|....+..  .+....
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~   61 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS   61 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence            37999999 999999999999999966 9999832                   235666555565543322  322222


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                              ...+.+++.|+||.+..
T Consensus        62 --------~~~~~~~~aDivvitag   78 (141)
T PF00056_consen   62 --------GDYEALKDADIVVITAG   78 (141)
T ss_dssp             --------SSGGGGTTESEEEETTS
T ss_pred             --------ccccccccccEEEEecc
Confidence                    13345779999998753

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.08  E-value=0.046  Score=57.48  Aligned_cols=104  Identities=13%  Similarity=0.154  Sum_probs=71.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .|++.+|+|||.|.++..=++.|..+|. ++|++-++.-                         ..+.++-..-+++.+.
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~   62 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE   62 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence            5789999999999999999999999996 6898854321                         1122222222333333


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFV  151 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v  151 (456)
                      ..   +   ..+.+.++++||+++++.+.-..+.+.|+..++++-.++.-....++
T Consensus        63 ~~---~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~  112 (457)
T PRK10637         63 GP---F---DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFI  112 (457)
T ss_pred             CC---C---ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEE
Confidence            22   1   23346789999999888888889999999999986666544433333

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.94  E-value=0.031  Score=52.31  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=67.8

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .|.+++|+|||.|.+|..=++.|..+|.. ++++-++. ++                    .+ ..+.+-++   +..+.
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~~--------------------el-~~~~~~~~---i~~~~   62 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-EP--------------------EL-KALIEEGK---IKWIE   62 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-cH--------------------HH-HHHHHhcC---cchhh
Confidence            47789999999999999999999999985 77765433 11                    11 11222222   22222


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      .   .+   ..+.+.++++||.++++...-..+...|+++++|+-.++--.+
T Consensus        63 ~---~~---~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~  108 (210)
T COG1648          63 R---EF---DAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPEL  108 (210)
T ss_pred             c---cc---ChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCccc
Confidence            1   11   2334556889998888888888999999999998666654443

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.89  E-value=0.027  Score=55.13  Aligned_cols=74  Identities=15%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +.+++|+|+|+||+|..+++.|...|+.++++++.+                   ..|++.+++.+....+ +.+   ..
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~  177 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL  177 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence            567899999999999999999999999999999732                   1356666665543321 221   10


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                             ...+.+.++|+||.|+.
T Consensus       178 -------~~~~~~~~~DivInaTp  194 (278)
T PRK00258        178 -------ELQEELADFDLIINATS  194 (278)
T ss_pred             -------cchhccccCCEEEECCc
Confidence                   01234568999997763

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.87  E-value=0.013  Score=60.66  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=32.5

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .+.+.+|+|+|+|+.|..++++|...|+.+|+++.
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n  212 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN  212 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence            36788999999999999999999999999999984

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.83  E-value=0.035  Score=54.66  Aligned_cols=83  Identities=11%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||.+..++-.|+..|+++++|++.+.                -...|++.+++.+....+ ..+.....
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~~  184 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTDL  184 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEech
Confidence            4667999999999999999999999999999997321                013477777776654322 22222211


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      .  .. ..-.+.+.++|+||.|+
T Consensus       185 ~--~~-~~l~~~~~~aDivINaT  204 (288)
T PRK12749        185 A--DQ-QAFAEALASADILTNGT  204 (288)
T ss_pred             h--hh-hhhhhhcccCCEEEECC
Confidence            0  00 00011245789998765

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.63  E-value=0.036  Score=55.25  Aligned_cols=74  Identities=26%  Similarity=0.225  Sum_probs=51.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC-EEEEEec
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV-KAKFIEE   96 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v-~v~~~~~   96 (456)
                      ..+|.|+|+|.+|+.+|-.|+..|+. .+.|+|-                   ...|++..+.-|....|.. .+.....
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~   66 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG   66 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence            46999999999999999999999996 6999982                   2345666666666665432 2222111


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                              +.+.++++|+||.+.
T Consensus        67 --------~~~~~~~adivIita   81 (315)
T PRK00066         67 --------DYSDCKDADLVVITA   81 (315)
T ss_pred             --------CHHHhCCCCEEEEec
Confidence                    223367999999764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.61  E-value=0.0063  Score=54.58  Aligned_cols=117  Identities=20%  Similarity=0.190  Sum_probs=65.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh-
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP-   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~-   98 (456)
                      .+|.+||+|..|+.+|+||..+|.. ++++|.+.-....+..        .|-..++...+..++.  ++-+..+.... 
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~--------~g~~~~~s~~e~~~~~--dvvi~~v~~~~~   70 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAE--------AGAEVADSPAEAAEQA--DVVILCVPDDDA   70 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHH--------TTEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHH--------hhhhhhhhhhhHhhcc--cceEeecccchh
Confidence            4799999999999999999999985 8888844311111111        1111122222333322  34333332211 


Q ss_pred             -hhhhcC-C-cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           99 -EALIEM-N-PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        99 -~~~~~~-~-~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                       ..+... + ...+..=+++|+ ++.+......+.+.+...++.++.+...|.
T Consensus        71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg  123 (163)
T PF03446_consen   71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG  123 (163)
T ss_dssp             HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred             hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence             111111 1 122344567775 456677788999999999999999988774

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.61  E-value=0.069  Score=44.51  Aligned_cols=86  Identities=22%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhhh
Q 012768           22 VCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEAL  101 (456)
Q Consensus        22 VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~  101 (456)
                      |+|+|+|.+|.++++.|...| -.++++|.+.-                   +    .+.+.+..  +.  ++..++...
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~--~~--~i~gd~~~~   52 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG--VE--VIYGDATDP   52 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT--SE--EEES-TTSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc--cc--cccccchhh
Confidence            689999999999999999944 67999986541                   1    13333332  33  233332211


Q ss_pred             hcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc
Q 012768          102 IEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA  135 (456)
Q Consensus       102 ~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~  135 (456)
                      ......-+.+++.|+++.++......+...+++.
T Consensus        53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~   86 (116)
T PF02254_consen   53 EVLERAGIEKADAVVILTDDDEENLLIALLAREL   86 (116)
T ss_dssp             HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred             hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence            1001123558888888877767667777777773

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.56  E-value=0.027  Score=56.00  Aligned_cols=72  Identities=28%  Similarity=0.267  Sum_probs=49.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC----CCEEEEE
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKFI   94 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp----~v~v~~~   94 (456)
                      .+|.|+|+|++|+.+|..|+..|+. +++++|.+                   ..|++..+..|....+    .+.+.. 
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~-   60 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA-   60 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence            3799999999999999999999996 89999842                   2355555565555432    223221 


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                       .        +.+.+.++|+||.|..
T Consensus        61 -~--------~~~~l~~aDIVIitag   77 (306)
T cd05291          61 -G--------DYSDCKDADIVVITAG   77 (306)
T ss_pred             -C--------CHHHhCCCCEEEEccC
Confidence             1        1122568999997653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.55  E-value=0.026  Score=49.71  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++..+|+|+|+|++|..+++.|...|...++++|.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r   51 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR   51 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence            45789999999999999999999998778898873

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.31  E-value=0.06  Score=53.51  Aligned_cols=70  Identities=19%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC-----CCEEEEE
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND-----AVKAKFI   94 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp-----~v~v~~~   94 (456)
                      +|.|||+|.+|+.+|-.|+..|+ +.+.|+|-                   .+.|++..+.-|....+     .+++.. 
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~-   60 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRA-   60 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEE-
Confidence            68999999999999999999999 56999982                   23455555555555433     233332 


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                       .        +.+.++++|+||.|.
T Consensus        61 -~--------~y~~~~~aDivvita   76 (307)
T cd05290          61 -G--------DYDDCADADIIVITA   76 (307)
T ss_pred             -C--------CHHHhCCCCEEEECC
Confidence             1        123467899999764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.21  E-value=0.021  Score=54.10  Aligned_cols=37  Identities=22%  Similarity=0.432  Sum_probs=34.8

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d   52 (456)
                      .+++.+|+|+|+|+.|..+++.|...|++  +|+++|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            47888999999999999999999999999  99999976

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.06  E-value=0.046  Score=56.73  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r  212 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR  212 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence            67799999999999999999999999999999874

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=94.99  E-value=0.063  Score=53.46  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +...+|+|+|+|.+|..++++|...|+..++++|.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r  210 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR  210 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence            57899999999999999999999999999999974

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.97  E-value=0.051  Score=43.73  Aligned_cols=89  Identities=20%  Similarity=0.192  Sum_probs=50.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC--CcEEEE-eCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI--GSITVI-DGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv--~~itlv-D~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      +|.|||+|.+|..+++.|+..|+  .++.++ +.+.                   .|+    +.+.+..+ +.+...  .
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-------------------~~~----~~~~~~~~-~~~~~~--~   54 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP-------------------EKA----AELAKEYG-VQATAD--D   54 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH-------------------HHH----HHHHHHCT-TEEESE--E
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH-------------------HHH----HHHHHhhc-cccccC--C
Confidence            68999999999999999999995  334433 3111                   122    33333433 222211  1


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHH-HHHcCCeEEEE
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRI-CREANVMLIFA  142 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~-~~~~~ip~i~~  142 (456)
                             +.+.++..|+||.|..+......+.++ ....+.-+|+.
T Consensus        55 -------~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   55 -------NEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             -------HHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             -------hHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence                   122344689999998876655555555 23344555543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.95  E-value=0.096  Score=54.80  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      |++++|+|+|.|++|..+|+.|+..|. .++++|.+.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~   38 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE   38 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            678999999999999999999999997 699998543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.86  E-value=0.15  Score=43.42  Aligned_cols=98  Identities=12%  Similarity=0.146  Sum_probs=56.6

Q ss_pred             cEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           21 SVCLLNC-GPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      ||.|+|+ |-.|.++++.+.. .|+.=.-.+|...   ++.      -..|+|        +.+..-...+.+.   .+.
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~------~g~d~g--------~~~~~~~~~~~v~---~~l   61 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAK------VGKDVG--------ELAGIGPLGVPVT---DDL   61 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STT------TTSBCH--------HHCTSST-SSBEB---S-H
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---ccc------ccchhh--------hhhCcCCcccccc---hhH
Confidence            7999999 9999999999998 7776566666443   000      012232        1111111122211   122


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                             .+.+..+|+||+.+ ..+......++|.++++|+|.+ +.|+
T Consensus        62 -------~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG-TTG~  101 (124)
T PF01113_consen   62 -------EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG-TTGF  101 (124)
T ss_dssp             -------HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred             -------HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE-CCCC
Confidence                   22345689999887 4466677788999999997654 5554

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.85  E-value=0.082  Score=52.67  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=50.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC---EEEEE
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV---KAKFI   94 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v---~v~~~   94 (456)
                      ..+|.|||+|.+|+.+|-.|+..|+. .+.|+|-                   .+.|++..+.-|+...|..   ++...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~-------------------~~~~~~g~a~Dl~~~~~~~~~~~v~~~   63 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV-------------------VEDKLKGEAMDLQHGSAFLKNPKIEAD   63 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CccHHHHHHHHHHHhhccCCCCEEEEC
Confidence            46899999999999999999999996 5999983                   2235555555566554422   33221


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                       .        +.+.++++|+||.|.
T Consensus        64 -~--------dy~~~~~adivvita   79 (312)
T cd05293          64 -K--------DYSVTANSKVVIVTA   79 (312)
T ss_pred             -C--------CHHHhCCCCEEEECC
Confidence             1        223367899999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.81  E-value=0.14  Score=53.43  Aligned_cols=98  Identities=13%  Similarity=0.055  Sum_probs=58.8

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +...+|+|+|+|.+|..+++.|...|.. ++++|.+.=                   +.    +.+.+..+.+.+  +..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~-------------------~~----~~~~~~~~~~~~--i~g  282 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPE-------------------RA----EELAEELPNTLV--LHG  282 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHH-------------------HH----HHHHHHCCCCeE--EEC
Confidence            4468899999999999999999998884 788874431                   11    233333333432  222


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      ++..........+.+++.||++..+......+...|+..+.+-+
T Consensus       283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~i  326 (453)
T PRK09496        283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKV  326 (453)
T ss_pred             CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeE
Confidence            22111000122356889988776554554555666777765433

>PLN00203 glutamyl-tRNA reductase

Probab=94.79  E-value=0.051  Score=57.81  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |...+|+|||+|.+|..++++|...|+.++++++
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n  297 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN  297 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            5579999999999999999999999999999986

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.72  E-value=0.2  Score=52.30  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=55.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      +|+|+|+|.+|..+++.|...|. .++++|.+.-                   ++    +.+++ ...+++  +..+...
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~----~~~~~-~~~~~~--~~gd~~~   54 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RL----RRLQD-RLDVRT--VVGNGSS   54 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HH----HHHHh-hcCEEE--EEeCCCC
Confidence            79999999999999999999997 5788874331                   11    22222 112332  2222111


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CCeEEEEee
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARS  144 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~  144 (456)
                      ........+.++|.||++..+...-..+...++.. +.+-+.+.+
T Consensus        55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEEEE
Confidence            00001122568898888766555555566667775 555444443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.64  E-value=0.099  Score=51.78  Aligned_cols=71  Identities=18%  Similarity=0.147  Sum_probs=50.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCC---CEEEEEecC
Q 012768           22 VCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA---VKAKFIEEY   97 (456)
Q Consensus        22 VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~---v~v~~~~~~   97 (456)
                      |.|||+|.+|+.+|-.|+..|+. .++++|.                   -+.|++..+..|....+.   +++...   
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~-------------------~~~~~~g~~~DL~~~~~~~~~~~i~~~---   58 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV-------------------NEEKAKGDALDLSHASAFLATGTIVRG---   58 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CccHHHHHHHhHHHhccccCCCeEEEC---
Confidence            57999999999999999999984 5999983                   234666677777776553   232211   


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCC
Q 012768           98 PEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                            .+.+.+.++|+||.|..
T Consensus        59 ------~~~~~l~~aDiVIitag   75 (300)
T cd00300          59 ------GDYADAADADIVVITAG   75 (300)
T ss_pred             ------CCHHHhCCCCEEEEcCC
Confidence                  11234678999997653

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PLN02602 lactate dehydrogenase

Probab=94.56  E-value=0.091  Score=53.12  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=49.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC---CCEEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND---AVKAKFIE   95 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp---~v~v~~~~   95 (456)
                      .+|.|||+|.+|+.+|-.|+..|+. .+.|+|-                   .+.|++..+.-|+...|   .+++....
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~~   98 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAST   98 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeCC
Confidence            6999999999999999999999995 6999983                   22355555555555433   23332211


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                               +.+.++++|+||.|.
T Consensus        99 ---------dy~~~~daDiVVitA  113 (350)
T PLN02602         99 ---------DYAVTAGSDLCIVTA  113 (350)
T ss_pred             ---------CHHHhCCCCEEEECC
Confidence                     223367899999774

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.47  E-value=0.33  Score=48.27  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=26.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVI   49 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlv   49 (456)
                      .+|+|+|+|++|+..+-.|.++| ..++++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~   29 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLL   29 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence            37999999999999999999999 767775

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.47  E-value=0.12  Score=51.82  Aligned_cols=35  Identities=20%  Similarity=0.434  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++..+|.|||+|.+|+.+|..++..|+..+.|+|-
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi   38 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI   38 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            45679999999999999999999999877999984

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.41  E-value=0.11  Score=51.50  Aligned_cols=118  Identities=18%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEecC--
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEY--   97 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~~--   97 (456)
                      +|.|||+|..|+.++++|...|. .++++|.+.-....+.        +.|..-+....+..... ++++-+..+...  
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~   72 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI   72 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence            69999999999999999999996 5888886542211110        11211111222233332 355555544332  


Q ss_pred             hhhhhcCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           98 PEALIEMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      ...+.+.-...+..-++||.+ +.+......+.+.+.+.++.++.+.+.|.
T Consensus        73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~  123 (301)
T PRK09599         73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG  123 (301)
T ss_pred             HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence            111111112234444677755 34445566778889999999998877664

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.29  E-value=0.095  Score=52.38  Aligned_cols=35  Identities=14%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .++.+|.|||+|.+|..++-.|+..|+..+.|+|-
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di   37 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDV   37 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEEC
Confidence            35679999999999999999999999888999994

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.20  E-value=0.24  Score=52.39  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++..+|+|+|.|++|.++|..|...|.. ++++|..
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~   48 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG   48 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5677999999999999999999999984 9999854

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=94.07  E-value=0.16  Score=46.70  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=51.9

Q ss_pred             HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768           16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFI   94 (456)
Q Consensus        16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~   94 (456)
                      .+++++|+|+|. |++|..+++.|+..| .++++++.+                   ..|++.+++.+.+.. .+.+...
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~   83 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV   83 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence            467789999995 999999999999998 488888532                   135665666554332 2333333


Q ss_pred             ecC-hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           95 EEY-PEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        95 ~~~-~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      +.. .+.    ..+.+.++|+||.++..
T Consensus        84 ~~~~~~~----~~~~~~~~diVi~at~~  107 (194)
T cd01078          84 ETSDDAA----RAAAIKGADVVFAAGAA  107 (194)
T ss_pred             eCCCHHH----HHHHHhcCCEEEECCCC
Confidence            211 111    12345688999977643

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.06  E-value=0.088  Score=40.96  Aligned_cols=58  Identities=24%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEE
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAK   92 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~   92 (456)
                      ||+|+|.|.+|+|+|..|...|. ++|+++...-         +.  ...+..-++.+.+.+++.  .|++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~--gV~v~   58 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKR--GVEVH   58 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHT--TEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHC--CCEEE
Confidence            68999999999999999999995 7899874332         11  122333445566677766  34443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.96  E-value=0.33  Score=48.14  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|+|+|++|+-++-.|.++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            3579999999999999999999995 69998753

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.85  E-value=0.33  Score=55.63  Aligned_cols=97  Identities=19%  Similarity=0.173  Sum_probs=55.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcC-CC------------cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGG-IG------------SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE   84 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~G-v~------------~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~   84 (456)
                      +.++|+|+|+|.+|..+++.|+..+ +.            .+++.|.+                   ..+++.+++.   
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~---  625 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG---  625 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence            4679999999999999999998753 22            14444422                   2234333332   


Q ss_pred             hCCCCEEEEEe-cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           85 LNDAVKAKFIE-EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        85 lnp~v~v~~~~-~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                       .|.++....+ .+.+.+    ..++++.|+||.+..+ ..-..+.+.|.+.++.+++.
T Consensus       626 -~~~~~~v~lDv~D~e~L----~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~e  678 (1042)
T PLN02819        626 -IENAEAVQLDVSDSESL----LKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTA  678 (1042)
T ss_pred             -cCCCceEEeecCCHHHH----HHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEEC
Confidence             2443322221 122222    2334578888877654 23356667777777776654

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.80  E-value=0.12  Score=51.68  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEe
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVID   50 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD   50 (456)
                      .+|.|+|+ |.+|+.+|-.|+..|+-      .+.|+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D   41 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD   41 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence            58999998 99999999999999985      588887

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK00811 spermidine synthase; Provisional

Probab=93.78  E-value=0.42  Score=46.92  Aligned_cols=76  Identities=13%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh------CCCCEE
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL------NDAVKA   91 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l------np~v~v   91 (456)
                      ...+||++|+|+ |.-....|-..++.+++.+|-|.                   .-++.+++.+.++      +|.++ 
T Consensus        76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~-------------------~vv~~a~~~~~~~~~~~~~d~rv~-  134 (283)
T PRK00811         76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE-------------------RVVEVCRKYLPEIAGGAYDDPRVE-  134 (283)
T ss_pred             CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH-------------------HHHHHHHHHhHHhccccccCCceE-
Confidence            357899999875 33333334456899999998544                   2344555666554      34444 


Q ss_pred             EEEecChhhhhcCCcCCCCCCcEEEEc
Q 012768           92 KFIEEYPEALIEMNPPFFSQFTLVVAT  118 (456)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~dvVi~~  118 (456)
                       .+..+........   -..||+||+.
T Consensus       135 -v~~~Da~~~l~~~---~~~yDvIi~D  157 (283)
T PRK00811        135 -LVIGDGIKFVAET---ENSFDVIIVD  157 (283)
T ss_pred             -EEECchHHHHhhC---CCcccEEEEC
Confidence             4444433332221   1379999963

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.72  E-value=0.23  Score=54.26  Aligned_cols=90  Identities=14%  Similarity=0.203  Sum_probs=58.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      +.+|+|+|+|.+|..+++.|...|+ .++++|.|.-                   +++    .+++.  ..++-.-+...
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~v~~GDat~  453 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GMKVFYGDATR  453 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CCeEEEEeCCC
Confidence            4799999999999999999999998 4899996652                   222    22222  23332222211


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN  136 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~  136 (456)
                      .++.  ...-+.++++||++.++.+....+...++++.
T Consensus       454 ~~~L--~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~  489 (621)
T PRK03562        454 MDLL--ESAGAAKAEVLINAIDDPQTSLQLVELVKEHF  489 (621)
T ss_pred             HHHH--HhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            1111  12235588999988877677777777777764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.64  E-value=0.03  Score=49.88  Aligned_cols=32  Identities=16%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|.|+|+|..|+.+|..|+..| .+++|+..+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence            6899999999999999999999 6788886543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=93.61  E-value=0.12  Score=41.03  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +..++++|+|+|..|.-++..|...|...++++|.|.
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi   57 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI   57 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            7789999999999999999999999989999998743

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.60  E-value=0.28  Score=46.75  Aligned_cols=26  Identities=12%  Similarity=0.249  Sum_probs=23.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI   43 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv   43 (456)
                      +..+|.|||+|.+|..+++.|...|.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~   28 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSK   28 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence            35689999999999999999998874

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=93.25  E-value=0.24  Score=49.63  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=52.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      .++|+|+|+|+.|...++.|. ..|+.++++++.+                   ..|++..++.+.+..+ +++...+ +
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~-~  187 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAAT-D  187 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence            468999999999999999997 5799999998632                   2477777777764332 4443322 1


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      .       .+.+.++|+||.|+.+
T Consensus       188 ~-------~~av~~aDiVvtaT~s  204 (326)
T TIGR02992       188 P-------RAAMSGADIIVTTTPS  204 (326)
T ss_pred             H-------HHHhccCCEEEEecCC
Confidence            1       2235689999977654

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=93.21  E-value=0.19  Score=52.96  Aligned_cols=123  Identities=11%  Similarity=0.111  Sum_probs=71.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcc--hHHHHHHHHHHh-CCCCEEEEEec
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES--KAKSVCAFLQEL-NDAVKAKFIEE   96 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~--Ka~~~~~~l~~l-np~v~v~~~~~   96 (456)
                      ++|.|||+|..|+.+|.||+..|. .++++|.+.-....+...    ...-|..  -+....+.++.+ .|++-+..+..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~   76 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA   76 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence            579999999999999999999998 599998654332211110    0000100  112233444433 35544433221


Q ss_pred             C--hhhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           97 Y--PEALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        97 ~--~~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      .  ...+.+.....+..=|+||++. .......+....+.+.++.|+.+.+.|-
T Consensus        77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG  130 (470)
T PTZ00142         77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG  130 (470)
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence            1  1112111233455668888665 3445555666788889999999988774

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.11  E-value=0.33  Score=52.87  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=58.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-C
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-Y   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~   97 (456)
                      +.+|+|+|.|.+|..+++.|...|+. ++++|.|.-                   +++    .+++.  ...+-.-+. +
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~----~~~~~--g~~v~~GDat~  453 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDIS-------------------AVN----LMRKY--GYKVYYGDATQ  453 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHH----HHHhC--CCeEEEeeCCC
Confidence            46999999999999999999999994 899996651                   222    22322  222222111 1


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN  136 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~  136 (456)
                      ++.+   ...-+.++++||++.++......+-..+++++
T Consensus       454 ~~~L---~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~  489 (601)
T PRK03659        454 LELL---RAAGAEKAEAIVITCNEPEDTMKIVELCQQHF  489 (601)
T ss_pred             HHHH---HhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence            1111   12235689999988877777667777788764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.96  E-value=0.56  Score=46.08  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=27.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|+|+|+|++|+.++..|+.+|. .++++|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r   31 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR   31 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence            69999999999999999999994 6999885

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.95  E-value=0.35  Score=46.73  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=26.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC--CcEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGI--GSITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv--~~itlvD   50 (456)
                      .+|.|||+|.+|..++..|...|.  ..++++|
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~   35 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD   35 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence            479999999999999999999984  3566665

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=92.90  E-value=0.21  Score=52.51  Aligned_cols=121  Identities=12%  Similarity=0.150  Sum_probs=69.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccC--cchHHHHHHHHHHh-CCCCEEEEEecC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESKAKSVCAFLQEL-NDAVKAKFIEEY   97 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~Ka~~~~~~l~~l-np~v~v~~~~~~   97 (456)
                      .|.+||+|..|..+|.||+..|. +++++|.+.-....+...+     ..|  -.-+....+..+.+ .|++-+..+...
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~   74 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG   74 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence            48899999999999999999998 5888886543322222110     001  00111122333333 355544443321


Q ss_pred             --hhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           98 --PEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        98 --~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                        ...+.+.-...+..=++||++.. ......+..+.+.+.++.|+.+.+.|-
T Consensus        75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG  127 (467)
T TIGR00873        75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG  127 (467)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence              11222111234555688887653 444444556678888999999988773

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=92.88  E-value=0.18  Score=53.34  Aligned_cols=123  Identities=11%  Similarity=0.085  Sum_probs=73.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcc---hHHHHHHHHHHh-CCCCEEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES---KAKSVCAFLQEL-NDAVKAKFIE   95 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~---Ka~~~~~~l~~l-np~v~v~~~~   95 (456)
                      ++|.+||+|..|..+|+||+..|. .++++|.+.-....+...    ....|..   -+....+..+.+ .|++-+..+.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~   81 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK   81 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence            579999999999999999999997 588888543221111100    0000211   122233333333 3666555543


Q ss_pred             cCh--hhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           96 EYP--EALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        96 ~~~--~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      ...  +.+.+.-...+..=|+||++. .+......+.+.+.+.++.|+.+.+.|.
T Consensus        82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG  136 (493)
T PLN02350         82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG  136 (493)
T ss_pred             CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence            221  111111123355567888664 4456677788899999999999988764

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=92.87  E-value=0.59  Score=41.99  Aligned_cols=97  Identities=15%  Similarity=0.131  Sum_probs=58.6

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           22 VCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        22 VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      |+|+|+ |.+|..+++.|+..| .+++.+=          |+         ..|.+.        .+.+++...+.  .+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~~~~~~~~d~--~d   50 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SPGVEIIQGDL--FD   50 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CTTEEEEESCT--TC
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------ccccccceeee--hh
Confidence            799996 889999999999999 5666642          21         112221        56666544332  11


Q ss_pred             hhcCCcCCCCCCcEEEEcCCC----hHHHHHHHHHHHHcCCe-EEEEeecccee
Q 012768          101 LIEMNPPFFSQFTLVVATQLG----EEKMIKLDRICREANVM-LIFARSYGLTG  149 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~----~~~~~~l~~~~~~~~ip-~i~~~~~G~~G  149 (456)
                      .. .-...+.++|.||.+..+    ......+-+.|.+.+++ ++..++.|.++
T Consensus        51 ~~-~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~  103 (183)
T PF13460_consen   51 PD-SVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVYR  103 (183)
T ss_dssp             HH-HHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGTT
T ss_pred             hh-hhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccccCC
Confidence            10 012335689999977532    33355667788888874 45555555443

...

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.77  E-value=0.58  Score=46.38  Aligned_cols=32  Identities=19%  Similarity=0.373  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999997 68888843

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=92.77  E-value=0.3  Score=41.90  Aligned_cols=71  Identities=11%  Similarity=0.100  Sum_probs=38.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      =.+.+|.|||+|-+|..+++.|..+|.. +.-+-                      .|....++++..+-+...+..   
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~----------------------srs~~sa~~a~~~~~~~~~~~---   61 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHE-VVGVY----------------------SRSPASAERAAAFIGAGAILD---   61 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSE-EEEES----------------------SCHH-HHHHHHC--TT--------
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCe-EEEEE----------------------eCCcccccccccccccccccc---
Confidence            3467899999999999999999999963 43331                      122334455555555443211   


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                              ..+.+..+|+++.+..+
T Consensus        62 --------~~~~~~~aDlv~iavpD   78 (127)
T PF10727_consen   62 --------LEEILRDADLVFIAVPD   78 (127)
T ss_dssp             --------TTGGGCC-SEEEE-S-C
T ss_pred             --------cccccccCCEEEEEech
Confidence                    12345689999987644

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=92.73  E-value=0.29  Score=48.78  Aligned_cols=77  Identities=14%  Similarity=0.105  Sum_probs=52.3

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFI   94 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~   94 (456)
                      +....+|+|+|+|+.|..+++.+.+ .|+.++++++.+                   ..|++..++.+.+...  .+...
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~  180 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVV  180 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEe
Confidence            3456899999999999999987665 688999998622                   3477777777765422  23322


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      . .+       .+.+.++|+||+++.+
T Consensus       181 ~-~~-------~~av~~aDIVi~aT~s  199 (314)
T PRK06141        181 T-DL-------EAAVRQADIISCATLS  199 (314)
T ss_pred             C-CH-------HHHHhcCCEEEEeeCC
Confidence            1 11       2235689999876654

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=92.68  E-value=0.18  Score=49.88  Aligned_cols=31  Identities=32%  Similarity=0.570  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD   50 (456)
                      .+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiD   32 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLID   32 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEE
Confidence            3799999999999999999999999 999998

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.67  E-value=0.55  Score=46.51  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      ..+|+|||+|.+|..+++.|...|. .+++++|.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr   39 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR   39 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            3689999999999999999999997 47888874

>PLN02206 UDP-glucuronate decarboxylase

Probab=92.64  E-value=0.76  Score=48.12  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=27.2

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +..+|+|.| .|-+|+.+++.|...|.. ++.+|.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~  151 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDN  151 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeC
Confidence            457899999 577999999999999964 666663

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=92.55  E-value=0.22  Score=49.24  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=62.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEecCh-
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEYP-   98 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~~~-   98 (456)
                      +|.|||+|..|+.++.+|+..|. .++++|.+.-....+...        |...+....+....+ .+++-+..+.... 
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~   72 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV   72 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence            69999999999999999999995 577887654222111110        111111111111111 2444443332211 


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           99 EALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      ..+.+.-...+..=++||.+.. .......+...+...++.++.+.+.|
T Consensus        73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG  121 (298)
T TIGR00872        73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG  121 (298)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence            1111111123433467776543 33445556667778888888887765

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.52  E-value=0.5  Score=46.18  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=27.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|.|||+|.+|..+++.|...|. .++++|.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~   31 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR   31 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence            69999999999999999999996 5888874

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.47  E-value=0.53  Score=49.73  Aligned_cols=38  Identities=18%  Similarity=0.151  Sum_probs=32.9

Q ss_pred             HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           13 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        13 ~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ....++.++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus         9 ~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~   46 (473)
T PRK00141          9 ALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD   46 (473)
T ss_pred             hcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            3345667899999999999999999999998 7888884

>PRK08618 ornithine cyclodeaminase; Validated

Probab=92.42  E-value=0.37  Score=48.30  Aligned_cols=77  Identities=13%  Similarity=0.235  Sum_probs=52.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ...+|+|+|+|+.|...+..+. ..|+++++++|.+                   ..|++..++.+++..+ +++.... 
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~~-  184 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVVN-  184 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEeC-
Confidence            4578999999999998888775 5799999999633                   2467777777765332 3333322 


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCCh
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLGE  122 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~~  122 (456)
                      +.       .+.+.++|+||.|+.+.
T Consensus       185 ~~-------~~~~~~aDiVi~aT~s~  203 (325)
T PRK08618        185 SA-------DEAIEEADIIVTVTNAK  203 (325)
T ss_pred             CH-------HHHHhcCCEEEEccCCC
Confidence            11       22346789999877554

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.34  E-value=1.7  Score=40.77  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|.||| +|.+|+.+++.|+..| .+++++|
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~   31 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGS   31 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence            699997 8999999999999999 5677775

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=92.33  E-value=0.34  Score=47.92  Aligned_cols=118  Identities=15%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEecC--
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEY--   97 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~~--   97 (456)
                      +|.+||+|.+|..++++|...|. .++++|.+.-....+        .+.|...+....+..++. ++++-+..+...  
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~   72 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVA--------GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV   72 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH--------HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence            69999999999999999999996 588888653211111        011221111122222222 234444443322  


Q ss_pred             hhhhhcCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           98 PEALIEMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      ...+.+.-...+..=.+||.+ +.+......+.+.+...++.++.+...|.
T Consensus        73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~  123 (299)
T PRK12490         73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG  123 (299)
T ss_pred             HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence            111111111223333567755 34445566677777788888888766654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.29  E-value=0.59  Score=49.15  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .-+..++|+|+|.|..|..+|+.|...|. .+++.|..
T Consensus        10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   46 (458)
T PRK01710         10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKK   46 (458)
T ss_pred             hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCC
Confidence            34667899999999999999999999997 68898854

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=92.27  E-value=0.41  Score=47.61  Aligned_cols=31  Identities=32%  Similarity=0.515  Sum_probs=28.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      +|.|||+|.+|+.+|-.|+..|+ ..+.++|.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~   33 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI   33 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            69999999999999999999996 67999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.15  E-value=0.45  Score=46.28  Aligned_cols=32  Identities=9%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..++|+|+|+||+|..++..|...|. +++++|
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~  147 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIAN  147 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            36789999999999999999999996 888886

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=92.01  E-value=0.52  Score=46.75  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      ....+|+|+|+|+.|...++.+.. .|+.++.++|.+                   ..|++..++.+++.+.  .+. . 
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-~-  179 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-P-  179 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE-E-
Confidence            356889999999999999999964 688999998733                   3477778777765432  222 1 


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      ...       .+.+.++|+||.|+.+
T Consensus       180 ~~~-------~~av~~aDiVitaT~s  198 (304)
T PRK07340        180 LDG-------EAIPEAVDLVVTATTS  198 (304)
T ss_pred             CCH-------HHHhhcCCEEEEccCC
Confidence            111       2235689999987765

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.96  E-value=0.65  Score=45.30  Aligned_cols=32  Identities=19%  Similarity=0.445  Sum_probs=26.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI---GSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD   50 (456)
                      +.+|.+||+|-+|..++++|...|.   .+++++|
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~   36 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD   36 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence            4579999999999999999999985   3466655

>PRK07680 late competence protein ComER; Validated

Probab=91.95  E-value=0.64  Score=45.23  Aligned_cols=30  Identities=13%  Similarity=0.417  Sum_probs=25.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC---CcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI---GSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv---~~itlvD   50 (456)
                      +|.|||+|.+|+.++..|...|.   ..++++|
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~   34 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITN   34 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence            58999999999999999999985   4567765

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.94  E-value=0.53  Score=45.99  Aligned_cols=25  Identities=12%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI   43 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv   43 (456)
                      ..+|.+||+|..|..++++|...|+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~   27 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANV   27 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC
Confidence            4589999999999999999999983

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=91.89  E-value=1.7  Score=36.70  Aligned_cols=90  Identities=18%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCc-EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC----CCEEEEE
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGS-ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKFI   94 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~-itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp----~v~v~~~   94 (456)
                      ||.|+| .|-+|.++++.|...---. +.++....               ..|++        +.+..|    .-.+...
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~--------~~~~~~~~~~~~~~~~~   57 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKP--------LSEVFPHPKGFEDLSVE   57 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSB--------HHHTTGGGTTTEEEBEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCe--------eehhccccccccceeEe
Confidence            699999 7889999999998732222 22222111               13432        222332    2222222


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                      +.        +.+.+.+.|+|+.|..+... ..+...+.+.++++|+.
T Consensus        58 ~~--------~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g~~ViD~   96 (121)
T PF01118_consen   58 DA--------DPEELSDVDVVFLALPHGAS-KELAPKLLKAGIKVIDL   96 (121)
T ss_dssp             ET--------SGHHHTTESEEEE-SCHHHH-HHHHHHHHHTTSEEEES
T ss_pred             ec--------chhHhhcCCEEEecCchhHH-HHHHHHHhhCCcEEEeC
Confidence            21        22335789999999876444 44555557888876654

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=91.86  E-value=0.41  Score=44.95  Aligned_cols=60  Identities=27%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +..++++++| +||+|-+++|.|...|++.+.+.|...    |                 -.+...|++.||.+++..+.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n-----------------~~a~akL~ai~p~~~v~F~~   61 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N-----------------PEAIAKLQAINPSVSVIFIK   61 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C-----------------HHHHHHHhccCCCceEEEEE
Confidence            4578899986 999999999999999999888876211    1                 12346899999999988765


Q ss_pred             cC
Q 012768           96 EY   97 (456)
Q Consensus        96 ~~   97 (456)
                      -+
T Consensus        62 ~D   63 (261)
T KOG4169|consen   62 CD   63 (261)
T ss_pred             ec
Confidence            43

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=91.82  E-value=0.22  Score=48.83  Aligned_cols=103  Identities=18%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      ||||+| .|-+|+.+++.|...|..-+. ++..                ++.-...+.+.+.+.+..|++-++.......
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~-~~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~   64 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIA-TSRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNV   64 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEE-ESTT----------------CS-TTSHHHHHHHHHHH--SEEEE------H
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEE-eCch----------------hcCCCCHHHHHHHHHHhCCCeEeccceeecH
Confidence            799999 577999999999987754333 3333                1222345677788888889887765322111


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccce
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLT  148 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~  148 (456)
                      +..+.+++.        +...+......|.+.|...++++|+.++..+|
T Consensus        65 ~~ce~~p~~--------a~~iN~~~~~~la~~~~~~~~~li~~STd~VF  105 (286)
T PF04321_consen   65 DACEKNPEE--------AYAINVDATKNLAEACKERGARLIHISTDYVF  105 (286)
T ss_dssp             HHHHHSHHH--------HHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS
T ss_pred             HhhhhChhh--------hHHHhhHHHHHHHHHHHHcCCcEEEeeccEEE
Confidence            111111110        00012234467888999999999999887655

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK06197 short chain dehydrogenase; Provisional

Probab=91.81  E-value=0.4  Score=47.24  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=34.4

Q ss_pred             cCHHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768            9 WGEQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |+......+++++|+|.| .||+|.++++.|+..|. ++++++.
T Consensus         6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r   48 (306)
T PRK06197          6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR   48 (306)
T ss_pred             CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            666556678888999998 58999999999999997 5667653

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=91.80  E-value=0.24  Score=49.63  Aligned_cols=32  Identities=16%  Similarity=0.245  Sum_probs=28.7

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEeC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD~   51 (456)
                      .+|.|+|+ |.+|+.+|-.|+..|+-      .+.|+|-
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            58999999 99999999999999985      4999983

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=91.72  E-value=0.55  Score=45.39  Aligned_cols=91  Identities=11%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      -+|.|+|+ |.+|..+++.+.. .++.-..++|.+.-..   ..                   . .  ...+.  .. .+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~---~~-------------------~-~--~~~i~--~~-~d   53 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL---VG-------------------Q-G--ALGVA--IT-DD   53 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc---cc-------------------c-C--CCCcc--cc-CC
Confidence            37999999 9999999998875 4555555566442110   00                   0 0  00111  11 11


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      .       .+.+.++|+||.++.+ .....+...|.++++|++.+ +.|+
T Consensus        54 l-------~~ll~~~DvVid~t~p-~~~~~~~~~al~~G~~vvig-ttG~   94 (257)
T PRK00048         54 L-------EAVLADADVLIDFTTP-EATLENLEFALEHGKPLVIG-TTGF   94 (257)
T ss_pred             H-------HHhccCCCEEEECCCH-HHHHHHHHHHHHcCCCEEEE-CCCC
Confidence            1       1223468899877744 44467788899999998854 5554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.69  E-value=0.5  Score=46.88  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|.|+|+|.+|+.++++|...|. .++++|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3579999999999999999999996 68888854

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.67  E-value=0.63  Score=50.22  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +.||+|+|+|.+|..+++.|...|. .++++|.|.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~  450 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR  450 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence            4799999999999999999999997 489998654

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=91.62  E-value=0.51  Score=49.01  Aligned_cols=109  Identities=15%  Similarity=0.164  Sum_probs=70.6

Q ss_pred             cEEEEcCChhHH-HHHHHHHH----cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           21 SVCLLNCGPTGS-ETLKNLVL----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        21 ~VlIiG~gglG~-eiaknLvl----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +|.|||+|++-+ ++.+.|+.    .+++.|+|+|-|.  +..|..            =...+.+...+.++.++++...
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~   67 (419)
T cd05296           2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT   67 (419)
T ss_pred             EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence            799999999855 77888776    5789999999553  222211            1223445666777777777644


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVRI  153 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~  153 (456)
                      ..        .+-+.+.|+||.+.  ...+.+..-.++..++|+  +-..+.|..|..+.
T Consensus        68 d~--------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi--~gqET~G~GG~~~a  117 (419)
T cd05296          68 DR--------REALEGADFVFTQIRVGGLEARALDERIPLKHGV--IGQETTGAGGFAKA  117 (419)
T ss_pred             CH--------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCC--ccccCCCcchHHHh
Confidence            21        23466889999764  233445455567777776  34788888885544

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=91.48  E-value=1.1  Score=44.95  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=25.3

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|+|.|+ |-+|+.+++.|...|=-+++.+|.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r   34 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM   34 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence            36999996 779999999999864236777763

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=91.40  E-value=0.14  Score=46.61  Aligned_cols=41  Identities=20%  Similarity=0.232  Sum_probs=34.0

Q ss_pred             HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           13 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        13 ~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ....|.+++|.|+|+|.+|.++|+-|...|. ++..+|...-
T Consensus        30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~   70 (178)
T PF02826_consen   30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK   70 (178)
T ss_dssp             TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred             CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence            3457899999999999999999999999999 7888885543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=91.32  E-value=0.18  Score=39.84  Aligned_cols=24  Identities=33%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhc
Q 012768          431 AAELHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       431 ~~~l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      .|-|.|+++++|.+.|+|+||+|+
T Consensus        23 ~GVlg~~~giigslqA~eaik~l~   46 (84)
T PF05237_consen   23 AGVLGPVVGIIGSLQANEAIKLLL   46 (84)
T ss_dssp             S-B-HHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccchHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999986

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>cd00704 MDH Malate dehydrogenase

Probab=91.25  E-value=0.19  Score=50.33  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGS------ITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~------itlvD~d   52 (456)
                      .+|+|+|+ |.+|+.++..|+..|+-.      +.|+|-.
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~   40 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP   40 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence            37999998 999999999999999876      9999853

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=91.24  E-value=0.68  Score=45.58  Aligned_cols=107  Identities=13%  Similarity=0.129  Sum_probs=60.4

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|||.|+ |-+|+.+++.|...|  +++.+|....        +  ...|+-  ..+.+.+.+.+..|++-++.......
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~--------~--~~~Dl~--d~~~~~~~~~~~~~D~Vih~Aa~~~~   67 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST--------D--YCGDFS--NPEGVAETVRKIRPDVIVNAAAHTAV   67 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc--------c--ccCCCC--CHHHHHHHHHhcCCCEEEECCccCCc
Confidence            6999995 779999999999888  5887775321        0  112332  23445556666667665543211000


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      ...+.+++      .  ....+......+.+.|+..++++|+.++...||
T Consensus        68 ~~~~~~~~------~--~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~  109 (299)
T PRK09987         68 DKAESEPE------F--AQLLNATSVEAIAKAANEVGAWVVHYSTDYVFP  109 (299)
T ss_pred             chhhcCHH------H--HHHHHHHHHHHHHHHHHHcCCeEEEEccceEEC
Confidence            00000000      0  000122234567789999999999888766654

>PLN00016 RNA-binding protein; Provisional

Probab=91.17  E-value=1.3  Score=45.08  Aligned_cols=116  Identities=20%  Similarity=0.219  Sum_probs=66.8

Q ss_pred             HHHhcCcEEEE----cC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCC
Q 012768           15 AALEKASVCLL----NC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDA   88 (456)
Q Consensus        15 ~~L~~~~VlIi----G~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~   88 (456)
                      ......+|+|+    |+ |-+|+.+++.|+..|. .+++++.+.-....+..          .+     -..+.++ .+.
T Consensus        48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~----------~~-----~~~~~~l~~~~  111 (378)
T PLN00016         48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK----------EP-----FSRFSELSSAG  111 (378)
T ss_pred             cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc----------Cc-----hhhhhHhhhcC
Confidence            34556789999    85 7799999999999995 68887754321110000          00     0111122 122


Q ss_pred             CEEEEEecChhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCC-eEEEEeeccceee
Q 012768           89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANV-MLIFARSYGLTGF  150 (456)
Q Consensus        89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~i-p~i~~~~~G~~G~  150 (456)
                      +++  +..+..++.. .. ...++|+||.+.. .......+-+.|++.++ .+|.+++.|.+|.
T Consensus       112 v~~--v~~D~~d~~~-~~-~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~  171 (378)
T PLN00016        112 VKT--VWGDPADVKS-KV-AGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYKK  171 (378)
T ss_pred             ceE--EEecHHHHHh-hh-ccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcCC
Confidence            332  2223322111 00 1237899996643 34445667788988887 6888888887764

>PRK10537 voltage-gated potassium channel; Provisional

Probab=91.13  E-value=0.71  Score=47.52  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...++.||+|+|.|.+|.++++.|...|. .++++|.|
T Consensus       236 ~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d  272 (393)
T PRK10537        236 HMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPL  272 (393)
T ss_pred             hcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECc
Confidence            33456889999999999999999998886 68888865

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=91.10  E-value=0.48  Score=47.12  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=28.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      +|.|||+ |.+|+.+|-.|+..|+ ..+.|+|-.
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            7999999 9999999999999998 579999954

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=91.08  E-value=0.43  Score=47.66  Aligned_cols=35  Identities=20%  Similarity=0.137  Sum_probs=30.2

Q ss_pred             HhcCcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768           17 LEKASVCLLNC-GPTGSETLKNLVLGGIG-SITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~-~itlvD~   51 (456)
                      ++-.+|.|+|+ |.+|+.++-.|+..|.. .+.|+|-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            45569999998 99999999999987775 6999985

>PRK05442 malate dehydrogenase; Provisional

Probab=91.06  E-value=0.3  Score=48.95  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEe
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVID   50 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD   50 (456)
                      .+|.|+|+ |.+|+.+|-.|+..|+-      .+.|+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiD   42 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLE   42 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEe
Confidence            58999998 99999999999998885      599998

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=91.02  E-value=0.34  Score=46.54  Aligned_cols=40  Identities=20%  Similarity=0.394  Sum_probs=33.9

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHc----CC------CcEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLG----GI------GSITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~----Gv------~~itlvD~d~v   54 (456)
                      ++|++.+|+++|+|+.|.-|++.|+.+    |+      ++|.++|..-+
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gl   70 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGL   70 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEE
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccce
Confidence            359999999999999999999999999    99      89999997643

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=90.94  E-value=0.29  Score=49.08  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=33.2

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|.+++|+|||+|-+|..++++|...|++++++...
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR  206 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR  206 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence            478899999999999999999999999999999853

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=90.85  E-value=0.82  Score=45.70  Aligned_cols=33  Identities=30%  Similarity=0.261  Sum_probs=28.3

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEE
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITV   48 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itl   48 (456)
                      ..++.++|.|+|+|.+|..+|+.|.-.| ..|.-
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y  190 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY  190 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee
Confidence            4688999999999999999999999977 44443

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.83  E-value=0.85  Score=48.49  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +++.+|+|+|.|+.|..+|+.|...|. +++..|..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   39 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR   39 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence            456789999999999999999999997 58888843

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=90.81  E-value=1.4  Score=43.35  Aligned_cols=30  Identities=17%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|+|+|+|++|+.++..|+..|. .+++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            69999999999999999999985 5888874

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=90.80  E-value=1.4  Score=42.50  Aligned_cols=23  Identities=9%  Similarity=0.226  Sum_probs=21.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI   43 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv   43 (456)
                      +|.|||+|.+|..+++.|...|.
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~   24 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPA   24 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC
Confidence            69999999999999999999885

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=90.78  E-value=0.34  Score=47.24  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|+|+|+||.+..++-.|...|+++++|++.
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR  154 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR  154 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            58999999999999999999999999999973

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.71  E-value=0.34  Score=43.66  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             HHhcCcEEEEcCChh-HHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPT-GSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~ggl-G~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|.+++|+|+|.|.. |..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            478899999999985 8889999999999 6998873

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.70  E-value=1.2  Score=46.57  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=29.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ++|+|+|.|+.|..+|+.|...|. .+++.|...
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~   33 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND   33 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            479999999999999999999997 688888543

>PRK08291 ectoine utilization protein EutC; Validated

Probab=90.67  E-value=0.73  Score=46.24  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ..+|+|+|+|+.|...+..|.. .|+..+++++.+                   ..|++..++.+++.. .+++.... +
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d  190 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D  190 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence            4689999999999999999985 688999998632                   236777777665432 24433322 1


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      .       .+.+.++|+||.++.+
T Consensus       191 ~-------~~al~~aDiVi~aT~s  207 (330)
T PRK08291        191 V-------HEAVAGADIIVTTTPS  207 (330)
T ss_pred             H-------HHHHccCCEEEEeeCC
Confidence            1       2235578999977644

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=90.65  E-value=0.87  Score=46.63  Aligned_cols=75  Identities=11%  Similarity=0.076  Sum_probs=49.9

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCC-E
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGS------ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAV-K   90 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~------itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v-~   90 (456)
                      .+|.|+|+ |.+|+.+|-.|+..|+-.      ++|+|-|                 +.+.|++..+.-|.... |.. .
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~~  107 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLRE  107 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcCc
Confidence            48999999 999999999999999965      5666532                 33456666665555544 432 2


Q ss_pred             EEEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           91 AKFIEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      +.+..        .+.+.+++.|+||.+.
T Consensus       108 v~i~~--------~~y~~~kdaDIVVitA  128 (387)
T TIGR01757       108 VSIGI--------DPYEVFEDADWALLIG  128 (387)
T ss_pred             eEEec--------CCHHHhCCCCEEEECC
Confidence            22111        1234477999999764

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.51  E-value=0.36  Score=44.86  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|+.++|+|+|+|.+|..++++|...|. ++++.|.+
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4778999999999999999999999997 67787743

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=90.47  E-value=0.41  Score=47.37  Aligned_cols=67  Identities=28%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             EEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC----CCEEEEEecCh
Q 012768           24 LLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKFIEEYP   98 (456)
Q Consensus        24 IiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp----~v~v~~~~~~~   98 (456)
                      |||+|.+|+.+|-.|+..|+. .+.|+|-                   .+.|++..+.-|+...+    .+++..  .  
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~--   57 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--G--   57 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence            689999999999999999985 5999983                   22345555555555432    333331  1  


Q ss_pred             hhhhcCCcCCCCCCcEEEEcC
Q 012768           99 EALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~  119 (456)
                            +.+.++++|+||.+.
T Consensus        58 ------~~~~~~daDivVita   72 (299)
T TIGR01771        58 ------DYSDCKDADLVVITA   72 (299)
T ss_pred             ------CHHHHCCCCEEEECC
Confidence                  223477899999764

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=90.45  E-value=1.2  Score=44.78  Aligned_cols=32  Identities=28%  Similarity=0.508  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|+|+|.+|+.+|..|..+|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            479999999999999999999995 68888853

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=90.35  E-value=0.71  Score=47.96  Aligned_cols=88  Identities=27%  Similarity=0.499  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHH-cCCCCCCCC-------------------CCchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 012768          367 GFYILLRAVDRFAAN-YNNYPGEFD-------------------GPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEM  426 (456)
Q Consensus       367 ~~~~~~~al~~F~~~-~gr~P~~~~-------------------~~~~~D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~  426 (456)
                      ..+++.+|+.+|.++ +|..|-+..                   .....|..++..++.+++++.|.+.+.|+++.|+.|
T Consensus       288 ~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~F  367 (425)
T cd01493         288 SFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLF  367 (425)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence            467789999999988 998885431                   113468899999999999998987789999999999


Q ss_pred             HHhC--------CCcchhHHHHHHHHHHHHHHHHhc
Q 012768          427 CRFG--------AAELHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       427 ~r~~--------~~~l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      |+.+        ..--||+|||+||+|||||||+||
T Consensus       368 Ckna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~t  403 (425)
T cd01493         368 CKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLIT  403 (425)
T ss_pred             HhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHHh
Confidence            9875        222399999999999999999997

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=90.33  E-value=0.36  Score=42.16  Aligned_cols=28  Identities=21%  Similarity=0.426  Sum_probs=25.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           22 VCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        22 VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |+|+|+|++|+.+|-.|..+|.. +++++
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~   28 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVS   28 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEE
Confidence            78999999999999999997776 88876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=90.29  E-value=2.3  Score=42.59  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ...+|+|.|+|++|..++.-+...|.+++.++|.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~  202 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV  202 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence            4678999999999999999888999988888763

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=90.24  E-value=2.1  Score=44.78  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=26.7

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|.| .|-+|+.+++.|...|. +++.+|.
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr  152 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDN  152 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            45799999 57799999999999986 5777774

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=90.06  E-value=0.99  Score=44.62  Aligned_cols=31  Identities=19%  Similarity=0.453  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           22 VCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        22 VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |.|||+|.+|+-+|-.|+..|...++++|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            6799999999999999999987799999965

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=90.03  E-value=1  Score=43.67  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=24.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcC--CCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGG--IGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~G--v~~itlvD~   51 (456)
                      +|.|||+|.+|..+++.|...+  +.-+.++|.
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~   35 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDR   35 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECC
Confidence            7999999999999999998764  333445553

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=90.02  E-value=0.93  Score=47.24  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=32.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE   55 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~   55 (456)
                      +.+.+|+|+|+|..|..+++.|...| ..+++.|.....
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence            44899999999999999999999999 569999865543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=90.00  E-value=2.4  Score=42.00  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=27.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|.|+|+|.+|+.++.+|...|.. ++++|.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence            699999999999999999999974 8888754

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=89.97  E-value=1  Score=43.61  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI---GSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD~   51 (456)
                      .+.+|.|||+|.+|+.+++.|...|.   .++.+.|.
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~   38 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP   38 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence            34689999999999999999999884   23666553

>PLN02427 UDP-apiose/xylose synthase

Probab=89.95  E-value=1.4  Score=44.92  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++++..+|+|.| +|-+|+.+++.|+..|--+++.+|.
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r   47 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV   47 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence            356777899999 5779999999999985346777774

>PRK09330 cell division protein FtsZ; Validated

Probab=89.82  E-value=2.3  Score=43.55  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=30.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCc--EEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGS--ITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~--itlvD~d~   53 (456)
                      ....+|.|||+||-|+.++.+|+..|+..  +..++.|.
T Consensus        11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~   49 (384)
T PRK09330         11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA   49 (384)
T ss_pred             ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence            44678999999999999999999999874  45556554

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=89.76  E-value=0.27  Score=47.12  Aligned_cols=40  Identities=13%  Similarity=0.138  Sum_probs=36.2

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCC----------cEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIG----------SITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~----------~itlvD~d~v   54 (456)
                      ++|++.+|+++|+|+.|.-+++.|+.+|++          +|.++|..-+
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl   70 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL   70 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence            468899999999999999999999999997          9999997643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.74  E-value=1.2  Score=46.54  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=28.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ...|+|+|.|+.|..+|+-|...|. +++..|.
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~   37 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDS   37 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeC
Confidence            4679999999999999999999997 5888884

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.72  E-value=1.4  Score=45.96  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +.+.+|+|+|.|+.|..+|+.|...|. .+++.|..
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~   37 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE   37 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            456799999999999999999999997 58888843

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=89.70  E-value=2  Score=41.94  Aligned_cols=31  Identities=10%  Similarity=0.210  Sum_probs=26.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC---CcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI---GSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv---~~itlvD~   51 (456)
                      +|.|||+|.+|..+++.|...|.   .++.++|.
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r   36 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSS   36 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence            69999999999999999999983   46777653

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=89.58  E-value=0.42  Score=49.72  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +.+.+|+|+|+|++|..+++.|...|+.+++++|.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r  214 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR  214 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence            67789999999999999999999999999999874

>TIGR00065 ftsZ cell division protein FtsZ

Probab=89.45  E-value=2.3  Score=43.03  Aligned_cols=41  Identities=17%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEE--EEeCCc
Q 012768           13 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSIT--VIDGSK   53 (456)
Q Consensus        13 ~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~it--lvD~d~   53 (456)
                      .++--.+.+|.|||+||-|+.++.+|.+.|+..+.  .+|.|.
T Consensus        11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~   53 (349)
T TIGR00065        11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDA   53 (349)
T ss_pred             hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCH
Confidence            33444567999999999999999999999987554  477765

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=89.37  E-value=0.99  Score=43.68  Aligned_cols=30  Identities=17%  Similarity=0.292  Sum_probs=26.4

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcC--C-CcEEEEeC
Q 012768           22 VCLLNC-GPTGSETLKNLVLGG--I-GSITVIDG   51 (456)
Q Consensus        22 VlIiG~-gglG~eiaknLvl~G--v-~~itlvD~   51 (456)
                      |.|||+ |.+|..++..|+..|  . .+++|+|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~   34 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDI   34 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeC
Confidence            689999 889999999999998  4 67999984

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=89.33  E-value=0.46  Score=46.75  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4678999999999999999999999997 7888874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.32  E-value=1.5  Score=46.33  Aligned_cols=36  Identities=19%  Similarity=0.111  Sum_probs=31.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +++++|+|+|+|-.|..+++-|...|.. +++.|.+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~   41 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCN   41 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCC
Confidence            5678999999999999999999999997 77777543

>PRK14982 acyl-ACP reductase; Provisional

Probab=89.32  E-value=0.44  Score=47.92  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeC
Q 012768           16 ALEKASVCLLNC-GPTGSETLKNLVL-GGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~-gglG~eiaknLvl-~Gv~~itlvD~   51 (456)
                      .|++++|+|+|+ |.+|+++++.|.. .|+.++++++.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R  189 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR  189 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence            477899999998 7899999999985 58999999863

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=89.29  E-value=0.65  Score=46.17  Aligned_cols=32  Identities=16%  Similarity=0.302  Sum_probs=27.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|+|+|+-|+.+|+-|+..| ..++++..+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~   33 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRD   33 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecC
Confidence            58999999999999999999999 667777544

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=89.29  E-value=0.48  Score=47.14  Aligned_cols=37  Identities=22%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           13 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        13 ~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ....|++++|.|||+|.+|..+|+||..+|+ ++++.|
T Consensus        10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~   46 (335)
T PRK13403         10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV   46 (335)
T ss_pred             ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence            3468999999999999999999999999999 466665

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.25  E-value=0.49  Score=44.55  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=34.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .|+..+|+|.|.|.+|..+|+.|...|.+-+.+.|.+-
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            57889999999999999999999999999999998543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=89.19  E-value=2  Score=44.87  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             cEEEEcCChh-HHHHHHHHHH----cCCCcEEEEeCCcccccCCCccccccccccCcchHH-HHHHHHHHhCCCCEEEEE
Q 012768           21 SVCLLNCGPT-GSETLKNLVL----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK-SVCAFLQELNDAVKAKFI   94 (456)
Q Consensus        21 ~VlIiG~ggl-G~eiaknLvl----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~-~~~~~l~~lnp~v~v~~~   94 (456)
                      ||.|||+|+. +-++++.|+.    .+++.|+|+|-|.   ..+.             .+. .+.+..++.++.++++..
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~-------------~v~~l~~~~~~~~g~~~~v~~T   65 (437)
T cd05298           2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQE-------------KVAEAVKILFKENYPEIKFVYT   65 (437)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHH-------------HHHHHHHHHHHhhCCCeEEEEE
Confidence            7999999996 3367777763    4678999999443   2111             122 233445556767777764


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVRI  153 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~  153 (456)
                      ...        .+-++++|.||.+.  ...+.+..=-+++.++|+  +...+.|..|..+.
T Consensus        66 tdr--------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~~a  116 (437)
T cd05298          66 TDP--------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFAYG  116 (437)
T ss_pred             CCH--------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHHHH
Confidence            321        33477899999764  334556555678999996  66688888885544

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PLN00106 malate dehydrogenase

Probab=89.18  E-value=0.7  Score=46.26  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 012768           18 EKASVCLLNC-GPTGSETLKNLVLGGIG-SITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~-~itlvD~d~   53 (456)
                      ...+|+|+|+ |.+|+.++-.|+..|+. .+.|+|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            3568999998 99999999999988884 699999544

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.17  E-value=1.3  Score=44.63  Aligned_cols=29  Identities=17%  Similarity=0.116  Sum_probs=25.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .+|+|+|+|..|+.++..|+..|  .++++.
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~   36 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG--PTLQWV   36 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CEEEEe
Confidence            57999999999999999999998  466664

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.02  E-value=1  Score=45.94  Aligned_cols=34  Identities=15%  Similarity=0.075  Sum_probs=28.1

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCC------CcEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGI------GSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv------~~itlvD   50 (456)
                      -+..+|+|+|+|+-|+.+|..|+..|.      ..++++.
T Consensus         9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~   48 (365)
T PTZ00345          9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWV   48 (365)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEE
Confidence            345689999999999999999999884      4567764

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=89.01  E-value=1.9  Score=45.81  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            379999999999999999999998 68999864

>PRK13018 cell division protein FtsZ; Provisional

Probab=88.92  E-value=3.6  Score=42.07  Aligned_cols=37  Identities=22%  Similarity=0.461  Sum_probs=31.4

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d~   53 (456)
                      ..+.+|.|||+||-|+.++.+|...|+.  .+..++.|.
T Consensus        26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~   64 (378)
T PRK13018         26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA   64 (378)
T ss_pred             cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence            4568999999999999999999999987  456677766

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.91  E-value=1.9  Score=43.74  Aligned_cols=31  Identities=16%  Similarity=0.231  Sum_probs=27.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|+|||+|.+|..+++.|...|. .++++|.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~   31 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY   31 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence            369999999999999999999997 5677764

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=88.87  E-value=3  Score=41.38  Aligned_cols=34  Identities=9%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCc--EEEEeCCcc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGS--ITVIDGSKV   54 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~--itlvD~d~v   54 (456)
                      +|.|||+||-|+.++..|.+.|+..  +..+|.|.-
T Consensus         2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~   37 (304)
T cd02201           2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQ   37 (304)
T ss_pred             eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHH
Confidence            6899999999999999999999864  455676653

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=88.86  E-value=0.44  Score=46.76  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=28.5

Q ss_pred             EEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccc
Q 012768           22 VCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEV   56 (456)
Q Consensus        22 VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~   56 (456)
                      |||-| +|++|+|+++.|+..|++++.++|.+--..
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l   36 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKL   36 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHH
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHH
Confidence            68887 677999999999999999999999665433

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=88.81  E-value=0.54  Score=45.79  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=35.8

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHc----CC------CcEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLG----GI------GSITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~----Gv------~~itlvD~d~v   54 (456)
                      .+|++.+|+++|+|+.|.-|++.|+.+    |+      ++|.++|.+-+
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl   70 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL   70 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence            468899999999999999999999988    99      79999997643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=88.81  E-value=1.9  Score=42.55  Aligned_cols=114  Identities=14%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh--
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP--   98 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~--   98 (456)
                      +|.+||+|-.|..++.+|+..|. .++++|.+.- ..    . +.   ..|...+....+..+  ..++-+..+....  
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~----~-~~---~~g~~~~~s~~~~~~--~advVi~~v~~~~~v   69 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-AD----E-LL---SLGAVSVETARQVTE--ASDIIFIMVPDTPQV   69 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HH----H-HH---HcCCeecCCHHHHHh--cCCEEEEeCCChHHH
Confidence            59999999999999999999996 6788875431 11    1 11   123222222222221  3344444443221  


Q ss_pred             hhhhcCC---cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           99 EALIEMN---PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        99 ~~~~~~~---~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      ..+....   ......=.+||. ++.+......+.+.+..+++.|+.+-..|
T Consensus        70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG  121 (292)
T PRK15059         70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG  121 (292)
T ss_pred             HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence            1111110   111223346664 44556667788888999999888876554

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=88.80  E-value=1.6  Score=41.36  Aligned_cols=38  Identities=26%  Similarity=0.332  Sum_probs=33.3

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..|+..+|+|.|.|.+|..+++.|...|.+=+.+.|..
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            34789999999999999999999999998877688753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=88.75  E-value=1.7  Score=43.95  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=26.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-------CcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-------GSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-------~~itlvD~   51 (456)
                      +|.|+|+|+.|+.+|..|+..|.       .+++++..
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~   38 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF   38 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence            68999999999999999999883       56777753

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=88.68  E-value=1  Score=44.05  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh-
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP-   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~-   98 (456)
                      .+|.+||+|..|.-+|+||+.+|. .++++|.+.-....+-+       ..|-.-+...++...  .-++-+..+...+ 
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~-------~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~   70 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLA-------AAGATVAASPAEAAA--EADVVITMLPDDAA   70 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHH-------HcCCcccCCHHHHHH--hCCEEEEecCCHHH
Confidence            479999999999999999999994 57887754322111110       112212222222222  1234444433221 


Q ss_pred             -hhhhcC-C--cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           99 -EALIEM-N--PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        99 -~~~~~~-~--~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                       ..+.-. +  .+..++=.++|+ ++.+......+.+.....+..++++-+.|-
T Consensus        71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg  124 (286)
T COG2084          71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGG  124 (286)
T ss_pred             HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCC
Confidence             111111 1  122334456664 456667788899999999999998877664

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=88.60  E-value=3  Score=43.45  Aligned_cols=108  Identities=16%  Similarity=0.119  Sum_probs=70.2

Q ss_pred             cEEEEcCChh-HHHHHHHHH----HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           21 SVCLLNCGPT-GSETLKNLV----LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        21 ~VlIiG~ggl-G~eiaknLv----l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +|.|||.|++ +-++++.|+    ...++.|+|+|-|.   ..+..            =...+.+..++.++.++++...
T Consensus         2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~tt   66 (425)
T cd05197           2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKTM   66 (425)
T ss_pred             EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence            7999999996 447778877    35579999999443   11110            1123445556677788777644


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVRI  153 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~  153 (456)
                      ..        .+-++++|.||.+.  ...+.+..=-++..++|+  +-..+.|..|..+-
T Consensus        67 D~--------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~--~gqeT~G~GG~~~a  116 (425)
T cd05197          67 DL--------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGV--IGQETVGPGGTFSG  116 (425)
T ss_pred             CH--------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCc--ccccccCcchhhhh
Confidence            21        23477899999764  344455555568888886  44788888886554

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=88.57  E-value=0.46  Score=48.90  Aligned_cols=44  Identities=25%  Similarity=0.355  Sum_probs=36.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNN   62 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~   62 (456)
                      ...|+|||.|-+|+.+|..|++. |..+++|+|.+.+.....+++
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~   74 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN   74 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence            45799999999999999999985 887899999887655444444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=88.27  E-value=3.1  Score=42.09  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=57.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-C-
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-Y-   97 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~-   97 (456)
                      .+|+|+|+|++|.-.+..+-+.|.+.+.++|.+.                   .|.+.+++    ....-.+..... . 
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~----~~g~~~~~~~~~~~~  226 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKE----AGGADVVVNPSEDDA  226 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHH----hCCCeEeecCccccH
Confidence            3799999999999999999999999999998433                   23333322    111111111000 0 


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCe
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM  138 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip  138 (456)
                      ...+.+..  -=.++|+||.|..+........++++..+.-
T Consensus       227 ~~~~~~~t--~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v  265 (350)
T COG1063         227 GAEILELT--GGRGADVVIEAVGSPPALDQALEALRPGGTV  265 (350)
T ss_pred             HHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            00010000  0136999998888766677777788777764

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=88.24  E-value=0.27  Score=50.87  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=37.7

Q ss_pred             ccccccCHHHH----HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcE
Q 012768            4 STLRIWGEQGQ----AALEKASVCLLNCGPTGSETLKNLVLGGIGSI   46 (456)
Q Consensus         4 RQlrlwG~~~q----~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~i   46 (456)
                      +|.|+|+.+..    ..|++++|+|||+|+.|..-|-||--+|+..+
T Consensus        17 ~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv   63 (487)
T PRK05225         17 GKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS   63 (487)
T ss_pred             ccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence            46789998766    78999999999999999999999999999543

>PRK09242 tropinone reductase; Provisional

Probab=88.02  E-value=1.8  Score=41.11  Aligned_cols=34  Identities=9%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|++++++|.| .|++|.++++.|+..|. ++++++
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~   40 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVA   40 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEe
Confidence            36678999998 58999999999999997 577776

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=87.99  E-value=0.39  Score=47.83  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=34.4

Q ss_pred             ccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768            8 IWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus         8 lwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      -|.......+..++|.|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus       125 ~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~  167 (312)
T PRK15469        125 HWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR  167 (312)
T ss_pred             CcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            365333346888999999999999999999999998 4667764

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.92  E-value=1.3  Score=41.76  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |++.+++|.|+ |++|..+++.|...|. +++++|
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~   36 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALID   36 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            56789999996 9999999999999997 577776

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.75  E-value=3  Score=41.35  Aligned_cols=32  Identities=25%  Similarity=0.285  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .++|||+|+|++|--...-+-..|.+++.++|
T Consensus       170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d  201 (354)
T KOG0024|consen  170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITD  201 (354)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCcEEEee
Confidence            58999999999999999999999999999998

>PLN02366 spermidine synthase

Probab=87.63  E-value=3.1  Score=41.38  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=23.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~   53 (456)
                      ...+||++|+|+-|  +++.+++ .++.+++++|-|.
T Consensus        91 ~pkrVLiIGgG~G~--~~rellk~~~v~~V~~VEiD~  125 (308)
T PLN02366         91 NPKKVLVVGGGDGG--VLREIARHSSVEQIDICEIDK  125 (308)
T ss_pred             CCCeEEEEcCCccH--HHHHHHhCCCCCeEEEEECCH
Confidence            35789999987522  2334444 5789999998554

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=87.60  E-value=2.3  Score=45.15  Aligned_cols=64  Identities=20%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             HHHHHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCE
Q 012768           12 QGQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVK   90 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~   90 (456)
                      .-+.-+.+++|+|-|+ |++|+|+++.++..++++|.++|.|-.                   +-..+...|++..|..+
T Consensus       243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~-------------------~~~~i~~el~~~~~~~~  303 (588)
T COG1086         243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY-------------------KLYLIDMELREKFPELK  303 (588)
T ss_pred             HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH-------------------HHHHHHHHHHhhCCCcc
Confidence            3456789999999986 558999999999999999999986553                   34444455666655555


Q ss_pred             EEEE
Q 012768           91 AKFI   94 (456)
Q Consensus        91 v~~~   94 (456)
                      +..+
T Consensus       304 ~~~~  307 (588)
T COG1086         304 LRFY  307 (588)
T ss_pred             eEEE
Confidence            4443

>PLN02240 UDP-glucose 4-epimerase

Probab=87.57  E-value=4.4  Score=40.46  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=28.2

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |++++|+|.| .|.+|..+++.|+..|. +++++|
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~   36 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID   36 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            4568999998 58899999999999995 688876

>PLN02688 pyrroline-5-carboxylate reductase

Probab=87.49  E-value=3.2  Score=40.02  Aligned_cols=29  Identities=21%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC---CcEEEE
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI---GSITVI   49 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv---~~itlv   49 (456)
                      +|.+||+|.+|+.++++|...|.   ..++++
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~   33 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA   33 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence            69999999999999999999985   245554

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=87.46  E-value=2.3  Score=41.40  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=24.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEe
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLG--GIGSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~--Gv~~itlvD   50 (456)
                      +..+|.|||+|.+|..++++|...  |+.-..++|
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d   39 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV   39 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            457899999999999999999863  443223444

>PLN02928 oxidoreductase family protein

Probab=87.41  E-value=0.45  Score=48.12  Aligned_cols=42  Identities=26%  Similarity=0.265  Sum_probs=34.4

Q ss_pred             cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768            9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |+...-..|..++|.|+|+|.+|.++|+.|.-.|. +++.+|.
T Consensus       149 w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr  190 (347)
T PLN02928        149 LGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR  190 (347)
T ss_pred             cccccccCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence            54322235899999999999999999999999998 6888875

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=87.36  E-value=2.7  Score=46.43  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             HHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           12 QGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+...-++.+|+|.| +|-+|+.+++.|...|=-+++.+|.
T Consensus       308 ~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r  348 (660)
T PRK08125        308 PACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI  348 (660)
T ss_pred             chhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence            344556778899999 5779999999999864346777774

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=87.24  E-value=1.6  Score=42.27  Aligned_cols=108  Identities=8%  Similarity=0.084  Sum_probs=58.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEE---EeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITV---IDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itl---vD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      .||.|||||.+|..+++.|..-+...+.+   .|.+.-....+          .+..++-.-.+.|....|++-+++-  
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~DlVVE~A--   70 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL----------AGRVALLDGLPGLLAWRPDLVVEAA--   70 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh----------hccCcccCCHHHHhhcCCCEEEECC--
Confidence            58999999999999999986544433433   33221000011          0111111112333345677666542  


Q ss_pred             ChhhhhcCCcCCCC-CCcEEEEcC---CChHHHHHHHHHHHHcCCeE
Q 012768           97 YPEALIEMNPPFFS-QFTLVVATQ---LGEEKMIKLDRICREANVML  139 (456)
Q Consensus        97 ~~~~~~~~~~~~~~-~~dvVi~~~---~~~~~~~~l~~~~~~~~ip~  139 (456)
                      .+..+.+-.+..++ +.|+++.+.   .+......+.+.|++.+..+
T Consensus        71 ~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i  117 (267)
T PRK13301         71 GQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARI  117 (267)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEE
Confidence            23333222234454 789998653   34456778888888877543

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.23  E-value=2.3  Score=44.39  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +++++|+|+|.|++|..+|+.|...|. .+++.|.+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~   37 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK   37 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            457889999999999999999999997 58888744

>TIGR00417 speE spermidine synthase

Probab=87.05  E-value=5  Score=38.95  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d   52 (456)
                      ..+||++|+|. |. +++.++.. ++.+++++|-|
T Consensus        73 p~~VL~iG~G~-G~-~~~~ll~~~~~~~v~~veid  105 (270)
T TIGR00417        73 PKHVLVIGGGD-GG-VLREVLKHKSVEKATLVDID  105 (270)
T ss_pred             CCEEEEEcCCc-hH-HHHHHHhCCCcceEEEEeCC
Confidence            46999999976 33 33444444 48889999854

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=87.01  E-value=2.9  Score=39.80  Aligned_cols=34  Identities=18%  Similarity=0.362  Sum_probs=27.0

Q ss_pred             HHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 012768           15 AALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVI   49 (456)
Q Consensus        15 ~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlv   49 (456)
                      +.....+|+|+|+ |.+|..+++.|+..|.. ++.+
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~   47 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG   47 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence            3455789999995 88999999999998864 5443

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=86.90  E-value=1.2  Score=44.06  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|||+|..|..++.+|+..|. .++++|.+.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP   34 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            379999999999999999999996 688888653

>PRK12367 short chain dehydrogenase; Provisional

Probab=86.87  E-value=1.1  Score=42.92  Aligned_cols=40  Identities=15%  Similarity=0.213  Sum_probs=33.8

Q ss_pred             HHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           12 QGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      -.|.+|+.++++|.| .||+|.++++.|+..|. ++.+++.+
T Consensus         7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~   47 (245)
T PRK12367          7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS   47 (245)
T ss_pred             hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            368899999999998 57899999999999997 56766643

>PRK08655 prephenate dehydrogenase; Provisional

Probab=86.85  E-value=1.8  Score=45.30  Aligned_cols=30  Identities=17%  Similarity=0.243  Sum_probs=26.4

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|+|+| +|++|..+++.|...|. .++++|.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r   32 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGR   32 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            699997 89999999999999996 5788774

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=86.84  E-value=4.8  Score=43.33  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=25.5

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ....|+|.| .|++|..+++.|+..|. ++++++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~  111 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGV  111 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEe
Confidence            455688888 58999999999999996 466554

>PRK01581 speE spermidine synthase; Validated

Probab=86.82  E-value=3.9  Score=41.48  Aligned_cols=37  Identities=16%  Similarity=0.224  Sum_probs=25.7

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .....+||++|+| .|..+..-|-..++.++++||-|.
T Consensus       148 h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDp  184 (374)
T PRK01581        148 VIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDG  184 (374)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCH
Confidence            3456799999975 555444444445789999999554

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=86.75  E-value=0.91  Score=42.75  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+++++|+|.| .|++|..+++.|...|. ++++++.
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r   38 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDI   38 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            35678899998 68899999999999997 5777653

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=86.72  E-value=4.9  Score=41.28  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=26.6

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +..+|+|.| .|.+|..+++.|...|. ++++++.
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R   92 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR   92 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence            345899998 58899999999999996 4666653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=86.58  E-value=0.89  Score=44.91  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +..++|+|+|.|++|..+++.|...|. +++++|..
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            468999999999999999999999997 89998744

>PLN02572 UDP-sulfoquinovose synthase

Probab=86.49  E-value=1.9  Score=45.16  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++++.+|+|.| +|.+|+.+++.|+..|. .++++|.
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~   79 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN   79 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence            56778899998 68899999999999996 5888884

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=86.48  E-value=0.79  Score=49.11  Aligned_cols=34  Identities=12%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +++++|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            567889999999999999999999999 8999863

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=86.47  E-value=6.2  Score=38.11  Aligned_cols=92  Identities=14%  Similarity=0.225  Sum_probs=54.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcccccc----ccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLD----ESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~----~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .+|+|+|+.+-|..+++.|...|..-+..+=      ++.+...+..    .--.|....+.+++.+++           
T Consensus         1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~------t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~-----------   63 (256)
T TIGR00715         1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVT------TSEGKHLYPIHQALTVHTGALDPQELREFLKR-----------   63 (256)
T ss_pred             CeEEEEechHHHHHHHHHHHhCCCeEEEEEc------cCCccccccccCCceEEECCCCHHHHHHHHHh-----------
Confidence            3799999988899999999999854333321      1111111100    000122222222222221           


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHH--HHHHHHHHHHcCCeEEEE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEK--MIKLDRICREANVMLIFA  142 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~--~~~l~~~~~~~~ip~i~~  142 (456)
                                    .+.|+||+++.+...  ...+.+.|.+.++|++-.
T Consensus        64 --------------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~   98 (256)
T TIGR00715        64 --------------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF   98 (256)
T ss_pred             --------------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence                          157899999888765  456778999999997754

This enzyme was found to be a monomer by gel filtration.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=86.41  E-value=2.8  Score=40.98  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|||.|. |-||.++.+.|.  +-..++-.|...++                -.-.+.+.+.+++..|++-|++-.-...
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~D----------------itd~~~v~~~i~~~~PDvVIn~AAyt~v   63 (281)
T COG1091           2 KILITGANGQLGTELRRALP--GEFEVIATDRAELD----------------ITDPDAVLEVIRETRPDVVINAAAYTAV   63 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC--CCceEEeccCcccc----------------ccChHHHHHHHHhhCCCEEEECcccccc
Confidence            4999995 559999999988  44445555543322                2244667789999999998775321100


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS  144 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~  144 (456)
                      +-.+.+++      ...  .-+......+.+.|++.|.++|+.++
T Consensus        64 D~aE~~~e------~A~--~vNa~~~~~lA~aa~~~ga~lVhiST  100 (281)
T COG1091          64 DKAESEPE------LAF--AVNATGAENLARAAAEVGARLVHIST  100 (281)
T ss_pred             ccccCCHH------HHH--HhHHHHHHHHHHHHHHhCCeEEEeec
Confidence            00001100      000  01223345677899999999998875

>PRK13243 glyoxylate reductase; Reviewed

Probab=86.40  E-value=0.87  Score=45.81  Aligned_cols=36  Identities=11%  Similarity=0.126  Sum_probs=31.9

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..|..++|.|+|+|.+|..+|+.|...|. ++..+|.
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~  181 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR  181 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            35899999999999999999999999997 5777774

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=86.39  E-value=3.6  Score=40.58  Aligned_cols=34  Identities=12%  Similarity=0.048  Sum_probs=28.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +..+|+|+|+|++|..++.-+...|...+.++|.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            4568999999999999998888889988877763

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.38  E-value=2  Score=44.89  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=31.3

Q ss_pred             HHHhc-CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           15 AALEK-ASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        15 ~~L~~-~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      .++.+ .+|+|+|.|+.|...+..|...|- -.+++.|..
T Consensus         2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~   41 (438)
T PRK04663          2 DRWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTR   41 (438)
T ss_pred             CcccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            35556 789999999999999999999965 568888843

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=86.35  E-value=0.99  Score=45.76  Aligned_cols=44  Identities=25%  Similarity=0.365  Sum_probs=37.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNN   62 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~   62 (456)
                      .+.+|+|||.|-+|..+|-.|++.|. +++++|.+.+...+-+++
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~~   46 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGRN   46 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhcc
Confidence            46789999999999999999999999 999999888755444443

>PRK06046 alanine dehydrogenase; Validated

Probab=86.34  E-value=3  Score=41.76  Aligned_cols=75  Identities=17%  Similarity=0.205  Sum_probs=50.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ...+|.|+|+|+.|...+.+|. ..++..+.++|.+.                   .+++.+++.+.+..+ +.+.... 
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~~-~~v~~~~-  186 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVVG-CDVTVAE-  186 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC-
Confidence            3578999999999999999997 56899999987332                   466666666654333 3443332 


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      +.+       +.+. .|+|++|+.+
T Consensus       187 ~~~-------~~l~-aDiVv~aTps  203 (326)
T PRK06046        187 DIE-------EACD-CDILVTTTPS  203 (326)
T ss_pred             CHH-------HHhh-CCEEEEecCC
Confidence            211       2233 8999977754

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.25  E-value=0.96  Score=44.44  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|+|+|..|+.+|..|+..|. .++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999998 699998543

>PRK05854 short chain dehydrogenase; Provisional

Probab=86.24  E-value=2.4  Score=42.05  Aligned_cols=34  Identities=12%  Similarity=0.129  Sum_probs=28.3

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .|++++++|.| .+|+|.++++.|+..|. ++.+++
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~   45 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPV   45 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            46778899998 68899999999999996 577665

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=86.12  E-value=4.1  Score=39.96  Aligned_cols=31  Identities=32%  Similarity=0.413  Sum_probs=26.9

Q ss_pred             EEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           22 VCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        22 VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |+|.| +|-+|+++++.|...|...+.++|..
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence            78888 68899999999999998778888854

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=86.11  E-value=1.1  Score=44.00  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=27.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|||+|.+|..++++|+..|. .++++|.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~   34 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN   34 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999996 47788754

>PRK08818 prephenate dehydrogenase; Provisional

Probab=85.99  E-value=1.9  Score=43.94  Aligned_cols=34  Identities=15%  Similarity=0.019  Sum_probs=27.7

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+-+|+|||+ |.+|..+++.|-...-..++.+|.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            4678999999 999999999998653345777775

>PRK06199 ornithine cyclodeaminase; Validated

Probab=85.94  E-value=2.5  Score=43.25  Aligned_cols=76  Identities=17%  Similarity=0.251  Sum_probs=54.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH--cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC-EEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVL--GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV-KAKFIE   95 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl--~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v-~v~~~~   95 (456)
                      .+++.|+|+|.-+..-++.+..  .++.++.++|.+                   ..|+++.++.+.+..+.+ ++.+.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~~~~v~~~~  215 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQITNVEVVD  215 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCCCceEEEeC
Confidence            4789999999999999988865  469999998733                   357888888888776544 455432


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                       +.       .+.+.++|+|++|+.+
T Consensus       216 -s~-------~eav~~ADIVvtaT~s  233 (379)
T PRK06199        216 -SI-------EEVVRGSDIVTYCNSG  233 (379)
T ss_pred             -CH-------HHHHcCCCEEEEccCC
Confidence             22       2335689999976643

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=85.89  E-value=2.4  Score=35.22  Aligned_cols=87  Identities=16%  Similarity=0.246  Sum_probs=50.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcC--CCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGG--IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~G--v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      +|.|||+|..|...+..+...+  +.-..++|.+.                   .+++.++    +.. .+.  ..+ +.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~-------------------~~~~~~~----~~~-~~~--~~~-~~   54 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP-------------------ERAEAFA----EKY-GIP--VYT-DL   54 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH-------------------HHHHHHH----HHT-TSE--EES-SH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH-------------------HHHHHHH----HHh-ccc--chh-HH
Confidence            7899999999999999998873  32233555322                   2333332    222 222  222 22


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      +.+.+.     .+.|+|+.++.+ .....+...|.+.|++++
T Consensus        55 ~~ll~~-----~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~   90 (120)
T PF01408_consen   55 EELLAD-----EDVDAVIIATPP-SSHAEIAKKALEAGKHVL   90 (120)
T ss_dssp             HHHHHH-----TTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred             HHHHHh-----hcCCEEEEecCC-cchHHHHHHHHHcCCEEE
Confidence            233211     167888877765 345566667777887643

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=85.85  E-value=2.1  Score=40.80  Aligned_cols=34  Identities=12%  Similarity=0.117  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ++++++|+|.| .|++|..+++.|+..|. ++++++
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~   43 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSA   43 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEe
Confidence            46788999998 68999999999999998 577765

>PRK06436 glycerate dehydrogenase; Provisional

Probab=85.81  E-value=0.61  Score=46.26  Aligned_cols=43  Identities=19%  Similarity=0.156  Sum_probs=34.6

Q ss_pred             cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768            9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |.......|..++|.|+|+|.+|.++|+.|...|+ ++..+|..
T Consensus       112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~  154 (303)
T PRK06436        112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS  154 (303)
T ss_pred             CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            54333457999999999999999999998877787 57777753

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=85.77  E-value=0.91  Score=45.91  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=31.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            4579999999999999999999996 6999997654

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=85.77  E-value=3.9  Score=40.12  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             CcEEEEcC--ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNC--GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~--gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|||||.  ||+.-|++|.+   .+.++++||-
T Consensus        78 k~VLiiGgGdG~tlRevlkh~---~ve~i~~VEI  108 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHL---PVERITMVEI  108 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcC---CcceEEEEEc
Confidence            49999984  55556666654   4889999873

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=85.67  E-value=1.5  Score=45.26  Aligned_cols=110  Identities=16%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             hcCcEEEEcCChhHH-HHHHHHH----HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEE
Q 012768           18 EKASVCLLNCGPTGS-ETLKNLV----LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAK   92 (456)
Q Consensus        18 ~~~~VlIiG~gglG~-eiaknLv----l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~   92 (456)
                      ++-+|.+||.|+++. +.+..++    ...+..|.|+|-|.   +.+.            -=...+.+.+++.++.++++
T Consensus         2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~---~r~~------------~i~~~~~~~v~~~g~~~kv~   66 (442)
T COG1486           2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDE---ERLK------------IIAILAKKLVEEAGAPVKVE   66 (442)
T ss_pred             CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCH---HHHH------------HHHHHHHHHHHhhCCCeEEE
Confidence            456899999999864 3333332    44667889988322   1111            01225557778888888887


Q ss_pred             EEecChhhhhcCCcCCCCCCcEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEeeccceeeEE
Q 012768           93 FIEEYPEALIEMNPPFFSQFTLVVATQL--GEEKMIKLDRICREANVMLIFARSYGLTGFVR  152 (456)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~  152 (456)
                      .... .       .+.++++|.|+.+-.  ..+.+..=-++..++|+  +-..+.|..|+++
T Consensus        67 ~ttd-~-------~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~--~gqET~G~GGi~~  118 (442)
T COG1486          67 ATTD-R-------REALEGADFVITQIRVGGLEAREKDERIPLKHGL--YGQETNGPGGIFY  118 (442)
T ss_pred             EecC-H-------HHHhcCCCEEEEEEeeCCcccchhhhccchhhCc--cccccccccHHHh
Confidence            6542 1       234778999997643  33344444456666665  4477788777643

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=85.56  E-value=1  Score=45.13  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             HHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           14 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        14 q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ...|++++|.|||+|..|..+|++|..+|+ ++.+.+
T Consensus        12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~   47 (330)
T PRK05479         12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL   47 (330)
T ss_pred             hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence            356889999999999999999999999998 455544

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.55  E-value=3.7  Score=42.79  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +.+++|+|+|.|+.|..+++-|...|. +++..|..
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~   38 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR   38 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            456789999999999999999999997 68888854

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=85.45  E-value=1  Score=41.06  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=26.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|.|+|+|..|.-+|-.+++.|. +++++|.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            68999999999999999999996 599999644

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=85.39  E-value=1.1  Score=44.33  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=31.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE   55 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~   55 (456)
                      .|+|||.|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~   34 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG   34 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence            48999999999999999999999 89999988553

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=85.38  E-value=1.1  Score=45.00  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..|+..+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~  178 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY  178 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            46899999999999999999999999987 57888743

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=85.30  E-value=0.86  Score=46.57  Aligned_cols=40  Identities=23%  Similarity=0.381  Sum_probs=36.5

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d~v   54 (456)
                      ++|+..+|++.|+|+.|..+++.|+..|+.  +|.++|..-+
T Consensus       195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~  236 (432)
T COG0281         195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL  236 (432)
T ss_pred             CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence            478999999999999999999999999998  9999996543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.30  E-value=1.1  Score=43.99  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      -.+|.|||+|..|..+|.+|+..|. .++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3689999999999999999999997 58888844

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=85.21  E-value=1.1  Score=46.05  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=30.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ++|+|||.|-+|+.+|..|++.|. +++++|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            589999999999999999999996 699999875

>PRK15076 alpha-galactosidase; Provisional

Probab=85.18  E-value=4.4  Score=42.28  Aligned_cols=108  Identities=12%  Similarity=0.168  Sum_probs=61.6

Q ss_pred             CcEEEEcCChhHHHHHH--HHH-HcCC--CcEEEEeCCcccccCCCccccccccccCcchHH---H-HHHHHHHhCCCCE
Q 012768           20 ASVCLLNCGPTGSETLK--NLV-LGGI--GSITVIDGSKVEVGDLGNNFMLDESCVGESKAK---S-VCAFLQELNDAVK   90 (456)
Q Consensus        20 ~~VlIiG~gglG~eiak--nLv-l~Gv--~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~---~-~~~~l~~lnp~v~   90 (456)
                      .+|.|||+|++|...+-  .++ ..+.  ..++|+|-+.                   .|++   + +.+.+..+.+.++
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~-------------------er~~~~~~l~~~~~~~~~~~~~   62 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP-------------------ERLEESEIVARKLAESLGASAK   62 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH-------------------HHHHHHHHHHHHHHHhcCCCeE
Confidence            47999999998855544  665 2333  3799998432                   1222   2 3334444555566


Q ss_pred             EEEEecChhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHH-HHHHHcCCeEEEEeeccceeeEEee
Q 012768           91 AKFIEEYPEALIEMNPPFFSQFTLVVATQLG--EEKMIKLD-RICREANVMLIFARSYGLTGFVRIS  154 (456)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~-~~~~~~~ip~i~~~~~G~~G~v~~~  154 (456)
                      ++.... .       .+.++++|+||.+...  ........ ++..++|+--=...+.|..|..+..
T Consensus        63 i~~ttD-~-------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~  121 (431)
T PRK15076         63 ITATTD-R-------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRAL  121 (431)
T ss_pred             EEEECC-H-------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhh
Confidence            654321 1       2335689999977543  23232233 4777888752223677777765553

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=85.10  E-value=2.5  Score=44.16  Aligned_cols=75  Identities=12%  Similarity=0.054  Sum_probs=48.3

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHc-------CCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CC
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLG-------GIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DA   88 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~-------Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~   88 (456)
                      -.+|.|+|+ |.+|+.+|-.|+..       |+. ++.++|                   +.+.|++..+.-|+.-. |.
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD-------------------~~~~~a~G~amDL~daa~~~  160 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE-------------------RSKQALEGVAMELEDSLYPL  160 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc-------------------CCcchhHHHHHHHHHhhhhh
Confidence            358999999 99999999999988       553 466665                   33345655555555543 32


Q ss_pred             C-EEEEEecChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           89 V-KAKFIEEYPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        89 v-~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      . ++.+..        .+.+.+++.|+||.+..
T Consensus       161 ~~~v~i~~--------~~ye~~kdaDiVVitAG  185 (444)
T PLN00112        161 LREVSIGI--------DPYEVFQDAEWALLIGA  185 (444)
T ss_pred             cCceEEec--------CCHHHhCcCCEEEECCC
Confidence            2 222111        12345779999997743

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.09  E-value=1.2  Score=43.51  Aligned_cols=32  Identities=16%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|||+|-+|+.+|..|+..|. .++++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence            479999999999999999999998 79999854

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=85.06  E-value=2.9  Score=39.28  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=22.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcC---CCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGG---IGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~G---v~~itlvD~d~   53 (456)
                      +|.|||||++|..+++-+ +-|   +.-+.+.|.+.
T Consensus         2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~~   36 (255)
T COG1712           2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRDE   36 (255)
T ss_pred             eEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCCH
Confidence            689999999999998754 544   44455555433

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=85.04  E-value=4.1  Score=30.68  Aligned_cols=57  Identities=16%  Similarity=0.236  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768          396 DISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       396 D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      ..+-+...++--...++++  ..+...+++++..---.+.|..|++.|++..|++|++.
T Consensus         9 h~~fI~a~anLrA~~f~I~--~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~   65 (67)
T PF02134_consen    9 HLDFIYAAANLRAQNFGIP--PLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQ   65 (67)
T ss_dssp             HHHHHHHHHHHHHHHTT-----S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCC--cccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHh
Confidence            3444444444444555554  24556666666222335778888999999999999874

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....

>PRK07063 short chain dehydrogenase; Provisional

Probab=84.82  E-value=3  Score=39.68  Aligned_cols=34  Identities=12%  Similarity=0.206  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|.+++|+|.| .||+|.++++.|+..|.. +.++|
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~   38 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALAD   38 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence            46788999998 578999999999999974 77765

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=84.76  E-value=1.4  Score=43.21  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=28.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|.|||+|.+|+.++.+|...|. .++++|.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            58999999999999999999996 688887543

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07062 short chain dehydrogenase; Provisional

Probab=84.76  E-value=3.7  Score=39.14  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |+++.++|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r   40 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGR   40 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            56788999985 78999999999999985 777653

>TIGR00518 alaDH alanine dehydrogenase

Probab=84.73  E-value=1.2  Score=45.53  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +...+|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            567889999999999999999999999 59999853

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.72  E-value=1.3  Score=43.48  Aligned_cols=33  Identities=15%  Similarity=0.313  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ++|.|||+|.+|..+|.+|+..|. .++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            479999999999999999999996 589998553

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=84.60  E-value=0.94  Score=44.44  Aligned_cols=112  Identities=16%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             EEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh--hhh
Q 012768           24 LLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP--EAL  101 (456)
Q Consensus        24 IiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~--~~~  101 (456)
                      +||+|..|..++++|...|. +++++|.+.-....+..        .|...+....+.++  +.++-+..+....  ..+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v   69 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA--------AGAQAAASPAEAAE--GADRVITMLPAGQHVISV   69 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH--------cCCeecCCHHHHHh--cCCEEEEeCCChHHHHHH
Confidence            58999999999999999996 68888865322211111        12211212222222  2344444433211  111


Q ss_pred             h---cCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768          102 I---EMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus       102 ~---~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      .   ..-...+..-.+||.+ +.+......+.+.+.+.++.++.+-..|
T Consensus        70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~G  118 (288)
T TIGR01692        70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSG  118 (288)
T ss_pred             HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCC
Confidence            1   0011223333466644 4455566778888888888888875544

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK06223 malate dehydrogenase; Reviewed

Probab=84.55  E-value=1.3  Score=43.84  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|.|+|+|.+|+-+|..++..|.+.+.++|.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            48999999999999999999998769999985

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=84.53  E-value=3.5  Score=39.12  Aligned_cols=129  Identities=16%  Similarity=0.270  Sum_probs=78.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh-
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE-   99 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~-   99 (456)
                      ++-+||+|-.|..++++|...|.. ++.+|-+.-....+..        -|..-+..+.+.+.+|.+- ++.++-.... 
T Consensus         2 ~iGmiGLGrMG~n~v~rl~~~ghd-vV~yD~n~~av~~~~~--------~ga~~a~sl~el~~~L~~p-r~vWlMvPag~   71 (300)
T COG1023           2 QIGMIGLGRMGANLVRRLLDGGHD-VVGYDVNQTAVEELKD--------EGATGAASLDELVAKLSAP-RIVWLMVPAGD   71 (300)
T ss_pred             cceeeccchhhHHHHHHHHhCCCe-EEEEcCCHHHHHHHHh--------cCCccccCHHHHHHhcCCC-cEEEEEccCCC
Confidence            567899999999999999999975 6666754433332222        2333344455666666543 3333221111 


Q ss_pred             ---hhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeeccc-----eeeEEeeeCCce
Q 012768          100 ---ALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYGL-----TGFVRISVKEHT  159 (456)
Q Consensus       100 ---~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G~-----~G~v~~~~~~~~  159 (456)
                         .+.++-...++.=|+||... .+.+...+-.+.....++-|+.+++.|-     .|+.+..-+.+.
T Consensus        72 it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~  140 (300)
T COG1023          72 ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEE  140 (300)
T ss_pred             chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHH
Confidence               12222245677889999764 4455555556677889999999988764     345555444433

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=84.45  E-value=1.2  Score=46.24  Aligned_cols=36  Identities=17%  Similarity=0.183  Sum_probs=32.1

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +...+|+|+|+|.+|..+|+.|...|+ +++++|.+.
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            578899999999999999999999999 699988544

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.45  E-value=1.3  Score=43.50  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|||+|..|+-+|.+++++|. .++++|.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            489999999999999999999997 599998543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=84.44  E-value=1.3  Score=44.08  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +.+|+|+|+|++|+-+|..|..+| ..++++..+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence            458999999999999999999999 5688887543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=84.40  E-value=7.1  Score=39.23  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      ..+|+|+|+||+|.-.++....+| -+++.+|                   .+..|.+.+    ++|--+.-+...+.+ 
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a----~~lGAd~~i~~~~~~-  221 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELA----KKLGADHVINSSDSD-  221 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHH----HHhCCcEEEEcCCch-
Confidence            578999999999999999999899 7888887                   334455433    344434433322111 


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCe
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM  138 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip  138 (456)
                       .. +   ..-..+|+|+.|.. .......-+.++..+.-
T Consensus       222 -~~-~---~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~  255 (339)
T COG1064         222 -AL-E---AVKEIADAIIDTVG-PATLEPSLKALRRGGTL  255 (339)
T ss_pred             -hh-H---HhHhhCcEEEECCC-hhhHHHHHHHHhcCCEE
Confidence             11 1   11112999998887 45554555555555543

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=84.39  E-value=3.7  Score=39.64  Aligned_cols=104  Identities=11%  Similarity=0.082  Sum_probs=55.8

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|+|+| .|.+|+.+++.|...|- ++++++..              ..|+.  ..+.+.+.+...+|++-++...... 
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r~--------------~~d~~--~~~~~~~~~~~~~~d~vi~~a~~~~-   62 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR-VVVALTSS--------------QLDLT--DPEALERLLRAIRPDAVVNTAAYTD-   62 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCCc--------------ccCCC--CHHHHHHHHHhCCCCEEEECCcccc-
Confidence            589999 58899999999999985 57777643              11221  2344555566555555443221100 


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                          ... .....+...  ..+......+.+.|++.+..+|..++...||
T Consensus        63 ----~~~-~~~~~~~~~--~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~  105 (287)
T TIGR01214        63 ----VDG-AESDPEKAF--AVNALAPQNLARAAARHGARLVHISTDYVFD  105 (287)
T ss_pred             ----ccc-cccCHHHHH--HHHHHHHHHHHHHHHHcCCeEEEEeeeeeec
Confidence                000 000000000  0112224455667777777888887755444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=84.32  E-value=1.3  Score=44.93  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      .|+|||.|-+|+.+|..|++.|. +++|+|....
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999996 6999998544

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=84.13  E-value=1.3  Score=45.91  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|||.|-+|+++|-.|++.|+. ++|+|.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~   33 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM   33 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence            35899999999999999999999975 899984

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=84.13  E-value=1.3  Score=45.80  Aligned_cols=35  Identities=14%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +...+|+|+|+|.+|..+++.+...|. +++++|.+
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d  234 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD  234 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467899999999999999999999999 68888744

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=84.07  E-value=1.2  Score=44.15  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=28.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ..|+|||+|..|+.+|..|.+.|+. ++|+|....
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence            4799999999999999999999987 889886543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.96  E-value=1.4  Score=43.12  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|+|+|..|+.+|..|+..|. .++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999997 59999844

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=83.94  E-value=1.4  Score=43.28  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++|.|||+|-+|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~   36 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD   36 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999995 68888854

>PRK06184 hypothetical protein; Provisional

Probab=83.92  E-value=1.3  Score=47.12  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +...|+|||+|..|..+|-.|.+.|+. ++|+|..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~   35 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA   35 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            457899999999999999999999995 9999864

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=83.72  E-value=3.1  Score=43.68  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=28.9

Q ss_pred             hcCcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSE-TLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~e-iaknLvl~Gv~~itlvD~d   52 (456)
                      +..+|+|+|+|+.|.. +|+.|...|.. +++.|..
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~~   40 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDLK   40 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECCC
Confidence            4568999999999999 79999999986 7777743

>cd08230 glucose_DH Glucose dehydrogenase

Probab=83.58  E-value=6.5  Score=39.46  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=28.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ...+|+|+|+|++|..++..+-..|+ +++.++.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            56899999999999999999889999 5777764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=83.46  E-value=11  Score=30.99  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=21.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+|+-+|||. |.-....+-..+-++++-+|
T Consensus        20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD   50 (124)
T TIGR02469        20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIE   50 (124)
T ss_pred             CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEc
Confidence            56899999965 55544444444447888888

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK09126 hypothetical protein; Provisional

Probab=83.40  E-value=1.4  Score=44.99  Aligned_cols=36  Identities=19%  Similarity=0.468  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      .+..|+|||+|..|+.+|..|.+.|+. ++|+|....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence            357899999999999999999999985 899986553

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=83.33  E-value=3.2  Score=40.32  Aligned_cols=31  Identities=19%  Similarity=0.395  Sum_probs=25.8

Q ss_pred             CcEEEEc-CChhHHHHHHHHHH-cCCCcEEEEe
Q 012768           20 ASVCLLN-CGPTGSETLKNLVL-GGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl-~Gv~~itlvD   50 (456)
                      -+|.|+| +|..|..+++.+.. .++.=+-++|
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d   34 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE   34 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            3799999 59999999999985 6777667777

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=83.31  E-value=2  Score=43.38  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE   55 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~   55 (456)
                      .|+|||.|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~   35 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA   35 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            69999999999999999999996 59999987654

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=83.31  E-value=1.6  Score=43.37  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|.|||+|-+|+-+|-.|+..|.+.++++|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            48999999999999999999999878999995

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK00536 speE spermidine synthase; Provisional

Probab=83.29  E-value=4.5  Score=39.20  Aligned_cols=30  Identities=7%  Similarity=0.078  Sum_probs=23.4

Q ss_pred             cCcEEEEcC--ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNC--GPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~--gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      -++|||+|.  ||+.-|++|.=     .++++||-|.
T Consensus        73 pk~VLIiGGGDGg~~REvLkh~-----~~v~mVeID~  104 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKYD-----THVDFVQADE  104 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCcC-----CeeEEEECCH
Confidence            479999985  67778888882     3999998654

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=83.26  E-value=9.7  Score=36.90  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLG   41 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~   41 (456)
                      .||.|+|||.+|..+++.|...
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~   23 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHD   23 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhC
Confidence            3799999999999999999875

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=83.13  E-value=1.2  Score=44.32  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=27.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |++++|.|||+|..|..++++|..+|+. +++.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~   33 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL   33 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence            4678999999999999999999999984 44433

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=83.04  E-value=1.5  Score=45.01  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp  147 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP  147 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            58899999999999999999999999994 677775

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.03  E-value=1.4  Score=41.45  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +++++|+|.| .|++|.++++.|+..|.. +++++.
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r   37 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDR   37 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            5678999999 588999999999999986 888763

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=83.02  E-value=4.4  Score=32.76  Aligned_cols=73  Identities=15%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHhCCCCEEEEEecChhhhhcC---CcCCCCCCcEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           73 SKAKSVCAFLQELNDAVKAKFIEEYPEALIEM---NPPFFSQFTLVVATQL--GEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        73 ~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~---~~~~~~~~dvVi~~~~--~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      .+....++.+++.+-  +...+ .........   -+..+.+.|+||+.++  +-.....+-+.|.++++|++.+.+.|.
T Consensus        10 ~~~~~~~~~~~~~G~--~~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~   86 (97)
T PF10087_consen   10 DRERRYKRILEKYGG--KLIHH-GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV   86 (97)
T ss_pred             ccHHHHHHHHHHcCC--EEEEE-ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence            455566677777554  33333 111111111   1345678899986543  445678889999999999999987665


Q ss_pred             e
Q 012768          148 T  148 (456)
Q Consensus       148 ~  148 (456)
                      .
T Consensus        87 ~   87 (97)
T PF10087_consen   87 S   87 (97)
T ss_pred             H
Confidence            3

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=82.93  E-value=6.4  Score=37.96  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|+.++|.|.|.|.+|+.+|+.|...|.+=+.+-|.
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~   70 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS   70 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            477899999999999999999999999877778874

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=82.92  E-value=1.6  Score=43.34  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=28.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|.|+|+|..|+.+|.+|+..|. +++++|.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            69999999999999999999997 699998653

>PRK05866 short chain dehydrogenase; Provisional

Probab=82.86  E-value=3.6  Score=40.29  Aligned_cols=34  Identities=12%  Similarity=0.249  Sum_probs=28.4

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .+.+.+|+|.| .||+|.++++.|+..|. ++.+++
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~   71 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVA   71 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEE
Confidence            45678899998 58999999999999996 577765

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=82.84  E-value=1.5  Score=46.34  Aligned_cols=33  Identities=15%  Similarity=0.364  Sum_probs=30.1

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +++++|+|+|+||+|..+++.|+..|+ +++++|
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~  362 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN  362 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            567899999999999999999999998 888876

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=82.84  E-value=1.5  Score=44.80  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            58899999999999999999999999985 667775

>PRK08264 short chain dehydrogenase; Validated

Probab=82.80  E-value=1.8  Score=40.58  Aligned_cols=35  Identities=11%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +.+++|+|.| .|++|.++++.|+..|..++++++.
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r   39 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR   39 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence            5678899998 5899999999999999977888864

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=82.71  E-value=1.6  Score=39.89  Aligned_cols=30  Identities=23%  Similarity=0.567  Sum_probs=23.2

Q ss_pred             EEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           23 CLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        23 lIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|||+|..|-.+|..|...|+..++|+|..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~   30 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN   30 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence            699999999999999999999889999954

...

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=82.65  E-value=5.3  Score=45.94  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..++|+|||+|+.|...|..|++.|. ++|++|..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~  338 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAF  338 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Confidence            47899999999999999999999998 59999854

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=82.63  E-value=4.3  Score=40.79  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +++.++|+|.|+ |=+|+.+++.|...|. +++.+|..
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~   48 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF   48 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            566789999994 7799999999999985 67788743

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=82.61  E-value=10  Score=36.63  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=23.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      ...+|+.+|||+ |..+.....+.|. ++++.+|.
T Consensus        77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~  110 (272)
T PRK11873         77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDM  110 (272)
T ss_pred             CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECC
Confidence            467999999988 7655544444565 36888873

>PRK06185 hypothetical protein; Provisional

Probab=82.59  E-value=1.3  Score=45.53  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=31.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+..|+|||.|.+|..+|..|++.|+ +++|+|...
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            45789999999999999999999998 599999763

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=82.58  E-value=4.4  Score=41.23  Aligned_cols=126  Identities=14%  Similarity=0.180  Sum_probs=72.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-   96 (456)
                      .++.|-|||++-.|+.+|.|++.-|.. +.+++.+.-....+-.+.--..+-+|..-.+.....|+.  |..-+--+.. 
T Consensus         2 ~~~~iGviGLaVMG~NLaLNi~~~G~~-VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~--PRkI~lMVkAG   78 (473)
T COG0362           2 MKADIGVIGLAVMGSNLALNIADHGYT-VAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEK--PRKILLMVKAG   78 (473)
T ss_pred             CccceeeEehhhhhHHHHHHHHhcCce-EEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcC--CceEEEEEecC
Confidence            357899999999999999999999986 777765443222211111001112333344444444433  4322222221 


Q ss_pred             Ch-hhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           97 YP-EALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        97 ~~-~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      .| +...+.-..++.+=|+||+.. .......+-++...+.++-||-+++.|
T Consensus        79 ~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSG  130 (473)
T COG0362          79 TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSG  130 (473)
T ss_pred             CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccc
Confidence            11 222222345678889999764 334444455667788899999887765

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=82.57  E-value=1.5  Score=44.83  Aligned_cols=35  Identities=14%  Similarity=0.416  Sum_probs=31.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ....|+|||+|..|..+|-.|++.|+. ++|+|...
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~   39 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLS-VALVEGRE   39 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence            346899999999999999999999996 99999764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=82.52  E-value=1.7  Score=41.30  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=64.0

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      |...+||=|||||-  -++.-|++.| .++|-+|.                   ++.-.+.++.+-.+  ..+.++....
T Consensus        58 l~g~~vLDvGCGgG--~Lse~mAr~G-a~VtgiD~-------------------se~~I~~Ak~ha~e--~gv~i~y~~~  113 (243)
T COG2227          58 LPGLRVLDVGCGGG--ILSEPLARLG-ASVTGIDA-------------------SEKPIEVAKLHALE--SGVNIDYRQA  113 (243)
T ss_pred             CCCCeEEEecCCcc--HhhHHHHHCC-CeeEEecC-------------------ChHHHHHHHHhhhh--ccccccchhh
Confidence            78899999999853  7889999999 77888872                   22222233222222  2334433333


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcC------CChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCcee
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQ------LGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV  160 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~------~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~  160 (456)
                      ..+++....    .+||+|+|..      ++........++++-.|+-|+..-..-+..+....++.+++
T Consensus       114 ~~edl~~~~----~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~v  179 (243)
T COG2227         114 TVEDLASAG----GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYV  179 (243)
T ss_pred             hHHHHHhcC----CCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHH
Confidence            333332211    5899999752      22223444455555555555555444444444444444444

>PRK08251 short chain dehydrogenase; Provisional

Probab=82.46  E-value=5.1  Score=37.65  Aligned_cols=32  Identities=6%  Similarity=0.207  Sum_probs=26.9

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +++|+|.| .|++|..+++.|+..|. ++++++.
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r   34 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCAR   34 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            46789998 78999999999999995 6777764

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=82.25  E-value=6.1  Score=39.54  Aligned_cols=74  Identities=12%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ..++.|||+|..|...++.|.. ..+.++.++|                   ....|++..++.+++..  +++.... +
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g--~~v~~~~-~  185 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYE--VPVRAAT-D  185 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhC--CcEEEeC-C
Confidence            4789999999999987777643 4567777776                   23457777777776543  3333332 2


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      +       .+.+++.|+|+.|+.+
T Consensus       186 ~-------~eav~~aDiVitaT~s  202 (325)
T TIGR02371       186 P-------REAVEGCDILVTTTPS  202 (325)
T ss_pred             H-------HHHhccCCEEEEecCC
Confidence            2       2335689999977644

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=82.21  E-value=1.6  Score=44.95  Aligned_cols=31  Identities=23%  Similarity=0.487  Sum_probs=28.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|+|||+|+.|+.+|..|++.|+. ++++|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence            699999999999999999999985 8899864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=82.03  E-value=5.4  Score=41.45  Aligned_cols=31  Identities=29%  Similarity=0.370  Sum_probs=27.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|+|+|+|+.|..+|+.|...|. .++..|..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~   31 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLK   31 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCC
Confidence            58999999999999999999998 58887743

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=82.03  E-value=8.6  Score=30.91  Aligned_cols=33  Identities=30%  Similarity=0.575  Sum_probs=26.3

Q ss_pred             hcCcEEEEcCChhHHHHHHH-HHHcCCCcEEEEe
Q 012768           18 EKASVCLLNCGPTGSETLKN-LVLGGIGSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiakn-Lvl~Gv~~itlvD   50 (456)
                      ++.+|+|+|+|++|..++.+ ....|.+-..++|
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~d   35 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFD   35 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEE
Confidence            35789999999999988743 3467888788888

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.01  E-value=4.7  Score=39.45  Aligned_cols=40  Identities=18%  Similarity=0.121  Sum_probs=33.9

Q ss_pred             CHHHHHHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEE
Q 012768           10 GEQGQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVI   49 (456)
Q Consensus        10 G~~~q~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlv   49 (456)
                      +...++++.++.|+|-|+ .|+|-++|+.|+..|.+-+.++
T Consensus         3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lva   43 (282)
T KOG1205|consen    3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVA   43 (282)
T ss_pred             ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee
Confidence            445678999999999995 7899999999999999866554

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=81.98  E-value=1.4  Score=46.42  Aligned_cols=37  Identities=16%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ......+|+|||+|..|...|+.|.+.|. ++++++..
T Consensus         6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~   42 (461)
T PLN02172          6 NPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFERE   42 (461)
T ss_pred             cCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecC
Confidence            34567899999999999999999999997 68888753

>PRK06139 short chain dehydrogenase; Provisional

Probab=81.93  E-value=3.1  Score=41.72  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+.+++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R   39 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR   39 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            467789999995 89999999999999974 777763

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=81.90  E-value=1.6  Score=44.43  Aligned_cols=34  Identities=18%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...|+|||+|..|+.+|..|.+.|+ +++|+|...
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~   40 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP   40 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence            4579999999999999999999997 599999764

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=81.89  E-value=1.8  Score=43.99  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ...|+|||.|..|..+|..|.+.|+ +++++|.+..
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            3579999999999999999999998 6999997654

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=81.83  E-value=1  Score=41.70  Aligned_cols=21  Identities=43%  Similarity=0.695  Sum_probs=20.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhc
Q 012768          434 LHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       434 l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      +.|+++++|++.+||++|+++
T Consensus       155 ~~p~~~~~~~~~~~e~~k~~~  175 (197)
T cd01492         155 LAPVAAVVGGILAQDVINALS  175 (197)
T ss_pred             cccHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999986

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07791 short chain dehydrogenase; Provisional

Probab=81.81  E-value=3.4  Score=40.31  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=28.4

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .++++.++|.| .+|+|.++++.|+..|.. +.++|
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~   37 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVND   37 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEee
Confidence            46778899998 689999999999999974 66665

>PRK07236 hypothetical protein; Provisional

Probab=81.78  E-value=1.8  Score=44.18  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ++..+|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            4568899999999999999999999985 89998653

>PRK07576 short chain dehydrogenase; Provisional

Probab=81.77  E-value=1.4  Score=42.24  Aligned_cols=38  Identities=8%  Similarity=0.100  Sum_probs=31.7

Q ss_pred             HHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           13 GQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        13 ~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++.++.+.+|+|.| .|++|.++++.|+..|.. +.++|.
T Consensus         3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r   41 (264)
T PRK07576          3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASR   41 (264)
T ss_pred             ccccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            45568889999998 489999999999999975 777764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=81.70  E-value=2.5  Score=43.86  Aligned_cols=37  Identities=32%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +....+|+|||.|-.|..+|+.|...++ .|||||+..
T Consensus         7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~   43 (424)
T PTZ00318          7 RLKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRN   43 (424)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCC
Confidence            5677899999999999999999965554 599998654

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=81.69  E-value=6.4  Score=36.73  Aligned_cols=34  Identities=21%  Similarity=0.226  Sum_probs=26.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHH--HcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLV--LGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLv--l~Gv~~itlvD~d   52 (456)
                      ..+|+|+|+|.+|..+++.+.  ..|+.-+-++|.+
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            458999999999999998643  4566666677754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=81.61  E-value=3.4  Score=43.72  Aligned_cols=36  Identities=14%  Similarity=0.273  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcc
Q 012768           18 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKV   54 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v   54 (456)
                      +..+|+|||.|+.|.++|..|. ..|+ +++|+|....
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence            4578999999999999999875 5676 4999986554

>PRK06270 homoserine dehydrogenase; Provisional

Probab=81.55  E-value=7.1  Score=39.36  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLG   41 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~   41 (456)
                      -+|.|+|+|.+|..+++.|...
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4899999999999999999754

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=81.53  E-value=3.1  Score=39.16  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=27.4

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |++++|+|.| .|++|..+++.|+..|. ++.++|
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~   34 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFD   34 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEec
Confidence            4578899998 68899999999999987 466665

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06523 short chain dehydrogenase; Provisional

Probab=81.44  E-value=4.6  Score=38.33  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ++++.+|+|.| .|++|.++++.|+..|.. +.+++.+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~   43 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR   43 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence            46788999998 589999999999999984 88887653

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=81.36  E-value=11  Score=37.39  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+|+|.|+|++|..++.-+-..|.++++.+|
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~  195 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVD  195 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            67999999999999999999899998777775

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=81.31  E-value=1.8  Score=44.40  Aligned_cols=36  Identities=11%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~   53 (456)
                      ++.+|+|||.|..|..+|..|.+.|. +.||++|.+.
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            56789999999999999999999997 4799998764

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=81.28  E-value=1.8  Score=47.77  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            589999999999999999999998 599999874

>PRK12939 short chain dehydrogenase; Provisional

Probab=81.15  E-value=4  Score=38.31  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=27.4

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +++++|+|.| .|++|..+++.|+..|.. +.+++
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~   38 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND   38 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence            5678999998 589999999999999974 55554

>PRK06398 aldose dehydrogenase; Validated

Probab=81.11  E-value=4.4  Score=38.69  Aligned_cols=36  Identities=14%  Similarity=0.161  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|+.++|+|.| .||+|.++++.|+..|. ++++++.+
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~   39 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK   39 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            46778999998 57999999999999997 57777754

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=81.10  E-value=6.9  Score=39.50  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=22.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEE
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGSITV   48 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itl   48 (456)
                      .+|+|+|+ |.+|.++++.|....--+++.
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~   32 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVA   32 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEE
Confidence            58999997 778999999998763334433

>PRK06194 hypothetical protein; Provisional

Probab=81.08  E-value=1.5  Score=42.42  Aligned_cols=35  Identities=9%  Similarity=0.039  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+++.+|+|.| .|++|.++++.|+..|. +++++|.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r   38 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV   38 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            35567899998 68999999999999997 5788763

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=81.08  E-value=2.4  Score=45.61  Aligned_cols=36  Identities=17%  Similarity=0.437  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE   55 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~   55 (456)
                      ...|+|||.|.+|+-+|..|++.|. +++|+|...+.
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~   41 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA   41 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            4679999999999999999999998 69999976543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=80.96  E-value=2.6  Score=40.39  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=21.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~   53 (456)
                      +..+|||+|.|+- +- ++.|. ..++.++++||-|.
T Consensus        76 ~p~~VLiiGgG~G-~~-~~ell~~~~~~~i~~VEiD~  110 (246)
T PF01564_consen   76 NPKRVLIIGGGDG-GT-ARELLKHPPVESITVVEIDP  110 (246)
T ss_dssp             ST-EEEEEESTTS-HH-HHHHTTSTT-SEEEEEES-H
T ss_pred             CcCceEEEcCCCh-hh-hhhhhhcCCcceEEEEecCh
Confidence            5789999996553 32 34444 44589999998544

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=80.92  E-value=1.8  Score=44.47  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..|+|||+|..|..+|-.|.+.|+ +++|+|...
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            579999999999999999999997 589999765

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=80.91  E-value=13  Score=34.71  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=55.9

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC-hh
Q 012768           22 VCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-PE   99 (456)
Q Consensus        22 VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~-~~   99 (456)
                      |+|+|+ |.+|..++..|...|.. ++.+=          |.          + .....+.|+..  .+++-..+.. ++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~----------R~----------~-~~~~~~~l~~~--g~~vv~~d~~~~~   56 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRALV----------RD----------P-SSDRAQQLQAL--GAEVVEADYDDPE   56 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEEE----------SS----------S-HHHHHHHHHHT--TTEEEES-TT-HH
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEEE----------ec----------c-chhhhhhhhcc--cceEeecccCCHH
Confidence            789995 88999999999997754 44431          11          0 11223444443  4554322221 11


Q ss_pred             hhhcCCcCCCCCCcEEEEcCC---C--hHHHHHHHHHHHHcCCeEEEEee
Q 012768          100 ALIEMNPPFFSQFTLVVATQL---G--EEKMIKLDRICREANVMLIFARS  144 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~---~--~~~~~~l~~~~~~~~ip~i~~~~  144 (456)
                      .+    ...+++.|.|+++..   +  ......+.+.|.+.+++.+.-.+
T Consensus        57 ~l----~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss  102 (233)
T PF05368_consen   57 SL----VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS  102 (233)
T ss_dssp             HH----HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred             HH----HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence            11    234789999987654   2  33466788899999988665433

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02494 adenosylhomocysteinase

Probab=80.78  E-value=2.1  Score=44.85  Aligned_cols=36  Identities=11%  Similarity=0.191  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +..++|+|+|+|.+|..+|+.+...|. +++++|.+.
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp  287 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP  287 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            578899999999999999999999999 588887554

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=80.66  E-value=13  Score=37.16  Aligned_cols=98  Identities=15%  Similarity=0.151  Sum_probs=60.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccc----cccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML----DESCVGESKAKSVCAFLQELNDAVKAKFI   94 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~----~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~   94 (456)
                      ..+|.|+|+||+|-.+..-+..+|.++|.-+|-..- .-.+.+.|-.    +..+.+     -+.+.+.+          
T Consensus       186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~fGAT~~vn~~~~~-----~vv~~i~~----------  249 (366)
T COG1062         186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKFGATHFVNPKEVD-----DVVEAIVE----------  249 (366)
T ss_pred             CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhcCCceeecchhhh-----hHHHHHHH----------
Confidence            568999999999999999999999999999984321 1112222111    111111     01111211          


Q ss_pred             ecChhhhhcCCcCCCC-CCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           95 EEYPEALIEMNPPFFS-QFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~-~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                                   ... ..|.+|.|..+......--+.|++.+.- +..+..+
T Consensus       250 -------------~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~-v~iGv~~  288 (366)
T COG1062         250 -------------LTDGGADYAFECVGNVEVMRQALEATHRGGTS-VIIGVAG  288 (366)
T ss_pred             -------------hcCCCCCEEEEccCCHHHHHHHHHHHhcCCeE-EEEecCC
Confidence                         122 6788898888877776667777776654 3343333

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.65  E-value=2.1  Score=41.97  Aligned_cols=34  Identities=12%  Similarity=0.167  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLNCGP-TGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG~gg-lG~eiaknLvl~Gv~~itlvD   50 (456)
                      .++.++|+|+|.|+ +|..++..|...|. .+|+++
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~  190 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH  190 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            36788999999999 99999999999999 899986

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=80.59  E-value=1.8  Score=44.44  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...|+|||+|..|..+|-.|.+.|+. ++|+|..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            46899999999999999999999985 8999864

>PRK07478 short chain dehydrogenase; Provisional

Probab=80.48  E-value=4.6  Score=38.21  Aligned_cols=33  Identities=15%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +++++++|.| .||+|.++++.|+..|. ++.+++
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~   37 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGA   37 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            5677899998 57899999999999998 477765

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=80.43  E-value=2.2  Score=41.12  Aligned_cols=33  Identities=18%  Similarity=0.458  Sum_probs=29.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      .|+|||+|..|..+|..|.+.|+ +++++|.+..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999999 5999987653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=80.37  E-value=2.7  Score=31.58  Aligned_cols=28  Identities=21%  Similarity=0.395  Sum_probs=24.8

Q ss_pred             EEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           24 LLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        24 IiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |||+|..|...|..|.+.|. +++|+|..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~   28 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKN   28 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            79999999999999999999 89999854

...

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=80.36  E-value=2.2  Score=44.77  Aligned_cols=37  Identities=16%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .|..++|+|+|+|.+|..+|+.|...|. +++++|.+.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4789999999999999999999999998 588886553

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=80.29  E-value=2  Score=43.87  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...|+|||.|..|..+|-.|.+.|+ +++|+|...
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence            3589999999999999999999997 699999653

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=80.22  E-value=2.2  Score=43.78  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=29.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            69999999999999999999996 699999874

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.21  E-value=2.3  Score=42.49  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=29.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ++|.|||+|.+|+.+|.+++.+|.. ++++|.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence            5799999999999999999999975 88998543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=80.20  E-value=2.2  Score=44.32  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|+|||+|-.|+|+|..|++.|+ +++|++.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~   31 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEM   31 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEec
Confidence            479999999999999999999997 5888874

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=80.14  E-value=2.4  Score=41.09  Aligned_cols=32  Identities=19%  Similarity=0.397  Sum_probs=29.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|+|||+|..|.+.|..|.+.|.. ++|+|...
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME   33 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence            699999999999999999999985 99999654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=80.07  E-value=13  Score=30.15  Aligned_cols=77  Identities=19%  Similarity=0.233  Sum_probs=44.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      +.+|+-+|||. |......+-+..-.+++-+|.+.                   .-.+.+.++..+....-+++.+..+.
T Consensus         2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            57899999864 44433333344445599998432                   13344556664444445555555443


Q ss_pred             hhhhcCCcCCCCCCcEEEEcC
Q 012768           99 EALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~  119 (456)
                       ..   ..+...+||+|++..
T Consensus        62 -~~---~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen   62 -EF---DPDFLEPFDLVICSG   78 (112)
T ss_dssp             -HG---GTTTSSCEEEEEECS
T ss_pred             -cc---CcccCCCCCEEEECC
Confidence             11   233455799999766

...

>CHL00194 ycf39 Ycf39; Provisional

Probab=80.07  E-value=8.5  Score=38.06  Aligned_cols=29  Identities=14%  Similarity=0.355  Sum_probs=24.6

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|+|.|+ |-+|+.+++.|...|. +++.++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~   31 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLV   31 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEE
Confidence            6999995 7799999999999996 477665

>PRK08013 oxidoreductase; Provisional

Probab=80.06  E-value=2  Score=44.09  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +..|+|||+|..|..+|-.|.+.|++ ++|+|...
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~   36 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV   36 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence            46899999999999999999999985 89999654

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=80.05  E-value=6  Score=39.43  Aligned_cols=34  Identities=18%  Similarity=0.129  Sum_probs=27.9

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +++.+|+|.| .|.+|+++++.|...|.. ++++|.
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r   38 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR   38 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence            3567899999 588999999999999974 666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		1e-86
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		1e-86
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		6e-86
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		6e-86
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		6e-86
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		2e-16
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		1e-11
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		4e-04
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		8e-11
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		4e-09
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		5e-09
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		5e-09
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		6e-07
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		6e-07
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		6e-07
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		7e-07
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		7e-07
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		9e-07
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		9e-07
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-06

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score =  317 bits (811), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 269/493 (54%), Gaps = 50/493 (10%)
Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 17  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 76
Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct: 77  QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 136
Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196
Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-D 244
           +++DL+  +   H HTP++VI+ K   +W +   G +P T              ++   D
Sbjct: 197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKPED 256
Query: 245 EDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA--------- 295
           E+N++EAI+          I  ++  +    D      +      WI A A         
Sbjct: 257 EENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEFVAKEG 314
Query: 296 ---------------------------------DCLAIEQRVRNNLKKLGREPESISKAT 322
                                            D  A+   V   L+ +G+ PESIS+  
Sbjct: 315 QGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKE 374
Query: 323 IKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAVDRFAA 380
           +K  C N+  L+V R R L +E+   ++   +I   + + D  + +  Y++LRAVDRF  
Sbjct: 375 LKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLRAVDRFHK 432
Query: 381 NYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAF 440
               YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H +AAF
Sbjct: 433 QQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPHTIAAF 491
Query: 441 IGGVASQEVIKVV 453
           +GG A+QEVIK++
Sbjct: 492 LGGAAAQEVIKII 504

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score =  316 bits (810), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 269/493 (54%), Gaps = 50/493 (10%)
Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 19  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 78
Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct: 79  QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 138
Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 139 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 198
Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-D 244
           +++DL+  +   H HTP++VI+ K   +W +   G +P T              ++   D
Sbjct: 199 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKPED 258
Query: 245 EDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA--------- 295
           E+N++EAI+          I  ++  +    D      +      WI A A         
Sbjct: 259 EENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEFVAKEG 316
Query: 296 ---------------------------------DCLAIEQRVRNNLKKLGREPESISKAT 322
                                            D  A+   V   L+ +G+ PESIS+  
Sbjct: 317 QGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKE 376
Query: 323 IKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAVDRFAA 380
           +K  C N+  L+V R R L +E+   ++   +I   + + D  + +  Y++LRAVDRF  
Sbjct: 377 LKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLRAVDRFHK 434
Query: 381 NYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAF 440
               YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H +AAF
Sbjct: 435 QQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPHTIAAF 493
Query: 441 IGGVASQEVIKVV 453
           +GG A+QEVIK++
Sbjct: 494 LGGAAAQEVIKII 506

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score =  314 bits (805), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/498 (35%), Positives = 269/498 (54%), Gaps = 55/498 (11%)
Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 20  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 79
Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct: 80  QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 139
Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 140 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 199
Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
           +++DL+  +   H HTP++VI+ K   +W +   G +P T              ++    
Sbjct: 200 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 259
Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA---- 295
               DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct: 260 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEF 317
Query: 296 --------------------------------------DCLAIEQRVRNNLKKLGREPES 317
                                                 D  A+   V   L+ +G+ PES
Sbjct: 318 VAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPES 377
Query: 318 ISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAV 375
           IS+  +K  C N+  L+V R R L +E+   ++   +I   + + D  + +  Y++LRAV
Sbjct: 378 ISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLRAV 435
Query: 376 DRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELH 435
           DRF      YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H
Sbjct: 436 DRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPH 494
Query: 436 AVAAFIGGVASQEVIKVV 453
            +AAF+GG A+QEVIK++
Sbjct: 495 TIAAFLGGAAAQEVIKII 512

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score =  314 bits (805), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/498 (35%), Positives = 269/498 (54%), Gaps = 55/498 (11%)
Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 17  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 76
Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct: 77  QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 136
Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 137 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 196
Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
           +++DL+  +   H HTP++VI+ K   +W +   G +P T              ++    
Sbjct: 197 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 256
Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA---- 295
               DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct: 257 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEF 314
Query: 296 --------------------------------------DCLAIEQRVRNNLKKLGREPES 317
                                                 D  A+   V   L+ +G+ PES
Sbjct: 315 VAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPES 374
Query: 318 ISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAV 375
           IS+  +K  C N+  L+V R R L +E+   ++   +I   + + D  + +  Y++LRAV
Sbjct: 375 ISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLRAV 432
Query: 376 DRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELH 435
           DRF      YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H
Sbjct: 433 DRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPH 491
Query: 436 AVAAFIGGVASQEVIKVV 453
            +AAF+GG A+QEVIK++
Sbjct: 492 TIAAFLGGAAAQEVIKII 509

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score =  314 bits (805), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 177/498 (35%), Positives = 269/498 (54%), Gaps = 55/498 (11%)
Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 19  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 78
Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct: 79  QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 138
Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 139 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 198
Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXXXMVAI-- 243
           +++DL+  +   H HTP++VI+ K   +W +   G +P T              ++    
Sbjct: 199 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 258
Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA---- 295
               DE+N++EAI+          I  ++  +    D      +      WI A A    
Sbjct: 259 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALKEF 316
Query: 296 --------------------------------------DCLAIEQRVRNNLKKLGREPES 317
                                                 D  A+   V   L+ +G+ PES
Sbjct: 317 VAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPES 376
Query: 318 ISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAV 375
           IS+  +K  C N+  L+V R R L +E+   ++   +I   + + D  + +  Y++LRAV
Sbjct: 377 ISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLRAV 434
Query: 376 DRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELH 435
           DRF      YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H
Sbjct: 435 DRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPH 493
Query: 436 AVAAFIGGVASQEVIKVV 453
            +AAF+GG A+QEVIK++
Sbjct: 494 TIAAFLGGAAAQEVIKII 511

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)
Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           +R+WG + Q  L  + V L+     G+E  KNL+L G+  +T++D  +V   D G  F++
Sbjct: 23  IRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLI 82
Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKF----IEEYPEALIEMNPPFFSQFTLVVATQLG 121
               VG ++A++     Q LN  V  K     IE+ PE+       FF+QF  V  T   
Sbjct: 83  RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPES-------FFTQFDAVCLTCCS 135
Query: 122 EEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 164
            + ++K+D+IC + ++       +G  G+   ++ EH  VE K
Sbjct: 136 RDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEK 178

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 4   STLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGS-----ITVIDGSKVEVGD 58
           + + ++G   Q  +  + V L+  G  G E LKN  L G+GS     I V D   +E  +
Sbjct: 410 NQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSN 469
Query: 59  LGNNFMLDESCVGESK----AKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTL 114
           L   F+     VG++K    A++VCA   +L   + AK  +  PE     N  F+     
Sbjct: 470 LNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDF 529
Query: 115 VVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 159
           V       +    +DR C      L+ + + G  G  ++ +   T
Sbjct: 530 VTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLT 574

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 26/133 (19%)
Query: 332 KLKVCR---YRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 386
           ++KV R   ++ L+ + SNP     D  K+  D    + +GF    +A+ +FA  +N   
Sbjct: 248 EVKVPRKISFKSLKQQLSNPEFVFSDFAKF--DRAAQLHLGF----QALHQFAVRHN--- 298
Query: 387 GEFDGPM-DEDISRLKTTAVSVLNDLGCN-------GSTLTEDLINEMCRFGAAELHAVA 438
           GE    M DED + L    + ++ DL          G  + EDLI E+      ++  V 
Sbjct: 299 GELPRTMNDEDANEL----IKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVV 354
Query: 439 AFIGGVASQEVIK 451
           AF GG+ +QEV+K
Sbjct: 355 AFFGGLVAQEVLK 367

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           L + G +    + +++V ++ C   G E  KN+ L G+ S+T+ D     + DL + + L
Sbjct: 13  LYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFL 72
Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
            E  +G  +AK   + L ELN  V    ++       E++  +   F  VV T+    K 
Sbjct: 73  TEDDIGVPRAKVTVSKLAELNQYVPVSVVD-------ELSTEYLKNFKCVVVTETSLTKQ 125
Query: 126 IKLDRICREANVMLIFARSYGLTGFV 151
           ++++    + ++  I A S GL G +
Sbjct: 126 LEINDFTHKNHIAYIAADSRGLFGSI 151

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 79/193 (40%), Gaps = 32/193 (16%)
Query: 16  ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 75
           A+    V ++  G  G E LKNLVL G   I +ID   ++V +L   F+  +  VG SKA
Sbjct: 16  AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 75
Query: 76  KSVCAFLQELNDAVKAKFIEEYPEALIE------MNP----PFFSQFTLVVATQLGEEKM 125
           +             K   ++ YP+A I       MNP     FF QF LV+         
Sbjct: 76  Q-----------VAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAAR 124
Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
             ++R+C  A+V LI + + G  G  +++  +  V E    H         P P  R F 
Sbjct: 125 NHVNRMCLAADVPLIESGTAGYLG--QVTTIKKGVTECYECH---------PKPTQRTFP 173
Query: 186 ETFDLNVPDPVAH 198
                N P    H
Sbjct: 174 GCTIRNTPSEPIH 186

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 16  ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 75
           A+    V ++  G  G E LKNLVL G   I +ID   ++V +L   F+  +  VG SKA
Sbjct: 14  AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 73
Query: 76  KSVCAFLQELNDAVKAKFIEEYPEALIE------MNP----PFFSQFTLVVATQLGEEKM 125
           +             K   ++ YP+A I       MNP     FF QF LV+         
Sbjct: 74  Q-----------VAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAAR 122
Query: 126 IKLDRICREANVMLIFARSYGLTGFV 151
             ++R+C  A+V LI + + G  G V
Sbjct: 123 NHVNRMCLAADVPLIESGTAGYLGQV 148

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 16  ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 75
           A+    V ++  G  G E LKNLVL G   I +ID   ++V +L   F+  +  VG SKA
Sbjct: 34  AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 93
Query: 76  KSVCAFLQELNDAVKAKFIEEYPEALIE------MNP----PFFSQFTLVVATQLGEEKM 125
           +             K   ++ YP+A I       MNP     FF QF LV+         
Sbjct: 94  Q-----------VAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAAR 142
Query: 126 IKLDRICREANVMLIFARSYGLTGFV 151
             ++R+C  A+V LI + + G  G V
Sbjct: 143 NHVNRMCLAADVPLIESGTAGYLGQV 168

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 11  EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 70
           E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     +
Sbjct: 29  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 88
Query: 71  GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           G  KA+    F   LND V    +  +   + + N  F+ QF ++V
Sbjct: 89  GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 131

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 11  EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 70
           E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     +
Sbjct: 32  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 91
Query: 71  GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           G  KA+    F   LND V    +  +   + + N  F+ QF ++V
Sbjct: 92  GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 11  EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 70
           E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     +
Sbjct: 32  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 91
Query: 71  GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           G  KA+    F   LND V    +  +   + + N  F+ QF ++V
Sbjct: 92  GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 11  EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 70
           E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     +
Sbjct: 32  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 91
Query: 71  GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           G  KA+    F   LND V    +  +   + + N  F+ QF ++V
Sbjct: 92  GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 11  EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 70
           E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     +
Sbjct: 32  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 91
Query: 71  GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           G  KA+    F   LND V    +  +   + + N  F+ QF ++V
Sbjct: 92  GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 11  EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 70
           E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     +
Sbjct: 61  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 120
Query: 71  GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           G  KA+    F   LND V    +  +   + + N  F+ QF ++V
Sbjct: 121 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 163

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 11  EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 70
           E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     +
Sbjct: 42  ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 101
Query: 71  GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           G  KA+    F   LND V    +  +   + + N  F+ QF ++V
Sbjct: 102 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 144

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 11  EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 70
           E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     +
Sbjct: 403 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 462
Query: 71  GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           G  KA+    F   LND V    +  +   + + N  F+ QF ++V
Sbjct: 463 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 505

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	1e-137
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	5e-62
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	1e-13
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	3e-36
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	3e-23
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	4e-06
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	4e-16
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	1e-10
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	3e-09
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	9e-09
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	6e-08
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	7e-08
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	5e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-05
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-05

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  404 bits (1040), Expect = e-137
 Identities = 178/489 (36%), Positives = 279/489 (57%), Gaps = 42/489 (8%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 19  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 78

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct: 79  QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 138

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 139 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 198

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-D 244
           +++DL+  +   H HTP++VI+ K   +W +   G +P T +EK +F++L++  ++   D
Sbjct: 199 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKPED 258

Query: 245 EDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIGRPWI----- 291
           E+N++EAI+          I  ++  +              SF+  + A+          
Sbjct: 259 EENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQG 318

Query: 292 ---------------------------FAEADCLAIEQRVRNNLKKLGREPESISKATIK 324
                                       A+ D  A+   V   L+ +G+ PESIS+  +K
Sbjct: 319 NLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELK 378

Query: 325 SFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNN 384
             C N+  L+V R R L +E+   ++   +   + ++    +  Y++LRAVDRF      
Sbjct: 379 LLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGR 438

Query: 385 YPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGV 444
           YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H +AAF+GG 
Sbjct: 439 YPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPHTIAAFLGGA 497

Query: 445 ASQEVIKVV 453
           A+QEVIK++
Sbjct: 498 AAQEVIKII 506

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  204 bits (520), Expect = 5e-62
 Identities = 61/283 (21%), Positives = 112/283 (39%), Gaps = 30/283 (10%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           +R+WG + Q  L  + V L+     G+E  KNL+L G+  +T++D  +V   D G  F++
Sbjct: 23  IRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLI 82

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
               VG ++A++     Q LN  V    ++   E + +    FF+QF  V  T    + +
Sbjct: 83  RTGSVGRNRAEASLERAQNLNPMVD---VKVDTEDIEKKPESFFTQFDAVCLTCCSRDVI 139

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           +K+D+IC + ++       +G  G+   ++ EH  VE K         + +     R   
Sbjct: 140 VKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKL 199

Query: 186 ETFD----------------LNVP-----DPVAHKHTPYVVILIKMSEEWTNSHGGSLPS 224
           ++ +                L V         A K T     L+++  ++    G   PS
Sbjct: 200 DSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGR-DPS 258

Query: 225 TREEKREFKELLK-----SKMVAIDEDNYKEAIEASFKVFAPP 262
           +   + + + LL+        + I  D   E           P
Sbjct: 259 SDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAP 301

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score = 71.0 bits (174), Expect = 1e-13
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 369 YILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCR 428
           Y LL+ + +F  +    P       +ED   L      VL+ LG +   L ED      R
Sbjct: 240 YFLLQVLLKFRTDKGRDPSSDT--YEEDSELLLQIRNDVLDSLGISPDLLPEDF----VR 293

Query: 429 FGAAELHAVAAFIGGVASQEVIKVV 453
           +  +E+  V A +GG+ +QE++K +
Sbjct: 294 YCFSEMAPVCAVVGGILAQEIVKAL 318

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  141 bits (356), Expect = 3e-36
 Identities = 71/350 (20%), Positives = 124/350 (35%), Gaps = 40/350 (11%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           L + G++    ++ ++V +L     G E  KN+VL G+ S+TV D   V++ DL   F L
Sbjct: 14  LYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFL 73

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLG-EEK 124
            E  +G+ +     A L ELN  V    ++         +    SQF +VVAT     E 
Sbjct: 74  TEKDIGQKRGDVTRAKLAELNAYVPVNVLDS------LDDVTQLSQFQVVVATDTVSLED 127

Query: 125 MIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV-----------------ESKPDH 167
            +K++  C  + +  I + + GL G   + + +   V                       
Sbjct: 128 KVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDIEPDGTVT 187

Query: 168 FLDDLRLNNPWPELRKFAETF---DLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPS 224
            LDD R         +F+E      LN       +        I   +E+     G + +
Sbjct: 188 MLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKEYGEYKKGGIFT 247

Query: 225 TREEKRE--FKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPF 282
             +  R+  FK L +               E  F  FA       L    Q+        
Sbjct: 248 EVKVPRKISFKSLKQQ----------LSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRH 297

Query: 283 SIAIGRPWIFAEA-DCLAIEQRVRNNLKKLGREPESISKATIKSFCRNAR 331
           +  + R     +A + + +   +     ++  E   +++  IK     AR
Sbjct: 298 NGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQAR 347

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  102 bits (254), Expect = 3e-23
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 9/163 (5%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLG 60
           + ++G   Q  +  + V L+  G  G E LKN  L G+     G I V D   +E  +L 
Sbjct: 412 IAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLN 471

Query: 61  NNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY----PEALIEMNPPFFSQFTLVV 116
             F+     VG++K++     +  +N  +K K   +     PE     N  F+     V 
Sbjct: 472 RQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVT 531

Query: 117 ATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 159
                 +    +DR C      L+ + + G  G  ++ +   T
Sbjct: 532 NALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLT 574

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 334 KVCRYRLLEDEFSNPSVPDIQKYLTD-EDYSVAMGFYILLRAVDRFAANYNN-YPGEFDG 391
           +   ++ L+ + SNP     +   +D   +  A   ++  +A+ +FA  +N   P   + 
Sbjct: 253 RKISFKSLKQQLSNP-----EFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMND 307

Query: 392 PMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIK 451
               ++ +L T       ++   G  + EDLI E+      ++  V AF GG+ +QEV+K
Sbjct: 308 EDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLK 367

Query: 452 VV 453
             
Sbjct: 368 AC 369

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score = 79.8 bits (196), Expect = 4e-16
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 3   MSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNN 62
           M+  R    +   A+    V ++  G  G E LKNLVL G   I +ID   ++V +L   
Sbjct: 1   MALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQ 60

Query: 63  FMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIE--MNPPFFSQFTLVV-ATQ 119
           F+  +  VG SKA+     + +         I  Y ++++    N  FF QF LV+ A  
Sbjct: 61  FLFQKKHVGRSKAQVAKESVLQFYPKAN---IVAYHDSIMNPDYNVEFFRQFILVMNALD 117

Query: 120 LGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 159
               +   ++R+C  A+V LI + + G  G V    K  T
Sbjct: 118 NRAARNH-VNRMCLAADVPLIESGTAGYLGQVTTIKKGVT 156

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 77.3 bits (190), Expect = 2e-15
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 10  GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC 69
            E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     
Sbjct: 31  TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 90

Query: 70  VGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           +G  KA+    FL +         +  +   + + N  F+ QF ++V
Sbjct: 91  IGRPKAEVAAEFLNDRVPNCN---VVPHFNKIQDFNDTFYRQFHIIV 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 1e-12
 Identities = 78/490 (15%), Positives = 140/490 (28%), Gaps = 153/490 (31%)

Query: 14  QAALEKAS----VCLLNCGPTGS-------ETLKNLVL-----GGIGSITVIDGSKVEVG 57
           + AL +      V +   G  GS       +   +  +       I  + +   +     
Sbjct: 141 RQALLELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL--KNCNSPE 196

Query: 58  DL---GNNFMLDESCVGESKAKSVCAFLQELNDAVKAK----FIEEYPEALIEMNPPFFS 110
            +       +        S++         ++            + Y   L         
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------- 247

Query: 111 QFTLV---VATQLGEEKMIK-LDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPD 166
              LV   V       K     +  C+    +L+  R   +T F+  +   H  ++    
Sbjct: 248 ---LVLLNVQN----AKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 167 HFLDD--LRLNNPWPELRKFAET--FDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSL 222
               D    L      L K+ +    DL  P        P  + +I            S+
Sbjct: 297 TLTPDEVKSL------LLKYLDCRPQDL--P-REVLTTNPRRLSII----------AESI 337

Query: 223 PSTREEKREFKELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPF 282
              R+    +          ++ D     IE+S  V  P   +    K+      S FP 
Sbjct: 338 ---RDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAEYR----KMFD--RLSVFPP 383

Query: 283 SIAIGRP-------WIFAEADCLAIEQRVRNNLKK---LGREPESISKATI-------KS 325
           S  I  P       W             V N L K   + ++P+  S  +I       K 
Sbjct: 384 SAHI--PTILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKV 437

Query: 326 FCRNA----RKLKVCRYRLLED-EFSNPSVPDIQKYLTDEDYSVAMGFYI---LLRA--- 374
              N     R + V  Y + +  +  +   P + +Y     YS     +I   L      
Sbjct: 438 KLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYF----YS-----HIGHHLKNIEHP 487

Query: 375 --VDRFAANYNNYPGEFDGPMDEDISRLKTTAV----SVLNDLG---------CNGSTLT 419
             +  F   + ++   F   +++ I R  +TA     S+LN L          C+     
Sbjct: 488 ERMTLFRMVFLDF--RF---LEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 420 EDLINEMCRF 429
           E L+N +  F
Sbjct: 542 ERLVNAILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 57/449 (12%), Positives = 126/449 (28%), Gaps = 140/449 (31%)

Query: 52  SKVEVGDL--------GNNFMLDESCVGESKAKSVCAFLQELNDA----VKAKFIEEY-- 97
           SK E+  +        G   +     +   + + V  F++E+       + +    E   
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 98  PEALIEM----------NPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 147
           P  +  M          +   F+++  V   Q   +    L  +    NV++      G+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLI-----DGV 158

Query: 148 TGF-----VRISVKEHTVVESKPDH-FLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHT 201
            G             + V        F         W           LN+     + ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIF---------W-----------LNL----KNCNS 194

Query: 202 PYVVILI------KMSEEWTN--SHGGSLPSTREE-KREFKELLKSKM-----VAIDEDN 247
           P  V+ +      ++   WT+   H  ++       + E + LLKSK      + +    
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 248 YKEAIEASFKVFAPPGIKLALSKVL-QSADSSFFPFSIAIGR--------PWIFAEADCL 298
             +A  A    F    +     K+L  +       F  A                  +  
Sbjct: 255 NAKAWNA----F---NLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 299 AI-EQRVRNNLKKLGREPESISKATIKSFCRNARKLK--VCRYRLLEDEFSNPSVPDIQK 355
           ++  + +    + L RE  + +   +      A  ++  +  +    D +        + 
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSII---AESIRDGLATW----DNW--------KH 349

Query: 356 YLTDEDYSVAMGFYILLRAVDRFAANYNNYPGE----FDG----PMDEDISRLKTTAVSV 407
              D+          L   ++         P E    FD     P    I         +
Sbjct: 350 VNCDK----------LTTIIESSLNVLE--PAEYRKMFDRLSVFPPSAHIPT------IL 391

Query: 408 LNDLGCNGST-LTEDLINEMCRFGAAELH 435
           L+ +  +        ++N++ ++   E  
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 10  GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC 69
            E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     
Sbjct: 402 TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 461

Query: 70  VGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 116
           +G  KA+    FL +         +  +   + + N  F+ QF ++V
Sbjct: 462 IGRPKAEVAAEFLNDRVPNCN---VVPHFNKIQDFNDTFYRQFHIIV 505

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Length = 353

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 4/109 (3%)

Query: 9   WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDES 68
                Q  L+ A V +L CG  G+     L   GIG I +ID  ++E  +L    +  E 
Sbjct: 108 NPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSED 167

Query: 69  CVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVV 116
            VG++K + +   L + N  +    + E    + +        +  + V
Sbjct: 168 DVGKNKTEVIKRELLKRNSEIS---VSEIALNINDYTDLHKVPEADIWV 213

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score = 55.2 bits (134), Expect = 9e-09
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           L      GQ  L  + V ++  G  G+     L   G+G++ + D   V + +L    + 
Sbjct: 15  LDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILF 74

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVV 116
               +   K++     L +LN  ++   +    + L         ++  +V+
Sbjct: 75  TTEDIDRPKSQVSQQRLTQLNPDIQ---LTALQQRLTGEALKDAVARADVVL 123

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 19/89 (21%), Positives = 36/89 (40%)

Query: 7   RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLD 66
           RI  +     ++   V LL  G  G    + L+  G+  IT +D   V   +     + +
Sbjct: 315 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN 374

Query: 67  ESCVGESKAKSVCAFLQELNDAVKAKFIE 95
               G+ KA+   A L+ +   + A  ++
Sbjct: 375 FEDCGKPKAELAAASLKRIFPLMDATGVK 403

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score = 52.5 bits (127), Expect = 7e-08
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR +   GQ AL+ + V ++  G  G    + L   G+G++T++D   V + +L    + 
Sbjct: 18  LRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLH 77

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVV 116
            ++ VG+ K +S    L  +N  +    I      L +       ++  LV+
Sbjct: 78  SDATVGQPKVESARDALTRINPHIA---ITPVNALLDDAELAALIAEHDLVL 126

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 7   RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLD 66
           R+        +   +V ++  G  GS T + L   GIG + + D  KVE+ ++ N     
Sbjct: 24  RMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANM-NRLFFQ 82

Query: 67  ESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEAL 101
               G SK ++    L+ +N  V     E +   +
Sbjct: 83  PHQAGLSKVQAAEHTLRNINPDVL---FEVHNYNI 114

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 22/49 (44%)

Query: 228 EKREFKELLKSKMVAIDEDNYKEAIEASFKVFAP---PGIKLALSKVLQ 273
           EK+  K+L                 +AS K++A    P   LA+   ++
Sbjct: 18  EKQALKKL-----------------QASLKLYADDSAPA--LAIKATME 47

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/86 (22%), Positives = 34/86 (39%)

Query: 7   RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLD 66
           RI  +     ++   V LL  G  G    + L+  G+  IT +D   V   +     + +
Sbjct: 22  RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN 81

Query: 67  ESCVGESKAKSVCAFLQELNDAVKAK 92
               G+ KA+   A L+ +   + A 
Sbjct: 82  FEDCGKPKAELAAASLKRIFPLMDAT 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	99.98
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	99.97
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	99.97
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	99.97
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.97
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	99.96
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	99.96
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	99.95
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	99.95
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.54
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.4
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.27
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.25
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.19
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.12
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.09
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.88
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.73
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.73
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.63
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.62
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.53
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.43
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.43
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.43
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.29
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.21
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.21
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.06
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.95
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.81
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.77
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.65
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.59
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.55
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.48
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.36
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.33
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.28
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.26
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.19
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.18
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.18
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.16
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.09
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.04
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.94
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.9
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.89
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.82
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.76
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.75
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.67
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.64
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.62
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.54
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.5
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.49
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.46
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.46
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	94.42
1lnq_A	336	MTHK channels, potassium channel related protein;	94.32
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	94.27
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.25
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.23
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.22
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.2
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.2
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	94.13
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.13
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.08
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	94.07
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.07
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.06
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.01
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.01
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	93.96
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.81
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.75
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.63
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.62
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.58
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	93.57
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.56
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.54
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.48
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.4
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.39
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.38
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	93.36
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.31
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.3
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.3
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.22
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	93.18
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.06
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	93.0
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.98
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.98
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.97
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.96
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.94
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	92.88
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.86
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.85
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.85
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.72
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.65
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	92.65
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.49
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	92.46
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.44
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	92.36
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	92.34
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	92.33
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.32
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	92.3
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.3
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	92.22
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.13
3qha_A	296	Putative oxidoreductase; seattle structural genomi	92.11
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	92.08
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	92.03
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	91.99
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	91.98
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	91.95
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	91.6
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	91.6
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.58
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	91.54
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.45
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	91.38
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	91.38
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	91.38
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	91.34
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	91.32
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	91.13
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.13
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	91.12
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	91.11
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	91.09
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.03
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	90.98
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	90.86
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.74
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	90.71
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	90.68
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	90.68
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	90.64
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	90.58
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	90.56
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	90.53
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	90.49
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	90.39
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	90.19
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	90.14
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.11
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	90.09
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	90.05
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.04
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.02
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	89.95
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	89.95
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	89.92
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	89.82
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	89.6
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	89.6
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	89.58
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	89.55
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	89.42
4hb9_A	412	Similarities with probable monooxygenase; flavin,	89.42
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	89.42
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	89.39
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	89.33
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	89.22
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	89.2
2cul_A	232	Glucose-inhibited division protein A-related PROT	89.13
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	89.08
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	89.07
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	89.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	88.95
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	88.95
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	88.93
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	88.73
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	88.73
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	88.66
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	88.51
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	88.48
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.47
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	88.45
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	88.4
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	88.39
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	88.37
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	88.36
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	88.3
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	88.29
1xq6_A	253	Unknown protein; structural genomics, protein stru	88.26
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	88.26
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	88.21
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	88.21
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	88.03
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	87.92
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	87.92
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	87.92
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	87.89
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	87.87
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	87.86
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	87.71
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	87.69
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	87.68
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	87.57
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	87.51
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	87.42
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	87.39
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	87.25
4f6c_A	427	AUSA reductase domain protein; thioester reductase	87.22
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	87.21
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	87.19
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	87.15
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	87.13
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	87.13
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	87.11
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	87.11
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	87.08
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	87.06
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	87.03
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	87.03
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	86.96
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	86.95
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	86.9
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	86.89
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	86.87
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	86.86
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	86.81
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	86.8
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	86.72
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	86.69
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	86.64
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	86.6
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	86.6
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	86.55
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	86.46
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	86.35
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	86.35
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	86.33
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	86.31
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.28
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	86.08
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	86.07
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	86.01
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	85.99
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	85.91
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	85.88
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	85.84
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	85.75
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	85.73
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	85.72
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	85.55
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	85.52
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	85.51
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	85.48
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	85.48
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	85.45
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	85.4
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	85.37
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	85.28
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	85.2
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	85.14
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	85.14
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	85.12
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	85.08
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	85.07
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	84.99
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	84.98
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	84.92
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	84.91
3dme_A	369	Conserved exported protein; structural genomics, P	84.9
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	84.88
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	84.85
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	84.84
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	84.83
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	84.82
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	84.79
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	84.73
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	84.68
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	84.66
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	84.66
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	84.65
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	84.61
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	84.53
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	84.53
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	84.52
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	84.48
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	84.45
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	84.45
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	84.36
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	84.35
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	84.33
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	84.31
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	84.23
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	84.2
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	84.15
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	84.13
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	84.02
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	84.02
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	84.01
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	84.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	83.96
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	83.96
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	83.95
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	83.95
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	83.94
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	83.84
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	83.82
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	83.81
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	83.78
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	83.78
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	83.75
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	83.75
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	83.7
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	83.69
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	83.69
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	83.66
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	83.66
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	83.65
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	83.58
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	83.54
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	83.53
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	83.52
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	83.51
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	83.44
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	83.44
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	83.42
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	83.33
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	83.33
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	83.2
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	83.18
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	83.14
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	83.13
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	83.11
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	83.08
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	83.07
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	83.05
1xq1_A	266	Putative tropinone reducatse; structural genomics,	83.04
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	83.02
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	82.99
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	82.91
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	82.89
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	82.85
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	82.78
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	82.7
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	82.7
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	82.68
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	82.65
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	82.64
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	82.62
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	82.61
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	82.6
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	82.59
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	82.54
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	82.54
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	82.47
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	82.47
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	82.47
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	82.46
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	82.43
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	82.38
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	82.32
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	82.28
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	82.26
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	82.17
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	82.02
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	81.98
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	81.9
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	81.88
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	81.87
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	81.86
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	81.83
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	81.81
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	81.76
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	81.71
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	81.68
2bry_A	497	NEDD9 interacting protein with calponin homology a	81.64
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	81.63
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	81.63
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	81.62
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	81.61
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	81.6
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	81.59
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	81.57
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	81.56
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	81.52
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	81.52
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	81.36
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	81.33
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	81.3
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	81.27
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	81.23
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	81.17
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	81.0
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	80.99
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	80.99
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	80.96
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	80.93
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	80.91
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	80.89
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	80.83
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	80.79
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	80.78
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	80.7
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	80.63
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	80.6
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	80.59
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	80.44
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	80.44
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	80.42
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	80.37
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	80.35
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	80.34
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	80.34
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	80.33
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	80.33
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	80.25
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	80.23
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	80.2
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	80.19
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	80.19
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	80.17
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	80.16
4f6l_B	508	AUSA reductase domain protein; thioester reductase	80.13
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	80.1
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	80.07
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	80.01
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	80.89

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=3e-90  Score=725.64  Aligned_cols=451  Identities=39%  Similarity=0.724  Sum_probs=410.4

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      ||||+|+||.++|++|++++|+|+|+||+|+++||||+++|||+|||+|+|.|+.+||+|||+++.+|+|++||++++++
T Consensus        15 Y~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~   94 (531)
T 1tt5_A           15 YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEF   94 (531)
T ss_dssp             THHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHH
T ss_pred             hhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCceeE
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV  161 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~  161 (456)
                      |+++||+|+++++......+.+...+++++||+||+|.++...+..++++|+.+++|+|.+++.|++|++++++|+|+++
T Consensus        95 l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~~~p~~~~~  174 (531)
T 1tt5_A           95 LQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVI  174 (531)
T ss_dssp             HHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEECSCEEES
T ss_pred             HHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCCeEEEEEEcCCceec
Confidence            99999999999887765554445678899999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc
Q 012768          162 ESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMV  241 (456)
Q Consensus       162 ~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~~  241 (456)
                      +++|+...+++|+.+|||++.+++.++|.+.++...++|+|++++++++++.||..|+|++|++++++.+|++++.++|+
T Consensus       175 d~~~~~~~~~lr~~~p~P~~~~~~~~~~~~~~~~~~~~~~p~vv~~~~ale~~k~~~~g~~P~~~~~~~~f~~~i~~~~~  254 (531)
T 1tt5_A          175 ESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGIL  254 (531)
T ss_dssp             CCCCSSCCCCCCSSSCCHHHHHHHHTCC-------CGGGSCHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHTTS
T ss_pred             cCCCCCCCCcccccCCCCCchhhhhccCcccccCCCcCCchHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhhcc
Confidence            99998888999999999999999999999988889999999999999999999999999999999999999999999886


Q ss_pred             C-CCCCCHHHHHHHHhhccCCCCccHHHHHHHh--------cCCCCchHHHHHhh-------------------------
Q 012768          242 A-IDEDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIG-------------------------  287 (456)
Q Consensus       242 ~-~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~--------~~~~~fw~l~~~l~-------------------------  287 (456)
                      . .+++||+||+++++++++|+++|.+++++|+        ..++.||++++||+                         
T Consensus       255 ~~~~e~N~~Ea~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~s~~Fwil~~alk~F~~~~~~g~lPl~g~ipDm~s~t~  334 (531)
T 1tt5_A          255 KPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSG  334 (531)
T ss_dssp             SCTTHHHHHHHHHHHHHHSCCCCCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHHHTTTTTSCCCCCCCCCCSSCHH
T ss_pred             cCccccchHHHHHHHHhhcCCccCcHHHHHHhcccccccccCCCchHHHHHHHHHHHHHhcCCCCCCCCCccCccccchh
Confidence            5 4678999999999999999999999999996        23578999999987                         


Q ss_pred             ------hhH-HHHHhhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcccceEeeccccccccCCCChhhHhhhhccc
Q 012768          288 ------RPW-IFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDE  360 (456)
Q Consensus       288 ------~iY-~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~d~  360 (456)
                            ++| +||.+|+++|..+++++++++|++++.++...++.||||.+.+++++++++++++..|..+. ....+|+
T Consensus       335 ~Y~~lq~iy~~ka~~D~~~v~~~v~~~~~~~~~~~~~i~~~~i~~f~kn~~~l~~i~~~~l~~~~~~~~~~~-~~~~~~~  413 (531)
T 1tt5_A          335 KYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINK-DEIISSM  413 (531)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTGGGCEEECCCCHHHHHSTTTSCH-HHHHHHT
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHhchhhhhcccccchHhhhccccchh-hhhhhhh
Confidence                  389 99999999999999999999999888999999999999999999999999999998775421 0122333


Q ss_pred             -cchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHH
Q 012768          361 -DYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAA  439 (456)
Q Consensus       361 -~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa  439 (456)
                       +.+++..||++|||+++|.++|||+|++++.+.++|+++|.+++.+++++.++. ..+++++++|+||+++++||||||
T Consensus       414 ~~~~~~~~~~~~~~al~~f~~~~gr~P~~~~~~~~~D~~~l~~~~~~~~~~~~~~-~~~~~~~~~e~~r~~~~el~pvaA  492 (531)
T 1tt5_A          414 DNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPHTIAA  492 (531)
T ss_dssp             TSTTSTHHHHHHHHHHHHHHHHHSSCTTCSTTTHHHHHHHHHHHHHHHHHHHTCC-CCCCHHHHHHHHHTTTCCCHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHHHhCCCCCccccchHHHHHHHHHHHHHHHHhcCCc-ccccHHHHHHHHHhcCCCcCHHHH
Confidence             345678999999999999999999999887667899999999999999988874 568899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 012768          440 FIGGVASQEVIKVVF  454 (456)
Q Consensus       440 ~~GGiaaQEvIK~i~  454 (456)
                      |+||+|||||||+||
T Consensus       493 ~~GGi~AQEviK~iT  507 (531)
T 1tt5_A          493 FLGGAAAQEVIKIIT  507 (531)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999987

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-58  Score=507.66  Aligned_cols=353  Identities=23%  Similarity=0.351  Sum_probs=280.7

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      ||||+|+||.+||++|++++|+|+|+||+|+++||||+++|||+|||+|+|.|+.+||+|||+++.+|+|++||++++++
T Consensus        10 Y~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~   89 (1015)
T 3cmm_A           10 YSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAK   89 (1015)
T ss_dssp             HHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHH
T ss_pred             ccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC-ce
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE-HT  159 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~-~~  159 (456)
                      |+++||+|+++++...   +   +.+++++||+||+|.+ +...+..|+++|+++++|+|++++.|++|++|+++++ |.
T Consensus        90 L~~lNP~v~v~~~~~~---l---~~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~d~~~~~~  163 (1015)
T 3cmm_A           90 LAELNAYVPVNVLDSL---D---DVTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFT  163 (1015)
T ss_dssp             HTTSCTTSCEEECCCC---C---CSTTGGGCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEECCSCEE
T ss_pred             HHHHCCCCeEEEecCC---C---CHHHHhcCCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEecCCCceE
Confidence            9999999999986653   2   3467889999999999 9999999999999999999999999999999999987 56


Q ss_pred             eEecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHh
Q 012768          160 VVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWT-NSHGGSLPSTREEKREFKELLKS  238 (456)
Q Consensus       160 ~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~-~~~~g~~p~~~~~~~~f~~~~~~  238 (456)
                      +++++++         .|++.+...   +|.           |++   +++++.|+ ..++|       ++..|+++  +
T Consensus       164 c~~~~~~---------~p~~~~i~~---i~~-----------p~~---v~~l~~~~h~~~~g-------d~v~F~ev--~  208 (1015)
T 3cmm_A          164 VLDPTGE---------EPRTGMVSD---IEP-----------DGT---VTMLDDNRHGLEDG-------NFVRFSEV--E  208 (1015)
T ss_dssp             ESBSSCC---------CCCEEEEEE---ECT-----------TCE---EEESTTCCCCCCTT-------CEEEEECC--B
T ss_pred             EeeCCCC---------CCccccccC---CCC-----------Cce---eEeeecccccCCCC-------CeEEEEee--c
Confidence            5565544         355544332   211           221   23333332 11223       23445554  4


Q ss_pred             hccCCCCCCHHHHHHHHhhccCCCCccHHHHHHHhcCCCCchHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhhCCCCCCC
Q 012768          239 KMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESI  318 (456)
Q Consensus       239 ~~~~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~~~~~~fw~l~~~l~~iY~ka~~D~~~~~~~~~~~l~~~g~~~~~i  318 (456)
                      +|.+   +|+.|+.  ..+++.               ...||+                              + +++.+
T Consensus       209 gm~e---lN~~e~~--~i~~~~---------------p~~f~I------------------------------~-Dts~~  237 (1015)
T 3cmm_A          209 GLDK---LNDGTLF--KVEVLG---------------PFAFRI------------------------------G-SVKEY  237 (1015)
T ss_dssp             TSGG---GGSSCCE--ECEEEE---------------TTEEEC------------------------------S-CCTTT
T ss_pred             cchh---hcCccce--eeEEcC---------------CceeEe------------------------------c-ccchh
Confidence            5543   3433322  122222               234563                              1 23445


Q ss_pred             CHHHHHHHHHhcccceEeeccccccccCCCChhhHhhhhccc-cchhHHHHHHHHHHHHHHHHHc-CCCCCCCCCCchhh
Q 012768          319 SKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDE-DYSVAMGFYILLRAVDRFAANY-NNYPGEFDGPMDED  396 (456)
Q Consensus       319 ~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~al~~F~~~~-gr~P~~~~~~~~~D  396 (456)
                      +.|..++++++++.++.+.|+++++.+++|..     ..+|+ +.+++..+|++|||+++|.++| ||+|++++   ++|
T Consensus       238 ~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p~~-----l~~d~~k~~~~~~l~~~~~Al~~F~~~~~gr~P~~~~---~~D  309 (1015)
T 3cmm_A          238 GEYKKGGIFTEVKVPRKISFKSLKQQLSNPEF-----VFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMN---DED  309 (1015)
T ss_dssp             CCCCBCCEEEECCCCEEECCCCHHHHHHSCCB-----CCSCGGGTHHHHHHHHHHHHHHHHHHHTTTCCCCTTC---HHH
T ss_pred             hhhhcCceeEEecCCcccCHHHHHHHHcChHH-----HHHHHhccCcchHHHHHHHHHHHHHHhcCCCCCCCCC---HHH
Confidence            55555566788899999999999999998842     22343 3567889999999999999999 99999754   689


Q ss_pred             HHHHHHHHHHHHhhcCCC--C-CCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768          397 ISRLKTTAVSVLNDLGCN--G-STLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       397 ~~~l~~~~~~i~~~~~~~--~-~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      ++++.+++++++++.+..  . ..+++++++++||+++++|||||||+||+|||||||+||
T Consensus       310 ~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKaiT  370 (1015)
T 3cmm_A          310 ANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACS  370 (1015)
T ss_dssp             HHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHhcchHHHHHHHHhc
Confidence            999999999998875532  1 368899999999999999999999999999999999987

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=3.2e-54  Score=431.71  Aligned_cols=300  Identities=24%  Similarity=0.379  Sum_probs=243.4

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      ||||+|+||.++|++|++++|+|+|+||+|+++||||+++|||+|||+|+|.|+.+||+|||+++++|+|++||++++++
T Consensus        19 Y~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~   98 (346)
T 1y8q_A           19 YDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLER   98 (346)
T ss_dssp             HHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHH
T ss_pred             HHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCceeE
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV  161 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~  161 (456)
                      |+++||+|+++++....   .+...+++++||+||+|.++...+..++++|+++++|||.+++.|++|++|+++++|+++
T Consensus        99 l~~lnp~v~v~~~~~~~---~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v~~d~~~~~~~  175 (346)
T 1y8q_A           99 AQNLNPMVDVKVDTEDI---EKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFV  175 (346)
T ss_dssp             HHHTCTTSEEEEECSCG---GGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEEEEECSEEEEE
T ss_pred             HHhHCCCeEEEEEeccc---CcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccEEEEEEecCCCCEE
Confidence            99999999999877643   233467789999999999999999999999999999999999999999999999999988


Q ss_pred             ecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc
Q 012768          162 ESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMV  241 (456)
Q Consensus       162 ~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~~  241 (456)
                      +.++++                               +..|..+      +   ...++                     
T Consensus       176 ~~~~~~-------------------------------~~~p~~~------~---~~~~~---------------------  194 (346)
T 1y8q_A          176 EEKTKV-------------------------------AKVSQGV------E---DGPDT---------------------  194 (346)
T ss_dssp             EECC----------------------------------------------------------------------------
T ss_pred             EcCCCC-------------------------------cCCCccc------c---cCCCC---------------------
Confidence            766442                               0111100      0   00000                     


Q ss_pred             CCCCCCHHHHHHHHhhccCCCCccHHHHHHHhcCCCCchHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhhCCCCCCCCHH
Q 012768          242 AIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISKA  321 (456)
Q Consensus       242 ~~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~~~~~~fw~l~~~l~~iY~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~  321 (456)
                        .+.||+                                                                 ++     
T Consensus       195 --~~~~~d-----------------------------------------------------------------~~-----  202 (346)
T 1y8q_A          195 --KRAKLD-----------------------------------------------------------------SS-----  202 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --Cccccc-----------------------------------------------------------------CC-----
Confidence              001110                                                                 00     


Q ss_pred             HHHHHHHhcccceEeeccccccccCCCChh-hHhhhhccccchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHHH
Q 012768          322 TIKSFCRNARKLKVCRYRLLEDEFSNPSVP-DIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRL  400 (456)
Q Consensus       322 ~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~-~~~~~~~d~~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~l  400 (456)
                            ..++..+.+.|.||++.++.|... .+.     .+.+++..+|++|||+++|.++|||+|++.  ..++|+++|
T Consensus       203 ------~~~~~~~~~~f~~l~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~al~~f~~~~~~~P~~~--~~~~d~~~l  269 (346)
T 1y8q_A          203 ------ETTMVKKKVVFCPVKEALEVDWSSEKAK-----AALKRTTSDYFLLQVLLKFRTDKGRDPSSD--TYEEDSELL  269 (346)
T ss_dssp             ------CCCEEEEEEECCCHHHHTSCCSCSHHHH-----HHHTTSCTHHHHHHHHHHHHHHSSSCCCGG--GHHHHHHHH
T ss_pred             ------ceEEEeceeeccCHHHHhcCCchhhhhh-----hhcccccHHHHHHHHHHHHHHHhCCCCCCC--CCHHHHHHH
Confidence                  224667888899998888776431 110     012456689999999999999999999731  236899999


Q ss_pred             HHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012768          401 KTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       401 ~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~~vaa~~GGiaaQEvIK~i~  454 (456)
                      .+++.++.++.+++...+++++++++    .++|||||||+||++||||||++|
T Consensus       270 ~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~l~pv~AiiGGi~aQEviK~it  319 (346)
T 1y8q_A          270 LQIRNDVLDSLGISPDLLPEDFVRYC----FSEMAPVCAVVGGILAQEIVKALS  319 (346)
T ss_dssp             HHHHHHHHHTTTCCGGGSCGGGGGSS----CSBCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcccCCHHHHHHh----cCCccHHHHHHHHHHHHHHHHHhc
Confidence            99999999888765545778877755    889999999999999999999997

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=1.3e-32  Score=281.73  Aligned_cols=145  Identities=23%  Similarity=0.323  Sum_probs=131.7

Q ss_pred             CHHHHH-HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCC
Q 012768           10 GEQGQA-ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA   88 (456)
Q Consensus        10 G~~~q~-~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~   88 (456)
                      |.+.++ +|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||++++++|+++||+
T Consensus        30 g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~  109 (434)
T 1tt5_B           30 STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN  109 (434)
T ss_dssp             CSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC
Confidence            444465 5599999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc------------CCeEEEEeeccceeeEEeeeC
Q 012768           89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA------------NVMLIFARSYGLTGFVRISVK  156 (456)
Q Consensus        89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~------------~ip~i~~~~~G~~G~v~~~~~  156 (456)
                      ++++.+....   .+.+.+++++||+||+|.++.+.+..+|+.|...            ++|+|++++.|+.|++++..|
T Consensus       110 v~v~~~~~~i---~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~~g~~G~v~v~~p  186 (434)
T 1tt5_B          110 CNVVPHFNKI---QDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILP  186 (434)
T ss_dssp             CCCEEEESCG---GGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEEETTEEEEEEECT
T ss_pred             CEEEEEeccc---chhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEeccccceeEEEEECC
Confidence            9988876543   3334577899999999999999999999999874            999999999999999999876


Q ss_pred             C
Q 012768          157 E  157 (456)
Q Consensus       157 ~  157 (456)
                      +
T Consensus       187 ~  187 (434)
T 1tt5_B          187 G  187 (434)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=2.6e-33  Score=272.20  Aligned_cols=200  Identities=18%  Similarity=0.194  Sum_probs=133.0

Q ss_pred             Ccccccc--cCH-HHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHH
Q 012768            2 SMSTLRI--WGE-QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV   78 (456)
Q Consensus         2 y~RQlrl--wG~-~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~   78 (456)
                      |||||.|  ||. ++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||| ++.+|+|++||+++
T Consensus        16 y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~aa   94 (292)
T 3h8v_A           16 PRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAA   94 (292)
T ss_dssp             ----------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHHHHH
T ss_pred             chHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHHHH
Confidence            9999988  998 9999999999999999999999999999999999999999999999999996 58899999999999


Q ss_pred             HHHHHHhCCCCEEEEEecChhhhhcCC-cCCC-----------CCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           79 CAFLQELNDAVKAKFIEEYPEALIEMN-PPFF-----------SQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        79 ~~~l~~lnp~v~v~~~~~~~~~~~~~~-~~~~-----------~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      +++|+++||+++++++.......  ++ .+++           +++|+||+|.|+...+..+|+.|+++++|||++++.|
T Consensus        95 ~~~L~~iNP~v~v~~~~~~l~~~--~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~  172 (292)
T 3h8v_A           95 EHTLRNINPDVLFEVHNYNITTV--ENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE  172 (292)
T ss_dssp             HHHHHHHCTTSEEEEECCCTTSH--HHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECT
T ss_pred             HHHHHhhCCCcEEEEecccCCcH--HHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeec
Confidence            99999999999999876543210  01 1121           6899999999999999999999999999999999975


Q ss_pred             --ceeeEEeeeCCceeEecCCCCCCCCcccCCCCchhhhhh---hcccCCCCCCcccCCCcHHHHHHHHHHHHHH
Q 012768          147 --LTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA---ETFDLNVPDPVAHKHTPYVVILIKMSEEWTN  216 (456)
Q Consensus       147 --~~G~v~~~~~~~~~~~~~~~~~~~dlrl~~p~p~l~~~~---~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~  216 (456)
                        +.|++.+..|+.            ..|+.|-||.+..-.   ..++..+.-....+.++.++..++++|.+|-
T Consensus       173 ~~~~Gqv~~~~pg~------------t~Cy~Cl~p~~~~~~~~~~~~~~~gvc~~~l~~~~g~vgslqA~EalK~  235 (292)
T 3h8v_A          173 NAVSGHIQLIIPGE------------SACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILVQNVLKF  235 (292)
T ss_dssp             TSSEEEEEEECTTT------------SCCTTSSSCCCCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEEECCCC------------CCCHhhcCCccccccccccchhhcCcccCCcchHHHHHHHHHHHHHHHH
Confidence              899999887651            125666666432100   0111000000013344556666777776664

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=99.98  E-value=2.1e-32  Score=262.29  Aligned_cols=154  Identities=16%  Similarity=0.241  Sum_probs=140.8

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      |+||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||++++.+|+|++||++++
T Consensus         9 y~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~   88 (251)
T 1zud_1            9 YSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ   88 (251)
T ss_dssp             THHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHH
T ss_pred             hhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                      ++|+++||+++++.+......  ++..++++++|+||+|.++...+..+++.|++.++|+|.+++.|+.|++++..++
T Consensus        89 ~~l~~~np~~~v~~~~~~~~~--~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~~~~p~  164 (251)
T 1zud_1           89 QRLTQLNPDIQLTALQQRLTG--EALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPP  164 (251)
T ss_dssp             HHHHHHCTTSEEEEECSCCCH--HHHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEEBTEEEEEEECTT
T ss_pred             HHHHHHCCCCEEEEEeccCCH--HHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEeccccceEEEEEccC
Confidence            999999999999887643211  0113456789999999999999999999999999999999999999999986553

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=99.97  E-value=1.3e-30  Score=288.80  Aligned_cols=149  Identities=23%  Similarity=0.284  Sum_probs=138.1

Q ss_pred             ccccCHHHHHHH-hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH
Q 012768            6 LRIWGEQGQAAL-EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE   84 (456)
Q Consensus         6 lrlwG~~~q~~L-~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~   84 (456)
                      -..+|.++|+++ ++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||+++.+|||++||++++++|++
T Consensus       397 ~~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~  476 (805)
T 2nvu_B          397 DFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLND  476 (805)
T ss_dssp             TCCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHH
Confidence            356899999988 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH------------cCCeEEEEeeccceeeEE
Q 012768           85 LNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE------------ANVMLIFARSYGLTGFVR  152 (456)
Q Consensus        85 lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~------------~~ip~i~~~~~G~~G~v~  152 (456)
                      +||+++++.+....   .+.+.+++++||+||+|.++...+..||+.|+.            +++|+|++++.|+.|+++
T Consensus       477 ~np~~~v~~~~~~~---~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~G~~~  553 (805)
T 2nvu_B          477 RVPNCNVVPHFNKI---QDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAR  553 (805)
T ss_dssp             HSTTCEEEEEESCG---GGSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEE
T ss_pred             HCCCCEEEEEeccc---cccHHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCceeEE
Confidence            99999998876543   334567788999999999999999999999987            499999999999999999


Q ss_pred             eeeCC
Q 012768          153 ISVKE  157 (456)
Q Consensus       153 ~~~~~  157 (456)
                      ++.++
T Consensus       554 ~~~p~  558 (805)
T 2nvu_B          554 VILPG  558 (805)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99876

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=99.97  E-value=3.5e-31  Score=280.17  Aligned_cols=150  Identities=27%  Similarity=0.356  Sum_probs=138.3

Q ss_pred             cccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH
Q 012768            5 TLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE   84 (456)
Q Consensus         5 QlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~   84 (456)
                      |+|+||.++|++|++++|+|||+||+||++|+||+++|||+|+|+|+|.|+.+||+|||+++.+|||++||++++++|++
T Consensus         3 qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~   82 (640)
T 1y8q_B            3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ   82 (640)
T ss_dssp             ---CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHT
T ss_pred             hhhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCEEEEEecChhhhhcC--CcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           85 LNDAVKAKFIEEYPEALIEM--NPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        85 lnp~v~v~~~~~~~~~~~~~--~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                      +||+++++++....   .+.  ..+++++||+||+|.++...+..++++|+.+++|+|.+++.|+.|++++..++
T Consensus        83 iNP~v~V~a~~~~i---~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p~  154 (640)
T 1y8q_B           83 FYPKANIVAYHDSI---MNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKG  154 (640)
T ss_dssp             TCTTCEEEEEESCT---TSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTT
T ss_pred             HCCCCeEEEEeccc---chhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecccceEEEECCC
Confidence            99999999877543   222  24678999999999999999999999999999999999999999999999876

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=99.97  E-value=1.2e-31  Score=256.68  Aligned_cols=154  Identities=18%  Similarity=0.277  Sum_probs=140.5

Q ss_pred             Ccccccc--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrl--wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      |+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+.+||+||++++.+|+|++|+++++
T Consensus        12 y~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~   91 (249)
T 1jw9_B           12 YNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESAR   91 (249)
T ss_dssp             THHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHH
T ss_pred             hhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCC
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE  157 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~  157 (456)
                      +++.++||.++++.+......-  ...+++.++|+||++.++...+..+++.|++.++|+|.+++.|+.|++++..++
T Consensus        92 ~~l~~~np~~~v~~~~~~~~~~--~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~g~v~~~~p~  167 (249)
T 1jw9_B           92 DALTRINPHIAITPVNALLDDA--ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQ  167 (249)
T ss_dssp             HHHHHHCTTSEEEEECSCCCHH--HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEECCC
T ss_pred             HHHHHHCCCcEEEEEeccCCHh--HHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeeccceEEEEEEeCC
Confidence            9999999999988866432210  113456789999999999999999999999999999999999999999887543

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.5e-31  Score=290.95  Aligned_cols=156  Identities=22%  Similarity=0.326  Sum_probs=143.6

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCC-----CcEEEEeCCcccccCCCccccccccccCcchHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESKAK   76 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~   76 (456)
                      |+||+++||.++|++|++++|+|||+||+||++++||+++||     |+|+|+|.|.|+.+||+|||+++.+|||++||+
T Consensus       408 y~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~  487 (1015)
T 3cmm_A          408 YDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSE  487 (1015)
T ss_dssp             THHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHH
T ss_pred             hhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHH
Confidence            899999999999999999999999999999999999999999     999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC--EEEEEecChhhhhc--CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEE
Q 012768           77 SVCAFLQELNDAV--KAKFIEEYPEALIE--MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVR  152 (456)
Q Consensus        77 ~~~~~l~~lnp~v--~v~~~~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~  152 (456)
                      +++++++++||++  +++++......-..  .+.++++++|+||++.|+..++..+++.|+.+++|+|.+++.|+.|++.
T Consensus       488 ~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~~G~v~  567 (1015)
T 3cmm_A          488 VAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQ  567 (1015)
T ss_dssp             HHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCCccccceE
Confidence            9999999999999  99987654322111  1235677899999999999999999999999999999999999999999


Q ss_pred             eeeCC
Q 012768          153 ISVKE  157 (456)
Q Consensus       153 ~~~~~  157 (456)
                      +..++
T Consensus       568 v~~p~  572 (1015)
T 3cmm_A          568 VIIPR  572 (1015)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            88876

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=99.96  E-value=2e-29  Score=252.81  Aligned_cols=152  Identities=20%  Similarity=0.219  Sum_probs=135.4

Q ss_pred             CCccccc---ccCH--HH-HHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcch
Q 012768            1 MSMSTLR---IWGE--QG-QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESK   74 (456)
Q Consensus         1 ~y~RQlr---lwG~--~~-q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~K   74 (456)
                      -||||+.   +||.  ++ |++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++.+|+|++|
T Consensus        94 rY~Rq~~~~~~~g~~~~~~q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~K  173 (353)
T 3h5n_A           94 RYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNK  173 (353)
T ss_dssp             TTHHHHHHHHHTTCCHHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBH
T ss_pred             HhhhhhhhhhccCCChHHHHHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChH
Confidence            3999975   5874  56 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChH-HHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768           75 AKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEE-KMIKLDRICREANVMLIFARSYGLTGFVRI  153 (456)
Q Consensus        75 a~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~-~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~  153 (456)
                      |++++++|+++||+++++.+......... ..+ ++++|+||+|.++.. .+..+|++|+++++|+|.+++.|..|++..
T Consensus       174 a~~~~~~l~~~np~v~v~~~~~~i~~~~~-~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g~~g~~g~  251 (353)
T 3h5n_A          174 TEVIKRELLKRNSEISVSEIALNINDYTD-LHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGP  251 (353)
T ss_dssp             HHHHHHHHHHHCTTSEEEEEECCCCSGGG-GGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEeecccCchhh-hhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeCCEEEEEE
Confidence            99999999999999999987764322110 123 889999999988888 899999999999999999999999998754


Q ss_pred             e
Q 012768          154 S  154 (456)
Q Consensus       154 ~  154 (456)
                      .
T Consensus       252 ~  252 (353)
T 3h5n_A          252 L  252 (353)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=99.96  E-value=3e-29  Score=247.33  Aligned_cols=203  Identities=14%  Similarity=0.083  Sum_probs=155.4

Q ss_pred             cccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH
Q 012768            5 TLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE   84 (456)
Q Consensus         5 QlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~   84 (456)
                      ..|+|+..++++|++++|+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++|||+++.+|+|++||++++++|++
T Consensus        20 ~wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~   99 (340)
T 3rui_A           20 KWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKR   99 (340)
T ss_dssp             HHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHH
T ss_pred             HHhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCEEEEEecCh------------hhhhcC-CcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeE
Q 012768           85 LNDAVKAKFIEEYP------------EALIEM-NPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFV  151 (456)
Q Consensus        85 lnp~v~v~~~~~~~------------~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v  151 (456)
                      +||+++++.+....            ..+... ..++++++|+||.|.++.+.+..+|++|+.+++|+|.++ .|+.|++
T Consensus       100 inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~G~~G~l  178 (340)
T 3rui_A          100 IFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYL  178 (340)
T ss_dssp             HCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-ECSSEEE
T ss_pred             hCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-ecceEEE
Confidence            99999999876421            011111 145678999999999999999999999999999999975 9999999


Q ss_pred             EeeeCCceeEecCCCCCCCCcccCCCCchhhhhhhcc-cC--CCCCCcccCCCcHHHHHHHHHHHHHH
Q 012768          152 RISVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETF-DL--NVPDPVAHKHTPYVVILIKMSEEWTN  216 (456)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~-d~--~~~~~~~~~~~P~~v~l~~~~~~~~~  216 (456)
                      .+..+..+  ...|.   ..-|+.|-+|....  ++. +.  +.. -...+.++.++..+++++.+|.
T Consensus       179 ~v~~g~~~--~~~~~---~~~Cy~C~~~~~p~--~~~~~~t~~~~-c~v~~p~vg~igs~qA~E~lk~  238 (340)
T 3rui_A          179 VMRHGNRD--EQSSK---QLGCYFCHDVVAPT--DSLTDRTLDQM-STVTRPGVAMMASSLAVELMTS  238 (340)
T ss_dssp             EEECCCCC--SSCCC---CBCCGGGGSSSCCC--CCTTTCCCGGG-GGCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccc--cCCCC---CCCeeeeCCCCCCc--ccccccccCCC-cceecchHHHHHHHHHHHHHHH
Confidence            88653211  11111   12244554332211  110 00  000 1145566677777888877665

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=99.95  E-value=1.7e-28  Score=256.77  Aligned_cols=208  Identities=13%  Similarity=0.047  Sum_probs=155.1

Q ss_pred             Ccccccc-------cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcch
Q 012768            2 SMSTLRI-------WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESK   74 (456)
Q Consensus         2 y~RQlrl-------wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~K   74 (456)
                      |+||++|       ||..||++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|+|++|
T Consensus       303 ~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~K  382 (598)
T 3vh1_A          303 QSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPK  382 (598)
T ss_dssp             HHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBH
T ss_pred             HHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHH
Confidence            5677775       677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEEecCh------------hhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEE
Q 012768           75 AKSVCAFLQELNDAVKAKFIEEYP------------EALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIF  141 (456)
Q Consensus        75 a~~~~~~l~~lnp~v~v~~~~~~~------------~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~  141 (456)
                      |++++++|+++||+++++.+....            ..+...+ .++++++|+||+|.++.+.|..++++|+.+++|+|.
T Consensus       383 Aeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~plI~  462 (598)
T 3vh1_A          383 AELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVIN  462 (598)
T ss_dssp             HHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCCEEE
Confidence            999999999999999999876431            0111112 356778999999999999999999999999999998


Q ss_pred             EeeccceeeEEeeeCCceeEecCCCCCCCCcccCCCCchhhhhhhcccCCC-CCCcccCCCcHHHHHHHHHHHHHH
Q 012768          142 ARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNV-PDPVAHKHTPYVVILIKMSEEWTN  216 (456)
Q Consensus       142 ~~~~G~~G~v~~~~~~~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~-~~~~~~~~~P~~v~l~~~~~~~~~  216 (456)
                      + +.|+.|++.+..+..+.   .+...  ..|+.|-+|....-. .-|... ..-...+.++.++..+++++.++.
T Consensus       463 a-a~G~~Gqv~v~~g~~p~---~~~~~--~~Cy~Cl~~~~p~~~-~~~~tld~~C~Vl~p~vgvigslqA~Ealk~  531 (598)
T 3vh1_A          463 A-ALGFDSYLVMRHGNRDE---QSSKQ--LGCYFCHDVVAPTDS-LTDRTLDQMCTVTRPGVAMMASSLAVELMTS  531 (598)
T ss_dssp             E-EECSSEEEEEEEC-----------C--BCCTTTSCSSCSSSC-TTTTTTTBSCCCSCTHHHHHHHHHHHHHHHH
T ss_pred             E-EECCccEEEEEccCCCc---cCCCC--CCceeecCccCCCcc-ccccccCCCCCccCcHHHHHHHHHHHHHHHH
Confidence            6 78999999876432110   00111  124444433221110 001000 000134566677777788777665

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=99.95  E-value=2.6e-28  Score=255.38  Aligned_cols=201  Identities=14%  Similarity=0.084  Sum_probs=154.0

Q ss_pred             cccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC
Q 012768            7 RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN   86 (456)
Q Consensus         7 rlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln   86 (456)
                      |+|+..|+++|++++|+|||+||+||++|++|+++|||+|+|+|+|.|+.+||+||++++.+|+|++||++++++|+++|
T Consensus       314 Rllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN  393 (615)
T 4gsl_A          314 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF  393 (615)
T ss_dssp             HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             hhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEecCh------------hhhhcC-CcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEe
Q 012768           87 DAVKAKFIEEYP------------EALIEM-NPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI  153 (456)
Q Consensus        87 p~v~v~~~~~~~------------~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~  153 (456)
                      |+|+++.+....            ..+... ..++++++|+||+|.++.+.+..++++|+.+++|+|.++ .|+.|++.+
T Consensus       394 P~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa-lG~~Gql~v  472 (615)
T 4gsl_A          394 PLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVM  472 (615)
T ss_dssp             TTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE-ECSSEEEEE
T ss_pred             CCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE-ccceeEEEE
Confidence            999999876421            111111 135678899999999999999999999999999999975 999999988


Q ss_pred             eeCCceeEecCCCCCCCCcccCCCCchhhhhhhcc-c--CCCCCCcccCCCcHHHHHHHHHHHHHH
Q 012768          154 SVKEHTVVESKPDHFLDDLRLNNPWPELRKFAETF-D--LNVPDPVAHKHTPYVVILIKMSEEWTN  216 (456)
Q Consensus       154 ~~~~~~~~~~~~~~~~~dlrl~~p~p~l~~~~~~~-d--~~~~~~~~~~~~P~~v~l~~~~~~~~~  216 (456)
                      ..+..  ....+.   ..-|+.|-+|....  ++. |  .+..- ...+.++.++..+++++.++.
T Consensus       473 ~~g~~--~~~~~~---~~~CY~Cl~~~~P~--~~~~~rtl~~~C-~Vl~P~vgiigs~qA~EaLk~  530 (615)
T 4gsl_A          473 RHGNR--DEQSSK---QLGCYFCHDVVAPT--DSLTDRTLDQMC-TVTRPGVAMMASSLAVELMTS  530 (615)
T ss_dssp             ECCC--------C---CCCCTTTSCSSCTT--SCTTTTTTTCTT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred             eeccc--ccCCCC---CCCceeeCCCCCCc--ccccccccccCc-ceecchHHHHHHHHHHHHHHH
Confidence            65321  111111   12245554332211  110 1  01111 145666677777888777664

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.54  E-value=0.00022  Score=66.11  Aligned_cols=96  Identities=13%  Similarity=0.180  Sum_probs=65.7

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .|++.+|+|||.|.+|...++.|..+|. .+++++++.-.                  .   + +.+.+ ...++  .+.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~------------------~---l-~~l~~-~~~i~--~i~   81 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSA------------------E---I-NEWEA-KGQLR--VKR   81 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCH------------------H---H-HHHHH-TTSCE--EEC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCH------------------H---H-HHHHH-cCCcE--EEE
Confidence            5789999999999999999999999997 69999864210                  0   1 12222 12343  222


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS  144 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~  144 (456)
                      ..   +   .++.+.++|+||+++++...-..+...|+ .++|+-.++.
T Consensus        82 ~~---~---~~~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~VNvvD~  123 (223)
T 3dfz_A           82 KK---V---GEEDLLNVFFIVVATNDQAVNKFVKQHIK-NDQLVNMASS  123 (223)
T ss_dssp             SC---C---CGGGSSSCSEEEECCCCTHHHHHHHHHSC-TTCEEEC---
T ss_pred             CC---C---CHhHhCCCCEEEECCCCHHHHHHHHHHHh-CCCEEEEeCC
Confidence            21   1   23456789999988877777788888898 8998655543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.40  E-value=0.00045  Score=59.90  Aligned_cols=103  Identities=18%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             HHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEE
Q 012768           14 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF   93 (456)
Q Consensus        14 q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~   93 (456)
                      -+++.+.+|+|+|+|.+|..+++.|...|. .++++|.+.-....+...                        ..+.+..
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~------------------------~g~~~~~   68 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSE------------------------FSGFTVV   68 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTT------------------------CCSEEEE
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhc------------------------CCCcEEE
Confidence            356778899999999999999999999997 799998654222211100                        0111110


Q ss_pred             Eec-ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH-cCCeEEEEee
Q 012768           94 IEE-YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE-ANVMLIFARS  144 (456)
Q Consensus        94 ~~~-~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~-~~ip~i~~~~  144 (456)
                      .+. .+..+..   ..+.++|+||.+..+......+...++. .+...+.+.+
T Consensus        69 ~d~~~~~~l~~---~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           69 GDAAEFETLKE---CGMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             SCTTSHHHHHT---TTGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             ecCCCHHHHHH---cCcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            000 1111110   1145789999988776666666677776 5555454443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.27  E-value=0.00099  Score=56.50  Aligned_cols=97  Identities=14%  Similarity=0.164  Sum_probs=60.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +...+|+|+|+|.+|..+++.|...|. .++++|.+.                   .++    +.+.+.  .+.+...+.
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~-------------------~~~----~~~~~~--~~~~~~gd~   57 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK-------------------EKI----ELLEDE--GFDAVIADP   57 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHH----HHHHHT--TCEEEECCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH-------------------HHH----HHHHHC--CCcEEECCC
Confidence            345789999999999999999999997 688998532                   122    222222  233222111


Q ss_pred             -ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           97 -YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        97 -~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                       +++.+..   ..+.++|+||.+..+......+...+++.+.+.|.+
T Consensus        58 ~~~~~l~~---~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           58 TDESFYRS---LDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             TCHHHHHH---SCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEE
T ss_pred             CCHHHHHh---CCcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEE
Confidence             1111111   124579999988877666666777777776554544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.25  E-value=0.0012  Score=55.51  Aligned_cols=37  Identities=16%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .++...+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus         2 ~~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~   38 (144)
T 2hmt_A            2 GRIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDIN   38 (144)
T ss_dssp             ----CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESC
T ss_pred             CCCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34667889999999999999999999996 58888854

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.19  E-value=0.00055  Score=65.85  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||+|..++..|...|++++++++.+                   ..|++.+++.+....|.+++...+.
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~i~~~~~  185 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVDA  185 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS-------------------HHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEcCH
Confidence            568899999999999999999999999999998643                   2488888888888887777665431


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      .  .+    .+.+.++|+||.|+.
T Consensus       186 ~--~l----~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          186 R--GI----EDVIAAADGVVNATP  203 (283)
T ss_dssp             T--TH----HHHHHHSSEEEECSS
T ss_pred             H--HH----HHHHhcCCEEEECCC
Confidence            1  11    122446899997763

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.12  E-value=0.002  Score=52.31  Aligned_cols=93  Identities=16%  Similarity=0.161  Sum_probs=61.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      ..+|+|+|+|++|..+++.|...|..+++++|.+.                   .|.+.    +.  .+.+.....+...
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~-------------------~~~~~----~~--~~~~~~~~~d~~~   59 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL-------------------AALAV----LN--RMGVATKQVDAKD   59 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH-------------------HHHHH----HH--TTTCEEEECCTTC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH-------------------HHHHH----HH--hCCCcEEEecCCC
Confidence            45899999999999999999999977899987431                   12222    11  3344443322111


Q ss_pred             -hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEE
Q 012768           99 -EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIF  141 (456)
Q Consensus        99 -~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~  141 (456)
                       ..+    .+.+.++|+||.+.. ......+.+.|.+.+++.+.
T Consensus        60 ~~~~----~~~~~~~d~vi~~~~-~~~~~~~~~~~~~~g~~~~~   98 (118)
T 3ic5_A           60 EAGL----AKALGGFDAVISAAP-FFLTPIIAKAAKAAGAHYFD   98 (118)
T ss_dssp             HHHH----HHHTTTCSEEEECSC-GGGHHHHHHHHHHTTCEEEC
T ss_pred             HHHH----HHHHcCCCEEEECCC-chhhHHHHHHHHHhCCCEEE
Confidence             111    234568999998874 34456778888999988764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.09  E-value=0.0014  Score=54.91  Aligned_cols=91  Identities=14%  Similarity=0.027  Sum_probs=54.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-Ch
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-YP   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~~   98 (456)
                      .+|+|+|+|.+|..+++.|...|. +++++|.+.                   .++    +.+.+-. .+.+...+. .+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~-------------------~~~----~~~~~~~-~~~~~~~d~~~~   59 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DIC----KKASAEI-DALVINGDCTKI   59 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHH----HHHHHHC-SSEEEESCTTSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHH----HHHHHhc-CcEEEEcCCCCH
Confidence            589999999999999999999995 688888432                   122    1222211 232211111 11


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCe
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM  138 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip  138 (456)
                      ..+.   ...+.++|+||.+..+......+...++..+..
T Consensus        60 ~~l~---~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~   96 (140)
T 1lss_A           60 KTLE---DAGIEDADMYIAVTGKEEVNLMSSLLAKSYGIN   96 (140)
T ss_dssp             HHHH---HTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHH---HcCcccCCEEEEeeCCchHHHHHHHHHHHcCCC
Confidence            1111   122557999998876655555566667666543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.73  E-value=0.0026  Score=58.30  Aligned_cols=95  Identities=9%  Similarity=0.058  Sum_probs=58.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      +|+|+|+|.+|..+++.|...|. .++++|.+.                   .+++    .+.+. ..+.+  +..+...
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~----~l~~~-~~~~~--i~gd~~~   54 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDR-------------------ELCE----EFAKK-LKATI--IHGDGSH   54 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHH----HHHHH-SSSEE--EESCTTS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHH----HHHHH-cCCeE--EEcCCCC
Confidence            79999999999999999999997 588998432                   1222    22221 12332  2222211


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH-cCCeEEEE
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE-ANVMLIFA  142 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~-~~ip~i~~  142 (456)
                      ........+.++|+||++..+......+...+++ ++.+-+.+
T Consensus        55 ~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           55 KEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             HHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             HHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            0000111356899999888776666667777776 45554444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.73  E-value=0.0045  Score=53.28  Aligned_cols=99  Identities=11%  Similarity=0.029  Sum_probs=60.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~   96 (456)
                      .+.+|+|+|+|.+|..+++.|...|. .++++|.+.-                  .++    +.+.+. ...+.+..-+.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~------------------~~~----~~~~~~~~~~~~~i~gd~   58 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE------------------DDI----KQLEQRLGDNADVIPGDS   58 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH------------------HHH----HHHHHHHCTTCEEEESCT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCh------------------HHH----HHHHHhhcCCCeEEEcCC
Confidence            46789999999999999999999996 5999985420                  012    222222 23444332111


Q ss_pred             C-hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CCeEEEE
Q 012768           97 Y-PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFA  142 (456)
Q Consensus        97 ~-~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~  142 (456)
                      . ++.+.   ...+.++|+||++..+......+...+++. +.+.|.+
T Consensus        59 ~~~~~l~---~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           59 NDSSVLK---KAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             TSHHHHH---HHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CCHHHHH---HcChhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            1 11111   112568999999887766666777778776 4333433

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.63  E-value=0.0028  Score=61.72  Aligned_cols=83  Identities=12%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||+|..++..|+..|++++++++.+.-                -..|++.+++.+.+..+ +.+.....
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~----------------~~~~a~~la~~~~~~~~-~~~~~~~~  214 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDD----------------FYANAEKTVEKINSKTD-CKAQLFDI  214 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST----------------THHHHHHHHHHHHHHSS-CEEEEEET
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCc----------------hHHHHHHHHHHhhhhcC-CceEEecc
Confidence            56789999999999999999999999999999974310                02478888887776654 45554432


Q ss_pred             Ch-hhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YP-EALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~-~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      .. ..+    .+.+.++|+||.|+.
T Consensus       215 ~~~~~l----~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          215 EDHEQL----RKEIAESVIFTNATG  235 (315)
T ss_dssp             TCHHHH----HHHHHTCSEEEECSS
T ss_pred             chHHHH----HhhhcCCCEEEECcc
Confidence            11 111    122447889987763

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.62  E-value=0.0068  Score=62.21  Aligned_cols=95  Identities=9%  Similarity=0.117  Sum_probs=66.5

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh--CCCCEEEE
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL--NDAVKAKF   93 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l--np~v~v~~   93 (456)
                      .|++.+|+|+|.|.+|...++.|...|. +++++|++..                         ..+.++  ...+++. 
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~-------------------------~~~~~l~~~~~i~~~-   61 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFI-------------------------PQFTVWANEGMLTLV-   61 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCC-------------------------HHHHHHHTTTSCEEE-
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCC-------------------------HHHHHHHhcCCEEEE-
Confidence            3678999999999999999999999996 6999986421                         111222  1234432 


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS  144 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~  144 (456)
                       ...   +   ..+.+.++|+||.+.+.......+...|++.++|+-.++-
T Consensus        62 -~~~---~---~~~~l~~~~lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~  105 (457)
T 1pjq_A           62 -EGP---F---DETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDA  105 (457)
T ss_dssp             -ESS---C---CGGGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             -ECC---C---CccccCCccEEEEcCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence             221   1   2234668999998887766677889999999999544443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.53  E-value=0.0084  Score=53.09  Aligned_cols=92  Identities=14%  Similarity=0.007  Sum_probs=56.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +.+.+|+|+|+|.+|..+++.|... |. .++++|.+.                   .|+    +.+.+.  .+.+..-+
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~-------------------~~~----~~~~~~--g~~~~~gd   90 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE-------------------EAA----QQHRSE--GRNVISGD   90 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH-------------------HHH----HHHHHT--TCCEEECC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH-------------------HHH----HHHHHC--CCCEEEcC
Confidence            4467999999999999999999999 97 588888433                   122    223333  23322111


Q ss_pred             c-ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012768           96 E-YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN  136 (456)
Q Consensus        96 ~-~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~  136 (456)
                      . +++.+.+  ..-+.++|+||.+..+......+...++..+
T Consensus        91 ~~~~~~l~~--~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~  130 (183)
T 3c85_A           91 ATDPDFWER--ILDTGHVKLVLLAMPHHQGNQTALEQLQRRN  130 (183)
T ss_dssp             TTCHHHHHT--BCSCCCCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHh--ccCCCCCCEEEEeCCChHHHHHHHHHHHHHC
Confidence            1 1111111  1025689999988776555555555666655

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.43  E-value=0.0061  Score=58.08  Aligned_cols=114  Identities=12%  Similarity=0.272  Sum_probs=65.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccccc--CCCccccccccccCcchHHHHHHHHHH-hCCC----
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVG--DLGNNFMLDESCVGESKAKSVCAFLQE-LNDA----   88 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~--nl~r~f~~~~~dvG~~Ka~~~~~~l~~-lnp~----   88 (456)
                      .|++.+|+|||+|.+|...++.|...|. ++|++|++.-..-  .+. . +...  -+. ++.  ....+. +|+.    
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~l~~~~~-~-l~~~--~~~-~~~--~~~~~~~~~~~~~~~   81 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFG-K-FIQN--KDQ-PDY--REDAKRFINPNWDPT   81 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHC-G-GGC----------------CEEECTTCCTT
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcchhHHHH-H-HHhc--ccc-ccc--cchhhcccccccccc
Confidence            4678999999999999999999999996 5999997542110  000 0 0000  000 000  000000 0110    


Q ss_pred             -CEE-EEEecChhhhhcCCcCCCC------CCcEEEEcCCChHHHHHHHHHHHHc---CCeEEEEe
Q 012768           89 -VKA-KFIEEYPEALIEMNPPFFS------QFTLVVATQLGEEKMIKLDRICREA---NVMLIFAR  143 (456)
Q Consensus        89 -v~v-~~~~~~~~~~~~~~~~~~~------~~dvVi~~~~~~~~~~~l~~~~~~~---~ip~i~~~  143 (456)
                       -.+ ..+...   +   ..+.+.      ++|+||++++....-..+...|++.   ++|+-.++
T Consensus        82 ~g~i~~~i~~~---~---~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd  141 (274)
T 1kyq_A           82 KNEIYEYIRSD---F---KDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVNVAD  141 (274)
T ss_dssp             SCCCSEEECSS---C---CGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETT
T ss_pred             cCCeeEEEcCC---C---CHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECC
Confidence             112 222221   1   122344      8999999888877788899999998   88854443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.43  E-value=0.009  Score=50.61  Aligned_cols=88  Identities=18%  Similarity=0.170  Sum_probs=54.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-C
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-Y   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~   97 (456)
                      +.+|+|+|+|.+|..+++.|...|. .++++|.+.                   .++    +.+++  ..+.+..-+. .
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~----~~~~~--~g~~~i~gd~~~   60 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR-------------------TRV----DELRE--RGVRAVLGNAAN   60 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHH----HHHHH--TTCEEEESCTTS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHH----HHHHH--cCCCEEECCCCC
Confidence            4689999999999999999999997 699998543                   122    22333  2343322111 1


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA  135 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~  135 (456)
                      ++.+..   .-+.++|+||++..+......+...+++.
T Consensus        61 ~~~l~~---a~i~~ad~vi~~~~~~~~n~~~~~~a~~~   95 (140)
T 3fwz_A           61 EEIMQL---AHLECAKWLILTIPNGYEAGEIVASARAK   95 (140)
T ss_dssp             HHHHHH---TTGGGCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHh---cCcccCCEEEEECCChHHHHHHHHHHHHH
Confidence            111111   12457899998877655544455556654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.43  E-value=0.0045  Score=60.19  Aligned_cols=84  Identities=12%  Similarity=0.103  Sum_probs=55.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||.|..++..|...|++++++++.+.-                ...|++.+++.+....+ ..+.....
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~----------------~~~~a~~la~~~~~~~~-~~v~~~~~  208 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDD----------------FFEKAVAFAKRVNENTD-CVVTVTDL  208 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST----------------HHHHHHHHHHHHHHHSS-CEEEEEET
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCc----------------hHHHHHHHHHHhhhccC-cceEEech
Confidence            56789999999999999999999999999999864310                02477877777776543 34443332


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      .....   ..+.+.++|+||.|+.
T Consensus       209 ~~l~~---~~~~l~~~DiIINaTp  229 (312)
T 3t4e_A          209 ADQHA---FTEALASADILTNGTK  229 (312)
T ss_dssp             TCHHH---HHHHHHHCSEEEECSS
T ss_pred             Hhhhh---hHhhccCceEEEECCc
Confidence            11000   0112446888887653

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.29  E-value=0.0097  Score=59.09  Aligned_cols=92  Identities=15%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ++.||+|+|+|.+|..+++.|...  ..+++.|.+.                          +.+..+.+.+.....+..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~~--------------------------~~~~~~~~~~~~~~~d~~   66 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNN--------------------------ENLEKVKEFATPLKVDAS   66 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCH--------------------------HHHHHHTTTSEEEECCTT
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcCH--------------------------HHHHHHhccCCcEEEecC
Confidence            456799999999999999998653  4677766221                          233344444443222211


Q ss_pred             -hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           98 -PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        98 -~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                       .+.+    .+.++++|+||.+..+. .-..+.+.|.+.++.+++.
T Consensus        67 d~~~l----~~~~~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~  107 (365)
T 3abi_A           67 NFDKL----VEVMKEFELVIGALPGF-LGFKSIKAAIKSKVDMVDV  107 (365)
T ss_dssp             CHHHH----HHHHTTCSEEEECCCGG-GHHHHHHHHHHHTCEEEEC
T ss_pred             CHHHH----HHHHhCCCEEEEecCCc-ccchHHHHHHhcCcceEee
Confidence             1111    23467899999887553 4567889999999998864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.21  E-value=0.007  Score=55.93  Aligned_cols=95  Identities=12%  Similarity=0.134  Sum_probs=59.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      .+.+|+|+|+|.+|..+++.|...|.  ++++|.+.                   .++    +.+.   +.+.+  +..+
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~-------------------~~~----~~~~---~~~~~--i~gd   57 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRK----KVLR---SGANF--VHGD   57 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGG-------------------GHH----HHHH---TTCEE--EESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCH-------------------HHH----HHHh---cCCeE--EEcC
Confidence            35689999999999999999999987  88887432                   111    2222   34443  2222


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCe-EEEE
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM-LIFA  142 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip-~i~~  142 (456)
                      ..........-+.++|.||++..+......+...+++.+.. .|.+
T Consensus        58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           58 PTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             TTCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CCCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            21110001123668999998887766666777788887653 3444

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.21  E-value=0.018  Score=58.88  Aligned_cols=99  Identities=16%  Similarity=0.261  Sum_probs=63.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc-CC--CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG-GI--GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~-Gv--~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +.+|+|+|+|++|+.++..|++. ++  ..|+++|.+...                +..    .+.+     .++.....
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~----------------~~~----~~~~-----g~~~~~~~   67 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK----------------VDV----AQQY-----GVSFKLQQ   67 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS----------------CCH----HHHH-----TCEEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh----------------hhH----Hhhc-----CCceeEEe
Confidence            57899999999999999999985 56  589999855431                100    1111     23444333


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEe
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR  143 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~  143 (456)
                      .....+.+.-..++++.|+||.+..+ .....+-+.|.+.|+-+++..
T Consensus        68 Vdadnv~~~l~aLl~~~DvVIN~s~~-~~~l~Im~acleaGv~YlDTa  114 (480)
T 2ph5_A           68 ITPQNYLEVIGSTLEENDFLIDVSIG-ISSLALIILCNQKGALYINAA  114 (480)
T ss_dssp             CCTTTHHHHTGGGCCTTCEEEECCSS-SCHHHHHHHHHHHTCEEEESS
T ss_pred             ccchhHHHHHHHHhcCCCEEEECCcc-ccCHHHHHHHHHcCCCEEECC
Confidence            22222211122345556999976544 345678889999999877654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.06  E-value=0.014  Score=57.02  Aligned_cols=36  Identities=17%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +++..+|.|+|+|.+|+.++..|+..|.+.++++|-
T Consensus         4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di   39 (324)
T 3gvi_A            4 SMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDI   39 (324)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            356789999999999999999999999888999983

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.00  E-value=0.0096  Score=56.75  Aligned_cols=74  Identities=22%  Similarity=0.266  Sum_probs=51.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||.|..++..|...|++++++++.+.                   .|++.+++.+..    ..+.....
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~-------------------~~a~~la~~~~~----~~~~~~~~  174 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM-------------------AKALALRNELDH----SRLRISRY  174 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH-------------------HHHHHHHHHHCC----TTEEEECS
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHhcc----CCeeEeeH
Confidence            4678999999999999999999999999999986321                   367766665543    22333321


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                        +++.    .  .++|+||.|+..
T Consensus       175 --~~l~----~--~~~DivInaTp~  191 (272)
T 3pwz_A          175 --EALE----G--QSFDIVVNATSA  191 (272)
T ss_dssp             --GGGT----T--CCCSEEEECSSG
T ss_pred             --HHhc----c--cCCCEEEECCCC
Confidence              1221    1  579999987743

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.95  E-value=0.014  Score=55.88  Aligned_cols=74  Identities=22%  Similarity=0.293  Sum_probs=52.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +.+++|+|+|+||.|..++..|...|+.++++++.+                   ..|++.+++.+....   .+.....
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~-------------------~~~a~~la~~~~~~~---~~~~~~~  181 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT-------------------FAKAEQLAELVAAYG---EVKAQAF  181 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEEG
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC-------------------HHHHHHHHHHhhccC---CeeEeeH
Confidence            467899999999999999999999999999998632                   236777777665542   2333221


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                        +++       -.++|+||.|+..
T Consensus       182 --~~l-------~~~aDiIInaTp~  197 (281)
T 3o8q_A          182 --EQL-------KQSYDVIINSTSA  197 (281)
T ss_dssp             --GGC-------CSCEEEEEECSCC
T ss_pred             --HHh-------cCCCCEEEEcCcC
Confidence              111       1579999987643

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.77  E-value=0.073  Score=48.71  Aligned_cols=39  Identities=13%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             HHHHHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           12 QGQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+..|++.+|+|.|+ |++|.++++.|+..|. ++++++.
T Consensus        14 ~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R   53 (236)
T 3e8x_A           14 RENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVR   53 (236)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEEC
Confidence            3456799999999996 8999999999999996 6777763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.65  E-value=0.0081  Score=61.70  Aligned_cols=98  Identities=17%  Similarity=0.152  Sum_probs=60.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      .||+|+|+|-+|..+|+.|...|. .++++|.|.-                   ++    +.+.+.. ++.  ++..+..
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~-------------------~~----~~~~~~~-~~~--~i~Gd~~   56 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENN-DITIVDKDGD-------------------RL----RELQDKY-DLR--VVNGHAS   56 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHH-------------------HH----HHHHHHS-SCE--EEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------HH----HHHHHhc-CcE--EEEEcCC
Confidence            479999999999999999998885 5999995541                   11    2222211 233  3333322


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CCeEEEEee
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARS  144 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~  144 (456)
                      ...-....-++++|++|+++.+.+.-......+++. +.+-+.+..
T Consensus        57 ~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~iar~  102 (461)
T 4g65_A           57 HPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARI  102 (461)
T ss_dssp             CHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHCCSSEEEEC
T ss_pred             CHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcCCccceeEe
Confidence            110001123568999998887766666666677764 666555543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.59  E-value=0.024  Score=55.25  Aligned_cols=75  Identities=12%  Similarity=0.185  Sum_probs=51.0

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh----CCCCEEE
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL----NDAVKAK   92 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l----np~v~v~   92 (456)
                      ++..+|.|+|+|.+|+.++..|+..|++.++++|-+.                   .|++..+..|...    +..+++.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~-------------------~~~~g~a~dL~~~~~~~~~~~~v~   63 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ-------------------GMPNGKALDLLQTCPIEGVDFKVR   63 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCCcEEE
Confidence            4567999999999999999999999988899998432                   2444444444442    2244444


Q ss_pred             EEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           93 FIEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      ...         +.+.++++|+||.+.
T Consensus        64 ~t~---------d~~a~~~aDvVIi~a   81 (321)
T 3p7m_A           64 GTN---------DYKDLENSDVVIVTA   81 (321)
T ss_dssp             EES---------CGGGGTTCSEEEECC
T ss_pred             EcC---------CHHHHCCCCEEEEcC
Confidence            221         223467899999764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.55  E-value=0.026  Score=53.73  Aligned_cols=35  Identities=17%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++..+|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            567899999999999999999999998 89998743

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.48  E-value=0.019  Score=54.83  Aligned_cols=112  Identities=11%  Similarity=0.020  Sum_probs=64.8

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh--CCCCEEEEE
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL--NDAVKAKFI   94 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l--np~v~v~~~   94 (456)
                      +++++|+|+|+||.|..++..|...|++++++++.+.-....+...+       +..-.    +.+.+.  ..++-|++.
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~-------~~~~~----~~~~~~~~~aDiVInaT  183 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI-------NKINL----SHAESHLDEFDIIINTT  183 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCC-------EEECH----HHHHHTGGGCSEEEECC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhc-------ccccH----hhHHHHhcCCCEEEECc
Confidence            67899999999999999999999999999999987764444444321       11011    112221  234444332


Q ss_pred             ecC--hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           95 EEY--PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        95 ~~~--~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      ..-  +..-.....+.++.-.+|++...+... ..+.+.+++.|++.+
T Consensus       184 p~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~-T~ll~~A~~~G~~~~  230 (277)
T 3don_A          184 PAGMNGNTDSVISLNRLASHTLVSDIVYNPYK-TPILIEAEQRGNPIY  230 (277)
T ss_dssp             C-------CCSSCCTTCCSSCEEEESCCSSSS-CHHHHHHHHTTCCEE
T ss_pred             cCCCCCCCcCCCCHHHcCCCCEEEEecCCCCC-CHHHHHHHHCcCEEe
Confidence            210  100000123445566677776654322 245667788887643

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.36  E-value=0.058  Score=52.22  Aligned_cols=71  Identities=17%  Similarity=0.197  Sum_probs=48.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH----hCCCCEEEEEec
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE----LNDAVKAKFIEE   96 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~----lnp~v~v~~~~~   96 (456)
                      +|.|+|+|.+|+.++..|+..|++.++|+|-+                   ..|++..+..|..    ++..++++....
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~~i~~t~d   61 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIART-------------------PGKPQGEALDLAHAAAELGVDIRISGSNS   61 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-------------------TTHHHHHHHHHHHHHHHHTCCCCEEEESC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC-------------------hhhHHHHHHHHHHhhhhcCCCeEEEECCC
Confidence            68999999999999999999999669999843                   1234333333433    445566554221


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                               .+.+++.|+||.+.
T Consensus        62 ---------~~a~~~aD~Vi~~a   75 (308)
T 2d4a_B           62 ---------YEDMRGSDIVLVTA   75 (308)
T ss_dssp             ---------GGGGTTCSEEEECC
T ss_pred             ---------HHHhCCCCEEEEeC
Confidence                     22367899999873

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.33  E-value=0.019  Score=48.66  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +....+|+|+|+|++|..+++.|...|+. ++++|.
T Consensus        18 ~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r   52 (144)
T 3oj0_A           18 KNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGR   52 (144)
T ss_dssp             HHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEES
T ss_pred             hccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcC
Confidence            34478999999999999999999999988 999873

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.28  E-value=0.039  Score=55.60  Aligned_cols=98  Identities=14%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcC-C-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCCEEEEEec
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGG-I-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVKAKFIEE   96 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~G-v-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v~v~~~~~   96 (456)
                      .+|+|+|+|++|..+++.|+..| + ..+++.|.+.                   .|++.+++.+.... +.+.....+.
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~-------------------~~~~~la~~l~~~~~~~~~~~~~D~   62 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTL-------------------SKCQEIAQSIKAKGYGEIDITTVDA   62 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCH-------------------HHHHHHHHHHHHTTCCCCEEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCH-------------------HHHHHHHHHhhhhcCCceEEEEecC
Confidence            48999999999999999999988 3 6888887432                   36666666665432 2343332221


Q ss_pred             C-hhhhhcCCcCCCCC--CcEEEEcCCChHHHHHHHHHHHHcCCeEEE
Q 012768           97 Y-PEALIEMNPPFFSQ--FTLVVATQLGEEKMIKLDRICREANVMLIF  141 (456)
Q Consensus        97 ~-~~~~~~~~~~~~~~--~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~  141 (456)
                      . ...+    .+.+++  .|+||.+..+. ....+.+.|.+.++.+++
T Consensus        63 ~d~~~l----~~~l~~~~~DvVin~ag~~-~~~~v~~a~l~~g~~vvD  105 (405)
T 4ina_A           63 DSIEEL----VALINEVKPQIVLNIALPY-QDLTIMEACLRTGVPYLD  105 (405)
T ss_dssp             TCHHHH----HHHHHHHCCSEEEECSCGG-GHHHHHHHHHHHTCCEEE
T ss_pred             CCHHHH----HHHHHhhCCCEEEECCCcc-cChHHHHHHHHhCCCEEE
Confidence            1 1111    122333  78998776543 345677788888888775

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.26  E-value=0.031  Score=53.28  Aligned_cols=34  Identities=15%  Similarity=0.344  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC--CcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI--GSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv--~~itlvD~   51 (456)
                      +..+|.|||+|..|+.+++.|...|.  .+++++|.
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr   37 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNR   37 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeC
Confidence            35789999999999999999999996  26888873

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.19  E-value=0.12  Score=48.69  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=61.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      +..+|+|.|+|.+|+.+++.|...|. +++.++...-   .                          +.+.+++...+  
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~---~--------------------------~~~~~~~~~~D--   49 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQ---P--------------------------MPAGVQTLIAD--   49 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTS---C--------------------------CCTTCCEEECC--
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc---c--------------------------cccCCceEEcc--
Confidence            35689999999999999999999997 5777764321   1                          11233332211  


Q ss_pred             hhhhhcCCcCCCCC-CcEEEEcC------------CChHHHHHHHHHHHHcCC-eEEEEeeccceee
Q 012768           98 PEALIEMNPPFFSQ-FTLVVATQ------------LGEEKMIKLDRICREANV-MLIFARSYGLTGF  150 (456)
Q Consensus        98 ~~~~~~~~~~~~~~-~dvVi~~~------------~~~~~~~~l~~~~~~~~i-p~i~~~~~G~~G~  150 (456)
                      ..+.. .-.+.+++ +|+||.+.            .+......+.+.|++.++ .+|.+++.+.||.
T Consensus        50 l~d~~-~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~  115 (286)
T 3gpi_A           50 VTRPD-TLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQ  115 (286)
T ss_dssp             TTCGG-GCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCC
T ss_pred             CCChH-HHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcC
Confidence            11100 01223344 78888542            123345667778887774 6888888887773

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.18  E-value=0.046  Score=53.35  Aligned_cols=74  Identities=26%  Similarity=0.183  Sum_probs=52.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC---CCEEEE
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND---AVKAKF   93 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp---~v~v~~   93 (456)
                      ...+|.|+|+|.+|+.+|..|+..|+ +.++|+|-                   ...|++..+..|....|   .+++..
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~-------------------~~~k~~g~a~DL~~~~~~~~~~~i~~   68 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI-------------------FKDKTKGDAIDLEDALPFTSPKKIYS   68 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------CHHHHHHHHHHHHTTGGGSCCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC-------------------ChHHHHHHHhhHhhhhhhcCCcEEEE
Confidence            45689999999999999999999998 58999983                   22466666666665544   333321


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                                .+.+.++++|+||.+..
T Consensus        69 ----------~~~~a~~~aDiVvi~ag   85 (326)
T 3vku_A           69 ----------AEYSDAKDADLVVITAG   85 (326)
T ss_dssp             ----------CCGGGGTTCSEEEECCC
T ss_pred             ----------CcHHHhcCCCEEEECCC
Confidence                      12334778999997753

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.18  E-value=0.04  Score=51.84  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +++ +|+|+|+|+.|..++..|...|+++++++|.+.
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            456 999999999999999999999999999998543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.16  E-value=0.043  Score=55.40  Aligned_cols=96  Identities=17%  Similarity=0.192  Sum_probs=61.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-C
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-Y   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~   97 (456)
                      +.+|+|+|+|.+|..+++.|...|+ .++++|.|.-                   ++    +.+++.  .+.+-.-+. .
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~-------------------~v----~~~~~~--g~~vi~GDat~   57 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPD-------------------HI----ETLRKF--GMKVFYGDATR   57 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHH-------------------HH----HHHHHT--TCCCEESCTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------HH----HHHHhC--CCeEEEcCCCC
Confidence            4689999999999999999999997 5999986541                   22    222222  222211111 1


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCe-EEEEe
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM-LIFAR  143 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip-~i~~~  143 (456)
                      ++.+.   ..-+.++++||++.++......+...+++.+.. -|.+.
T Consensus        58 ~~~L~---~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           58 MDLLE---SAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             HHHHH---HTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHHH---hcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEE
Confidence            11111   112568999999888877777788888887643 34443

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.09  E-value=0.071  Score=51.22  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=48.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH----hCCCCEEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE----LNDAVKAKFIE   95 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~----lnp~v~v~~~~   95 (456)
                      ||.|+|+|++|+.+|-.|+..|. +.+.|+|                   +-+.|++..+.-|..    ++...++....
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~D-------------------i~~~~~~G~a~DL~h~~~~~~~~~~i~~~~   62 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVD-------------------IAEDLAVGEAMDLAHAAAGIDKYPKIVGGA   62 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEEC-------------------SSHHHHHHHHHHHHHHHGGGTCCCEEEEES
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEe-------------------CCCCcchhhhhhhhcccccCCCCCeEecCC
Confidence            79999999999999999998876 7899998                   222355555555555    33344433211


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                               +.+.+++.|+||.+.
T Consensus        63 ---------d~~~~~~aDvVvitA   77 (294)
T 2x0j_A           63 ---------DYSLLKGSEIIVVTA   77 (294)
T ss_dssp             ---------CGGGGTTCSEEEECC
T ss_pred             ---------CHHHhCCCCEEEEec
Confidence                     223467899999764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.04  E-value=0.082  Score=47.95  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .++...+|.|+|+|.+|+.+++.|...|. +++++|.
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~   50 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGS   50 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECT
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            46778899999999999999999999996 6888874

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.00  E-value=0.03  Score=54.48  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=31.0

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      .+++..+|.|+|+|.+|..++..|+..|. ..+.++|-
T Consensus         2 ~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di   39 (317)
T 3d0o_A            2 NKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDL   39 (317)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            34566799999999999999999999887 67999983

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.94  E-value=0.046  Score=53.42  Aligned_cols=72  Identities=24%  Similarity=0.185  Sum_probs=50.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC----CCEEEE
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKF   93 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp----~v~v~~   93 (456)
                      ..+|.|+|+|.+|+.+|..|+..|. +.++++|-+                   ..|++..+.-|+...|    .+++. 
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~v~i~-   64 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN-------------------KEKAMGDVMDLNHGKAFAPQPVKTS-   64 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGSSSCCEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc-------------------hHHHHHHHHHHHhccccccCCeEEE-
Confidence            4689999999999999999999998 589999832                   2466665555665444    33332 


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                       ..        +.+.++++|+||.+.
T Consensus        65 -~~--------~~~a~~~aDvVvi~a   81 (326)
T 3pqe_A           65 -YG--------TYEDCKDADIVCICA   81 (326)
T ss_dssp             -EE--------CGGGGTTCSEEEECC
T ss_pred             -eC--------cHHHhCCCCEEEEec
Confidence             11        223467899999764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.90  E-value=0.036  Score=54.90  Aligned_cols=121  Identities=17%  Similarity=0.254  Sum_probs=68.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIE   95 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~   95 (456)
                      ++..+|.|||+|.+|..+|++|+..|. .++++|.+.-....+...        |-.-+....+.+... .|++-+..+.
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~a~~~DvVi~~vp   90 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE--------GIAGARSIEEFCAKLVKPRVVWLMVP   90 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT--------TCBCCSSHHHHHHHSCSSCEEEECSC
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC--------CCEEeCCHHHHHhcCCCCCEEEEeCC
Confidence            456789999999999999999999995 688998654322211111        111111122223322 2355444433


Q ss_pred             cC-hhhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           96 EY-PEALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        96 ~~-~~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      .. ...+...-...++.-++||.+. ........+.+.+...++.|+.+.+.|
T Consensus        91 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           91 AAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             GGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence            21 1111111123355556777654 444556677778888899998887655

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.89  E-value=0.19  Score=48.71  Aligned_cols=112  Identities=14%  Similarity=0.091  Sum_probs=65.3

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-----CC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-----DA   88 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-----p~   88 (456)
                      ..++..+|+|.| .|.+|+.+++.|...|. +++.+|...-.                  . ......+..+.     +.
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~------------------~-~~~~~~~~~~~~~~~~~~   80 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTG------------------H-QYNLDEVKTLVSTEQWSR   80 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC------------------C-HHHHHHHHHTSCHHHHTT
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCC------------------c-hhhhhhhhhccccccCCc
Confidence            456788999999 58899999999999994 57777632210                  0 01112222221     34


Q ss_pred             CEEEEEecChhhhhcCCcCCCCCCcEEEEcCCC--h---------------HHHHHHHHHHHHcCC-eEEEEeecccee
Q 012768           89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQLG--E---------------EKMIKLDRICREANV-MLIFARSYGLTG  149 (456)
Q Consensus        89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~--~---------------~~~~~l~~~~~~~~i-p~i~~~~~G~~G  149 (456)
                      +++  +..+..+.. .-...++++|+||.+...  .               .....+.+.|++.++ .+|.+++.+.+|
T Consensus        81 ~~~--~~~Dl~d~~-~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg  156 (351)
T 3ruf_A           81 FCF--IEGDIRDLT-TCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYG  156 (351)
T ss_dssp             EEE--EECCTTCHH-HHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGT
T ss_pred             eEE--EEccCCCHH-HHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcC
Confidence            443  332221110 012345689999965432  1               112345677888876 788888887776

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.82  E-value=0.11  Score=50.35  Aligned_cols=45  Identities=9%  Similarity=0.011  Sum_probs=33.0

Q ss_pred             ccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768            8 IWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus         8 lwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|+.+---.-...+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        13 ~~~~~~~~~~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~   57 (317)
T 4ezb_A           13 LGTENLYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLR   57 (317)
T ss_dssp             --CCCHHHHTSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred             cCcccCcccccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            455543212234689999999999999999999996578888844

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.76  E-value=0.072  Score=52.02  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...+|.|+|+|.+|+.+|..|+..|...++++|.+
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            44689999999999999999999999559999843

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.75  E-value=0.075  Score=49.81  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +...+|.|||+|.+|..+++.|...|...++++|
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~   41 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYS   41 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEe
Confidence            4557899999999999999999999976577877

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.67  E-value=0.15  Score=49.16  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      ..+|+|+|+|++|+.++..|+..|. +.++++|.+
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999995 479999843

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.64  E-value=0.18  Score=48.63  Aligned_cols=32  Identities=19%  Similarity=0.440  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      .+|+|+|+|.+|+.++..|+..|. ..++++|.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~   34 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA   34 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcC
Confidence            479999999999999999999997 67999884

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.62  E-value=0.12  Score=45.59  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..+|+|.|+ |++|.++++.|...| .++++++.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~   37 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDS   37 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeCh
Confidence            368999996 899999999999999 5788887653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.54  E-value=0.19  Score=45.03  Aligned_cols=94  Identities=13%  Similarity=0.062  Sum_probs=56.7

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|+|.| .|++|..+++.|+..|. ++++++.+.                          ..+.++.+.+++...  +..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~--------------------------~~~~~~~~~~~~~~~--D~~   52 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA--------------------------GKITQTHKDINILQK--DIF   52 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS--------------------------HHHHHHCSSSEEEEC--CGG
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc--------------------------hhhhhccCCCeEEec--ccc
Confidence            699999 58899999999999994 677776331                          112223355554332  221


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCC--------hHHHHHHHHHHHHcC-CeEEEEeecc
Q 012768          100 ALIEMNPPFFSQFTLVVATQLG--------EEKMIKLDRICREAN-VMLIFARSYG  146 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~--------~~~~~~l~~~~~~~~-ip~i~~~~~G  146 (456)
                      +   ...+.+.++|+||.+...        ......+.+.|++.+ ..+|..++.+
T Consensus        53 d---~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           53 D---LTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             G---CCHHHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             C---hhhhhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecce
Confidence            1   111446788999965422        123355666777764 4566665544

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.50  E-value=0.1  Score=50.54  Aligned_cols=72  Identities=25%  Similarity=0.205  Sum_probs=49.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC----CCEEEE
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKF   93 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp----~v~v~~   93 (456)
                      ..+|.|+|+|.+|+.++..|...|. +.++++|-+                   ..|++..+..|....+    .+++..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~-------------------~~~~~~~~~dl~~~~~~~~~~~~i~~   66 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN-------------------ESKAIGDAMDFNHGKVFAPKPVDIWH   66 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------cchHHHHHhhHHHHhhhcCCCeEEEc
Confidence            3689999999999999999999885 679999832                   1244444444444444    444442


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                        .        ..+.++++|+||.+.
T Consensus        67 --~--------~~~al~~aDvViia~   82 (316)
T 1ldn_A           67 --G--------DYDDCRDADLVVICA   82 (316)
T ss_dssp             --C--------CGGGTTTCSEEEECC
T ss_pred             --C--------cHHHhCCCCEEEEcC
Confidence              1        123477899999874

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.49  E-value=0.24  Score=47.84  Aligned_cols=106  Identities=13%  Similarity=0.229  Sum_probs=60.3

Q ss_pred             HHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEE
Q 012768           15 AALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF   93 (456)
Q Consensus        15 ~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~   93 (456)
                      ..++..+|+|.|+ |.+|..+++.|...|. +++++|...-...   ..                   +..+.....+..
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~---~~-------------------~~~~~~~~~~~~   79 (343)
T 2b69_A           23 MEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFFTGRK---RN-------------------VEHWIGHENFEL   79 (343)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCG---GG-------------------TGGGTTCTTEEE
T ss_pred             cccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCCccch---hh-------------------hhhhccCCceEE
Confidence            4567789999996 8899999999999995 6777764321000   00                   001111112333


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcCCC---------hH--------HHHHHHHHHHHcCCeEEEEeecccee
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQLG---------EE--------KMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~---------~~--------~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      +..+   +.   ...+.++|+||.+...         ..        ....+.+.|.+.++.+|.+++.+.+|
T Consensus        80 ~~~D---~~---~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g  146 (343)
T 2b69_A           80 INHD---VV---EPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG  146 (343)
T ss_dssp             EECC---TT---SCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGB
T ss_pred             EeCc---cC---ChhhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhC
Confidence            3322   11   1235678999954321         11        12345567777788899988887776

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.46  E-value=0.077  Score=51.54  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++..+|.|+|+|.+|+.+|..|+..|.+.++++|.+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            345789999999999999999999999889999843

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.46  E-value=0.14  Score=49.75  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|.|+|+|.+|+.++..|+..|...++++|-
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di   36 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI   36 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            58999999999999999999999955999984

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=94.42  E-value=0.11  Score=50.05  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=28.1

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIG-SITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~   51 (456)
                      +|.|+|+|.+|+.++..|+..|.. .++++|-
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~   33 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence            799999999999999999999974 7999983

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.32  E-value=0.042  Score=53.66  Aligned_cols=89  Identities=10%  Similarity=0.119  Sum_probs=56.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.|.                   .+++     +++  ..+.+  +..++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~-------------------~~~~-----~~~--~~~~~--i~gd~  164 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRKK-----VLR--SGANF--VHGDP  164 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGG-------------------GHHH-----HHH--TTCEE--EESCT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCCh-------------------hhhh-----HHh--CCcEE--EEeCC
Confidence            5689999999999999999999998  88888543                   1222     222  23433  32222


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCC
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANV  137 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~i  137 (456)
                      .+.......-++++|.|+++..+......+...+++.+.
T Consensus       165 ~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~  203 (336)
T 1lnq_A          165 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE  203 (336)
T ss_dssp             TSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHTTCT
T ss_pred             CCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHHHCC
Confidence            111000112356899999887766666666677777765

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=94.27  E-value=0.052  Score=53.11  Aligned_cols=77  Identities=16%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC---CCE
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND---AVK   90 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp---~v~   90 (456)
                      ......+|.|+|+|.+|+.+|..|+..|. ..++|+|-                   ...|++..+.-|....+   ...
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~g~a~DL~~~~~~~~~~~   75 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDV-------------------IEDKLKGEMMDLQHGSLFLKTPK   75 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS-------------------CHHHHHHHHHHHHHTGGGCSCCE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeC-------------------ChHHHHHHHHhhhhhhhccCCCe
Confidence            45667899999999999999999999997 47999983                   23467776666765532   222


Q ss_pred             EEEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           91 AKFIEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      +.. .        .+.+.++++|+||.+.
T Consensus        76 i~~-~--------~d~~~~~~aDiVvi~a   95 (331)
T 4aj2_A           76 IVS-S--------KDYSVTANSKLVIITA   95 (331)
T ss_dssp             EEE-C--------SSGGGGTTEEEEEECC
T ss_pred             EEE-c--------CCHHHhCCCCEEEEcc
Confidence            221 1        1223477999998764

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.25  E-value=0.18  Score=45.33  Aligned_cols=96  Identities=17%  Similarity=0.122  Sum_probs=57.4

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|+|.| .|++|.++++.|...|. ++++++.+.-....+                           +.+++  +..+..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~---------------------------~~~~~--~~~D~~   51 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY---------------------------NNVKA--VHFDVD   51 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC---------------------------TTEEE--EECCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc---------------------------CCceE--EEeccc
Confidence            699999 78899999999999994 688887543211111                           23332  222221


Q ss_pred             hhhcCCcCCCCCCcEEEEcCC---------ChHHHHHHHHHHHHcCC-eEEEEeecc
Q 012768          100 ALIEMNPPFFSQFTLVVATQL---------GEEKMIKLDRICREANV-MLIFARSYG  146 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~---------~~~~~~~l~~~~~~~~i-p~i~~~~~G  146 (456)
                      +..+.-.+.++++|+||.+..         +......+.+.|++.++ .+|..++.+
T Consensus        52 d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           52 WTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             SCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence            100001244667888886532         23345667778888775 566666544

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.23  E-value=0.11  Score=50.37  Aligned_cols=34  Identities=9%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|.|+|+|.+|+.+|..|+..|...++++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            3589999999999999999999998669999854

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.22  E-value=0.16  Score=45.73  Aligned_cols=94  Identities=14%  Similarity=0.175  Sum_probs=56.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH-hCCCCEEEEEecCh
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE-LNDAVKAKFIEEYP   98 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~-lnp~v~v~~~~~~~   98 (456)
                      +|+|.|+ |++|..+++.|+..|. ++++++.+.                          ..+.+ ..+.+++..  .+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~--------------------------~~~~~~~~~~~~~~~--~D~   52 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP--------------------------QKAADRLGATVATLV--KEP   52 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH--------------------------HHHHHHTCTTSEEEE--CCG
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc--------------------------cccccccCCCceEEe--ccc
Confidence            6999996 8899999999999995 677765321                          11111 123454432  222


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCC----------hHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           99 EALIEMNPPFFSQFTLVVATQLG----------EEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~----------~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      .+   ...+.+.++|+||.+...          ......+.+.|++.+..+|..++.|
T Consensus        53 ~d---~~~~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~  107 (224)
T 3h2s_A           53 LV---LTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGSA  107 (224)
T ss_dssp             GG---CCHHHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCGG
T ss_pred             cc---ccHhhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecce
Confidence            11   111446688999865422          2234455667777777777776654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.20  E-value=0.39  Score=44.91  Aligned_cols=97  Identities=11%  Similarity=0.101  Sum_probs=61.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      ..+|+|.|+|.+|+.+++.|...|. +++.++.+.                   .++.    .+..  +.++  .+..+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~----~~~~--~~~~--~~~~D~   56 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP-------------------DQME----AIRA--SGAE--PLLWPG   56 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG-------------------GGHH----HHHH--TTEE--EEESSS
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhhh----hHhh--CCCe--EEEecc
Confidence            3689999999999999999999986 566665321                   1221    1222  2333  333332


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCC----hHHHHHHHHHHHH--cC-CeEEEEeecccee
Q 012768           99 EALIEMNPPFFSQFTLVVATQLG----EEKMIKLDRICRE--AN-VMLIFARSYGLTG  149 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~----~~~~~~l~~~~~~--~~-ip~i~~~~~G~~G  149 (456)
                      .+     .+ +.++|+||.+...    ......+.+.|++  .+ ..+|++++.+.+|
T Consensus        57 ~d-----~~-~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg  108 (286)
T 3ius_A           57 EE-----PS-LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYG  108 (286)
T ss_dssp             SC-----CC-CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGC
T ss_pred             cc-----cc-cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecC
Confidence            22     22 7789999965422    2334566677777  44 4688888888877

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.20  E-value=0.069  Score=51.57  Aligned_cols=51  Identities=22%  Similarity=0.220  Sum_probs=31.9

Q ss_pred             CcccccccCHHHHH--HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768            2 SMSTLRIWGEQGQA--ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus         2 y~RQlrlwG~~~q~--~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      |+-+-+.|-.+...  ..+..+|.|||+|.+|+.++++|+..|. .++++|.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A            2 GSSHHHHHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             ----------------CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CCcccccccccccCcccccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            44444444333333  4445689999999999999999999997 799998654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=94.13  E-value=0.26  Score=46.88  Aligned_cols=66  Identities=12%  Similarity=0.129  Sum_probs=48.6

Q ss_pred             HHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC
Q 012768           11 EQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIG--SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND   87 (456)
Q Consensus        11 ~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~--~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp   87 (456)
                      ......|++++|+|.| .||+|.++|+.|+..|.+  ++.++|.+                   ..+.+.+++.+.+.++
T Consensus        25 ~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-------------------~~~~~~~~~~l~~~~~   85 (287)
T 3rku_A           25 RKAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-------------------LEKLEELKKTIDQEFP   85 (287)
T ss_dssp             HHHHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-------------------HHHHHHHHHHHHHHCT
T ss_pred             ccchhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-------------------HHHHHHHHHHHHhhCC
Confidence            3445779999999998 688999999999999885  67776532                   2356666777777766


Q ss_pred             CCEEEEEe
Q 012768           88 AVKAKFIE   95 (456)
Q Consensus        88 ~v~v~~~~   95 (456)
                      ..++..+.
T Consensus        86 ~~~~~~~~   93 (287)
T 3rku_A           86 NAKVHVAQ   93 (287)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEE
Confidence            66655543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.13  E-value=0.22  Score=48.24  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d   52 (456)
                      .+|.|||+|.+|..+++.|...|.. .++++|.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            6899999999999999999999984 78888743

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.08  E-value=0.16  Score=48.41  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ..+|+|.| .|.+|+.+++.|...|. +++.++... ....+.                           .+++...+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~~~~~~---------------------------~~~~~~~Dl~   52 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSI-GNKAIN---------------------------DYEYRVSDYT   52 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC-C--------------------------------CCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCC-CcccCC---------------------------ceEEEEcccc
Confidence            36899999 58899999999999996 677777541 100010                           2222221111


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCC-------------hHHHHHHHHHHHHcCCe-EEEEeecccee
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLG-------------EEKMIKLDRICREANVM-LIFARSYGLTG  149 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~-------------~~~~~~l~~~~~~~~ip-~i~~~~~G~~G  149 (456)
                      .+.+    .+.++++|+||.+...             ......+.+.|++.+++ +|..++.+.+|
T Consensus        53 ~~~~----~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg  114 (311)
T 3m2p_A           53 LEDL----INQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYS  114 (311)
T ss_dssp             HHHH----HHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred             HHHH----HHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhC
Confidence            1111    1234467777744211             22245677788888876 88888887776

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=94.07  E-value=0.35  Score=46.49  Aligned_cols=117  Identities=21%  Similarity=0.252  Sum_probs=68.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh-
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP-   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~-   98 (456)
                      ++|.+||+|..|..+|+||+.+|. .++++|.+.-....+.        +.|-..+...++..+  +.++-+..+.... 
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~--------~~Ga~~a~s~~e~~~--~~dvv~~~l~~~~~   72 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLV--------AAGASAARSARDAVQ--GADVVISMLPASQH   72 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHH--------HTTCEECSSHHHHHT--TCSEEEECCSCHHH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHH--------HcCCEEcCCHHHHHh--cCCceeecCCchHH
Confidence            479999999999999999999997 5888874432111111        112222222222221  2344444332211 


Q ss_pred             -hhhhcCC---cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           99 -EALIEMN---PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        99 -~~~~~~~---~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                       ..+....   ...+..=++||+ ++.+......+.+.+.++++-|+.+-+.|-
T Consensus        73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg  126 (300)
T 3obb_A           73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGG  126 (300)
T ss_dssp             HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESC
T ss_pred             HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCC
Confidence             1111111   222344467775 456677788999999999999999877764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.07  E-value=0.2  Score=48.31  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            34689999999999999999999998789999864

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.06  E-value=0.041  Score=54.09  Aligned_cols=40  Identities=20%  Similarity=0.261  Sum_probs=29.2

Q ss_pred             HHHHHHhcCcEEEEc-CChhHHHHHHHHHHc-CCCcEEEEeCC
Q 012768           12 QGQAALEKASVCLLN-CGPTGSETLKNLVLG-GIGSITVIDGS   52 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG-~gglG~eiaknLvl~-Gv~~itlvD~d   52 (456)
                      .|+..++..+|+|.| .|.+|+.+++.|... |. +++.+|..
T Consensus        17 ~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~   58 (372)
T 3slg_A           17 QGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQ   58 (372)
T ss_dssp             ------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESC
T ss_pred             cCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCC
Confidence            456778889999999 588999999999998 64 68888754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.01  E-value=0.19  Score=48.56  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|.|+|+|.+|..++..|+..|.-.++++|-
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di   34 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDI   34 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeC
Confidence            58999999999999999999999744999984

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.01  E-value=0.17  Score=49.28  Aligned_cols=33  Identities=9%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEe
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD   50 (456)
                      ...+|.|+|+|.+|+.+|..|+..|+ +.++++|
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~D   53 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVD   53 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence            34789999999999999999999998 5799998

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=93.96  E-value=0.14  Score=49.51  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=26.9

Q ss_pred             HHHHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           13 GQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        13 ~q~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+..++..+|+|.|+ |.+|+.+++.|...|. +++++|..
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   52 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR   52 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            456788899999996 8899999999999995 57777754

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.81  E-value=0.12  Score=50.65  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             HhcCcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           17 LEKASVCLLNC-GPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~-gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      +...+|.|+|+ |.+|+.+|..|+..|. ..++++|-
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi   42 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDP   42 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeC
Confidence            45679999997 9999999999999997 57999983

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.75  E-value=0.2  Score=48.64  Aligned_cols=72  Identities=21%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC---CCCEEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN---DAVKAKFIE   95 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln---p~v~v~~~~   95 (456)
                      .+|.|+|+|.+|..++..|+..|. ..+.|+|-                   ...|++..+..|....   +.+++..  
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~v~~--   64 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV-------------------VKDRTKGDALDLEDAQAFTAPKKIYS--   64 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------SHHHHHHHHHHHHGGGGGSCCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHHHHHHHHHHHHHHhcCCeEEEE--
Confidence            689999999999999999999885 46889883                   2235555555555443   3444443  


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      .        ..+.+++.|+||.+..
T Consensus        65 ~--------~~~a~~~aDvVii~ag   81 (318)
T 1ez4_A           65 G--------EYSDCKDADLVVITAG   81 (318)
T ss_dssp             C--------CGGGGTTCSEEEECCC
T ss_pred             C--------CHHHhCCCCEEEECCC
Confidence            1        2234779999998754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.63  E-value=0.28  Score=47.50  Aligned_cols=71  Identities=8%  Similarity=0.094  Sum_probs=47.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh----CCCCEEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL----NDAVKAKFIE   95 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l----np~v~v~~~~   95 (456)
                      +|.|+|+|.+|+.++..|+..|+ ..++++|-+.                   .|++..+.-|+..    ...+++...+
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~-------------------~k~~g~a~DL~~~~~~~~~~~~v~~~~   62 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD-------------------GMPQGKALDMRESSPIHGFDTRVTGTN   62 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch-------------------HHHHHHHHHHhccccccCCCcEEEECC
Confidence            79999999999999999999997 4799998322                   2444433344432    2345544221


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                               +.+.++++|+||.+.
T Consensus        63 ---------~~~a~~~aDvVii~a   77 (314)
T 3nep_X           63 ---------DYGPTEDSDVCIITA   77 (314)
T ss_dssp             ---------SSGGGTTCSEEEECC
T ss_pred             ---------CHHHhCCCCEEEECC
Confidence                     234477899999774

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.62  E-value=0.18  Score=48.54  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=28.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      +|.|+|+|.+|+.++..|+..|. +.++++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            79999999999999999999995 569999843

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.58  E-value=0.11  Score=49.36  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            689999999999999999999998 68888843

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=93.57  E-value=0.24  Score=46.48  Aligned_cols=34  Identities=21%  Similarity=0.298  Sum_probs=30.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++. +|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~  148 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRT  148 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            556 99999999999999999999998 89998743

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.56  E-value=0.054  Score=53.84  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=35.2

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|+..+|+|+|+|..|..+++.|+..|+++|+++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            6889999999999999999999999999999999976

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.54  E-value=0.24  Score=50.97  Aligned_cols=127  Identities=11%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             HHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEE
Q 012768           14 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAK   92 (456)
Q Consensus        14 q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~   92 (456)
                      ...+.+.+|.|||+|..|+.+|.+|+..|. .++++|.+.-....+....  .  +-|-.-+....+.+..+ .+++-+.
T Consensus        10 ~~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~~~~~~~l~~~~--~--~~gi~~~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           10 HHHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRSREKTEEVIAEN--P--GKKLVPYYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             -----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSHHHHHHHHHHS--T--TSCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             ccccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHhhC--C--CCCeEEeCCHHHHHhCCCCCCEEEE
Confidence            346888999999999999999999999997 5889886532211111100  0  00000001112223322 1455444


Q ss_pred             EEecC--hhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEeec
Q 012768           93 FIEEY--PEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSY  145 (456)
Q Consensus        93 ~~~~~--~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~  145 (456)
                      .+...  ...+.+.-...++.-++||.+.. .......+.+.+...++.++.+.+.
T Consensus        85 ~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~  140 (480)
T 2zyd_A           85 MVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVS  140 (480)
T ss_dssp             CSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccc
Confidence            44331  11222111233444567775543 3333445566666667777766554

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.48  E-value=0.11  Score=53.56  Aligned_cols=122  Identities=14%  Similarity=0.197  Sum_probs=69.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcc--hHHHHHHHHHHh-CCCCEEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES--KAKSVCAFLQEL-NDAVKAKFIE   95 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~--Ka~~~~~~l~~l-np~v~v~~~~   95 (456)
                      ..+|.|||+|..|..+|++|+..|. .++++|.+.-....+...     ...|..  -+....+.+..+ .+++-+..+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-----g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp   77 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLAN-----EAKGTKVVGAQSLKEMVSKLKKPRRIILLVK   77 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHT-----TTTTSSCEECSSHHHHHHTBCSSCEEEECSC
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc-----ccCCCceeccCCHHHHHhhccCCCEEEEecC
Confidence            4689999999999999999999997 689998654222211110     000100  011122223322 3555444443


Q ss_pred             cC--hhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           96 EY--PEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        96 ~~--~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      ..  ...+.+.-...++.-++||.+.. .......+.+.+...++.|+.+.+.|
T Consensus        78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             SSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            32  11111111234556678886654 44445566677788899999887655

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.40  E-value=0.34  Score=46.02  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+...+|+|.|+ |.+|+.+++.|...|. +++.+|...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            356789999996 8899999999999996 688877544

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.39  E-value=0.059  Score=51.87  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +..++|+|+|+|++|..++..|...|+.+++++|.
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR  173 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANR  173 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            56789999999999999999999999999999873

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.38  E-value=0.064  Score=50.08  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI---GSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD~d   52 (456)
                      ..+|.|||+|.+|+.++++|...|.   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            3589999999999999999999995   679999854

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=93.36  E-value=0.067  Score=51.12  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +++++|+|+|+||.|..++..|...|++++++++.
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nR  154 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTR  154 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEES
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence            46789999999999999999999999999999863

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.31  E-value=0.53  Score=42.29  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=28.3

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|+|.| .|.+|..+++.|...| .++++++...
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCc
Confidence            5899999 5889999999999999 4788887654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.30  E-value=0.14  Score=49.78  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=27.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      +|.|+|+|.+|+.++..|+..|. +.++++|.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~   33 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            79999999999999999999995 46899884

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.30  E-value=0.11  Score=49.61  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=30.4

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++.++|+|.| +||+|..+++.|+..|.. ++++|.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R  151 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGR  151 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEEC
Confidence            5678999999 999999999999999986 888863

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.22  E-value=0.27  Score=46.24  Aligned_cols=30  Identities=13%  Similarity=0.188  Sum_probs=27.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|.|||+|.+|+.+++.|...|. +++++|.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   31 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSR   31 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            69999999999999999999997 6888763

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=93.18  E-value=0.54  Score=44.52  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=25.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|+|.|+ |.+|..+++.|...|. +++++|.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   32 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGY-EVVVVDN   32 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC-EEEEEeC
Confidence            7999996 8899999999999996 5777764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.06  E-value=0.072  Score=53.03  Aligned_cols=38  Identities=24%  Similarity=0.415  Sum_probs=36.0

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +++..+|+|+|+|..|..+++.|+.+|+++|+++|..-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            68899999999999999999999999999999999875

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=93.00  E-value=0.35  Score=47.11  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=28.4

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHH--cCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVL--GGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl--~Gv~~itlvD~   51 (456)
                      ++..+|+|.| .|.+|+.+++.|..  .|. +++++|.
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r   44 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDK   44 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEEC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEEC
Confidence            5678999997 68899999999999  776 5777774

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.98  E-value=0.13  Score=49.33  Aligned_cols=32  Identities=19%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.||| +|.+|+.+++.|...|. .++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            5899999 99999999999999997 68888854

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.98  E-value=0.092  Score=47.40  Aligned_cols=33  Identities=18%  Similarity=0.394  Sum_probs=29.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...|+|||+|+.|..+|..|++.|+ +++|+|..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~   34 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS   34 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            3579999999999999999999999 59999954

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.97  E-value=0.11  Score=48.43  Aligned_cols=30  Identities=23%  Similarity=0.244  Sum_probs=27.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|.|||+|.+|+.++.+|...|...++++|
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~   31 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEEC
Confidence            699999999999999999999965678876

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.96  E-value=0.22  Score=47.86  Aligned_cols=31  Identities=16%  Similarity=0.136  Sum_probs=26.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|+|+|++|+.++..|. .| ..+++++.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g-~~V~~~~r   32 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LY-HDVTVVTR   32 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT-SEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cC-CceEEEEC
Confidence            368999999999999999999 88 46888763

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.94  E-value=0.13  Score=50.25  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=28.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|+|+|.+|+.++..|...|. .++++|.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3689999999999999999999996 58888743

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=92.88  E-value=0.17  Score=51.81  Aligned_cols=38  Identities=18%  Similarity=0.103  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .++..+|+|+|+|++|..++..|+..|-.+++++|.+.
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~   57 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTL   57 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSH
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            46678999999999999999999998434799998653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.86  E-value=1.2  Score=42.42  Aligned_cols=110  Identities=12%  Similarity=-0.023  Sum_probs=61.8

Q ss_pred             HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCCEEEEE
Q 012768           17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVKAKFI   94 (456)
Q Consensus        17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v~v~~~   94 (456)
                      +++.+|+|.|+ |.+|+.+++.|...|. +++++|.+.                   .+.+.+.+.+.... +.++  .+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~--~~   66 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA-------------------SKLANLQKRWDAKYPGRFE--TA   66 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHSTTTEE--EE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc-------------------ccHHHHHHHhhccCCCceE--EE
Confidence            45678999995 8899999999999995 577665321                   12333334443333 3333  33


Q ss_pred             -ecChhhhhcCCcCCCCCCcEEEEcCC------ChH--------HHHHHHHHHHH-cC-CeEEEEeecccee
Q 012768           95 -EEYPEALIEMNPPFFSQFTLVVATQL------GEE--------KMIKLDRICRE-AN-VMLIFARSYGLTG  149 (456)
Q Consensus        95 -~~~~~~~~~~~~~~~~~~dvVi~~~~------~~~--------~~~~l~~~~~~-~~-ip~i~~~~~G~~G  149 (456)
                       ..+..+. +.-.+.++++|+||.+..      +..        ....+.+.|.+ .+ ..+|.+++.+.+|
T Consensus        67 ~~~D~~d~-~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~  137 (342)
T 1y1p_A           67 VVEDMLKQ-GAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSAL  137 (342)
T ss_dssp             ECSCTTST-TTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTC
T ss_pred             EecCCcCh-HHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhc
Confidence             2222111 111345668999995432      111        12344556663 34 4677777766554

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.85  E-value=0.39  Score=46.83  Aligned_cols=33  Identities=15%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|+|+|.+|+.+|..|+..|...++++|.+
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998559999843

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.85  E-value=0.24  Score=48.28  Aligned_cols=72  Identities=26%  Similarity=0.190  Sum_probs=49.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC---CCCEEEEE
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN---DAVKAKFI   94 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln---p~v~v~~~   94 (456)
                      ..+|.|+|+|.+|..++..|+..|. ..+.|+|-                   ...|++..+..|....   +.+++.. 
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~i~~-   68 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI-------------------FKDKTKGDAIDLSNALPFTSPKKIYS-   68 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------CHHHHHHHHHHHHTTGGGSCCCEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHhHHHHHHHHHHHHhcCCeEEEE-
Confidence            4689999999999999999998885 46888883                   2235555444454433   3444443 


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                       .        ..+.+++.|+||.+.
T Consensus        69 -~--------~~~a~~~aDvVii~a   84 (326)
T 2zqz_A           69 -A--------EYSDAKDADLVVITA   84 (326)
T ss_dssp             -C--------CGGGGGGCSEEEECC
T ss_pred             -C--------CHHHhCCCCEEEEcC
Confidence             1        223467899999775

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.72  E-value=0.39  Score=45.24  Aligned_cols=32  Identities=25%  Similarity=0.239  Sum_probs=27.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~   51 (456)
                      .+|.|||+|.+|..+++.|...|.. +++++|.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~   34 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            4799999999999999999999963 5887773

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.65  E-value=0.48  Score=45.61  Aligned_cols=32  Identities=16%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      +|+|+|+|.+|+.++..|+..|. ..++++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            79999999999999999999764 469999843

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=92.49  E-value=0.33  Score=46.42  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|.|||+|.+|+.++++|+..|. .++++|.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999996 68888743

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=92.46  E-value=0.12  Score=49.02  Aligned_cols=33  Identities=12%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..++|+|+|+||.|..++..|...|++++++++
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~n  150 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA  150 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            357899999999999999999999999999986

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.44  E-value=0.46  Score=49.01  Aligned_cols=125  Identities=13%  Similarity=0.127  Sum_probs=66.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~   96 (456)
                      ...+|.|||+|..|+.+|.+|+..|. .++++|.+.-....+..... .  ..|-.-+....+.+..+ .+++-+..+..
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~-~--~~gi~~~~s~~e~v~~l~~aDvVil~Vp~   84 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQSKVDHFLANEA-K--GKSIIGATSIEDFISKLKRPRKVMLLVKA   84 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSHHHHHHHHTTT-T--TSSEECCSSHHHHHHTSCSSCEEEECCCS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHcccc-c--CCCeEEeCCHHHHHhcCCCCCEEEEEcCC
Confidence            35789999999999999999999997 68999865422221111000 0  00100011122233322 25555554443


Q ss_pred             C--hhhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           97 Y--PEALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        97 ~--~~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      .  ...+.+.-...++.=++||.+. ........+.+.+...++.++.+.+.|
T Consensus        85 ~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsg  137 (497)
T 2p4q_A           85 GAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSG  137 (497)
T ss_dssp             SHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCccc
Confidence            2  1112111123455556777554 333344556666667788887665544

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=92.36  E-value=0.052  Score=52.69  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=26.6

Q ss_pred             HhcCcEEEEcC-ChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768           17 LEKASVCLLNC-GPTGSETLKNLVLGGIG-SITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~-~itlvD~   51 (456)
                      +...+|+|.|+ |.+|+.+++.|...|.. .++.+|.
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~   58 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDA   58 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEec
Confidence            55678999996 88999999999999943 4555554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=92.34  E-value=0.15  Score=46.47  Aligned_cols=31  Identities=13%  Similarity=0.268  Sum_probs=26.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEE-Ee
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITV-ID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itl-vD   50 (456)
                      -.+|.|||+|.+|..+++.|...|. .+++ +|
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~   54 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI-PAIIANS   54 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC-CEEEECT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            3689999999999999999999997 4555 54

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=92.33  E-value=0.34  Score=46.81  Aligned_cols=71  Identities=18%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC---CCCEEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN---DAVKAKFIE   95 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln---p~v~v~~~~   95 (456)
                      .||.|+|+|.+|..++..|+..|. +.++|+|-+                   ..|++..+..|....   ..++++. .
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~k~~g~a~dl~~~~~~~~~~~v~~-~   60 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLD-------------------RKLAQAHAEDILHATPFAHPVWVWA-G   60 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHTTGGGSCCCEEEE-C
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhHhhcCCeEEEE-C
Confidence            379999999999999999998875 569999832                   235555455555533   3445443 1


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                               +.+.+++.|+||.+.
T Consensus        61 ---------~~~a~~~aD~Vii~a   75 (310)
T 2xxj_A           61 ---------SYGDLEGARAVVLAA   75 (310)
T ss_dssp             ---------CGGGGTTEEEEEECC
T ss_pred             ---------CHHHhCCCCEEEECC
Confidence                     123477999999764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.32  E-value=0.15  Score=48.45  Aligned_cols=33  Identities=33%  Similarity=0.428  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|||+|.+|+.++++|...|. .++++|.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            579999999999999999999995 688888654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=92.30  E-value=1.3  Score=40.10  Aligned_cols=37  Identities=30%  Similarity=0.467  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCC-cEEEEeCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIG-SITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~-~itlvD~d   52 (456)
                      .+...+|+|.| .|++|..+++.|+..|.. +++++|.+
T Consensus        15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~   53 (242)
T 2bka_A           15 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   53 (242)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             hhcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcC
Confidence            36678899999 689999999999999974 78888754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.30  E-value=0.24  Score=47.01  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|||+|.+|+.++++|+..|. .++++|.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            479999999999999999999995 688988654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=92.22  E-value=0.11  Score=52.74  Aligned_cols=35  Identities=23%  Similarity=0.525  Sum_probs=32.9

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCC--CcEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGI--GSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv--~~itlvD   50 (456)
                      .++..+|+|+|+||.|..+++.|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            4677899999999999999999999999  8999998

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.13  E-value=0.17  Score=49.04  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      ..+|.|+|+|.+|..++-.|+..|. +.++++|-+
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999886 569999843

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=92.11  E-value=0.092  Score=50.30  Aligned_cols=34  Identities=15%  Similarity=0.093  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..+|.|||+|.+|..++++|...|. .++++|.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999996 688888543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=92.08  E-value=0.32  Score=46.59  Aligned_cols=115  Identities=12%  Similarity=0.131  Sum_probs=63.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC--CCCEEEEEec
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN--DAVKAKFIEE   96 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln--p~v~v~~~~~   96 (456)
                      ..||.+||+|-.|..+|+||+..|. .++++|.+.-....+..        .|-..++    .+.++-  .++-+..+..
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~G~~~~~----s~~e~~~~~dvvi~~l~~   71 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTASKAEPLTK--------LGATVVE----NAIDAITPGGIVFSVLAD   71 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC-------CTTTT--------TTCEECS----SGGGGCCTTCEEEECCSS
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH--------cCCeEeC----CHHHHHhcCCceeeeccc
Confidence            4589999999999999999999997 58888854433332221        1211111    111221  2333222221


Q ss_pred             Chhhhhc----CCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           97 YPEALIE----MNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        97 ~~~~~~~----~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                       +....+    .....+..-+++|.+ +.+......+.+.+.++++.|+.+...|.
T Consensus        72 -~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg  126 (297)
T 4gbj_A           72 -DAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFAR  126 (297)
T ss_dssp             -HHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECC
T ss_pred             -hhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCC
Confidence             111100    001123344577754 55667788889999999999999887764

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=92.03  E-value=1.2  Score=43.20  Aligned_cols=39  Identities=28%  Similarity=0.341  Sum_probs=28.3

Q ss_pred             HHHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           14 QAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        14 q~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +..+...+|+|.|+ |.+|+.+++.|...|...++++|..
T Consensus        41 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           41 GSGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            34566789999996 8899999999999997778888754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=91.99  E-value=0.26  Score=47.94  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=28.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ...+|.|||+|.+|+.++.+|+.+|. .++++|.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r   45 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWAR   45 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            35789999999999999999999995 6888763

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=91.98  E-value=1.3  Score=42.52  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             HHHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +.+++.+|+|.|+ |++|..+++.|+..|. +++++|..
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~   53 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF   53 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3567789999995 8899999999999994 68888753

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=91.95  E-value=0.38  Score=47.27  Aligned_cols=76  Identities=12%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ...+|+|||+|+.|..++..|.. .++.+++++|.+                   ..|++.+++.+.+. +.+.+.... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~-------------------~~~a~~la~~~~~~-~g~~~~~~~-  186 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD-------------------PLATAKLIANLKEY-SGLTIRRAS-  186 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHTTC-TTCEEEECS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC-------------------HHHHHHHHHHHHhc-cCceEEEeC-
Confidence            46789999999999999999864 588999998732                   23666666665432 344444332 


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      +.       .+.+.++|+||.|+.+
T Consensus       187 ~~-------~eav~~aDiVi~aTps  204 (350)
T 1x7d_A          187 SV-------AEAVKGVDIITTVTAD  204 (350)
T ss_dssp             SH-------HHHHTTCSEEEECCCC
T ss_pred             CH-------HHHHhcCCEEEEeccC
Confidence            21       1234578999988765

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=91.60  E-value=0.44  Score=45.05  Aligned_cols=34  Identities=12%  Similarity=0.088  Sum_probs=28.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      ...+|.|||+|.+|+.+++.|...|. ..++++|.
T Consensus         5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~   39 (290)
T 3b1f_A            5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNR   39 (290)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcC
Confidence            34689999999999999999999974 35777763

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=91.60  E-value=0.6  Score=47.96  Aligned_cols=33  Identities=15%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|||+|.+|+.++.+|+..|. .++++|.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            479999999999999999999997 589998643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.58  E-value=0.16  Score=48.05  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .++|+|+|+||.|..++..|...| .++++++.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nR  149 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNR  149 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence            789999999999999999999999 99999863

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=91.54  E-value=0.55  Score=44.60  Aligned_cols=29  Identities=28%  Similarity=0.407  Sum_probs=23.6

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ++|+|.| .|.+|..+++.|...|  .++.++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~   31 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVID   31 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEE
Confidence            3799999 5889999999999999  555554

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.45  E-value=0.15  Score=48.09  Aligned_cols=33  Identities=15%  Similarity=0.193  Sum_probs=30.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +..++|+|+|+||+|..++..|...| .+++++|
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~  149 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITN  149 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEE
Confidence            46789999999999999999999999 7899986

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=91.38  E-value=0.14  Score=49.72  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ....+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   64 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTP   64 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCH
Confidence            344589999999999999999999996 588888543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=91.38  E-value=0.6  Score=45.18  Aligned_cols=35  Identities=17%  Similarity=0.175  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+...+|+|.|+ |.+|+.+++.|...|. +++++|.
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   59 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   59 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            366788999996 8899999999999995 6777764

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=91.38  E-value=0.71  Score=44.71  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=51.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ...+|+|||+|+.|...++.|.. .++..++++|.+                   ..|++.+++.+....  +.+. .. 
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-------------------~~~a~~la~~~~~~~--~~~~-~~-  180 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR-------------------EKAAKKFVSYCEDRG--ISAS-VQ-  180 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHHHTT--CCEE-EC-
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhcC--ceEE-EC-
Confidence            45789999999999999999987 478999998732                   247777777766432  3333 22 


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      +.       .+.+ ++|+|+.|+.+
T Consensus       181 ~~-------~e~v-~aDvVi~aTp~  197 (322)
T 1omo_A          181 PA-------EEAS-RCDVLVTTTPS  197 (322)
T ss_dssp             CH-------HHHT-SSSEEEECCCC
T ss_pred             CH-------HHHh-CCCEEEEeeCC
Confidence            22       1235 78999988764

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=91.34  E-value=0.31  Score=45.46  Aligned_cols=31  Identities=16%  Similarity=0.338  Sum_probs=24.3

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeC
Q 012768           21 SVCLLNC-GPTGSETLKNLVLG-GIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~-Gv~~itlvD~   51 (456)
                      +|.|+|+ |.+|..+++.+... |..=+.++|.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            7999997 99999999998755 7654456663

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=91.32  E-value=0.48  Score=43.22  Aligned_cols=105  Identities=15%  Similarity=0.094  Sum_probs=58.0

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +..++|+|.| .|++|..+++.|+..|--++++++.+.-....+.                         .+.+.  .+.
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-------------------------~~~~~--~~~   73 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-------------------------PTNSQ--IIM   73 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-------------------------CTTEE--EEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-------------------------cCCcE--EEE
Confidence            3346799999 6899999999999999447888775432211110                         01222  222


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChH---HHHHHHHHHHHcCC-eEEEEeecccee
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEE---KMIKLDRICREANV-MLIFARSYGLTG  149 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~---~~~~l~~~~~~~~i-p~i~~~~~G~~G  149 (456)
                      .+..+.. .-...+++.|+||.+.....   ....+.+.+++.++ .+|..++.+.++
T Consensus        74 ~Dl~d~~-~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~  130 (236)
T 3qvo_A           74 GDVLNHA-ALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLGIYD  130 (236)
T ss_dssp             CCTTCHH-HHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCCC--
T ss_pred             ecCCCHH-HHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEEecceecC
Confidence            2211100 00123557889885543211   23456667777775 477777766554

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=91.13  E-value=0.58  Score=45.29  Aligned_cols=103  Identities=14%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             HhcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           17 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        17 L~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      +...+|+|.|+ |.+|..+++.|...| .++++++.+.-.               ...|+..+ +.+.  .+.+++...+
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~---------------~~~~~~~~-~~l~--~~~v~~~~~D   68 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPR---------------SPSKAKIF-KALE--DKGAIIVYGL   68 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCC---------------CHHHHHHH-HHHH--HTTCEEEECC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCC---------------ChhHHHHH-HHHH--hCCcEEEEee
Confidence            45679999997 889999999999999 567777643200               01122211 1222  2345543322


Q ss_pred             cChhhhhcCCcCCCC--CCcEEEEcCC--ChHHHHHHHHHHHHcC-CeEEE
Q 012768           96 EYPEALIEMNPPFFS--QFTLVVATQL--GEEKMIKLDRICREAN-VMLIF  141 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~--~~dvVi~~~~--~~~~~~~l~~~~~~~~-ip~i~  141 (456)
                      -  .+.. .-...++  ++|+||.+..  +......+.+.|++.+ ++.+.
T Consensus        69 l--~d~~-~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           69 I--NEQE-AMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             T--TCHH-HHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEE
T ss_pred             c--CCHH-HHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHcCCceEEe
Confidence            1  1100 0122355  8999996653  3445667888888888 76554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.13  E-value=0.84  Score=46.56  Aligned_cols=97  Identities=13%  Similarity=0.150  Sum_probs=65.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      ..+|+|+|.|-+|..+|+.|-. + .++++++.|.                   .|++.++    +..|.+.+-.-+...
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~d~-------------------~r~~~la----~~l~~~~Vi~GD~td  289 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIERNL-------------------QRAEKLS----EELENTIVFCGDAAD  289 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-T-SEEEEEESCH-------------------HHHHHHH----HHCTTSEEEESCTTC
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-c-CceEEEecCH-------------------HHHHHHH----HHCCCceEEeccccc
Confidence            5689999999999999999853 3 5788887443                   3554444    444555433222111


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                      ..+.  ..+-+.++|++|+++.+.+.-....-++++.|++-+.+
T Consensus       290 ~~~L--~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          290 QELL--TEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             HHHH--HHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             hhhH--hhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccc
Confidence            1111  12346689999998888787778888999999885555

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=91.12  E-value=0.75  Score=44.13  Aligned_cols=31  Identities=23%  Similarity=0.405  Sum_probs=27.3

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIG-SITVIDG   51 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~-~itlvD~   51 (456)
                      ||+|+| +|.+|..++..|+..|.. .++|+|.
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di   34 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcC
Confidence            799999 999999999999988864 4888884

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=91.09  E-value=0.51  Score=45.53  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=26.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVI   49 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlv   49 (456)
                      ....+|+|+|+|++|+.++..|+..|. .++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            456789999999999999999999995 56665

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.03  E-value=0.77  Score=47.00  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|.|||+|.+|+.++.+|+..|. .++++|.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            4689999999999999999999997 58888854

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=90.98  E-value=0.61  Score=41.86  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=58.0

Q ss_pred             CcEEEEc-CChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           20 ASVCLLN-CGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ++|+|.| .|++|..+++.|+ ..|. ++++++.+.-.                  ++    +.+.+..+.+.+  +..+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~------------------~~----~~~~~~~~~~~~--~~~D   60 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT------------------RI----PPEIIDHERVTV--IEGS   60 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH------------------HS----CHHHHTSTTEEE--EECC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc------------------cc----hhhccCCCceEE--EECC
Confidence            3599999 6899999999999 8997 67777643210                  11    111122344433  3222


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcCC-eEEEEeeccce
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLG--EEKMIKLDRICREANV-MLIFARSYGLT  148 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~i-p~i~~~~~G~~  148 (456)
                      ..+.. .-...+++.|+||.+...  .. ...+.+.+++.++ .+|..++.+.+
T Consensus        61 ~~d~~-~~~~~~~~~d~vv~~ag~~n~~-~~~~~~~~~~~~~~~iv~iSs~~~~  112 (221)
T 3r6d_A           61 FQNPG-XLEQAVTNAEVVFVGAMESGSD-MASIVKALSRXNIRRVIGVSMAGLS  112 (221)
T ss_dssp             TTCHH-HHHHHHTTCSEEEESCCCCHHH-HHHHHHHHHHTTCCEEEEEEETTTT
T ss_pred             CCCHH-HHHHHHcCCCEEEEcCCCCChh-HHHHHHHHHhcCCCeEEEEeeceec
Confidence            11100 002235678999966532  23 4556667777765 46766666544

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=90.86  E-value=0.18  Score=50.63  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +...+|+|+|+|++|..+++.|...|+++++++|.
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r  199 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR  199 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            57899999999999999999999999999999873

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.74  E-value=0.15  Score=48.31  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=30.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++.++|+|+|+||+|..++..|...| .+++++|.
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R  150 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANR  150 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEES
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence            46789999999999999999999999 89999873

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=90.71  E-value=1.2  Score=40.83  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=27.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|.|||+|.+|..++++|...|+.-..++|.+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            69999999999999999998887544677754

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=90.68  E-value=0.52  Score=44.52  Aligned_cols=102  Identities=17%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCc-chHHHHHHHHHHhCCCCEEEEEec
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGE-SKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~-~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ..+|+|.|+ |.+|..+++.|+..| .++++++.+.-.    ..         .. .|++.+ +.+.  .+.+++...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~----~~---------~~~~~~~~~-~~l~--~~~v~~v~~D~   64 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTIT----AA---------NPETKEELI-DNYQ--SLGVILLEGDI   64 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCC----SS---------CHHHHHHHH-HHHH--HTTCEEEECCT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcc----cC---------ChHHHHHHH-HHHH--hCCCEEEEeCC
Confidence            357999995 889999999999999 467776543200    00         00 133222 1222  24455433221


Q ss_pred             C-hhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcC-CeEEE
Q 012768           97 Y-PEALIEMNPPFFSQFTLVVATQLG--EEKMIKLDRICREAN-VMLIF  141 (456)
Q Consensus        97 ~-~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~-ip~i~  141 (456)
                      . ++.+    ...+++.|+||.+...  ......+.+.|++.+ ++-+.
T Consensus        65 ~d~~~l----~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           65 NDHETL----VKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             TCHHHH----HHHHTTCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             CCHHHH----HHHHhCCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            1 1111    2345689999976532  344566777888877 65443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=90.68  E-value=0.24  Score=42.99  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|+|||.|..|.++|..|.+.|. +++++|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            379999999999999999999997 699999654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=90.64  E-value=0.24  Score=45.93  Aligned_cols=39  Identities=15%  Similarity=0.188  Sum_probs=30.7

Q ss_pred             HHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           14 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        14 q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...+...+|.|||+|.+|+.+|++|+..|. .++++|.+.
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~   52 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDP   52 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            357889999999999999999999999996 688888543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=90.58  E-value=0.36  Score=45.68  Aligned_cols=101  Identities=15%  Similarity=0.172  Sum_probs=56.8

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEec
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEE   96 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~   96 (456)
                      ..+|+|.|+ |.+|..+++.|...| .++++++.+.-..    +         ...|++    .+.++ .+.+++...+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~----~---------~~~~~~----~~~~l~~~~v~~v~~D~   65 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTAS----S---------NSEKAQ----LLESFKASGANIVHGSI   65 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTT----T---------THHHHH----HHHHHHTTTCEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccc----c---------CHHHHH----HHHHHHhCCCEEEEecc
Confidence            367999996 889999999999999 4677765332100    0         011222    22222 34555432221


Q ss_pred             C-hhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcC-CeEEE
Q 012768           97 Y-PEALIEMNPPFFSQFTLVVATQLG--EEKMIKLDRICREAN-VMLIF  141 (456)
Q Consensus        97 ~-~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~-ip~i~  141 (456)
                      . ++.+    ...++++|+||.+...  ......+.+.|++.+ ++-+.
T Consensus        66 ~d~~~l----~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           66 DDHASL----VEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             TCHHHH----HHHHHTCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             CCHHHH----HHHHcCCCEEEECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence            1 1111    2235578999976543  233456777888877 65443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=90.56  E-value=1.5  Score=40.85  Aligned_cols=97  Identities=16%  Similarity=0.202  Sum_probs=56.6

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC-h
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-P   98 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~-~   98 (456)
                      +|+|.| .|.+|+.+++.|...+-.++++++.+.-....+                         ..+.+++...+.. +
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------------------------~~~~v~~~~~D~~d~   56 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------------------------WRGKVSVRQLDYFNQ   56 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------------------------GBTTBEEEECCTTCH
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------------------------hhCCCEEEEcCCCCH
Confidence            699999 588999999999987445677776443211110                         1123443322211 1


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCC-------hHHHHHHHHHHHHcCC-eEEEEeecc
Q 012768           99 EALIEMNPPFFSQFTLVVATQLG-------EEKMIKLDRICREANV-MLIFARSYG  146 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~-------~~~~~~l~~~~~~~~i-p~i~~~~~G  146 (456)
                      +.+    ...++++|+||.+...       ......+.+.|++.++ .+|..++.|
T Consensus        57 ~~l----~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           57 ESM----VEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             HHH----HHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             HHH----HHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            111    2346688999865432       1234566778888886 477776644

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=90.53  E-value=0.61  Score=43.32  Aligned_cols=29  Identities=14%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|.|||+|.+|+.++++|...|. .++++|
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~   30 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL   30 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeC
Confidence            69999999999999999999997 566654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=90.49  E-value=0.061  Score=51.62  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=35.7

Q ss_pred             cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768            9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      |.......|..++|.|+|+|.+|..+|+.|...|. +++.+|...
T Consensus       112 w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  155 (290)
T 3gvx_A          112 FRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSS  155 (290)
T ss_dssp             CCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSC
T ss_pred             cccCCceeeecchheeeccCchhHHHHHHHHhhCc-EEEEEeccc
Confidence            44333345889999999999999999999999998 588888643

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=90.39  E-value=0.22  Score=47.90  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...+|.|||+|.+|..++++|...|. .++++|.+.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45689999999999999999999997 688888543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=90.19  E-value=1.4  Score=43.07  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .++..+|+|.| .|.+|..+++.|...|..+++++|..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL   66 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECC
Confidence            46667899999 48899999999999995578887643

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=90.14  E-value=1.3  Score=41.48  Aligned_cols=36  Identities=17%  Similarity=0.172  Sum_probs=27.8

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +-..++|+|.| .|.+|+.+++.|...|. +++++|..
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            34567899998 58899999999999994 67777754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.11  E-value=0.26  Score=50.69  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=28.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|.|||+|.+|+.++.+|+..|. .++++|.+.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            79999999999999999999997 589998643

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.09  E-value=0.87  Score=43.64  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=26.7

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +.+|+|.| .|++|..+++.|+..|. +++++|.
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r   37 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY-DVVIADN   37 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEec
Confidence            46899998 68899999999999996 4777663

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=90.05  E-value=2.2  Score=41.18  Aligned_cols=37  Identities=14%  Similarity=-0.003  Sum_probs=31.1

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+++.+|+|.| .|.+|+.+++.|...|. +++++|..
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   42 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT   42 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence            457788999999 68899999999999995 68887753

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.04  E-value=0.26  Score=47.12  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|+|+|+|.+|..+++.|...|. +++++|..
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~  187 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE  187 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            4778999999999999999999999998 79988843

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.02  E-value=1  Score=46.96  Aligned_cols=91  Identities=16%  Similarity=0.133  Sum_probs=60.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      .+|+|+|+|-+|..+|+.|...|.. ++++|.|.-....+.                          +.+.+...  +.+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~--------------------------~~i~gD~t--~~~  399 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQESPVCNDH--------------------------VVVYGDAT--VGQ  399 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCCSSCCSS--------------------------CEEESCSS--SST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECChHHHhhcC--------------------------CEEEeCCC--CHH
Confidence            7999999999999999999999975 899997653322211                          11111110  111


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCe-EEEE
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM-LIFA  142 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip-~i~~  142 (456)
                      .+.   ..-+.++|.+|++..+......+...+++.+.+ -+.+
T Consensus       400 ~L~---~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~~~iia  440 (565)
T 4gx0_A          400 TLR---QAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVA  440 (565)
T ss_dssp             HHH---HHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             HHH---hcCccccCEEEEECCCchHHHHHHHHHHHHCCCCEEEE
Confidence            111   123568999998887777777777888888764 3444

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=89.95  E-value=0.48  Score=44.23  Aligned_cols=58  Identities=10%  Similarity=0.097  Sum_probs=41.5

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEE
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF   93 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~   93 (456)
                      .|++++|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+...+..
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~   65 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRR-------------------EENVNETIKEIRAQYPDAILQP   65 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHHCTTCEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEE
Confidence            35677888888 58899999999999997 47777632                   2355566667777766555444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=89.95  E-value=1.6  Score=44.87  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=27.6

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|.| .|.+|+.+++.|...|. +++.++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            35899999 68899999999999997 67777643

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=89.92  E-value=0.41  Score=46.02  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=25.8

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCC
Q 012768           21 SVCLLNC-GPTGSETLKNLVLG-GIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~-Gv~~itlvD~d   52 (456)
                      +|+|.|+ |.+|+.+++.|... |. +++++|..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~   34 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIG   34 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            6999996 88999999999998 64 67777753

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=89.82  E-value=0.079  Score=51.44  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=35.8

Q ss_pred             cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768            9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      |.......|..++|.|||+|.+|..+|+.|...|. +++.+|...
T Consensus       129 W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~~  172 (315)
T 3pp8_A          129 WKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRSR  172 (315)
T ss_dssp             CCCCCCCCSTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESSC
T ss_pred             cCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCc
Confidence            54333356889999999999999999999999998 588887543

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=89.60  E-value=1.3  Score=43.47  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=27.9

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|.|+ |.+|..+++.|...|. +++++|.+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   62 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   62 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECC
Confidence            468999996 8899999999999995 68888754

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=89.60  E-value=1.7  Score=38.42  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=28.4

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      ..+|+|.| .|++|.++++.|...|. .++++++.+
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~   40 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   40 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            46899999 68899999999999997 478777643

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=89.58  E-value=0.28  Score=46.92  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|+|+|+|.+|..+++.|...|. +++++|..
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4778999999999999999999999998 79998843

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=89.55  E-value=0.45  Score=45.99  Aligned_cols=72  Identities=19%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ..+|+|||+|..|...++.|.. .++.+++++|.+                     |++..++.+.+.. .+.+...  +
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------------------~a~~la~~l~~~~-g~~~~~~--~  176 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------------------ASPEILERIGRRC-GVPARMA--A  176 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------------------CCHHHHHHHHHHH-TSCEEEC--C
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------------------HHHHHHHHHHHhc-CCeEEEe--C
Confidence            5789999999999999999986 478999998743                     3344445554321 2444333  2


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCC
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLG  121 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~  121 (456)
                      ...       .+.++|+||.|+.+
T Consensus       177 ~~e-------av~~aDIVi~aT~s  193 (313)
T 3hdj_A          177 PAD-------IAAQADIVVTATRS  193 (313)
T ss_dssp             HHH-------HHHHCSEEEECCCC
T ss_pred             HHH-------HHhhCCEEEEccCC
Confidence            222       24478999988754

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=89.42  E-value=1.2  Score=42.20  Aligned_cols=32  Identities=13%  Similarity=0.004  Sum_probs=26.9

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|.|+ |.+|..+++.|...| .+++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEcc
Confidence            468999996 889999999999999 46888774

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=89.42  E-value=0.3  Score=47.98  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +.||+|||+|..|..+|-.|.+.|+ +++|+|.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            3589999999999999999999999 49999854

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=89.42  E-value=1.5  Score=44.53  Aligned_cols=33  Identities=15%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|||+|.+|..+|.+|+..|. .++++|.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence            589999999999999999999996 688998654

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=89.39  E-value=1.6  Score=44.37  Aligned_cols=94  Identities=14%  Similarity=0.151  Sum_probs=55.9

Q ss_pred             cCcEEEEcCChh-HHHHHHHHHH--cCC--CcEEEEeCCcccccCCCccccccccccCcchHHHHH---HHH-HHhCCCC
Q 012768           19 KASVCLLNCGPT-GSETLKNLVL--GGI--GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC---AFL-QELNDAV   89 (456)
Q Consensus        19 ~~~VlIiG~ggl-G~eiaknLvl--~Gv--~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~---~~l-~~lnp~v   89 (456)
                      ..+|.|||+|++ |..++..|+.  .+.  ..++|+|-+.                 |+.|++.+.   +.+ ...+..+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~-----------------~~e~~~~~~~~~~~~~~~~~~~~   69 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPI   69 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC-----------------ChHHHHHHHHHHHHHHhhcCCCc
Confidence            468999999999 8888888887  565  6799998322                 223444422   222 3445566


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCCChH--HHHHHHHHHHHcCC
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEE--KMIKLDRICREANV  137 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~--~~~~l~~~~~~~~i  137 (456)
                      ++.... +.       .+.++++|+||.+.....  .+.+...+..++++
T Consensus        70 ~i~~t~-D~-------~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~  111 (450)
T 1s6y_A           70 EIHLTL-DR-------RRALDGADFVTTQFRVGGLEARAKDERIPLKYGV  111 (450)
T ss_dssp             EEEEES-CH-------HHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTC
T ss_pred             EEEEeC-CH-------HHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCc
Confidence            666532 11       123568999998765422  23344444455554

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=89.33  E-value=0.63  Score=43.96  Aligned_cols=30  Identities=23%  Similarity=0.299  Sum_probs=27.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .+|.|||+|.+|+.++++|...|. .++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence            479999999999999999999996 688887

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=89.22  E-value=0.92  Score=46.04  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=31.4

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +++++|+|+|.|+.|..+|+.|...|. .++..|...
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~   42 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKP   42 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence            567899999999999999999999995 588888543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=89.20  E-value=3.2  Score=34.70  Aligned_cols=39  Identities=21%  Similarity=0.356  Sum_probs=27.7

Q ss_pred             HHHHHHhcCcEEEEcC----ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           12 QGQAALEKASVCLLNC----GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        12 ~~q~~L~~~~VlIiG~----gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|-..++..+|.|||+    |.+|..+++||...|.. +.-+|+
T Consensus         7 ~~~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~-V~~vnp   49 (138)
T 1y81_A            7 HGSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNP   49 (138)
T ss_dssp             -------CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECT
T ss_pred             ccccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCE-EEEeCC
Confidence            4556778899999999    99999999999999984 555553

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=89.13  E-value=0.38  Score=43.92  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +...|+|||.|..|.++|..|.+.|. +++++|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            45789999999999999999999998 58999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=89.08  E-value=1.8  Score=42.55  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=28.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|.|||+|..|+.+|..|+..|. .++++|.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3589999999999999999999995 58888754

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=89.07  E-value=0.097  Score=51.03  Aligned_cols=44  Identities=16%  Similarity=0.265  Sum_probs=36.1

Q ss_pred             cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768            9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      |.......|..++|.|||+|.+|..+|+.|...|. +++.+|...
T Consensus       130 W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  173 (324)
T 3hg7_A          130 WQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG  173 (324)
T ss_dssp             CCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CcCCCCcccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCCh
Confidence            54333346889999999999999999999999998 588888654

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=89.00  E-value=1.2  Score=43.48  Aligned_cols=92  Identities=13%  Similarity=0.053  Sum_probs=53.0

Q ss_pred             HHhcCcEEEEcCChhHH-HHHHHHHHc-CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEE
Q 012768           16 ALEKASVCLLNCGPTGS-ETLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF   93 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~-eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~   93 (456)
                      .++.-+|.|||+|.+|. ..+..|... |+.-+.++|.+.                   .|++.+++..     .+..  
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~-------------------~~~~~~a~~~-----g~~~--   77 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRW-------------------DRAKRFTERF-----GGEP--   77 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSH-------------------HHHHHHHHHH-----CSEE--
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCH-------------------HHHHHHHHHc-----CCCC--
Confidence            45667899999999998 789999876 443334555322                   3444444333     2332  


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      . .+.+++.+.     .+.|+|+.|+.+. ....+...|.+.|++++
T Consensus        78 ~-~~~~~ll~~-----~~~D~V~i~tp~~-~h~~~~~~al~aGk~Vl  117 (350)
T 3rc1_A           78 V-EGYPALLER-----DDVDAVYVPLPAV-LHAEWIDRALRAGKHVL  117 (350)
T ss_dssp             E-ESHHHHHTC-----TTCSEEEECCCGG-GHHHHHHHHHHTTCEEE
T ss_pred             c-CCHHHHhcC-----CCCCEEEECCCcH-HHHHHHHHHHHCCCcEE
Confidence            2 233333211     2578888877553 34455556677777643

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=88.95  E-value=0.23  Score=47.34  Aligned_cols=32  Identities=9%  Similarity=0.256  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ++.++|+|+|+||+|..+++.|+..|  +++++|
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~  157 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIAN  157 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEEC
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEE
Confidence            56789999999999999999999999  899986

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=88.95  E-value=1  Score=42.50  Aligned_cols=99  Identities=17%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEEec
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEE   96 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~~~   96 (456)
                      ..+|+|.|+ |.+|..+++.|...| .++++++.+.-.              ....|++    .+.++ .+.+++...+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~--------------~~~~~~~----~~~~~~~~~~~~~~~D~   64 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVV--------------SNIDKVQ----MLLYFKQLGAKLIEASL   64 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCS--------------SCHHHHH----HHHHHHTTTCEEECCCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcc--------------cchhHHH----HHHHHHhCCeEEEeCCC
Confidence            368999995 889999999999999 467776533210              0001222    22222 34555432221


Q ss_pred             C-hhhhhcCCcCCCCCCcEEEEcCC------ChHHHHHHHHHHHHcC-CeEE
Q 012768           97 Y-PEALIEMNPPFFSQFTLVVATQL------GEEKMIKLDRICREAN-VMLI  140 (456)
Q Consensus        97 ~-~~~~~~~~~~~~~~~dvVi~~~~------~~~~~~~l~~~~~~~~-ip~i  140 (456)
                      . ++.+    ...++++|+||.+..      +......+.+.|++.+ ++-+
T Consensus        65 ~d~~~l----~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~  112 (313)
T 1qyd_A           65 DDHQRL----VDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRF  112 (313)
T ss_dssp             SCHHHH----HHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEE
T ss_pred             CCHHHH----HHHHhCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceE
Confidence            1 1111    234568999996542      2334566778888887 6544

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=88.93  E-value=1.5  Score=42.93  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHH-H-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEE
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLV-L-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF   93 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLv-l-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~   93 (456)
                      .++.-+|.|||+|.+|...+++|. . .|+.-+.++|.+                   ..|++.+++.+   +..+.  .
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~-------------------~~~~~~~a~~~---g~~~~--~   75 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV-------------------AGRAQAALDKY---AIEAK--D   75 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSS-------------------TTHHHHHHHHH---TCCCE--E
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCC-------------------HHHHHHHHHHh---CCCCe--e
Confidence            345668999999999999999998 4 455444456532                   23554444332   21122  2


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      .. +.+++.+.     .+.|+|+.|+.+ .....+...|.+.|++++
T Consensus        76 ~~-~~~~ll~~-----~~~D~V~i~tp~-~~h~~~~~~al~aGk~Vl  115 (357)
T 3ec7_A           76 YN-DYHDLIND-----KDVEVVIITASN-EAHADVAVAALNANKYVF  115 (357)
T ss_dssp             ES-SHHHHHHC-----TTCCEEEECSCG-GGHHHHHHHHHHTTCEEE
T ss_pred             eC-CHHHHhcC-----CCCCEEEEcCCc-HHHHHHHHHHHHCCCCEE
Confidence            22 22233211     146888877654 333445556666676643

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=88.73  E-value=0.37  Score=48.74  Aligned_cols=40  Identities=15%  Similarity=0.374  Sum_probs=36.4

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCC--CcEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGI--GSITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv--~~itlvD~d~v   54 (456)
                      ++|++.+|++.|+|+.|.-+++.|+..|+  ++|.++|..-+
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gl  256 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGS  256 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecccc
Confidence            46899999999999999999999999999  89999997643

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=88.73  E-value=1.4  Score=42.30  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      ||+|+|+ |.+|+.++..|+..|. ..+.++|.
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            7999998 9999999999998886 44888883

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=88.66  E-value=0.28  Score=48.53  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|.|||+|.+|..+|+.|...|..++..+|..
T Consensus       161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~  197 (364)
T 2j6i_A          161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ  197 (364)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSS
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            5889999999999999999999999997668888743

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=88.51  E-value=1  Score=43.20  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=28.6

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+...+|+|.| .|++|..+++.|+..| .+++++|..
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~   54 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNF   54 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECC
Confidence            45667899998 6889999999999999 578888754

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=88.48  E-value=1  Score=43.28  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d   52 (456)
                      ..+|.|+|+|.+|+-++..|+..|.. .++|+|-+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~   48 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLS   48 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            36899999999999999999999964 59999843

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.47  E-value=0.52  Score=46.00  Aligned_cols=36  Identities=22%  Similarity=0.317  Sum_probs=31.6

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..|+..+|.|||+|.+|..++++|...|. +++++|.
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~   47 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLR   47 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEEC
Confidence            46788899999999999999999999997 5777764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=88.45  E-value=0.4  Score=46.59  Aligned_cols=32  Identities=25%  Similarity=0.488  Sum_probs=28.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|+|+|++|+.++..|..+|. .++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4689999999999999999999996 6888873

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=88.40  E-value=0.78  Score=43.68  Aligned_cols=102  Identities=10%  Similarity=0.008  Sum_probs=57.1

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ..+|+|.|+ |.+|..+++.|...| .++++++.+.-+     .        -...+++.+. .+.  .+.+++...+..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~-----~--------~~~~~~~~l~-~~~--~~~v~~v~~D~~   66 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTP-----D--------STPSSVQLRE-EFR--SMGVTIIEGEME   66 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCT-----T--------CCHHHHHHHH-HHH--HTTCEEEECCTT
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCccc-----c--------cChHHHHHHH-Hhh--cCCcEEEEecCC
Confidence            357999995 889999999999999 467777643100     0        0001222221 122  234554332211


Q ss_pred             -hhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcC-CeEEE
Q 012768           98 -PEALIEMNPPFFSQFTLVVATQLG--EEKMIKLDRICREAN-VMLIF  141 (456)
Q Consensus        98 -~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~-ip~i~  141 (456)
                       ++.+    ...+++.|+||.+...  ......+.+.|.+.+ ++-+.
T Consensus        67 d~~~l----~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           67 EHEKM----VSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             CHHHH----HHHHTTCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             CHHHH----HHHHcCCCEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence             1111    2345679999976543  233456777888877 65443

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=88.39  E-value=1.8  Score=41.39  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=27.1

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|.| .|.+|+.+++.|...|. +++++|.+
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   46 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRP   46 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecC
Confidence            3799999 58899999999999994 68888754

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=88.37  E-value=2.2  Score=43.04  Aligned_cols=98  Identities=10%  Similarity=0.109  Sum_probs=55.1

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCCEEE
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVKAK   92 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v~v~   92 (456)
                      ..++.-+|.|||+|.+|...+..|... |+.=+.++|.                   ...|++.+++.+.+.+ |.+.+ 
T Consensus        16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~-------------------~~~~~~~~a~~~~~~g~~~~~~-   75 (444)
T 2ixa_A           16 FNPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP-------------------DPYMVGRAQEILKKNGKKPAKV-   75 (444)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS-------------------CHHHHHHHHHHHHHTTCCCCEE-
T ss_pred             CCCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeC-------------------CHHHHHHHHHHHHhcCCCCCce-
Confidence            345567899999999999999988764 4433344442                   2346666666665543 33332 


Q ss_pred             EEec---ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeE
Q 012768           93 FIEE---YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVML  139 (456)
Q Consensus        93 ~~~~---~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~  139 (456)
                       ...   +.+++.+.     .+.|+|+.++.+. ....+...|.+.++.+
T Consensus        76 -~~~~~~~~~~ll~~-----~~vD~V~i~tp~~-~h~~~~~~al~aGkhV  118 (444)
T 2ixa_A           76 -FGNGNDDYKNMLKD-----KNIDAVFVSSPWE-WHHEHGVAAMKAGKIV  118 (444)
T ss_dssp             -ECSSTTTHHHHTTC-----TTCCEEEECCCGG-GHHHHHHHHHHTTCEE
T ss_pred             -eccCCCCHHHHhcC-----CCCCEEEEcCCcH-HHHHHHHHHHHCCCeE
Confidence             220   22222211     1578888776543 3344555566667653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=88.36  E-value=0.32  Score=48.25  Aligned_cols=38  Identities=26%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..+...+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus        22 ~~~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           22 NLLSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             -CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             cccCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            33556789999999999999999999998 699999753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=88.29  E-value=0.32  Score=47.28  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..+|+|||+|..|..+|..|.+.|..+++|+|.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            46899999999999999999999976799999764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=88.26  E-value=2.4  Score=38.32  Aligned_cols=35  Identities=23%  Similarity=0.146  Sum_probs=28.1

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHcC-CCcEEEEeCC
Q 012768           18 EKASVCLLN-CGPTGSETLKNLVLGG-IGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG-~gglG~eiaknLvl~G-v~~itlvD~d   52 (456)
                      ...+|+|.| .|++|..+++.|+..| -.++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            356899998 6889999999999995 3467777754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=88.26  E-value=0.42  Score=45.67  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=28.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999996 68898844

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=88.21  E-value=1.9  Score=43.99  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=55.2

Q ss_pred             hcCcEEEEcCChh-HHHHHHHHHHc--CC--CcEEEEeCCcccccCCCccccccccccCcchHHHHH----HHHHHhCCC
Q 012768           18 EKASVCLLNCGPT-GSETLKNLVLG--GI--GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC----AFLQELNDA   88 (456)
Q Consensus        18 ~~~~VlIiG~ggl-G~eiaknLvl~--Gv--~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~----~~l~~lnp~   88 (456)
                      ++.+|.|||+|++ |..++..|+..  +.  ..++|+|-+.                   .|++.+.    ..+......
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~-------------------e~~~~~~~~~~~~l~~~~~~   87 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-------------------ERQDRIAGACDVFIREKAPD   87 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-------------------HHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCC
Confidence            3458999999998 67788888887  66  5699998432                   2333222    222345556


Q ss_pred             CEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChH--HHHHHHHHHHHcCC
Q 012768           89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEE--KMIKLDRICREANV  137 (456)
Q Consensus        89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~--~~~~l~~~~~~~~i  137 (456)
                      .++.... +.       .+.++++|+||.+.....  .+.+-..+..++++
T Consensus        88 ~~I~~t~-D~-------~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~  130 (472)
T 1u8x_X           88 IEFAATT-DP-------EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGV  130 (472)
T ss_dssp             SEEEEES-CH-------HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             CEEEEEC-CH-------HHHHcCCCEEEEcCCCccccccchhhhhhhhcCc
Confidence            6666532 11       123568999998765422  23333344555554

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=88.21  E-value=1.2  Score=42.06  Aligned_cols=96  Identities=14%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHH-cCCCcEEEEeCCcc--cccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768           19 KASVCLLNC-GPTGSETLKNLVL-GGIGSITVIDGSKV--EVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFI   94 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl-~Gv~~itlvD~d~v--~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~   94 (456)
                      +-+|.|+|+ |.+|..+++.+.. .|+.=+-++|.+.-  ...|++..       .|..+            ..+.+  .
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~-------~g~~~------------~~v~~--~   63 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGEL-------AGAGK------------TGVTV--Q   63 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCS-------SSSSC------------CSCCE--E
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHH-------cCCCc------------CCcee--c
Confidence            458999998 8999999999874 45432335664321  11122111       01000            01221  1


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEee
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS  144 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~  144 (456)
                      + +       -.+.+.+.|+||..+.+ .....+...|.+++++++.+.+
T Consensus        64 ~-d-------l~~~l~~~DvVIDft~p-~~~~~~~~~a~~~G~~vVigTt  104 (273)
T 1dih_A           64 S-S-------LDAVKDDFDVFIDFTRP-EGTLNHLAFCRQHGKGMVIGTT  104 (273)
T ss_dssp             S-C-------STTTTTSCSEEEECSCH-HHHHHHHHHHHHTTCEEEECCC
T ss_pred             C-C-------HHHHhcCCCEEEEcCCh-HHHHHHHHHHHhCCCCEEEECC
Confidence            1 1       12345578999977644 4556778899999999665443

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=88.03  E-value=1.2  Score=42.37  Aligned_cols=96  Identities=15%  Similarity=0.079  Sum_probs=55.4

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC-
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-   97 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~-   97 (456)
                      .+|+|.|+ |.+|..+++.|...|. ++++++.+.-                  .+++.+ +.+..  +.+++...+.. 
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~------------------~~~~~~-~~l~~--~~v~~v~~Dl~d   69 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPNS------------------SKTTLL-DEFQS--LGAIIVKGELDE   69 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTTC------------------SCHHHH-HHHHH--TTCEEEECCTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCCC------------------chhhHH-HHhhc--CCCEEEEecCCC
Confidence            58999995 8899999999999994 5777653210                  122211 11222  34554332211 


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcC-CeEEE
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLG--EEKMIKLDRICREAN-VMLIF  141 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~-ip~i~  141 (456)
                      ++.+    ...+++.|+||.+...  ......+.+.|++.+ ++-+.
T Consensus        70 ~~~l----~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           70 HEKL----VELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             HHHH----HHHHTTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEE
T ss_pred             HHHH----HHHHcCCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEE
Confidence            1111    2345678999976542  233456777888877 65443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=87.92  E-value=0.45  Score=47.29  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...|+|||+|..|..+|..|.+.|+.+++|+|...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            56899999999999999999999997699999654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=87.92  E-value=0.5  Score=47.34  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=32.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ...|+|||+|..|..+|..|++.|..+++|+|....
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            468999999999999999999999978999998765

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=87.92  E-value=0.21  Score=48.94  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=32.3

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  203 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRS  203 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            36889999999999999999999999998 57777743

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=87.89  E-value=0.58  Score=43.75  Aligned_cols=104  Identities=12%  Similarity=0.044  Sum_probs=57.4

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|+|.| .|.+|+.+++.|...|. +++.++...              .|+.  ..+.+.+.+.+..+++-++.-.....
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~--------------~D~~--d~~~~~~~~~~~~~d~vi~~a~~~~~   69 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDKKL--------------LDIT--NISQVQQVVQEIRPHIIIHCAAYTKV   69 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTE-EEEEECTTT--------------SCTT--CHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEecccc--------------cCCC--CHHHHHHHHHhcCCCEEEECCcccCh
Confidence            799999 58899999999999985 688877521              2222  22344455554444443332111000


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      .....      ..+-.+  ..+......+.+.|++.++.+|..++.+.+|
T Consensus        70 ~~~~~------~~~~~~--~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~  111 (287)
T 3sc6_A           70 DQAEK------ERDLAY--VINAIGARNVAVASQLVGAKLVYISTDYVFQ  111 (287)
T ss_dssp             HHHTT------CHHHHH--HHHTHHHHHHHHHHHHHTCEEEEEEEGGGSC
T ss_pred             HHHhc------CHHHHH--HHHHHHHHHHHHHHHHcCCeEEEEchhhhcC
Confidence            00000      000000  0011223456778888888999998877765

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=87.87  E-value=0.43  Score=44.81  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|+|+|+|.+|+.++..|...|. .++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            69999999999999999999996 799998654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=87.86  E-value=2.8  Score=42.87  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...+|+|||+|.+|..+|..|+..|. .++++|.+.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            46789999999999999999999997 599998653

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=87.71  E-value=3.2  Score=42.46  Aligned_cols=92  Identities=12%  Similarity=0.203  Sum_probs=53.1

Q ss_pred             cCcEEEEcCChh--HHHHHHHHHHc-C--CCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH----HHHhCCCC
Q 012768           19 KASVCLLNCGPT--GSETLKNLVLG-G--IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF----LQELNDAV   89 (456)
Q Consensus        19 ~~~VlIiG~ggl--G~eiaknLvl~-G--v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~----l~~lnp~v   89 (456)
                      ..+|.|||+|++  |+.+|..|+.. +  ...++|+|-+.                   .|++.+...    +.......
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~-------------------e~l~~~~~~~~~~l~~~~~~~   63 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE-------------------ERLDAILTIAKKYVEEVGADL   63 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH-------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCCc
Confidence            568999999996  67778888753 3  46799998432                   233332222    22334445


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHH--HHHHHHHHHHcCC
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEK--MIKLDRICREANV  137 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~--~~~l~~~~~~~~i  137 (456)
                      +++... +.       .+.++++|+||.+......  +..-.++..+.++
T Consensus        64 ~I~~tt-D~-------~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~  105 (480)
T 1obb_A           64 KFEKTM-NL-------DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGY  105 (480)
T ss_dssp             EEEEES-CH-------HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEC-CH-------HHHhCCCCEEEECCCccccccccccccccccccc
Confidence            555432 11       1235689999988754332  3333445556554

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=87.69  E-value=0.43  Score=47.37  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~  199 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDI  199 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            5789999999999999999999999999 7999884

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=87.68  E-value=0.47  Score=47.07  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=31.3

Q ss_pred             HHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           14 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        14 q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+..+..+|+|||+|..|..+|..|.+.|+ +++|+|.+.
T Consensus        18 ~~~~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           18 LYFQGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            445667899999999999999999999998 599999764

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=87.57  E-value=2.7  Score=39.73  Aligned_cols=32  Identities=25%  Similarity=0.220  Sum_probs=25.9

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|.| .|.+|+.+++.|...|. ++++++.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~r   35 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   35 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEec
Confidence            46899999 58899999999999986 4666553

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=87.51  E-value=0.57  Score=42.42  Aligned_cols=32  Identities=22%  Similarity=0.246  Sum_probs=27.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|+|+|.+|..+++.|...|. +++++|.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r   59 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSR   59 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3689999999999999999999996 5888774

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=87.42  E-value=0.46  Score=46.84  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++..+|+|+|+|++|..++..+...|. +++++|.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr  198 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDI  198 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            667899999999999999999999999 8999874

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=87.39  E-value=1.3  Score=40.21  Aligned_cols=87  Identities=13%  Similarity=0.090  Sum_probs=49.4

Q ss_pred             cCcEEEEcCChhHHHHHHH--HHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           19 KASVCLLNCGPTGSETLKN--LVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiakn--Lvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ..+|+|+|+|.+|..+++.  ....|+.=+-++|.|.-..              |+.           + ..+.+...+ 
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~--------------g~~-----------i-~gv~V~~~~-  137 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKI--------------GTE-----------V-GGVPVYNLD-  137 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTT--------------TCE-----------E-TTEEEEEGG-
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHH--------------HhH-----------h-cCCeeechh-
Confidence            3689999999999999994  3355777778888654211              110           0 013333211 


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      ....       .++..|+|+.|..+. ....+.+.|.+.++.-|
T Consensus       138 dl~e-------li~~~D~ViIAvPs~-~~~ei~~~l~~aGi~~I  173 (215)
T 2vt3_A          138 DLEQ-------HVKDESVAILTVPAV-AAQSITDRLVALGIKGI  173 (215)
T ss_dssp             GHHH-------HCSSCCEEEECSCHH-HHHHHHHHHHHTTCCEE
T ss_pred             hHHH-------HHHhCCEEEEecCch-hHHHHHHHHHHcCCCEE
Confidence            1111       222338998887653 34577888888888744

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=87.25  E-value=1.7  Score=42.32  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=25.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc--CCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG--GIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~--Gv~~itlvD   50 (456)
                      ..+|.|||+|.+|...++.|...  |+.-+.++|
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d   46 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCD   46 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            45899999999999999999987  444444665

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=87.22  E-value=1.7  Score=43.25  Aligned_cols=110  Identities=12%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh---------CCCC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL---------NDAV   89 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l---------np~v   89 (456)
                      .+|+|.|+ |++|+++++.|...|. ++++++...-                .....+.+.+.+.+.         .+.+
T Consensus        70 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~----------------~~~~~~~l~~~l~~~~~~~~~~~~~~~v  132 (427)
T 4f6c_A           70 GNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN----------------EEIAWYKLMTNLNDYFSEETVEMMLSNI  132 (427)
T ss_dssp             EEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSS----------------HHHHHHHHHHHHHHHSCHHHHHHHHTTE
T ss_pred             CEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCC----------------hHHHHHHHHHHHHHhccccccccccCce
Confidence            37999995 8899999999977765 5666542110                000122222333332         2334


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCCCh--------------HHHHHHHHHHHHcCCeEEEEeeccceeeE
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGE--------------EKMIKLDRICREANVMLIFARSYGLTGFV  151 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~--------------~~~~~l~~~~~~~~ip~i~~~~~G~~G~v  151 (456)
                      .  .+..+..+.  .....+.+.|+||.+....              .....+.+.|.+....+|..++.+. |..
T Consensus       133 ~--~v~~Dl~d~--~~l~~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~~  203 (427)
T 4f6c_A          133 E--VIVGDFECM--DDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTY  203 (427)
T ss_dssp             E--EEEECC-----CCCCCSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GSE
T ss_pred             E--EEeCCCCCc--ccCCCcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CCC
Confidence            3  333322111  1111456899999653211              1124455677776678898888877 654

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=87.19  E-value=3.5  Score=40.27  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             CcEEEEc-CChhHHHHHHHHH-HcCCCcEEEEeCC
Q 012768           20 ASVCLLN-CGPTGSETLKNLV-LGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLv-l~Gv~~itlvD~d   52 (456)
                      .+|+|.| .|.+|+.+++.|+ ..|. +++++|..
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~   36 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSL   36 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecC
Confidence            4799998 5889999999999 9995 67777743

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=87.15  E-value=0.5  Score=44.87  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=27.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|+|+|+|.+|+.++..|...|. .++++|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r   34 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQ   34 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEEC
Confidence            479999999999999999999996 6888874

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=87.13  E-value=0.55  Score=44.20  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGI   43 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv   43 (456)
                      ++..+|+|.| .|.+|+.+++.|...|.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            4567899999 58899999999999986

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=87.13  E-value=0.53  Score=45.50  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGI---GSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD~   51 (456)
                      +...+|.|||+|.+|+.++.+|...|+   ..++++|.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r   57 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSP   57 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECC
Confidence            444689999999999999999999995   57888863

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=87.11  E-value=0.2  Score=49.16  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..|..++|.|||+|.+|..+|+.|...|. +++.+|...
T Consensus       144 ~~l~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~~  181 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVAY  181 (343)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cccCCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCCh
Confidence            35889999999999999999999999998 588888543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=87.11  E-value=0.57  Score=45.77  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=31.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ...|+|||.|..|+.+|..|++.|.+ ++|+|...+
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~   39 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFI   39 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSST
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCC
Confidence            46899999999999999999999985 999997654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=87.08  E-value=0.54  Score=45.34  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=28.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|+|+|++|+.++..|..+|. .++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            589999999999999999999995 78888754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=87.06  E-value=0.53  Score=45.24  Aligned_cols=32  Identities=13%  Similarity=0.117  Sum_probs=28.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|+|+|++|+.++..|..+|. .++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence            589999999999999999999995 68888754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=87.03  E-value=0.55  Score=45.67  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE   55 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~   55 (456)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|...+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4689999999999999999999997 69999976543

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=87.03  E-value=2.6  Score=40.04  Aligned_cols=106  Identities=13%  Similarity=0.159  Sum_probs=55.4

Q ss_pred             HHHHHHhc-CcEEEEc-CChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-C
Q 012768           12 QGQAALEK-ASVCLLN-CGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-D   87 (456)
Q Consensus        12 ~~q~~L~~-~~VlIiG-~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p   87 (456)
                      ++|..+.. -||.|+| +|.+|..+++.+.. .++.=+-++|...-   +      ....|+|.         +..+. .
T Consensus        13 ~~~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~---~------~~G~d~ge---------l~G~~~~   74 (288)
T 3ijp_A           13 EAQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS---S------FVDKDASI---------LIGSDFL   74 (288)
T ss_dssp             --------CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC---T------TTTSBGGG---------GTTCSCC
T ss_pred             hhhhhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---c------ccccchHH---------hhccCcC
Confidence            45554443 4899999 89999999998874 34433334453210   0      01112221         00111 1


Q ss_pred             CCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           88 AVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        88 ~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      .+.   +..+.+       +.+.++|+||..+.+ .........|.++++|+|. ++.|+
T Consensus        75 gv~---v~~dl~-------~ll~~aDVvIDFT~p-~a~~~~~~~~l~~Gv~vVi-GTTG~  122 (288)
T 3ijp_A           75 GVR---ITDDPE-------SAFSNTEGILDFSQP-QASVLYANYAAQKSLIHII-GTTGF  122 (288)
T ss_dssp             SCB---CBSCHH-------HHTTSCSEEEECSCH-HHHHHHHHHHHHHTCEEEE-CCCCC
T ss_pred             Cce---eeCCHH-------HHhcCCCEEEEcCCH-HHHHHHHHHHHHcCCCEEE-ECCCC
Confidence            222   111222       234578999988754 4455667789999999774 44554

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=86.96  E-value=0.77  Score=44.81  Aligned_cols=31  Identities=13%  Similarity=0.095  Sum_probs=26.5

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|+|.| .|.+|..+++.|...|.-.++.+|.
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~   33 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHR   33 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence            699999 6889999999999999856777664

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=86.95  E-value=1.8  Score=40.20  Aligned_cols=98  Identities=17%  Similarity=0.187  Sum_probs=57.2

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHc--CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLG--GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~--Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      .+|+|.|+ |.+|+.+++.|...  | .++++++.+.-                   ++.    .+..  +.+++...+.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~-------------------~~~----~l~~--~~~~~~~~D~   54 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVE-------------------KAS----TLAD--QGVEVRHGDY   54 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCTT-------------------TTH----HHHH--TTCEEEECCT
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCHH-------------------HHh----HHhh--cCCeEEEecc
Confidence            36899995 88999999999988  7 46777764210                   111    1111  2344322221


Q ss_pred             C-hhhhhcCCcCCCCCCcEEEEcCC-------ChHHHHHHHHHHHHcCC-eEEEEeeccc
Q 012768           97 Y-PEALIEMNPPFFSQFTLVVATQL-------GEEKMIKLDRICREANV-MLIFARSYGL  147 (456)
Q Consensus        97 ~-~~~~~~~~~~~~~~~dvVi~~~~-------~~~~~~~l~~~~~~~~i-p~i~~~~~G~  147 (456)
                      . ++.+    .+.++++|+||.+..       +......+.+.|++.++ .+|..++.+.
T Consensus        55 ~d~~~l----~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~  110 (287)
T 2jl1_A           55 NQPESL----QKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAFA  110 (287)
T ss_dssp             TCHHHH----HHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETTG
T ss_pred             CCHHHH----HHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence            1 1111    233567899985532       22334566678888876 6777777654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=86.89  E-value=1  Score=44.28  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+|+|+|+|++|..++.-+...|.++++.+|
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  214 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGATTVILST  214 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            57899999999999999999999998888886

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=86.87  E-value=0.5  Score=44.99  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|+|+|++|+.++..|..+|. .++++|.+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            589999999999999999999995 79999865

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=86.86  E-value=2.8  Score=39.92  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=26.2

Q ss_pred             cEEEEc-CChhHHHHHHHHHHc---CC--CcEEEEeCC
Q 012768           21 SVCLLN-CGPTGSETLKNLVLG---GI--GSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~---Gv--~~itlvD~d   52 (456)
                      +|+|.| .|.+|+.+++.|...   |+  .+++++|..
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~   39 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL   39 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECC
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence            699998 688999999999996   53  578888743

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=86.81  E-value=1.7  Score=41.86  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=28.1

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      ||+|+|+ |.+|..++..|+..|. ..++++|-+
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~   35 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCC
Confidence            7999998 9999999999998885 669999844

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=86.80  E-value=3.7  Score=39.20  Aligned_cols=32  Identities=31%  Similarity=0.370  Sum_probs=27.0

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEec
Confidence            35899998 58899999999999995 5777764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=86.72  E-value=0.48  Score=46.26  Aligned_cols=35  Identities=11%  Similarity=0.164  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ...|+|||.|..|..+|..|++.|. +++|+|...+
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~   51 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTM   51 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence            4689999999999999999999998 6999997654

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=86.69  E-value=2.3  Score=45.43  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=27.8

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..++..+|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus         7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~-~V~~~~r   43 (699)
T 1z45_A            7 SESTSKIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   43 (699)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            456778999998 58899999999999995 6777764

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=86.64  E-value=2.2  Score=40.68  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=26.1

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|+|.| .|.+|+.+++.|...|. +++++|.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeC
Confidence            3799999 68899999999999995 5777763

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=86.60  E-value=1.2  Score=43.06  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ...+|+|.|+|++|.-.+..+...|...++.+|.
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~  193 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec
Confidence            4678999999999999999999999999888873

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=86.60  E-value=4.9  Score=38.34  Aligned_cols=75  Identities=13%  Similarity=0.084  Sum_probs=43.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ...+||.||||+.|.. +..|++ .| .+++-+|.+                   ....+.+++++.+..- -+++.+..
T Consensus       122 ~g~rVLDIGcG~G~~t-a~~lA~~~g-a~V~gIDis-------------------~~~l~~Ar~~~~~~gl-~~v~~v~g  179 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLT-GILLSHVYG-MRVNVVEIE-------------------PDIAELSRKVIEGLGV-DGVNVITG  179 (298)
T ss_dssp             TTCEEEEECCCSSCHH-HHHHHHTTC-CEEEEEESS-------------------HHHHHHHHHHHHHHTC-CSEEEEES
T ss_pred             CcCEEEEECCCccHHH-HHHHHHccC-CEEEEEECC-------------------HHHHHHHHHHHHhcCC-CCeEEEEC
Confidence            4678999999964321 111333 45 468888733                   2355566666666543 34555555


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      +...+.      -..||+|+....
T Consensus       180 Da~~l~------d~~FDvV~~~a~  197 (298)
T 3fpf_A          180 DETVID------GLEFDVLMVAAL  197 (298)
T ss_dssp             CGGGGG------GCCCSEEEECTT
T ss_pred             chhhCC------CCCcCEEEECCC
Confidence            443331      247999997544

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=86.55  E-value=0.58  Score=46.27  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~   53 (456)
                      .+||+|||.|..|..+|+.|.+.|-+ +|||+|...
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            57999999999999999999999875 799998654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=86.46  E-value=0.55  Score=46.36  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+...+|+|+|+|++|..+++.+...|. +++++|.
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~  197 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDV  197 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            4778999999999999999999999998 7999873

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=86.35  E-value=1.5  Score=42.74  Aligned_cols=33  Identities=27%  Similarity=0.259  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|+|+|++|..++.-+...|.++++.+|.
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  204 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL  204 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            468999999999999999888899988888873

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=86.35  E-value=1.2  Score=40.73  Aligned_cols=33  Identities=15%  Similarity=0.151  Sum_probs=27.6

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |++++|+|.| .||+|.++++.|+..|. ++.++|
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~   36 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTA   36 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            5677888888 68899999999999997 477766

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=86.33  E-value=1.5  Score=41.76  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=28.0

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      +.+|+|.| .|++|..+++.|+..|- .+++++|..
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~   38 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKL   38 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            45799999 58899999999999984 468887753

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=86.31  E-value=0.86  Score=42.69  Aligned_cols=41  Identities=15%  Similarity=0.121  Sum_probs=28.8

Q ss_pred             cCHHHHH-HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768            9 WGEQGQA-ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus         9 wG~~~q~-~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|+..+. .|+++.|+|.| .||+|.++++.|+..|. ++.++|
T Consensus        17 ~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~   59 (270)
T 3ftp_A           17 QGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTA   59 (270)
T ss_dssp             ------CCTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            6665554 47777788887 68999999999999998 577766

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.28  E-value=1.3  Score=40.76  Aligned_cols=52  Identities=15%  Similarity=0.169  Sum_probs=38.2

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND   87 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp   87 (456)
                      .++++.|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+.++
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~   56 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARS-------------------KQNLEKVHDEIMRSNK   56 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESC-------------------HHHHHHHHHHHHHHCT
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhcc
Confidence            35677889998 58999999999999998 57777632                   2355666666666654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=86.08  E-value=0.57  Score=45.55  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=28.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +--|+|||+|..|+.+|..|++.|+. ++|+|.
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~-V~v~Er   35 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLK-TLMIEK   35 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc-EEEEeC
Confidence            34699999999999999999999985 889885

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=86.07  E-value=0.99  Score=42.10  Aligned_cols=34  Identities=12%  Similarity=0.023  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .+.+++|+|.| .|++|.++++.|+..|. +++++|
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~   62 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWD   62 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEE
Confidence            36778899998 68899999999999996 477776

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=86.01  E-value=0.65  Score=45.12  Aligned_cols=43  Identities=12%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             cCHHH-HHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768            9 WGEQG-QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus         9 wG~~~-q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |.... ...|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       126 W~~~~~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          126 WALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             SSCSSCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cccCCCCccccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            64432 346889999999999999999999999998 57888854

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=85.99  E-value=0.47  Score=46.69  Aligned_cols=42  Identities=24%  Similarity=0.326  Sum_probs=34.6

Q ss_pred             cCHHHH----HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768            9 WGEQGQ----AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus         9 wG~~~q----~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |.....    ..|..++|.|||+|.+|..+|+.|...|.. ++.+|.
T Consensus       150 W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~-V~~~dr  195 (351)
T 3jtm_A          150 WNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDR  195 (351)
T ss_dssp             CCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCE-EEEECS
T ss_pred             CccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCE-EEEeCC
Confidence            765433    248899999999999999999999999985 777764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=85.91  E-value=0.63  Score=45.96  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|+|+|+|.+|..+|+.|...|.+ +++.|.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~  204 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDV  204 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcC
Confidence            37789999999999999999999999985 778873

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=85.88  E-value=0.8  Score=42.58  Aligned_cols=34  Identities=15%  Similarity=0.079  Sum_probs=27.9

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .++|+|.| .|++|.++++.|+..|. +++++|.+.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~   37 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSP   37 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCC
Confidence            45799998 68899999999999995 577877543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=85.84  E-value=0.72  Score=42.99  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=29.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|+|||.|..|..+|..|.+.|. +++|+|...
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARK-NILLVDAGE   35 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            579999999999999999999997 799999653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=85.75  E-value=0.7  Score=46.03  Aligned_cols=30  Identities=17%  Similarity=0.302  Sum_probs=26.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHH-cCCCcEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVL-GGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD   50 (456)
                      .+|+|+|+|.+|+.+|..|+. +|. .++++|
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            379999999999999999998 485 688887

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=85.73  E-value=0.51  Score=45.22  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|||+|..|..+|..|.+.|. +++|+|..
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~   35 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGL-SYVILDAE   35 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSC-CEEEECCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            4689999999999999999999998 59999965

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=85.72  E-value=1.7  Score=42.06  Aligned_cols=88  Identities=11%  Similarity=0.167  Sum_probs=49.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           20 ASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      .+|.|||+|.+|...+++|... |+.-+.++|.+                   ..|++.+++   +.+  +.  ... +.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~a~---~~g--~~--~~~-~~   57 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPF-------------------IEGAQRLAE---ANG--AE--AVA-SP   57 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS-------------------HHHHHHHHH---TTT--CE--EES-SH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCC-------------------HHHHHHHHH---HcC--Cc--eeC-CH
Confidence            4899999999999999999875 44333355522                   123333322   222  32  222 33


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      +++...     .+.|+|+.++.+. ....+...|.+.+++++
T Consensus        58 ~~~l~~-----~~~D~V~i~tp~~-~h~~~~~~al~~gk~v~   93 (344)
T 3euw_A           58 DEVFAR-----DDIDGIVIGSPTS-THVDLITRAVERGIPAL   93 (344)
T ss_dssp             HHHTTC-----SCCCEEEECSCGG-GHHHHHHHHHHTTCCEE
T ss_pred             HHHhcC-----CCCCEEEEeCCch-hhHHHHHHHHHcCCcEE
Confidence            333211     1678998887553 33444556667776644

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=85.55  E-value=5.1  Score=38.63  Aligned_cols=31  Identities=19%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             CcEEEEcCChhHHHHHHHHH-H-cCCCcEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLV-L-GGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLv-l-~Gv~~itlvD   50 (456)
                      .+|.|||+|.+|...+++|. . .|+.-+.++|
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d   35 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTD   35 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEc
Confidence            47999999999999999998 4 4544344555

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=85.52  E-value=0.5  Score=45.95  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|....
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            3579999999999999999999997 6999997654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=85.51  E-value=0.68  Score=44.69  Aligned_cols=35  Identities=14%  Similarity=0.163  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDI  173 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5888999999999999999999999996 5777774

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=85.48  E-value=1.5  Score=42.28  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=26.7

Q ss_pred             cEEEEc-CChhHHHHHHHHHHc-CC-CcEEEEeC
Q 012768           21 SVCLLN-CGPTGSETLKNLVLG-GI-GSITVIDG   51 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~-Gv-~~itlvD~   51 (456)
                      +|.|+| +|.+|..++..|... +. ..++|+|-
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di   35 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI   35 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEec
Confidence            799999 899999999999875 54 57999984

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=85.48  E-value=0.71  Score=45.28  Aligned_cols=36  Identities=14%  Similarity=0.093  Sum_probs=30.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +...+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~   44 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSS   44 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            456789999999999999999999997 599999654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=85.45  E-value=0.67  Score=47.50  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |..++|+|+|+|++|..+|+.|...|. ++.++|.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            678899999999999999999999998 78888743

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=85.40  E-value=2.4  Score=40.29  Aligned_cols=35  Identities=9%  Similarity=0.137  Sum_probs=25.6

Q ss_pred             HhcCcEEEEcCChhHHH-HHHHHHH-cCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSE-TLKNLVL-GGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~e-iaknLvl-~Gv~~itlvD~   51 (456)
                      ++..+|.|||+|.+|.. .++.|.. .|+.-+.++|.
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~   40 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP   40 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECS
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECC
Confidence            45679999999999996 8888876 45444446663

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=85.37  E-value=0.61  Score=45.46  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..|..++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~  178 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRH  178 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSS
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            35889999999999999999999999996 58888743

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=85.28  E-value=0.79  Score=44.63  Aligned_cols=35  Identities=14%  Similarity=0.142  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI  177 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5889999999999999999999999997 5777774

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=85.20  E-value=0.66  Score=46.45  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +...+|+|+|+|++|..+++.+...|. +++++|...
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~  205 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRP  205 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            568999999999999999999999998 799998543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=85.14  E-value=0.7  Score=45.04  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|.|||+|.+|..+|+.|...|. +++++|..
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~  196 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRS  196 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5788999999999999999999999997 58888754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=85.14  E-value=1.8  Score=42.27  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+|+|+|+|++|..++..+-..|.+.+..+|
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  211 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGACPLVITD  211 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            57899999999999999999999999888887

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=85.12  E-value=0.67  Score=45.06  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~  187 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGR  187 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5888999999999999999999999997 58888843

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=85.08  E-value=0.69  Score=45.18  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ...|+|||+|..|+.+|..|++.|. +++|+|....
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence            3579999999999999999999997 5999997654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=85.07  E-value=0.83  Score=45.35  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~   53 (456)
                      +.+|+|||.|..|..+|..|.+.|.. ++|++|...
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~   36 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEK   36 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            36899999999999999999999985 899999866

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=84.99  E-value=0.78  Score=43.86  Aligned_cols=32  Identities=13%  Similarity=0.192  Sum_probs=28.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      -.++|.|||+|-.|+-+|.+|+ +|. .++++|.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~   42 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDV   42 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECS
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEEC
Confidence            3689999999999999999999 998 6888873

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=84.98  E-value=0.59  Score=43.86  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=32.2

Q ss_pred             HHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           11 EQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        11 ~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +..+..|++++|+|.| .||+|.++++.|+..|.. +.++|.+
T Consensus         2 p~~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~   43 (281)
T 3s55_A            2 PGSMADFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRC   43 (281)
T ss_dssp             ----CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCcccccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            4455678889999998 688999999999999975 8888754

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=84.92  E-value=0.82  Score=43.30  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=28.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|.|||+|.+|+.++++|...|. +++++|.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   35 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDL   35 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeC
Confidence            3589999999999999999999997 5888874

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=84.91  E-value=0.76  Score=44.33  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=32.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .|..++|.|||+|.+|..+|+.|...|. +++.+|...
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~  177 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTP  177 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            5888999999999999999999999996 588888543

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=84.90  E-value=0.67  Score=44.65  Aligned_cols=33  Identities=18%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...|+|||.|..|..+|..|++.|. +++|+|..
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~   36 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGH-EVLVAEAA   36 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            3579999999999999999999998 69999976

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.88  E-value=1.2  Score=41.58  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=31.7

Q ss_pred             HHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           14 QAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        14 q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +..|++++|+|.| .||+|.++++.|+..|.. +.++|..
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~   43 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDIC   43 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEccc
Confidence            3467888999998 678999999999999974 8888754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=84.85  E-value=1.3  Score=41.68  Aligned_cols=34  Identities=15%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~   53 (456)
                      ...+||++|||+ |.- +..+++ .|+.+++.+|-|.
T Consensus        75 ~~~~VLdiG~G~-G~~-~~~l~~~~~~~~v~~vEid~  109 (275)
T 1iy9_A           75 NPEHVLVVGGGD-GGV-IREILKHPSVKKATLVDIDG  109 (275)
T ss_dssp             SCCEEEEESCTT-CHH-HHHHTTCTTCSEEEEEESCH
T ss_pred             CCCEEEEECCch-HHH-HHHHHhCCCCceEEEEECCH
Confidence            457899999874 222 233333 4899999998443

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=84.84  E-value=0.75  Score=44.79  Aligned_cols=35  Identities=11%  Similarity=0.084  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|...+|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~  181 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSR  181 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECC
Confidence            5788999999999999999999999996 5888874

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=84.82  E-value=2  Score=41.49  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=24.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHH-H-cCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLV-L-GGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLv-l-~Gv~~itlvD   50 (456)
                      ..+|.|||+|.+|...++.|. . .|+.-+.++|
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d   41 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACA   41 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEec
Confidence            458999999999999999988 4 4554345555

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=84.79  E-value=5.3  Score=38.81  Aligned_cols=32  Identities=16%  Similarity=0.095  Sum_probs=27.3

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|.|+ |.+|+.+++.|+..|. +++++|..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecC
Confidence            57999995 8899999999999995 68887754

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=84.73  E-value=2  Score=39.87  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |+++.|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r   40 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCAR   40 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            5678899998 688999999999999985 777763

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=84.68  E-value=0.87  Score=41.91  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=30.1

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |++++|+|.| .||+|.++++.|+..|...+.++|.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r   38 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEec
Confidence            5677899998 6889999999999999877888763

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=84.66  E-value=0.72  Score=45.73  Aligned_cols=35  Identities=20%  Similarity=0.466  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      +..|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~~   39 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQKF   39 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCCC
Confidence            4689999999999999999999998 6999997753

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=84.66  E-value=0.77  Score=45.37  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   38 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   38 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            35689999999999999999999998 699998654

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=84.65  E-value=3.8  Score=39.31  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=24.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLG-GIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~   51 (456)
                      .+|.|||+|.+|...++.|... |+.-+.++|.
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~   36 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADA   36 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECC
Confidence            4899999999999999999875 5443345653

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=84.61  E-value=1.5  Score=40.73  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEE-EeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITV-IDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itl-vD~d   52 (456)
                      .||.|+|+|.+|..+++.+...+- .++- +|.+
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~   36 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENT   36 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSS
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecC
Confidence            589999999999999999998765 5554 5643

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=84.53  E-value=0.81  Score=44.53  Aligned_cols=38  Identities=13%  Similarity=0.084  Sum_probs=33.0

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..|..++|.|||+|.+|..+|+.|...|.. ++.+|...
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~  179 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGAT-VIGEDVFE  179 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCc
Confidence            358899999999999999999999999974 88888543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=84.53  E-value=0.87  Score=41.97  Aligned_cols=32  Identities=19%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC---CcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGI---GSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv---~~itlvD~   51 (456)
                      .+|.|||+|.+|..++++|...|.   ..++++|.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r   37 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDL   37 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeC
Confidence            589999999999999999999997   47888873

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=84.52  E-value=2.4  Score=41.25  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCC-Cc-----EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCCEE
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGI-GS-----ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVKA   91 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv-~~-----itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v~v   91 (456)
                      .+|+|+| +|.+|+.++-.|+..|+ +.     +.|+|-..                 .+.|++..+.-|.... |.+.-
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~-----------------~~~~~~g~a~DL~~~~~~~~~~   66 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP-----------------MMGVLDGVLMELQDCALPLLKD   66 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG-----------------GHHHHHHHHHHHHHTCCTTEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCC-----------------ccccchhhHhhhHhhhhcccCC
Confidence            4799999 79999999999999988 45     99998321                 1135666666676653 54421


Q ss_pred             EEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           92 KFIEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      .....       ...+.++++|+||.+.
T Consensus        67 ~~~~~-------~~~~~~~daDvVvitA   87 (333)
T 5mdh_A           67 VIATD-------KEEIAFKDLDVAILVG   87 (333)
T ss_dssp             EEEES-------CHHHHTTTCSEEEECC
T ss_pred             EEEcC-------CcHHHhCCCCEEEEeC
Confidence            11111       1123467899999764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=84.48  E-value=0.85  Score=43.08  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=27.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|.|||+|.+|+.++++|...|. +++++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~   32 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVF   32 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            69999999999999999999997 58888743

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=84.45  E-value=1.1  Score=45.45  Aligned_cols=103  Identities=11%  Similarity=0.131  Sum_probs=57.6

Q ss_pred             hcCcEEEEcCChh--HHHHHHHHHHcC--CCcEEEEeCCcccccCCCccccccccccCcchHHHH---HHHHHHhCCCCE
Q 012768           18 EKASVCLLNCGPT--GSETLKNLVLGG--IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV---CAFLQELNDAVK   90 (456)
Q Consensus        18 ~~~~VlIiG~ggl--G~eiaknLvl~G--v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~---~~~l~~lnp~v~   90 (456)
                      ++.+|.|||+|++  |..++..|+..-  .+.++|+|-+.                   .|++..   .+.+.+  ...+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~-------------------e~le~~~~~~~~l~~--~~~~   62 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDF-------------------EAAQKNEVIGNHSGN--GRWR   62 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSH-------------------HHHHHHHHHHTTSTT--SCEE
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCH-------------------HHHHHHHHHHHHHhc--cCCe
Confidence            4569999999997  689999888622  24899998442                   122111   111221  2344


Q ss_pred             EEEEecChhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768           91 AKFIEEYPEALIEMNPPFFSQFTLVVATQLG--EEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      ++... +.       .+.++++|+||.+...  .+.+..=-++.+++|+.=-.+.+.|..|
T Consensus        63 I~~Tt-D~-------~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GG  115 (450)
T 3fef_A           63 YEAVS-TL-------KKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGG  115 (450)
T ss_dssp             EEEES-SH-------HHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHH
T ss_pred             EEEEC-CH-------HHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCch
Confidence            44322 11       2346789999988743  3444433446677765211125555444

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=84.45  E-value=0.69  Score=46.48  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=30.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            689999999999999999999998 699999764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=84.36  E-value=0.85  Score=40.74  Aligned_cols=30  Identities=30%  Similarity=0.257  Sum_probs=26.8

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|+|+| +|.+|+.+++.|...|. +++++|.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r   32 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSR   32 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            699999 99999999999999996 6888774

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=84.35  E-value=1.7  Score=40.14  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r   39 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRR   39 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            35678899998 67899999999999998 5888763

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=84.33  E-value=4.2  Score=38.90  Aligned_cols=32  Identities=13%  Similarity=0.145  Sum_probs=25.4

Q ss_pred             cEEEEcCChhHHHH-HHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGPTGSET-LKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~ei-aknLvl~Gv~~itlvD~d   52 (456)
                      +|.|||+|.+|... ++.|...|+.-+.++|.+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~   34 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTS   34 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCC
Confidence            69999999999998 888888666545566643

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=84.31  E-value=0.74  Score=45.69  Aligned_cols=36  Identities=25%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +..++|+|+|+|.+|..+++.+...|. +++++|...
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~  217 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRP  217 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSG
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            477899999999999999999999998 699998554

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=84.23  E-value=0.87  Score=44.75  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +.+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3689999999999999999999998 599999654

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=84.15  E-value=1.3  Score=42.76  Aligned_cols=93  Identities=12%  Similarity=0.034  Sum_probs=53.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      -+|.|||+|+.|...++.| ..|+.=+.++|.+.-                  .+++.+++..++....++  ... +.+
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~------------------~~~~~~~~~~~~~~~~~~--~~~-~~~   60 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPE------------------EDLSKLEKAISEMNIKPK--KYN-NWW   60 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTT------------------CCCHHHHHHHHTTTCCCE--ECS-SHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCch------------------hhHHHHHHHHHHcCCCCc--ccC-CHH
Confidence            4899999999999888887 555544445553210                  234444455555443233  222 333


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      ++.+.     .+.|+|+.++.+ .....+...|.+.|++++
T Consensus        61 ~ll~~-----~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl   95 (337)
T 3ip3_A           61 EMLEK-----EKPDILVINTVF-SLNGKILLEALERKIHAF   95 (337)
T ss_dssp             HHHHH-----HCCSEEEECSSH-HHHHHHHHHHHHTTCEEE
T ss_pred             HHhcC-----CCCCEEEEeCCc-chHHHHHHHHHHCCCcEE
Confidence            33211     147888877644 445566677778887643

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=84.13  E-value=3  Score=38.81  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|+++.|+|.| .||+|.++++.|+..|. ++.++|..
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~   44 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIA   44 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEecc
Confidence            57788899998 68899999999999998 57788753

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=84.02  E-value=0.87  Score=43.78  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..|..++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~  174 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPY  174 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            35889999999999999999999999996 57777743

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=84.02  E-value=2.6  Score=39.05  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=28.7

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .|.+++|+|.| .||+|.++++.|+..|. ++.++|
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~   44 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVD   44 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            46778899998 68899999999999996 477765

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=84.01  E-value=0.97  Score=41.90  Aligned_cols=37  Identities=11%  Similarity=0.114  Sum_probs=29.9

Q ss_pred             HHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           14 QAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        14 q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +..+++++|+|.| .||+|.++++.|+..|.. +.++|.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r   61 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTAR   61 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEC
Confidence            3456778899998 689999999999999975 777763

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=84.00  E-value=6.7  Score=35.15  Aligned_cols=36  Identities=14%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...+++|+|+|+.|.+++..|...|..-+-++|++.
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~   46 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADP   46 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            345899999999999999999988888888999764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=83.96  E-value=0.94  Score=43.33  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|||+|.+|+.++++|...|. .++++|.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~   62 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRT   62 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            679999999999999999999997 58888754

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=83.96  E-value=2.7  Score=38.88  Aligned_cols=40  Identities=8%  Similarity=0.015  Sum_probs=32.9

Q ss_pred             HHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           14 QAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        14 q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      +-.+++++|+|.| .||+|.++++.|+..|. ++.++|.+.-
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   63 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIK   63 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChh
Confidence            4567788899998 68899999999999997 5888886543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=83.95  E-value=2.6  Score=39.33  Aligned_cols=36  Identities=11%  Similarity=0.139  Sum_probs=30.5

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      |+++.|+|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~   40 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSA   40 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccc
Confidence            5678899998 68899999999999997 688887554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=83.95  E-value=4.3  Score=38.68  Aligned_cols=34  Identities=12%  Similarity=0.034  Sum_probs=24.6

Q ss_pred             hcCcEEEEcCChhHHH-HHHHHHH-cCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSE-TLKNLVL-GGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~e-iaknLvl-~Gv~~itlvD~   51 (456)
                      +..+|.|||+|.+|.. +++.|.. .|+.-+.++|.
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~   39 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP   39 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECS
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECC
Confidence            3468999999999996 8898875 45443346664

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=83.84  E-value=0.85  Score=44.16  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDT  177 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5889999999999999999999998885 6888875

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=83.82  E-value=0.81  Score=48.25  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=32.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +....|+|||.|..|..+|..|++.|+ +++|+|.+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~   56 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSA   56 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCC
Confidence            556899999999999999999999998 699999874

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=83.81  E-value=2.4  Score=39.51  Aligned_cols=52  Identities=13%  Similarity=0.197  Sum_probs=39.6

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND   87 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp   87 (456)
                      .|+++.++|-| .+|+|.++|+.|+..|.. +.++|.+                   ..+++.+++.+++...
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~~-------------------~~~~~~~~~~i~~~g~   56 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVELL-------------------EDRLNQIVQELRGMGK   56 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECC-------------------HHHHHHHHHHHHhcCC
Confidence            47888888888 689999999999999984 7777732                   2366667777766554

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=83.78  E-value=4.3  Score=38.01  Aligned_cols=34  Identities=18%  Similarity=0.285  Sum_probs=27.1

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHc-CCCcEEEEeCC
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLG-GIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~-Gv~~itlvD~d   52 (456)
                      +.+|+|.|+ |.+|+.+++.|... |-.+++++|..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   37 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIR   37 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            368999996 88999999999998 33468887743

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=83.78  E-value=0.26  Score=48.50  Aligned_cols=30  Identities=13%  Similarity=0.090  Sum_probs=26.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|.|||+|.+|+.++.+|+.+|. .++++|.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r   46 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHM   46 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            89999999999999999999985 5788764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=83.75  E-value=0.85  Score=44.72  Aligned_cols=36  Identities=11%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~  200 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPY  200 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTT
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5889999999999999999999999997 57888753

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=83.75  E-value=2.1  Score=41.00  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCC------CcEEEEeCC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGI------GSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv------~~itlvD~d   52 (456)
                      |...+|+|.| .|++|+.+++.|+..|.      .+++++|..
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~   54 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF   54 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESS
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEcc
Confidence            4456899999 68899999999999993      578888754

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=83.70  E-value=1.6  Score=39.90  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ++++++|+|.| .||+|.++++.|+..|.. +.++|
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~   40 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVAD   40 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEc
Confidence            46788899998 588999999999999975 77776

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=83.69  E-value=4  Score=40.30  Aligned_cols=78  Identities=10%  Similarity=0.007  Sum_probs=49.6

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCC-c---EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCCE-E
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIG-S---ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVK-A   91 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~-~---itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v~-v   91 (456)
                      ..+|.|+| +|.+|..++-.|+..|+- .   +.|+|-+.               +.-..|++..+.-|+... |... +
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~---------------~~~~~~~~G~amDL~h~~~p~~~~v   96 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS---------------ERSFQALEGVAMELEDSLYPLLREV   96 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC---------------GGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCc---------------cchhhhhHHHHHhHHhhhhhhcCCc
Confidence            35799999 799999999999998883 3   77776332               112234555555666554 4332 2


Q ss_pred             EEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           92 KFIEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      ....        .+.+.+++.|+||.+.
T Consensus        97 ~i~~--------~~y~~~~daDvVVita  116 (375)
T 7mdh_A           97 SIGI--------DPYEVFEDVDWALLIG  116 (375)
T ss_dssp             EEES--------CHHHHTTTCSEEEECC
T ss_pred             EEec--------CCHHHhCCCCEEEEcC
Confidence            2211        1233477899999764

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=83.69  E-value=3.1  Score=40.43  Aligned_cols=33  Identities=9%  Similarity=0.031  Sum_probs=25.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~   51 (456)
                      .-+|.|||+|.+|...+++|... |+.-+.++|.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~   38 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR   38 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            35899999999999999999876 5443445563

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=83.66  E-value=2.2  Score=40.20  Aligned_cols=34  Identities=12%  Similarity=0.363  Sum_probs=22.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...+||.+|||+ |. ++..++..|..+++.+|-+.
T Consensus        75 ~~~~VLdiG~G~-G~-~~~~l~~~~~~~v~~vDid~  108 (281)
T 1mjf_A           75 KPKRVLVIGGGD-GG-TVREVLQHDVDEVIMVEIDE  108 (281)
T ss_dssp             CCCEEEEEECTT-SH-HHHHHTTSCCSEEEEEESCH
T ss_pred             CCCeEEEEcCCc-CH-HHHHHHhCCCCEEEEEECCH
Confidence            357899999874 22 23333434888999999554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=83.66  E-value=0.93  Score=44.15  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=32.1

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|.|||+|.+|..+|+.|...|.. ++.+|..
T Consensus       142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~  177 (333)
T 1dxy_A          142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPY  177 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            58899999999999999999999999974 7888854

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=83.65  E-value=1.2  Score=44.53  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC-Ccc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG-SKV   54 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~-d~v   54 (456)
                      +....|+|||+|..|..+|..|++.|..+++|+|. +.+
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~   59 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAP   59 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSST
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCC
Confidence            45678999999999999999999999448999997 554

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=83.58  E-value=1.9  Score=41.22  Aligned_cols=35  Identities=14%  Similarity=0.195  Sum_probs=25.5

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLG-GIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~   51 (456)
                      ++.-+|.|||+|.+|...++.|... ++.=+.++|.
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~   42 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRR   42 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            4567999999999999999999873 4332225564

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=83.54  E-value=7.9  Score=36.50  Aligned_cols=32  Identities=34%  Similarity=0.532  Sum_probs=26.6

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|.| .|.+|+.+++.|...|. +++++|..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   34 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL-SVVVVDNL   34 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4799998 58899999999999994 67777743

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=83.53  E-value=1.6  Score=39.78  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=29.0

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .+++.+|+|.| .||+|.++++.|+..|. ++.++|
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~   45 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISG   45 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEc
Confidence            46788899998 68899999999999996 477776

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=83.52  E-value=1.7  Score=40.74  Aligned_cols=107  Identities=14%  Similarity=0.116  Sum_probs=56.5

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|+|.|+ |.+|+.+++.|. .| .+++.+|...        .  .-..|+..  .+.+.+.++...+++-++.......
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~--------~--~~~~D~~d--~~~~~~~~~~~~~d~vih~a~~~~~   67 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVHS--------K--EFCGDFSN--PKGVAETVRKLRPDVIVNAAAHTAV   67 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTC--------S--SSCCCTTC--HHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             eEEEECCCCHHHHHHHHHhh-cC-CeEEEecccc--------c--cccccCCC--HHHHHHHHHhcCCCEEEECcccCCH
Confidence            6999995 889999999999 78 4688777543        0  11223332  2334444444334333322110000


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      .....      +.+-.+  ..+......+.+.|++.++.+|..++.+.+|
T Consensus        68 ~~~~~------~~~~~~--~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~  109 (299)
T 1n2s_A           68 DKAES------EPELAQ--LLNATSVEAIAKAANETGAWVVHYSTDYVFP  109 (299)
T ss_dssp             HHHTT------CHHHHH--HHHTHHHHHHHHHHTTTTCEEEEEEEGGGSC
T ss_pred             hhhhc------CHHHHH--HHHHHHHHHHHHHHHHcCCcEEEEecccEEe
Confidence            00000      000000  0011224566678888888899998887766

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=83.51  E-value=1  Score=44.29  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ..|+|||+|..|..+|..|++.|. +++|+|....
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~-~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGH-RVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            579999999999999999999998 4999997654

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=83.44  E-value=1.1  Score=46.09  Aligned_cols=37  Identities=11%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE   55 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~   55 (456)
                      +...|+|||.|.+|+.+|..|++.|.+ ++|+|.+.+.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~-V~llE~~~~~   38 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLS-VLMLEAQDLA   38 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCC-EEEEECCCCC
Confidence            356899999999999999999999985 9999976543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=83.44  E-value=2.5  Score=39.31  Aligned_cols=35  Identities=14%  Similarity=0.216  Sum_probs=29.6

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..|++++|+|.| .|++|.++++.|+..|. +++++|
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~   63 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCA   63 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEE
Confidence            457888999998 68999999999999996 477765

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=83.42  E-value=3  Score=40.27  Aligned_cols=32  Identities=13%  Similarity=0.155  Sum_probs=28.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCC------cEEEEeC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~------~itlvD~   51 (456)
                      .+|+|+|+ |.+|+.++..|+..|..      .+.++|.
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di   44 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEI   44 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcC
Confidence            58999997 99999999999998873      7889883

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=83.33  E-value=1.6  Score=45.53  Aligned_cols=35  Identities=9%  Similarity=0.178  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+.+|+|+|.|.+|..+++.|...|.. ++++|.+.
T Consensus       126 ~~~hviI~G~g~~g~~la~~L~~~~~~-vvvid~~~  160 (565)
T 4gx0_A          126 TRGHILIFGIDPITRTLIRKLESRNHL-FVVVTDNY  160 (565)
T ss_dssp             CCSCEEEESCCHHHHHHHHHTTTTTCC-EEEEESCH
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCCC-EEEEECCH
Confidence            356899999999999999999999975 88888553

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=83.33  E-value=1  Score=42.43  Aligned_cols=33  Identities=15%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|||.|..|..+|..|.+.|..+++++|.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            369999999999999999999998679999975

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=83.20  E-value=1.3  Score=43.37  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+|+|+|+|++|..++.-+...|.++++.+|
T Consensus       191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~  222 (371)
T 1f8f_A          191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVD  222 (371)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            46899999999999999888889998888886

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=83.18  E-value=6  Score=38.62  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=22.3

Q ss_pred             cCcEEEEcCChhHHH-HHHHHHHc-CCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSE-TLKNLVLG-GIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~e-iaknLvl~-Gv~~itlvD   50 (456)
                      .-+|.|||+|.+|.. .+..|... |+.=..++|
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d   40 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVAS   40 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEc
Confidence            358999999999987 77777654 443333455

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=83.14  E-value=0.81  Score=47.47  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=27.1

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .++.++|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R  395 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANR  395 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC--CEEEES
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3667899999999999999999999998 7888763

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=83.13  E-value=1  Score=43.27  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~dr~  156 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRT  156 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5889999999999999999999999997 57788754

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=83.11  E-value=2.3  Score=38.85  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |++++|+|.| .|++|.++++.|+..|. ++.++|
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~   44 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIAD   44 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            5678899998 68899999999999996 577776

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=83.08  E-value=1  Score=46.60  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH---cCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVL---GGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl---~Gv~~itlvD~d~v   54 (456)
                      ..+|+|||.|..|..+|..|++   .|+ +++|+|.+.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCCC
Confidence            4689999999999999999999   998 6999997653

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=83.07  E-value=7.3  Score=35.06  Aligned_cols=99  Identities=15%  Similarity=0.092  Sum_probs=51.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ...+|+.+||| .|.-... |+.. ..+++.+|.+                   ....+.+++.+....-.-.++....+
T Consensus        91 ~~~~vldiG~G-~G~~~~~-l~~~-~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~d  148 (248)
T 2yvl_A           91 KEKRVLEFGTG-SGALLAV-LSEV-AGEVWTFEAV-------------------EEFYKTAQKNLKKFNLGKNVKFFNVD  148 (248)
T ss_dssp             TTCEEEEECCT-TSHHHHH-HHHH-SSEEEEECSC-------------------HHHHHHHHHHHHHTTCCTTEEEECSC
T ss_pred             CCCEEEEeCCC-ccHHHHH-HHHh-CCEEEEEecC-------------------HHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            45789999998 4554443 3333 4678888732                   23455555666554321223333332


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCCh-HHHHHHHHHHHHcCCeEEEE
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGE-EKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~-~~~~~l~~~~~~~~ip~i~~  142 (456)
                      .....  ..  -..||+|++..... .....+.+..+..+.-++..
T Consensus       149 ~~~~~--~~--~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          149 FKDAE--VP--EGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             TTTSC--CC--TTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             hhhcc--cC--CCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            21110  00  13699999765443 44555555555555444433

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=83.05  E-value=0.95  Score=46.03  Aligned_cols=35  Identities=31%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..++|+|+|+|++|..+++.|+..|. +++++|.+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCH
Confidence            45789999999999999999999995 599998654

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=83.04  E-value=1.2  Score=41.11  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=27.8

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |.+++|+|.| .|++|.++++.|+..|. +++++|
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~   45 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCA   45 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            5667888888 68899999999999996 577776

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=83.02  E-value=1  Score=42.26  Aligned_cols=30  Identities=17%  Similarity=0.221  Sum_probs=26.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|.|||+|.+|+.++++|.. |. +++++|.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~   31 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF-PTLVWNR   31 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS-CEEEECS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC-eEEEEeC
Confidence            379999999999999999999 87 5888863

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=82.99  E-value=4.7  Score=38.80  Aligned_cols=32  Identities=13%  Similarity=0.082  Sum_probs=27.8

Q ss_pred             CcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSE-TLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~e-iaknLvl~Gv~~itlvD~d   52 (456)
                      ++|.++|.|+.|.. +|+.|...|.. +++.|..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~-V~~~D~~   37 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFE-VSGCDAK   37 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            58999999999996 99999999974 8888853

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=82.91  E-value=0.95  Score=45.29  Aligned_cols=36  Identities=14%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +...+|+|+|+|.+|..+++.+...|. +++++|...
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~  223 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRP  223 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSST
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            567999999999999999999999998 699998543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=82.89  E-value=0.91  Score=44.56  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=32.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCccc
Q 012768           19 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVE   55 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~v~   55 (456)
                      ...|+|||+|..|..+|..|++ .|..+++|+|...+.
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~   58 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA   58 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            4689999999999999999999 995579999976643

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=82.85  E-value=1.7  Score=44.45  Aligned_cols=76  Identities=16%  Similarity=0.238  Sum_probs=45.3

Q ss_pred             cEEEEcCChhHH--HHHHHHH----HcC-CCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEE
Q 012768           21 SVCLLNCGPTGS--ETLKNLV----LGG-IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF   93 (456)
Q Consensus        21 ~VlIiG~gglG~--eiaknLv----l~G-v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~   93 (456)
                      ||.|||+|++|.  +++..|+    ++| ...|.|+|-|.   ..+            +..+..+.+.....++.++++.
T Consensus         2 KI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~---~rl------------~~~~~~~~~~~~~~~~~~~i~~   66 (477)
T 3u95_A            2 KISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHE---RRL------------NASYILARKYVEELNSPVKVVK   66 (477)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCH---HHH------------HHHHHHHHHHHHHHTCCCEEEE
T ss_pred             EEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCH---HHH------------HHHHHHHHHHHHHcCCCeEEEE
Confidence            699999999874  3444444    344 35799998332   100            0112234455566778888776


Q ss_pred             EecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           94 IEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      ....        .+-++++|+||.+.
T Consensus        67 t~d~--------~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           67 TESL--------DEAIEGADFIINTA   84 (477)
T ss_dssp             ESCH--------HHHHTTCSEEEECC
T ss_pred             eCCH--------HHHhCCCCEEEECc
Confidence            4421        12356899999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=82.78  E-value=0.83  Score=46.04  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d   52 (456)
                      ...+|+|||+|..|..+|..|.+.|.. +++++|..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~   40 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   40 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecC
Confidence            356899999999999999999999974 79999965

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=82.70  E-value=1.2  Score=42.19  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ...+|+|||+|..|..+|..|.+.|.. ++|+|...
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~-v~vie~~~   55 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIK-PILYEGMM   55 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCC
Confidence            457899999999999999999999985 99999754

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=82.70  E-value=0.98  Score=44.24  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d   52 (456)
                      .|..++|.|||+|.+|..+|+.|. ..|. +++.+|..
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~  196 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVA  196 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCC
Confidence            488899999999999999999999 8887 58888743

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=82.68  E-value=1.4  Score=42.34  Aligned_cols=42  Identities=17%  Similarity=0.200  Sum_probs=31.9

Q ss_pred             CHHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           10 GEQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        10 G~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |+..+..|+++.|+|.| .||+|.++|+.|+..|. ++.++|.+
T Consensus        18 ~p~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           18 GPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             ----CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CCchhcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            33445567888888888 68899999999999997 68888754

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=82.65  E-value=1.1  Score=44.39  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       113 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~  147 (380)
T 2o4c_A          113 DLAERTYGVVGAGQVGGRLVEVLRGLGW-KVLVCDP  147 (380)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECH
T ss_pred             ccCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            5889999999999999999999999997 5777774

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=82.64  E-value=2.8  Score=42.69  Aligned_cols=35  Identities=20%  Similarity=0.107  Sum_probs=27.4

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCC--CcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGI--GSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv--~~itlvD~   51 (456)
                      .+..+|+|.| .|.+|+++++.|...+-  .++++++.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R  108 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVR  108 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            3567899999 58899999999998831  46777764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=82.62  E-value=1.1  Score=42.38  Aligned_cols=31  Identities=32%  Similarity=0.418  Sum_probs=27.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|.|||+|.+|..++++|...|. +++++|.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~   36 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDR   36 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeC
Confidence            489999999999999999999996 5888774

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=82.61  E-value=1.9  Score=41.62  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+..|+|||+|..|+.+|..|+ .|. +++|+|..
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~-~V~vlE~~   40 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHG-RVVVLERE   40 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTS-CEEEECSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCC-CEEEEECC
Confidence            4678999999999999999999 586 69999976

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=82.60  E-value=2.2  Score=38.85  Aligned_cols=36  Identities=11%  Similarity=0.214  Sum_probs=30.0

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..|++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r   46 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGR   46 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEec
Confidence            357788899998 58999999999999997 4777763

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=82.59  E-value=10  Score=33.14  Aligned_cols=77  Identities=9%  Similarity=0.015  Sum_probs=42.8

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcC-CCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGG-IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~G-v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ...+|+-+|||. |. ++..|+..| -++++.+|.+.                   ...+.+++++...+- -+++.+..
T Consensus        40 ~~~~vLDiG~G~-G~-~~~~la~~~~~~~v~~vD~s~-------------------~~~~~a~~~~~~~~~-~~v~~~~~   97 (204)
T 3e05_A           40 DDLVMWDIGAGS-AS-VSIEASNLMPNGRIFALERNP-------------------QYLGFIRDNLKKFVA-RNVTLVEA   97 (204)
T ss_dssp             TTCEEEEETCTT-CH-HHHHHHHHCTTSEEEEEECCH-------------------HHHHHHHHHHHHHTC-TTEEEEEC
T ss_pred             CCCEEEEECCCC-CH-HHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHHHHhCC-CcEEEEeC
Confidence            356899999985 54 344444444 57888888332                   244555566655442 22344433


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      +...    .......||+|++...
T Consensus        98 d~~~----~~~~~~~~D~i~~~~~  117 (204)
T 3e05_A           98 FAPE----GLDDLPDPDRVFIGGS  117 (204)
T ss_dssp             CTTT----TCTTSCCCSEEEESCC
T ss_pred             Chhh----hhhcCCCCCEEEECCC
Confidence            3211    1112357999997653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=82.54  E-value=1  Score=44.17  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=32.1

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  205 (345)
T 4g2n_A          169 MGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRT  205 (345)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             cccCCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCC
Confidence            35889999999999999999999999887 57777754

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=82.54  E-value=7  Score=36.97  Aligned_cols=71  Identities=11%  Similarity=0.167  Sum_probs=39.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ..+||-+|||. |... ..|+.. |. +++.+|.+                   ....+.+.+++.+....-.++....+
T Consensus        91 ~~~vLDiGcG~-G~~~-~~la~~~~~-~v~gvD~s-------------------~~~~~~a~~~~~~~~~~~~v~~~~~d  148 (318)
T 2fk8_A           91 GMTLLDIGCGW-GTTM-RRAVERFDV-NVIGLTLS-------------------KNQHARCEQVLASIDTNRSRQVLLQG  148 (318)
T ss_dssp             TCEEEEESCTT-SHHH-HHHHHHHCC-EEEEEESC-------------------HHHHHHHHHHHHTSCCSSCEEEEESC
T ss_pred             cCEEEEEcccc-hHHH-HHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCceEEEECC
Confidence            46899999976 4332 333333 65 78888732                   22344455566554422234444433


Q ss_pred             hhhhhcCCcCCCCCCcEEEEc
Q 012768           98 PEALIEMNPPFFSQFTLVVAT  118 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~  118 (456)
                      ...+    +   ..||+|++.
T Consensus       149 ~~~~----~---~~fD~v~~~  162 (318)
T 2fk8_A          149 WEDF----A---EPVDRIVSI  162 (318)
T ss_dssp             GGGC----C---CCCSEEEEE
T ss_pred             hHHC----C---CCcCEEEEe
Confidence            3222    1   579999976

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=82.47  E-value=4.9  Score=38.98  Aligned_cols=86  Identities=21%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcC---------CCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGG---------IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV   89 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~G---------v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v   89 (456)
                      .-+|.|+|+|.+|..+++.|....         +.=..+.|.+.-..           .+++               . .
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-----------~~~~---------------~-~   55 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-----------RAIP---------------Q-E   55 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-----------CSSC---------------G-G
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-----------hccC---------------c-c
Confidence            357999999999999999987653         33334455432110           0010               0 0


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                      .          ...+-.+++ +.|+|+.|+.+..........|.++|+.++++
T Consensus        56 ~----------~~~d~~~ll-~iDvVve~t~~~~~a~~~~~~AL~aGKhVVta   97 (332)
T 2ejw_A           56 L----------LRAEPFDLL-EADLVVEAMGGVEAPLRLVLPALEAGIPLITA   97 (332)
T ss_dssp             G----------EESSCCCCT-TCSEEEECCCCSHHHHHHHHHHHHTTCCEEEC
T ss_pred             c----------ccCCHHHHh-CCCEEEECCCCcHHHHHHHHHHHHcCCeEEEC
Confidence            0          011123344 88999988766544455666778889987754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=82.47  E-value=0.98  Score=43.41  Aligned_cols=30  Identities=27%  Similarity=0.329  Sum_probs=27.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|.|||+|.+|+.++.+|...|. .++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            69999999999999999999995 6888874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=82.47  E-value=0.91  Score=45.07  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+...+|+|+|+|++|..+++.+...|. +++++|..
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~  204 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVR  204 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4678999999999999999999999998 49999854

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=82.46  E-value=1.2  Score=44.29  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       116 ~l~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~  150 (381)
T 3oet_A          116 SLRDRTIGIVGVGNVGSRLQTRLEALGI-RTLLCDP  150 (381)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECH
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECC
Confidence            4889999999999999999999999998 5777774

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=82.43  E-value=1  Score=44.15  Aligned_cols=36  Identities=14%  Similarity=0.139  Sum_probs=31.6

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~  191 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGR  191 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECC
Confidence            46889999999999999999999999997 5777763

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=82.38  E-value=1.1  Score=49.03  Aligned_cols=36  Identities=25%  Similarity=0.472  Sum_probs=32.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ...|+|||.|.+|+.+|..|++.|..+++|+|.+..
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            578999999999999999999999878999998764

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=82.32  E-value=5.8  Score=39.98  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=32.8

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |+.++|.|.|.|.+|..+++.|...|.+-+.+.|.+
T Consensus       233 l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~  268 (440)
T 3aog_A          233 VEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHT  268 (440)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             ccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            678999999999999999999999998888788854

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=82.28  E-value=5.8  Score=38.03  Aligned_cols=36  Identities=11%  Similarity=0.154  Sum_probs=26.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcC-CCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGG-IGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~G-v~~itlvD~d~   53 (456)
                      +.-+|.|||+|.+|...++.|...+ +.-+.++|.+.
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~   40 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTL   40 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCS
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            4568999999999999999998764 33334566544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=82.26  E-value=1.1  Score=43.23  Aligned_cols=35  Identities=9%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLG-GIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~   51 (456)
                      ....+|.|||+|..|..++++|... |+.+++++|.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr  168 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR  168 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            3467899999999999999999987 8889999873

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=82.17  E-value=3  Score=39.78  Aligned_cols=34  Identities=12%  Similarity=0.268  Sum_probs=26.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d   52 (456)
                      ..+|.|||+|.+|...++.|... |+.-+.++|.+
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~   44 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSN   44 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESC
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence            35899999999999999999885 55445577754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=82.02  E-value=1.3  Score=41.74  Aligned_cols=33  Identities=18%  Similarity=0.123  Sum_probs=30.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|||.|..|..+|..|.+.|.. ++|+|..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~-v~lie~~   47 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLK-TLVIGET   47 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCc-EEEEecc
Confidence            45899999999999999999999975 9999976

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=81.98  E-value=8.9  Score=36.71  Aligned_cols=35  Identities=11%  Similarity=0.160  Sum_probs=26.3

Q ss_pred             hcCcEEEEcCChhHH-HHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGS-ETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~-eiaknLvl~Gv~~itlvD~d   52 (456)
                      +.-+|.|||+|..|. ..+.+|...|+.=+.++|.+
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~   38 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESD   38 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCC
Confidence            456899999999996 67888877777555677743

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=81.90  E-value=5.5  Score=37.98  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=26.7

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCC-CcEEEEeCC
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGI-GSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv-~~itlvD~d   52 (456)
                      .+|+|.| .|.+|+.+++.|+..|- .+++++|..
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~   39 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKL   39 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            4799999 68899999999999953 368887753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=81.88  E-value=1.2  Score=42.13  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..+|+|||.|..|..+|..|.+.|. +++|+|...
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   40 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQA-SVKIIESLP   40 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence            3589999999999999999999997 699998753

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=81.87  E-value=1.1  Score=43.69  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|..++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       162 ~l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~  196 (335)
T 2g76_A          162 ELNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDP  196 (335)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECC
Confidence            5889999999999999999999998885 5777773

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=81.86  E-value=4.7  Score=39.23  Aligned_cols=33  Identities=18%  Similarity=0.107  Sum_probs=22.7

Q ss_pred             cCcEEEEcCChhHHH-HHHHHHHc-CCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSE-TLKNLVLG-GIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~e-iaknLvl~-Gv~~itlvD~   51 (456)
                      .-+|.|||+|.+|.. .+..|... |+.=+.++|.
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~   39 (358)
T 3gdo_A            5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTS   39 (358)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECS
T ss_pred             cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcC
Confidence            458999999999986 67777544 4433345553

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=81.83  E-value=4.6  Score=36.43  Aligned_cols=102  Identities=12%  Similarity=0.037  Sum_probs=52.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC-CCCEEEEEec
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln-p~v~v~~~~~   96 (456)
                      ...+||-+||| .|...+.-.-+.| ++++.+|.+.                   ..++.+++++.... +.+  +....
T Consensus        91 ~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~v--~~~~~  147 (235)
T 1jg1_A           91 PGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIP-------------------ELVEFAKRNLERAGVKNV--HVILG  147 (235)
T ss_dssp             TTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCH-------------------HHHHHHHHHHHHTTCCSE--EEEES
T ss_pred             CCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCH-------------------HHHHHHHHHHHHcCCCCc--EEEEC
Confidence            45689999998 5655554444445 7899988332                   34555556666543 233  33333


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      +.. .   ....-..||+|+++.........+.+.++..|.-++.+...+
T Consensus       148 d~~-~---~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          148 DGS-K---GFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             CGG-G---CCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEECSSS
T ss_pred             Ccc-c---CCCCCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            221 0   111112589999764322222234444444455455554433

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=81.81  E-value=1.2  Score=42.00  Aligned_cols=30  Identities=17%  Similarity=0.371  Sum_probs=27.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEe
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .+|.|||+ |.+|+.+++.|...|. +++++|
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~   42 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIE   42 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEE
Confidence            48999999 9999999999999996 677876

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=81.76  E-value=1.1  Score=47.66  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=28.1

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHc-CCCcEEEEeCC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLG-GIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~-Gv~~itlvD~d   52 (456)
                      ++..+|+|.| .|.+|+++++.|... |. +++++|..
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~-~V~~~~r~  349 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIG  349 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSE-EEEEEESC
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCC-EEEEEEcC
Confidence            4667899999 588999999999998 64 68887754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=81.71  E-value=1.2  Score=43.87  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ..+|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~-V~viE~~~   39 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHR-VVVVEQAR   39 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence            35799999999999999999999985 99998653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=81.68  E-value=1.3  Score=42.27  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=29.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|||+|..|..+|..|.+.|. +++|+|..
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   37 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGL-SFRFVDPL   37 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            4689999999999999999999997 69999964

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=81.64  E-value=1.3  Score=45.56  Aligned_cols=33  Identities=18%  Similarity=0.409  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~-~V~liEk~  124 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGA-RVVLVEKR  124 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCC-eEEEEEec
Confidence            4679999999999999999999997 69999865

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=81.63  E-value=3.3  Score=38.60  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..|+++.|+|.| .||+|.++++.|+..|. ++.++|..
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~   48 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDIC   48 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecc
Confidence            457888999998 68899999999999997 57787754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=81.63  E-value=1.3  Score=42.95  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHc-CCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLG-GIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~-Gv~~itlvD~   51 (456)
                      +++.+|+|.| .|++|+.+++.|+.. |..++++++.
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r   55 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR   55 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEES
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            5678999999 588999999999999 9888998874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=81.62  E-value=1.2  Score=46.19  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH---cCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVL---GGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl---~Gv~~itlvD~d~v   54 (456)
                      ..+|+|||.|..|..+|..|++   .|+ +++|+|.+..
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   62 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPDI   62 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCCC
Confidence            5689999999999999999999   888 7999997654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=81.61  E-value=0.59  Score=45.49  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCC------CcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGI------GSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv------~~itlvD~d   52 (456)
                      ..+|.|||+|.+|+.++..|+..|.      ..++++|.+
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~   47 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFE   47 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcC
Confidence            3589999999999999999999993      468888754

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=81.60  E-value=4.4  Score=38.37  Aligned_cols=116  Identities=13%  Similarity=0.123  Sum_probs=60.8

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           18 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      ++.+|+|+|+ |..|..++++|...|..-+..+|+......           ..|.+--..+.+.+.+-.+++-+-... 
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~-----------~~G~~vy~sl~el~~~~~~D~viI~tP-   73 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT-----------HLGLPVFNTVREAVAATGATASVIYVP-   73 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE-----------ETTEEEESSHHHHHHHHCCCEEEECCC-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccce-----------eCCeeccCCHHHHhhcCCCCEEEEecC-
Confidence            3578999998 889999999999999864445665422101           112211111223333334555443322 


Q ss_pred             ChhhhhcCCcCCC-CCCcEEEE-cC-CChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           97 YPEALIEMNPPFF-SQFTLVVA-TQ-LGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        97 ~~~~~~~~~~~~~-~~~dvVi~-~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                       +....+.-.+.. .+..++|+ +. .+......+.+.|+++++.++.-.+.|
T Consensus        74 -~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGPNc~G  125 (288)
T 2nu8_A           74 -APFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNTPG  125 (288)
T ss_dssp             -GGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSCCE
T ss_pred             -HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCcc
Confidence             111110000111 24455443 32 344556688889999988766444443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=81.59  E-value=2.5  Score=39.51  Aligned_cols=40  Identities=10%  Similarity=0.060  Sum_probs=32.3

Q ss_pred             HHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           11 EQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        11 ~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ......|++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        25 ~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   65 (275)
T 4imr_A           25 LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGV   65 (275)
T ss_dssp             HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            3444567888899998 68999999999999998 5777763

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=81.57  E-value=4.4  Score=39.46  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=18.6

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHH
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLV   39 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLv   39 (456)
                      ..|++-||.|||+|.+|..-++.+.
T Consensus        21 ~~MkkirvgiIG~G~ig~~H~~a~~   45 (393)
T 4fb5_A           21 QSMKPLGIGLIGTGYMGKCHALAWN   45 (393)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHT
T ss_pred             cCCCCccEEEEcCCHHHHHHHHHHH
Confidence            4577789999999999987776654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=81.56  E-value=1.8  Score=42.51  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+|+|+|+|++|..++.-+...|.++++.+|
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~  225 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGID  225 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTCSCEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            57899999999999999999999999899887

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=81.52  E-value=2.3  Score=41.50  Aligned_cols=81  Identities=14%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             HHhcCcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCC
Q 012768           16 ALEKASVCLLNC-GPTGSETLKNLVLGGI-G-----SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA   88 (456)
Q Consensus        16 ~L~~~~VlIiG~-gglG~eiaknLvl~Gv-~-----~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~   88 (456)
                      .+..-||.|+|+ |++|..++-.|+...+ +     .+.|+|-.                 -+..+++-.+--|+.....
T Consensus        21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~-----------------~~~~~~~Gva~DL~~~~~~   83 (345)
T 4h7p_A           21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIE-----------------PALKALAGVEAELEDCAFP   83 (345)
T ss_dssp             -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG-----------------GGHHHHHHHHHHHHHTTCT
T ss_pred             CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCC-----------------CccccchhhhhhhhhcCcc
Confidence            455669999996 9999999998887654 3     68888721                 1223445555556665433


Q ss_pred             CEEEEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           89 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        89 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      .........      +..+.+++.|+||.+.
T Consensus        84 ~~~~~~~~~------~~~~a~~~advVvi~a  108 (345)
T 4h7p_A           84 LLDKVVVTA------DPRVAFDGVAIAIMCG  108 (345)
T ss_dssp             TEEEEEEES------CHHHHTTTCSEEEECC
T ss_pred             CCCcEEEcC------ChHHHhCCCCEEEECC
Confidence            333322211      1123477899999764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=81.52  E-value=1.3  Score=45.47  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=31.7

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++-....|+|||+|..|..+|..|.+.|+. ++|+|..
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~-v~vlE~~   43 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVE-VVVLERL   43 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESC
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEeCC
Confidence            344567899999999999999999999995 8898864

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=81.36  E-value=2.5  Score=40.64  Aligned_cols=34  Identities=12%  Similarity=0.221  Sum_probs=26.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d   52 (456)
                      .-+|.|+|+|.+|..+++.|... ++.-+.++|.+
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~   37 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            45899999999999999999876 44444566643

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=81.33  E-value=0.86  Score=44.34  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       142 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~  177 (330)
T 4e5n_A          142 GLDNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAK  177 (330)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSS
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            4789999999999999999999998887 47778754

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=81.30  E-value=1.5  Score=41.18  Aligned_cols=36  Identities=14%  Similarity=0.349  Sum_probs=30.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHc-CCCcEEEEeCCc
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~-Gv~~itlvD~d~   53 (456)
                      .....|+|||.|..|..+|..|++. |. +++|+|...
T Consensus        37 ~~~~dVvIIGgG~aGl~aA~~la~~~G~-~V~viEk~~   73 (284)
T 1rp0_A           37 YAETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   73 (284)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCC-eEEEEECCC
Confidence            3556899999999999999999996 87 599998653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=81.27  E-value=1.2  Score=45.49  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      -.+|.|||+|.+|+-+|.+|+.+|. .++++|.+
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~   69 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESD   69 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            3579999999999999999999997 68888843

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=81.23  E-value=1.3  Score=44.35  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ....|+|||+|..|..+|..|++.|. +++|+|...
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~-~V~llEk~~   60 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHAR   60 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            35689999999999999999999997 599999754

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=81.17  E-value=4.1  Score=37.73  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|++++|+|.| .||+|.++++.|+..|. +++++|.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   41 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIH   41 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            46778899998 68899999999999997 58888754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=81.00  E-value=1.4  Score=40.62  Aligned_cols=47  Identities=17%  Similarity=0.138  Sum_probs=29.1

Q ss_pred             ccccCHHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768            6 LRIWGEQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus         6 lrlwG~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      -+.|....+....+++|+|.| .||+|.++++.|+..|.. +.++|.+.
T Consensus         9 ~~~~~~~~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~   56 (251)
T 3orf_A            9 HHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWN-TISIDFRE   56 (251)
T ss_dssp             -------------CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             cccccccccccccCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            344555555556678899998 578999999999999975 88887543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=80.99  E-value=3.5  Score=38.69  Aligned_cols=36  Identities=14%  Similarity=0.242  Sum_probs=30.8

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      |+++.|+|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~   43 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSA   43 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            6778899998 68899999999999998 688887554

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=80.99  E-value=6.4  Score=37.53  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=27.2

Q ss_pred             CcEEEEcCC-hhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCG-PTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~g-glG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|.|||+| .+|...++.|...|+.-+.++|.+
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~   37 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPA   37 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSS
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCC
Confidence            589999995 499999999999887666677644

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=80.96  E-value=2.6  Score=39.02  Aligned_cols=98  Identities=12%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHc--CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           21 SVCLLNC-GPTGSETLKNLVLG--GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~--Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      +|+|.|+ |.+|+.+++.|...  |. ++++++.+.-                   +..    .+..  +.+++...+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~-------------------~~~----~~~~--~~~~~~~~D~~   54 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPA-------------------KAQ----ALAA--QGITVRQADYG   54 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTT-------------------TCH----HHHH--TTCEEEECCTT
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChH-------------------hhh----hhhc--CCCeEEEcCCC
Confidence            5899995 88999999999987  74 6777764311                   111    1111  23433222111


Q ss_pred             -hhhhhcCCcCCCCCCcEEEEcCCC-----hHHHHHHHHHHHHcCC-eEEEEeeccce
Q 012768           98 -PEALIEMNPPFFSQFTLVVATQLG-----EEKMIKLDRICREANV-MLIFARSYGLT  148 (456)
Q Consensus        98 -~~~~~~~~~~~~~~~dvVi~~~~~-----~~~~~~l~~~~~~~~i-p~i~~~~~G~~  148 (456)
                       ++.+    ...++++|+||.+...     ......+.+.|++.++ .+|..++.+.+
T Consensus        55 d~~~~----~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~  108 (286)
T 2zcu_A           55 DEAAL----TSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHAD  108 (286)
T ss_dssp             CHHHH----HHHTTTCSEEEECC--------CHHHHHHHHHHHHTCCEEEEEEETTTT
T ss_pred             CHHHH----HHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence             1111    2335678888854321     2234566678887775 57777766543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=80.93  E-value=2.2  Score=39.32  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .|++++|+|.| .||+|.++++.|+..|.. +.++|
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~   43 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTD   43 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            46778889998 688999999999999985 77776

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=80.91  E-value=1  Score=41.68  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEcC-C-hhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLNC-G-PTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG~-g-glG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|++++|+|.|+ | |+|.++++.|+..|.. +.++|.
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r   55 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDY   55 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecC
Confidence            477889999998 6 8999999999999975 777763

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=80.89  E-value=1.3  Score=45.58  Aligned_cols=35  Identities=14%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +...+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~  306 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEID  306 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            567899999999999999999999997 78888744

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=80.83  E-value=2  Score=44.94  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE   55 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~   55 (456)
                      ...|+|||.|.+|+.+|..|+..|. +++|+|.+.+.
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~-~V~LlE~~~~~   67 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGI-KTGLIEMQDFA   67 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            4689999999999999999999997 59999976543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=80.79  E-value=2.7  Score=39.28  Aligned_cols=34  Identities=12%  Similarity=0.128  Sum_probs=25.9

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      -++.+.|+|.| .||+|.++++.|+..|.. +.++|
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~   55 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCA   55 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            45667888888 689999999999999975 77766

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=80.78  E-value=1.5  Score=42.85  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=28.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|.|||+|.+|+.+++.|...|. .++++|.+
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~   40 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRS   40 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3579999999999999999999994 68888743

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=80.70  E-value=0.85  Score=43.03  Aligned_cols=43  Identities=14%  Similarity=0.288  Sum_probs=34.9

Q ss_pred             cCHHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768            9 WGEQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |....+..|++++|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         6 ~~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~   49 (291)
T 3rd5_A            6 WTAADLPSFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRD   49 (291)
T ss_dssp             CCGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            555555567888999998 68899999999999996 58888754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=80.63  E-value=1.4  Score=44.48  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=32.4

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .|..++|+|+|.|.+|..+|+.|...|. +++++|.+.
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p  244 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDP  244 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCh
Confidence            3668899999999999999999999998 588888654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=80.60  E-value=2.8  Score=41.57  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=28.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+|+|+|+|++|..++.-+...|.+++..+|
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  245 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSE  245 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            46799999999999999999999998888886

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=80.59  E-value=1.1  Score=41.38  Aligned_cols=31  Identities=13%  Similarity=0.230  Sum_probs=27.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|.|||+|.+|..++++|...| ..++++|.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~v~~~~~   34 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HELIISGS   34 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEECC
Confidence            47999999999999999999998 46777763

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=80.44  E-value=6  Score=38.31  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=23.3

Q ss_pred             cCcEEEEcCChhHHH-HHHHHHHc-CCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSE-TLKNLVLG-GIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~e-iaknLvl~-Gv~~itlvD~   51 (456)
                      .-+|.|||+|.+|.. .+..|... |+.=+.++|.
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~   41 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSS   41 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECS
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECC
Confidence            358999999999987 78877654 4433335553

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=80.44  E-value=2.5  Score=38.93  Aligned_cols=33  Identities=21%  Similarity=0.111  Sum_probs=27.0

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHH---cCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVL---GGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl---~Gv~~itlvD   50 (456)
                      |++++|+|.| .||+|.++++.|+.   .|. ++.++|
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~   40 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSA   40 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEE
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEe
Confidence            5567788888 68999999999999   786 577776

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=80.42  E-value=6.9  Score=38.48  Aligned_cols=91  Identities=13%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      -+|.|+|+ |-+|.|+++-|...+.-.+.+.=             +.+....|++-+         +. ........   
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~-------------~as~~saG~~~~---------~~-~~~~~~~~---   56 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRY-------------LASARSAGKSLK---------FK-DQDITIEE---   56 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEE-------------EECTTTTTCEEE---------ET-TEEEEEEE---
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEE-------------EEccccCCCcce---------ec-CCCceEee---
Confidence            58999995 55899999999887554433321             112223343221         00 11222111   


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                           .+.+.+.+.|+|+.|......+ .+.....+.+..+|+.
T Consensus        57 -----~~~~~~~~~Dvvf~a~~~~~s~-~~a~~~~~~G~~vIDl   94 (366)
T 3pwk_A           57 -----TTETAFEGVDIALFSAGSSTSA-KYAPYAVKAGVVVVDN   94 (366)
T ss_dssp             -----CCTTTTTTCSEEEECSCHHHHH-HHHHHHHHTTCEEEEC
T ss_pred             -----CCHHHhcCCCEEEECCChHhHH-HHHHHHHHCCCEEEEc
Confidence                 1223467899999888654444 3444445667766654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=80.37  E-value=11  Score=34.97  Aligned_cols=71  Identities=14%  Similarity=0.171  Sum_probs=38.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHH-HcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ..+||-+|||. |.. +..|+ ..|. +++-+|.+.                   .-.+.+.+++.+....-.++....+
T Consensus        65 ~~~vLDiGcG~-G~~-~~~l~~~~~~-~v~gvd~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d  122 (287)
T 1kpg_A           65 GMTLLDVGCGW-GAT-MMRAVEKYDV-NVVGLTLSK-------------------NQANHVQQLVANSENLRSKRVLLAG  122 (287)
T ss_dssp             TCEEEEETCTT-SHH-HHHHHHHHCC-EEEEEESCH-------------------HHHHHHHHHHHTCCCCSCEEEEESC
T ss_pred             cCEEEEECCcc-cHH-HHHHHHHcCC-EEEEEECCH-------------------HHHHHHHHHHHhcCCCCCeEEEECC
Confidence            46899999975 332 22333 4466 788887322                   2334445555544332234444433


Q ss_pred             hhhhhcCCcCCCCCCcEEEEc
Q 012768           98 PEALIEMNPPFFSQFTLVVAT  118 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~  118 (456)
                      ...+    +   ..||+|++.
T Consensus       123 ~~~~----~---~~fD~v~~~  136 (287)
T 1kpg_A          123 WEQF----D---EPVDRIVSI  136 (287)
T ss_dssp             GGGC----C---CCCSEEEEE
T ss_pred             hhhC----C---CCeeEEEEe
Confidence            3222    1   589999976

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=80.35  E-value=1.1  Score=44.00  Aligned_cols=33  Identities=33%  Similarity=0.418  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .++|+|||.|..|..+|..|.+.|  +++|+|.+.
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g--~V~lie~~~   40 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY--EVTVIDKEP   40 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS--EEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC--CEEEEECCC
Confidence            589999999999999999999999  999999765

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=80.34  E-value=1.6  Score=42.13  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|.|||+|-.|+-+|-.++.+|+. ++++|.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECC
Confidence            46899999999999999999999985 9999854

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=80.34  E-value=7.7  Score=37.76  Aligned_cols=92  Identities=11%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             HhcCcEEEEcCChhHH-HHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           17 LEKASVCLLNCGPTGS-ETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        17 L~~~~VlIiG~gglG~-eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      ++.-+|.|||+|..|. ..+..|...|+.=+.++|.+.                   .|++.+++.    .+.+.+  . 
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~-------------------~~a~~~a~~----~~~~~~--~-   77 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDD-------------------ALAAEFSAV----YADARR--I-   77 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCH-------------------HHHHHHHHH----SSSCCE--E-
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCH-------------------HHHHHHHHH----cCCCcc--c-
Confidence            4567999999999885 467777777776566666322                   244443332    232221  2 


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      .+.+++.+.     .+.|+|+.++.+ ..-..+...|.+.|++++
T Consensus        78 ~~~~~ll~~-----~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl  116 (361)
T 3u3x_A           78 ATAEEILED-----ENIGLIVSAAVS-SERAELAIRAMQHGKDVL  116 (361)
T ss_dssp             SCHHHHHTC-----TTCCEEEECCCH-HHHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHhcC-----CCCCEEEEeCCh-HHHHHHHHHHHHCCCeEE
Confidence            233333221     247888877754 444566667777887644

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=80.33  E-value=0.93  Score=44.67  Aligned_cols=33  Identities=12%  Similarity=0.079  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC------CcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGI------GSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv------~~itlvD~d   52 (456)
                      .+|.|||+|.+|+.++..|+.+|.      ..++++|.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~   60 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRD   60 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECC
Confidence            479999999999999999999992      468888754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=80.33  E-value=2.1  Score=42.34  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|||.|.+|+|+|..|...|. ++|+++..
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~  178 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIIL  178 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcC
Confidence            6899999999999999999999996 68998743

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=80.25  E-value=0.7  Score=43.22  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=31.2

Q ss_pred             cCHHHHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768            9 WGEQGQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|...+..|++++|+|.| .||+|.++++.|+..|. ++.++|
T Consensus        17 ~g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~   58 (266)
T 3grp_A           17 QGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHG   58 (266)
T ss_dssp             ----CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            555556678888999998 68899999999999996 477766

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=80.23  E-value=1.5  Score=44.95  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      -.+|.|||+|..|+-+|.+|+.+|. .++++|.+
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGH-QVLLYDIS   37 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999997 68998844

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=80.20  E-value=1.6  Score=40.17  Aligned_cols=36  Identities=11%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..|+++.|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r   44 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGR   44 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            357888999998 58899999999999998 5777763

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=80.19  E-value=1.3  Score=45.24  Aligned_cols=37  Identities=11%  Similarity=0.127  Sum_probs=32.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+..++|.|+|.|.+|..+|+.|...|. +++++|.+.
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~  290 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDP  290 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCCh
Confidence            4788999999999999999999999997 688888553

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=80.19  E-value=1.5  Score=43.54  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~   53 (456)
                      ..+|+|||.|..|..+|..|.+.|.. +++++|.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   42 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   42 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCC
Confidence            46899999999999999999999985 899999754

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=80.17  E-value=1.3  Score=44.13  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ++..|+|||.|..|..+|..|+..|. +++|+|...
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~-~V~vlEk~~   37 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGK   37 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            35789999999999999999999998 699999654

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=80.16  E-value=1.1  Score=46.03  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=29.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHH---cCCCcEEEEeCCcc
Q 012768           20 ASVCLLNCGPTGSETLKNLVL---GGIGSITVIDGSKV   54 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl---~Gv~~itlvD~d~v   54 (456)
                      .+|+|||.|..|..+|..|++   .|+ +++|+|.+.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~-~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRI-DVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGS-EEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCC-EEEEEecCCC
Confidence            579999999999999999999   999 7999997654

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=80.13  E-value=4.1  Score=41.62  Aligned_cols=110  Identities=12%  Similarity=0.111  Sum_probs=60.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH---------hCCCC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE---------LNDAV   89 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~---------lnp~v   89 (456)
                      .+|+|.|+ |.+|+.+++.|...|. ++++++...-                .....+.+.+.++.         ..+.+
T Consensus       151 ~~VLVTGatG~iG~~l~~~L~~~g~-~V~~l~R~~~----------------~~~~~~~l~~~l~~~~~~~~~~~~~~~v  213 (508)
T 4f6l_B          151 GNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN----------------EEIAWYKLMTNLNDYFSEETVEMMLSNI  213 (508)
T ss_dssp             EEEEESCTTSHHHHHHHHHTBTTEE-EEEEEEESSS----------------HHHHHHHHHHHHHHHSCHHHHHHHSTTE
T ss_pred             CeEEEECCccchHHHHHHHHHhcCC-EEEEEECCCC----------------hHHHHHHHHHHHHHhcccccchhccCce
Confidence            47999995 8899999999955543 4555542110                00011122222222         23444


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCCC--------------hHHHHHHHHHHHHcCCeEEEEeeccceeeE
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLG--------------EEKMIKLDRICREANVMLIFARSYGLTGFV  151 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~--------------~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v  151 (456)
                      ++  +..+..+.  .......++|+||-+...              ......+.+.|.+...++|++++.+. |..
T Consensus       214 ~~--v~~Dl~d~--~~l~~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~  284 (508)
T 4f6l_B          214 EV--IVGDFECM--DDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTY  284 (508)
T ss_dssp             EE--EEEBTTBC--SSCCCSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSE
T ss_pred             EE--EecCCccc--ccCCCccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccC
Confidence            43  33322110  111145689999965321              12234556677777788999988887 643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=80.10  E-value=1.6  Score=41.39  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|||.|..|..+|..|.+.|. +++|+|..
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~   48 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGF-SVAILDKA   48 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-cEEEEeCC
Confidence            4679999999999999999999997 59999974

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=80.07  E-value=4  Score=38.13  Aligned_cols=35  Identities=11%  Similarity=0.122  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   64 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAAR   64 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46778999998 68999999999999997 4777763

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=80.01  E-value=0.94  Score=41.15  Aligned_cols=92  Identities=16%  Similarity=0.159  Sum_probs=54.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHH--HcCCCcEEEEeCCcccccCCCc-cccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLV--LGGIGSITVIDGSKVEVGDLGN-NFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLv--l~Gv~~itlvD~d~v~~~nl~r-~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      ..+|+|+|+|.+|..+++.+.  ..|..=+-++|.|.-.  -.++ .       +                ..+.|...+
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~--kiG~~~-------i----------------~GvpV~~~~  138 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSND--LVGKTT-------E----------------DGIPVYGIS  138 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTST--TTTCBC-------T----------------TCCBEEEGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchh--ccCcee-------E----------------CCeEEeCHH
Confidence            458999999999999999853  3344456677866420  1121 1       0                023433221


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA  142 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~  142 (456)
                       ....+...     .+.|+++.|..+. ....+.+.|.+.|+.-|.-
T Consensus       139 -dL~~~v~~-----~~Id~vIIAvPs~-~aq~v~d~lv~~GIk~I~n  178 (212)
T 3keo_A          139 -TINDHLID-----SDIETAILTVPST-EAQEVADILVKAGIKGILS  178 (212)
T ss_dssp             -GHHHHC-C-----CSCCEEEECSCGG-GHHHHHHHHHHHTCCEEEE
T ss_pred             -HHHHHHHH-----cCCCEEEEecCch-hHHHHHHHHHHcCCCEEEE
Confidence             11111111     1568888887553 4457888899999886644

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=80.89  E-value=0.37  Score=43.37  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +...+|.|||+|.+|+.++++|...|. .++++|.
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~-~V~~~~r   50 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGY-SVVFGSR   50 (201)
Confidence            566789999999999999999999986 4666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	1e-143
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	7e-22
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	2e-11

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  418 bits (1076), Expect = e-143
 Identities = 176/494 (35%), Positives = 279/494 (56%), Gaps = 47/494 (9%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR+WG+ GQ ALE A VCL+N   TG+E LKNLVL GIGS T+IDG++V   D GNNF L
Sbjct: 12  LRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFL 71

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
             S +G+++A++   FLQELN  V   F+EE PE L++ +P FF +FT+VVATQL E   
Sbjct: 72  QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTS 131

Query: 126 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 185
           ++L  +   + + L+  R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+PELR+  
Sbjct: 132 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 191

Query: 186 ETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMVAI-- 243
           +++DL+  +   H HTP++VI+ K   +W +   G +P T +EK +F++L++  ++    
Sbjct: 192 QSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNEN 251

Query: 244 ----DEDNYKEAIEASFKVFAPPGIKLALSKVLQ-------SADSSFFPFSIAIGRPWIF 292
               DE+N++EAI+          I  ++  +         +  +  F       + ++ 
Sbjct: 252 GAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVA 311

Query: 293 ---------------------------------AEADCLAIEQRVRNNLKKLGREPESIS 319
                                            A+ D  A+   V   L+ +G+ PESIS
Sbjct: 312 KEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESIS 371

Query: 320 KATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFA 379
           +  +K  C N+  L+V R R L +E+   ++   +   + ++    +  Y++LRAVDRF 
Sbjct: 372 EKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFH 431

Query: 380 ANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAA 439
                YPG  +  ++EDI +LK+     L + G +   + +D ++E CR+GAAE H +AA
Sbjct: 432 KQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAEPHTIAA 490

Query: 440 FIGGVASQEVIKVV 453
           F+GG A+QEVIK++
Sbjct: 491 FLGGAAAQEVIKII 504

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 7e-22
 Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 38/220 (17%)

Query: 10  GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC 69
            E  Q  L+   V ++  G  G E LKNL L G   I VID   ++V +L   F+     
Sbjct: 28  TESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKD 87

Query: 70  VGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLD 129
           +G  KA+    FL +         +  +   + + N  F+ QF ++V           ++
Sbjct: 88  IGRPKAEVAAEFLNDRV---PNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWIN 144

Query: 130 RIC------------REANVMLIFARSYGLTGFVRISVKEHT------------------ 159
            +               + V LI   + G  G  R+ +   T                  
Sbjct: 145 GMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPM 204

Query: 160 ----VVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDP 195
                +   P+H ++ +R+   WP+ + F E   L+  DP
Sbjct: 205 CTIASMPRLPEHCIEYVRMLQ-WPKEQPFGEGVPLDGDDP 243

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 61.9 bits (149), Expect = 2e-11
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 2/144 (1%)

Query: 6   LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFML 65
           LR +   GQ AL+ + V ++  G  G    + L   G+G++T++D   V + +L    + 
Sbjct: 17  LRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLH 76

Query: 66  DESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 125
            ++ VG+ K +S    L  +N  +    +               ++  LV+         
Sbjct: 77  SDATVGQPKVESARDALTRINPHIAITPVNAL--LDDAELAALIAEHDLVLDCTDNVAVR 134

Query: 126 IKLDRICREANVMLIFARSYGLTG 149
            +L+  C  A V L+   +  + G
Sbjct: 135 NQLNAGCFAAKVPLVSGAAIRMEG 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.8
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.4
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.24
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.04
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.97
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.93
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.85
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.84
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.76
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.74
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.63
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.52
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.51
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.49
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.4
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.39
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.35
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.33
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.32
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.3
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.27
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.09
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.07
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.05
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.92
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.87
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.87
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.82
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.78
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.78
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.64
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.62
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.58
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.49
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.39
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.23
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.2
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.13
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.08
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.06
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.06
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.02
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.95
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.94
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.84
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.7
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.62
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.6
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.59
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.48
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.45
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.3
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.24
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.15
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.1
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.0
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.99
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.91
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.89
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.86
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.82
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.81
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.78
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.78
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.71
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.66
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.55
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.41
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.38
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	93.29
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.25
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.14
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.11
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.08
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.93
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.92
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.77
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.73
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.54
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	92.51
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.45
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.43
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.37
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.28
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.26
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.01
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	91.94
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.93
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.88
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	91.8
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.76
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	91.6
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.42
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.41
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.28
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.22
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	91.14
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.08
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	91.06
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.03
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	90.99
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	90.82
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	90.65
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.55
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.47
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.44
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.41
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.3
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.17
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.96
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.95
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.93
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	89.79
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.79
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.54
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.48
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	89.32
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.29
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	89.28
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.14
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.08
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.99
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.85
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.66
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.33
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	88.27
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.21
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.2
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.02
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	87.94
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	87.92
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	87.81
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	87.78
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.63
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.63
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.56
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	87.44
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.42
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.41
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.28
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.17
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	87.06
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.02
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.94
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	86.86
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.56
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	86.51
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	86.48
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	86.37
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.32
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	86.18
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	86.18
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	86.17
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.12
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	86.12
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.04
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	85.92
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.91
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	85.83
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	85.8
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	85.8
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	85.76
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	85.69
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	85.6
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.54
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	85.41
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	85.36
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.36
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.32
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	85.22
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.12
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.04
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.92
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	84.89
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.73
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	84.72
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	84.67
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	84.47
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	84.38
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	84.22
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.12
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	84.01
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.96
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	83.87
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.83
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.79
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.73
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	83.69
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	83.61
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	83.59
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.45
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	83.43
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.4
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	83.19
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.18
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	82.98
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	82.85
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	82.74
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	82.73
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	82.67
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.66
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	82.65
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	82.44
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	82.4
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	82.27
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	81.85
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.78
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	81.74
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	81.49
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.38
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.12
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	81.12
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	81.07
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	81.03
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	80.99
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	80.87
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.78
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.75
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	80.32
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	80.31
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	80.23
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	80.14

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-95  Score=765.09  Aligned_cols=452  Identities=39%  Similarity=0.714  Sum_probs=419.6

Q ss_pred             CcccccccCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHH
Q 012768            2 SMSTLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF   81 (456)
Q Consensus         2 y~RQlrlwG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~   81 (456)
                      ||||+||||.+||++|++++|||+|+||+|+|+||||+|+|||+|||+|+|.|+.+||+||||++++|+|++||++++++
T Consensus         8 YdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~   87 (529)
T d1yova1           8 YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEF   87 (529)
T ss_dssp             THHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeeeCCceeE
Q 012768           82 LQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVV  161 (456)
Q Consensus        82 l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~~~~~  161 (456)
                      |+++||+|+++.+...+..+.+.+.+++.+||+||+|.++...+..++++|+++++|||.+++.|++|++|+++++|+++
T Consensus        88 L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~v~~~~~~~~~~  167 (529)
T d1yova1          88 LQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVI  167 (529)
T ss_dssp             HHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECSCEEES
T ss_pred             HHHhCCCCcEEEEcCCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCCEEEEEEEeCCceEE
Confidence            99999999999998888777777788999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCcccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc
Q 012768          162 ESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSKMV  241 (456)
Q Consensus       162 ~~~~~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~~~  241 (456)
                      ++||+...+|||+.+|||+|.++++++|++.+++..|+|+||++++++++++|+..|+|..|++.+++.+|++++..++.
T Consensus       168 e~~p~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~vP~~vil~~~l~~~~~~~~g~~p~~~~ek~~~k~~i~~~~~  247 (529)
T d1yova1         168 ESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGIL  247 (529)
T ss_dssp             CCCCSSCCCCCCSSSCCHHHHHHHHTCCSSSSCHHHHTTSCHHHHHHHHHHHHHHHTCCCCCCTTTHHHHHHHHHHTSSC
T ss_pred             ecCCCCCCCccccCCCcHHHHHHHhhcCcccCCccccCcCchHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988775


Q ss_pred             C------CCCCCHHHHHHHHhhccCCCCccHHHHHHHh--------cCCCCchHHHHHhhh-------------------
Q 012768          242 A------IDEDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIGR-------------------  288 (456)
Q Consensus       242 ~------~~~~nf~EA~~~~~~~~~~~~i~~~~~~~~~--------~~~~~fw~l~~~l~~-------------------  288 (456)
                      .      .+++||+||++++++++.++.+|.+++++|+        ..++.||++++||+.                   
T Consensus       248 ~~~~~~~~~eeNf~EA~~~~~~~~~~~~ip~~i~~ll~~~~~~~~~~~s~~Fw~l~~alk~F~~~~~~g~lPl~g~lPDm  327 (529)
T d1yova1         248 KNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTIPDM  327 (529)
T ss_dssp             BCTTSSBCCCHHHHHHHHHHHHHSSCCSCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHHHTTTSSSCCCCCCCCCC
T ss_pred             cccccCCCccccHHHHHHHHHHhhCCCCCCHHHHHHhcCcccccCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Confidence            4      3678999999999999999999999999996        246789999999876                   


Q ss_pred             ------------hH-HHHHhhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcccceEeeccccccccCCCChhhHhh
Q 012768          289 ------------PW-IFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQK  355 (456)
Q Consensus       289 ------------iY-~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~  355 (456)
                                  +| .|+.+|+..|..+++++++.+|+.++.|++..++.||||++.+++++++++.+++..+.......
T Consensus       328 ~s~t~~Yi~Lq~iY~~Ka~~D~~~~~~~v~~~l~~~~~~~~~i~~~~i~~F~kn~~~l~~~~~~~l~~e~~~~~~~~~~l  407 (529)
T d1yova1         328 IADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEI  407 (529)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTTTSCEEECCCCHHHHHCTTTSCHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHhhhhhcceeccCchHhhhcccccchhHH
Confidence                        78 89999999999999999999999999999999999999999999999999999887554322111


Q ss_pred             hhccccchhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcch
Q 012768          356 YLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELH  435 (456)
Q Consensus       356 ~~~d~~~~~~~~~~~~~~al~~F~~~~gr~P~~~~~~~~~D~~~l~~~~~~i~~~~~~~~~~i~e~~v~e~~r~~~~~l~  435 (456)
                      .....+.++++.||++|||+++|.++|||+|++++.+.+.|..++..++.+++++.+++. .+++++++|+||+++++||
T Consensus       408 ~~~~~~~~~~~~l~~~~~a~~~f~~~~~r~P~~~~~~~~~d~~~l~~~~~~~~~~~~~~~-~~~~~~i~e~~r~~~~el~  486 (529)
T d1yova1         408 ISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSV-MVKDDYVHEFCRYGAAEPH  486 (529)
T ss_dssp             HHHTTSTTSTHHHHHHHHHHHHHHHHSSSCTTSSTTTHHHHHHHHHHHHHHHHHHHTCCC-CCCHHHHHHHHHTTTCCCH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHhCCCCCCccchhHhHHHHHHHHHHHHhhhccccc-cchHHHHHHHHHHcCCccc
Confidence            111223455678999999999999999999999887778899999999999999998753 6789999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhc
Q 012768          436 AVAAFIGGVASQEVIKVVF  454 (456)
Q Consensus       436 ~vaa~~GGiaaQEvIK~i~  454 (456)
                      ||||||||||||||||+||
T Consensus       487 ~vaA~~GGiaaQEviK~iT  505 (529)
T d1yova1         487 TIAAFLGGAAAQEVIKIIT  505 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999997

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-34  Score=271.92  Aligned_cols=152  Identities=18%  Similarity=0.270  Sum_probs=139.2

Q ss_pred             Cccccccc--CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH
Q 012768            2 SMSTLRIW--GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC   79 (456)
Q Consensus         2 y~RQlrlw--G~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~   79 (456)
                      |+||++||  |.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||++++
T Consensus        11 y~Rqi~l~~~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~   90 (247)
T d1jw9b_          11 YNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESAR   90 (247)
T ss_dssp             THHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHH
T ss_pred             hhceeccccCCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHH
Confidence            99999996  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccceeeEEeee
Q 012768           80 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV  155 (456)
Q Consensus        80 ~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~  155 (456)
                      ++|+++||+++++.+.......  ....++..+|+||++.++...+..++++|+++++|+|.++..|+.|++....
T Consensus        91 ~~l~~~np~~~i~~~~~~~~~~--~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~~~g~~~~~~  164 (247)
T d1jw9b_          91 DALTRINPHIAITPVNALLDDA--ELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFT  164 (247)
T ss_dssp             HHHHHHCTTSEEEEECSCCCHH--HHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEEC
T ss_pred             HHHHHhhcccchhhhhhhhhhc--cccccccccceeeeccchhhhhhhHHHHHHHhCCCcccccccccccceEEEe
Confidence            9999999999999887543211  1133456899999999999999999999999999999999999999988753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=279.24  Aligned_cols=154  Identities=23%  Similarity=0.261  Sum_probs=137.8

Q ss_pred             CcccccccCHH-HHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHH
Q 012768            2 SMSTLRIWGEQ-GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA   80 (456)
Q Consensus         2 y~RQlrlwG~~-~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~   80 (456)
                      |+|+.-.-|.+ .|.+|+++||+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||+++++
T Consensus        19 ~~~~~~~~~~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~   98 (426)
T d1yovb1          19 FTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE   98 (426)
T ss_dssp             TCCTTCCCCSSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHH
T ss_pred             CcCcccccChHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHH
Confidence            34555455544 57889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHH------------HcCCeEEEEeeccce
Q 012768           81 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICR------------EANVMLIFARSYGLT  148 (456)
Q Consensus        81 ~l~~lnp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~------------~~~ip~i~~~~~G~~  148 (456)
                      +++++||++++..+....   .+.+.+++++||+||++.++..+|..+|+.|.            +.++|+|.+++.|+.
T Consensus        99 ~l~~~np~v~i~~~~~~i---~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~~  175 (426)
T d1yovb1          99 FLNDRVPNCNVVPHFNKI---QDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFK  175 (426)
T ss_dssp             HHHHHSTTCCCEEECSCG---GGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTE
T ss_pred             HHHhhCCCCceEeeeccc---cchHHHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeeeE
Confidence            999999999998876543   33456788999999999999999999999996            567899999999999


Q ss_pred             eeEEeeeCCc
Q 012768          149 GFVRISVKEH  158 (456)
Q Consensus       149 G~v~~~~~~~  158 (456)
                      |++++..+++
T Consensus       176 G~~~vi~p~~  185 (426)
T d1yovb1         176 GNARVILPGM  185 (426)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEECCCC
Confidence            9999998774

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.80  E-value=6.1e-05  Score=60.10  Aligned_cols=93  Identities=10%  Similarity=0.143  Sum_probs=65.8

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .|++.+|+|+|.|.+|..-++.|..+|. ++++++++.-                     +.....+.  ...++  ...
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~---------------------~~~~~~~~--~~~i~--~~~   62 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFI---------------------PQFTVWAN--EGMLT--LVE   62 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCC---------------------HHHHHHHT--TTSCE--EEE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC---------------------hHHHHHHh--cCCce--eec
Confidence            4788999999999999999999999997 5888875431                     01111111  22333  232


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      ...      ..+.+.++++|++++.+......+.+.|++.++|+=
T Consensus        63 ~~~------~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          63 GPF------DETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCN  101 (113)
T ss_dssp             SSC------CGGGGTTCSEEEECCSCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCC------CHHHhCCCcEEeecCCCHHHHHHHHHHHHHcCCEEE
Confidence            211      233467899999988887777899999999999843

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.40  E-value=0.00018  Score=58.84  Aligned_cols=94  Identities=15%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      +|+|+|+|.+|..+++.|...|. .++++|.|.                   .+++    ++.+.. ++.  ++..+...
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~-------------------~~~~----~~~~~~-~~~--vi~Gd~~~   54 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICK----KASAEI-DAL--VINGDCTK   54 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHH----HHHHHC-SSE--EEESCTTS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCCh-------------------hhhh----hhhhhh-hhh--hccCcccc
Confidence            79999999999999999999996 599998544                   1222    232221 233  23222211


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEE
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIF  141 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~  141 (456)
                      ..-.....++++|.+++++.+.+.-..+...+++.+.+-+.
T Consensus        55 ~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          55 IKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             HHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             hhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEE
Confidence            11001223568999998877766666667777888776443

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00026  Score=59.15  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +|++.+|+|||.|.+|.+-++.|..+|. ++|+++++.
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~   46 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            5889999999999999999999999996 799997553

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.04  E-value=0.0005  Score=58.16  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=32.9

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .|++++|+|||+|.+|..++++|...|+++++++.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~n   55 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN   55 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEc
Confidence            47899999999999999999999999999999984

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0007  Score=51.63  Aligned_cols=90  Identities=19%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+|..|..+|+.|...|. +++++|...-...                        ..++...+.+..-. 
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~------------------------~~~~~~~~~~~~~~-   56 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPG------------------------LDKLPEAVERHTGS-   56 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTT------------------------GGGSCTTSCEEESB-
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchh------------------------HHHHhhccceeecc-
Confidence            578999999999999999999999996 4888885321110                        01122333332211 


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      .       ....+.++|+||.+..- +....+-..++++++|+|
T Consensus        57 ~-------~~~~~~~~d~vi~SPGi-~~~~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          57 L-------NDEWLMAADLIVASPGI-ALAHPSLSAAADAGIEIV   92 (93)
T ss_dssp             C-------CHHHHHHCSEEEECTTS-CTTSHHHHHHHHTTCEEE
T ss_pred             c-------chhhhccCCEEEECCCC-CCCCHHHHHHHHcCCCeE
Confidence            1       12234578999876432 112345556788899976

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00092  Score=57.61  Aligned_cols=83  Identities=13%  Similarity=0.154  Sum_probs=53.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||.|..++..|...|+++++|++.+.-                -..|+...++++..-.+.. +...+.
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~----------------~~~~~~~l~~~~~~~~~~~-~~~~~~   78 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE----------------FFDKALAFAQRVNENTDCV-VTVTDL   78 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST----------------THHHHHHHHHHHHHHSSCE-EEEEET
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH----------------HHHHHHHHHHHHHhhcCcc-eEeeec
Confidence            67899999999999999999999999999999974311                0124555555665544432 333322


Q ss_pred             Ch-hhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YP-EALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~-~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      .. ..+    .+.+.++|+||.|+.
T Consensus        79 ~~~~~~----~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          79 ADQQAF----AEALASADILTNGTK   99 (182)
T ss_dssp             TCHHHH----HHHHHTCSEEEECSS
T ss_pred             ccccch----hhhhcccceeccccC
Confidence            11 111    122457889987753

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.85  E-value=0.0015  Score=55.24  Aligned_cols=94  Identities=18%  Similarity=0.098  Sum_probs=57.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      .++|+|+|+|.+|..+|++|+..|. .++++|.+.                   .|++.    +.+-.+...+.......
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~-------------------~~a~~----l~~~~~~~~~~~~~~~~   57 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL-------------------ESAKK----LSAGVQHSTPISLDVND   57 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHH----HHTTCTTEEEEECCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh-------------------HHHHH----HHhcccccccccccccc
Confidence            5799999999999999999999998 699998433                   24433    33333433332222111


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      ...   ....+...|+++.+... .....+...|.+.+..++
T Consensus        58 ~~~---~~~~i~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~   95 (182)
T d1e5qa1          58 DAA---LDAEVAKHDLVISLIPY-TFHATVIKSAIRQKKHVV   95 (182)
T ss_dssp             HHH---HHHHHTTSSEEEECSCG-GGHHHHHHHHHHHTCEEE
T ss_pred             hhh---hHhhhhccceeEeeccc-hhhhHHHHHHHhhcccee
Confidence            111   12234567888866643 334455567777776654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.84  E-value=0.0002  Score=61.65  Aligned_cols=124  Identities=12%  Similarity=0.141  Sum_probs=69.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec-C
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-Y   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~-~   97 (456)
                      +++|.+||+|..|..+|+||...|. +++++|.+.=...++..+..-.....|...++    .+.+.-.......... .
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~ii~~~~~   76 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLE----EMVSKLKKPRRIILLVKA   76 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCEECSSHH----HHHHHBCSSCEEEECSCT
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccccccchhhhh----hhhhhhcccceEEEecCc
Confidence            5789999999999999999999998 58888854432222222211111112222222    2223322222222111 1


Q ss_pred             hhh---hhcCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768           98 PEA---LIEMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus        98 ~~~---~~~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      ...   +...-...++.=++||.+ +.+......+.+.+.+.++.++.+...|-
T Consensus        77 ~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg  130 (176)
T d2pgda2          77 GQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGG  130 (176)
T ss_dssp             THHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             hHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccC
Confidence            111   110001223444677754 45566677888899999999999877654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.76  E-value=0.00086  Score=57.26  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +++|+|+|+|.+|+.+|..|++.|. .++++|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~   33 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   33 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4799999999999999999999996 78898843

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00068  Score=57.25  Aligned_cols=36  Identities=17%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEe
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIG-SITVID   50 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD   50 (456)
                      .++.+.||.|+|+|.+|+.+|-.|+..|.. .+.|+|
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D   51 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVD   51 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEEC
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            457788999999999999999999999986 599998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.63  E-value=0.0041  Score=51.97  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ++.||.|||+|.+|+.+|-.|.+.|+..+.|+|
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D   38 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYD   38 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEE
Confidence            468999999999999999999999999999998

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.0016  Score=55.32  Aligned_cols=33  Identities=12%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ++++|+|+|+||.|..++..|...|+++|+|++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~n   48 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA   48 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence            577999999999999999999999999999985

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.51  E-value=0.0062  Score=50.59  Aligned_cols=32  Identities=25%  Similarity=0.454  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ++||.|||+|.+|+.+|-.|++.|+..+.|+|
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D   34 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFD   34 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            57999999999999999999999999999998

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.49  E-value=0.0023  Score=53.24  Aligned_cols=33  Identities=30%  Similarity=0.441  Sum_probs=30.0

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEe
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIG-SITVID   50 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD   50 (456)
                      ...||.|||+|.+|+.+|-.|++.|.. ++.|+|
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~D   38 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLID   38 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            467899999999999999999999974 699998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0031  Score=53.47  Aligned_cols=73  Identities=12%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||.+..++..|...|+ +|+|++          |+         ..|++.+++.+.+.++   +.....
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~n----------Rt---------~~ka~~l~~~~~~~~~---~~~~~~   72 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITN----------RT---------VSRAEELAKLFAHTGS---IQALSM   72 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC----------SS---------HHHHHHHHHHTGGGSS---EEECCS
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccce-EEEecc----------ch---------HHHHHHHHHHHhhccc---cccccc
Confidence            567899999999999999999999998 599984          22         2477777766665543   232221


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      .  .      .....+|+||.|+.
T Consensus        73 ~--~------~~~~~~dliIN~Tp   88 (170)
T d1nyta1          73 D--E------LEGHEFDLIINATS   88 (170)
T ss_dssp             G--G------GTTCCCSEEEECCS
T ss_pred             c--c------ccccccceeecccc
Confidence            1  1      11347899997764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.39  E-value=0.0086  Score=50.27  Aligned_cols=97  Identities=11%  Similarity=-0.049  Sum_probs=57.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|+|||+|-+|+.+|++|...|.. +++.+|.+.-                       ..+.+++.+---.+.  . .. 
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~-----------------------~~~~a~~~~~~~~~~--~-~~-   55 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE-----------------------SISKAVDLGIIDEGT--T-SI-   55 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH-----------------------HHHHHHHTTSCSEEE--S-CG-
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH-----------------------HHHHHHHhhcchhhh--h-hh-
Confidence            699999999999999999999974 6777774321                       113333343211111  1 11 


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                           ........|+|+.|.........+.++....+..-+...+.+..+
T Consensus        56 -----~~~~~~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~  100 (171)
T d2g5ca2          56 -----AKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKG  100 (171)
T ss_dssp             -----GGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCT
T ss_pred             -----hhhhccccccccccCCchhhhhhhhhhhccccccccccccccccH
Confidence                 111123678999888765555556665554444334444444444

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.35  E-value=0.003  Score=52.32  Aligned_cols=31  Identities=19%  Similarity=0.448  Sum_probs=28.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC-CcEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGI-GSITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD   50 (456)
                      .||.|||+|.+|+.+|-.|+..|. .++.|+|
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   33 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFID   33 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            689999999999999999999995 6799988

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.33  E-value=0.0028  Score=53.37  Aligned_cols=35  Identities=9%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGI-GSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD   50 (456)
                      .+.+.||.|||+|.+|+.+|-.|+..|+ ..+.|+|
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD   52 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVD   52 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence            3567899999999999999999999998 5699998

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.32  E-value=0.00067  Score=57.36  Aligned_cols=116  Identities=22%  Similarity=0.257  Sum_probs=66.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh-
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP-   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~-   98 (456)
                      .+|.+||+|-.|+.+|+||...|. +++++|.+.-...++...        |........+.+.  ..++-+..+.... 
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~--------~~~~~~~~~e~~~--~~diii~~v~~~~~   70 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA--------GASAARSARDAVQ--GADVVISMLPASQH   70 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT--------TCEECSSHHHHHT--SCSEEEECCSCHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhh--------hccccchhhhhcc--ccCeeeecccchhh
Confidence            369999999999999999999997 688888554322222111        1111111111111  1122222222111 


Q ss_pred             -hhhhcCC---cCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           99 -EALIEMN---PPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        99 -~~~~~~~---~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                       ..+....   ...+..=++||++ +.+.+....+.+.++++++.|+.+...|
T Consensus        71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~G  123 (162)
T d3cuma2          71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSG  123 (162)
T ss_dssp             HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEES
T ss_pred             HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEeccccc
Confidence             1111111   1123444677754 5666778899999999999999988777

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.30  E-value=0.0078  Score=48.42  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      ++++|+|+|.+|..+++.|...|.. ++++|.|.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-CEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe-EEEecCcH
Confidence            4789999999999999999999984 88888665

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.27  E-value=0.0085  Score=50.12  Aligned_cols=79  Identities=9%  Similarity=0.072  Sum_probs=49.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      ||.|||+|-+|+.+|+.|...|. +++.+|.+.                   .++    +...+...--.   ..     
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~-------------------~~~----~~a~~~~~~~~---~~-----   49 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------STC----EKAVERQLVDE---AG-----   49 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHH----HHHHHTTSCSE---EE-----
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCc-------------------hHH----HHHHHhhccce---ee-----
Confidence            69999999999999999999997 577777432                   111    22333332111   11     


Q ss_pred             hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH
Q 012768          101 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE  134 (456)
Q Consensus       101 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~  134 (456)
                         .+.+.++++|+||.+.........++++...
T Consensus        50 ---~~~~~~~~~DiIilavp~~~~~~vl~~l~~~   80 (165)
T d2f1ka2          50 ---QDLSLLQTAKIIFLCTPIQLILPTLEKLIPH   80 (165)
T ss_dssp             ---SCGGGGTTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             ---eecccccccccccccCcHhhhhhhhhhhhhh
Confidence               1234467899999888654445555655443

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.09  E-value=0.013  Score=48.18  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh----CCCCEEEEE
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL----NDAVKAKFI   94 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l----np~v~v~~~   94 (456)
                      ||.|+|+ |.+|+.+|-.|+..|+ +.+.|+|-+.                 +..|++..+.-|...    .+.+++...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~-----------------~~~~~~g~a~Dl~~~~~~~~~~~~~~~~   64 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH-----------------SINKLEGLREDIYDALAGTRSDANIYVE   64 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG-----------------GHHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh-----------------hhHhhhcccccchhcccccccCCccccC
Confidence            6999996 9999999999999996 7999998321                 224666555555543    345555543


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      ..       ++.+.++++|+||.|.
T Consensus        65 ~~-------~d~~~l~~aDvVVitA   82 (145)
T d1hyea1          65 SD-------ENLRIIDESDVVIITS   82 (145)
T ss_dssp             ET-------TCGGGGTTCSEEEECC
T ss_pred             Cc-------chHHHhccceEEEEec
Confidence            32       1234567899999763

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.07  E-value=0.015  Score=47.52  Aligned_cols=30  Identities=17%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD   50 (456)
                      ||.|||+|.+|+.++-.|+..|. ..+.|+|
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~D   32 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLD   32 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEec
Confidence            79999999999999999999996 6899998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.05  E-value=0.013  Score=48.20  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCC-CcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv-~~itlvD~   51 (456)
                      ++.||.|||+|.+|+.+|..|+..|+ ..+.|+|-
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~   38 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV   38 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeec
Confidence            36799999999999999999999996 57999983

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.00  E-value=0.015  Score=47.53  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=29.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .||.|||+|.+|+.+|-.|+..|+..+.++|
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D   32 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEe
Confidence            5899999999999999999999999999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.016  Score=47.37  Aligned_cols=30  Identities=27%  Similarity=0.494  Sum_probs=27.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD   50 (456)
                      ||.|||+|.+|+.+|-.|+..|. .++.|+|
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D   32 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLID   32 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            79999999999999999999998 4699998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.87  E-value=0.0066  Score=49.97  Aligned_cols=31  Identities=23%  Similarity=0.361  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD   50 (456)
                      +||.|||+|.+|+.+|-.|++.|+. .+.|+|
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D   33 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLED   33 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence            5899999999999999999999995 699988

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.87  E-value=0.0058  Score=51.88  Aligned_cols=73  Identities=16%  Similarity=0.183  Sum_probs=51.8

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++|+|+|+||.|-.++..|.. |..+++|+.          |+         ..|++.+++.+....   .+.....
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~n----------R~---------~~~a~~l~~~~~~~~---~~~~~~~   72 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLAN----------RT---------FSKTKELAERFQPYG---NIQAVSM   72 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEE----------SS---------HHHHHHHHHHHGGGS---CEEEEEG
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc-cCceeeecc----------ch---------HHHHHHHHHHHhhcc---ccchhhh
Confidence            577899999999999999999986 668999984          32         247777777776543   3333322


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      .        ...+.++|+||.|+.
T Consensus        73 ~--------~~~~~~~diiIN~tp   88 (171)
T d1p77a1          73 D--------SIPLQTYDLVINATS   88 (171)
T ss_dssp             G--------GCCCSCCSEEEECCC
T ss_pred             c--------cccccccceeeeccc
Confidence            1        112468999998764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.82  E-value=0.0073  Score=49.73  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCC-CcEEEEe
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGI-GSITVID   50 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv-~~itlvD   50 (456)
                      +||.|+|+ |.+|+.+|-.|+..|+ +++.|+|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD   33 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD   33 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence            68999996 9999999999999998 8899998

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.78  E-value=0.019  Score=47.00  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCC-CcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGI-GSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv-~~itlvD   50 (456)
                      ||.|||+|.+|+.+|-.|+..|. ..+.|+|
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   32 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence            79999999999999999998887 6799998

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.78  E-value=0.0043  Score=52.98  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=32.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+||+|||.|..|.++|..|.+.|...++|+|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            36899999999999999999999999989999854

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.013  Score=49.35  Aligned_cols=96  Identities=16%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      ..+|+|+|+|++|.-++..+...|..+++++|.+.                   .|.    +..+++..+..+...+.++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~-------------------~rl----~~a~~~Ga~~~~~~~~~~~   83 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA-------------------TRL----SKAKEIGADLVLQISKESP   83 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH-------------------HHH----HHHHHTTCSEEEECSSCCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH-------------------HHH----HHHHHhCCccccccccccc
Confidence            46899999999999999999999999999998332                   122    2333444333322222222


Q ss_pred             hhhhcC-CcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCC
Q 012768           99 EALIEM-NPPFFSQFTLVVATQLGEEKMIKLDRICREANV  137 (456)
Q Consensus        99 ~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~i  137 (456)
                      ...... ....=.++|+||.|..+.......-+.++..+.
T Consensus        84 ~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~  123 (171)
T d1pl8a2          84 QEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGT  123 (171)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCE
T ss_pred             ccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCE
Confidence            111100 001113789999999886665555556655543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.01  Score=49.31  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .||+|+|+|++|+.++..|..+|. .++++|.+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCH
Confidence            379999999999999999999997 699998654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.58  E-value=0.0097  Score=49.20  Aligned_cols=30  Identities=23%  Similarity=0.244  Sum_probs=27.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|.+||+|-+|..++++|..+|-.++.+.|
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~   31 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEe
Confidence            699999999999999999999977888776

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.49  E-value=0.015  Score=45.91  Aligned_cols=32  Identities=13%  Similarity=0.177  Sum_probs=28.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|+|.|.+|+|+|..|...|. ++|+++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc-cceeeeh
Confidence            3689999999999999999999997 5999874

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.027  Score=47.98  Aligned_cols=90  Identities=16%  Similarity=0.293  Sum_probs=54.9

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcch----HHHHHHHHHHhCCCCEEE
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESK----AKSVCAFLQELNDAVKAK   92 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~K----a~~~~~~l~~lnp~v~v~   92 (456)
                      -..++|+|||.|+.|.+.|..|++.|. ++||+|.+..    ++-++.+...--++..    .+...+.++.+  .|++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~----~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~--gV~i~  113 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSE----IGGQFNIAKQIPGKEEFYETLRYYRRMIEVT--GVTLK  113 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS----SCTTHHHHTTSTTCTTHHHHHHHHHHHHHHH--TCEEE
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCc----cCceEEEEEeCcccchHHHHHHHHHHhhhcC--CeEEE
Confidence            456899999999999999999999996 7999986543    3434322111112222    23344455544  35554


Q ss_pred             EEecChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           93 FIEEYPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                      .-.    .+   ..+...+||.||.++.
T Consensus       114 l~~----~V---t~~~~~~~d~vilAtG  134 (179)
T d1ps9a3         114 LNH----TV---TADQLQAFDETILASG  134 (179)
T ss_dssp             ESC----CC---CSSSSCCSSEEEECCC
T ss_pred             eCC----EE---cccccccceeEEEeec
Confidence            321    11   2334568888887654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.23  E-value=0.034  Score=43.95  Aligned_cols=57  Identities=11%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN   86 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln   86 (456)
                      .++|+|||.|.+|+|+|..|...|. ++|+++...-   =+.+.       .++.-++.+.+.+++.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~---~l~~~-------~~~~~~~~~~~~l~~~G   86 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR---LMSRA-------APATLADFVARYHAAQG   86 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS---TTTTT-------SCHHHHHHHHHHHHTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc---ccccc-------CCHHHHHHHHHHHHHCC
Confidence            5799999999999999999999996 5999874331   12221       23344556666776653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.20  E-value=0.015  Score=47.60  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~   51 (456)
                      +.||.|||+|.+|+.+|-.|+..|.. .+.|+|-
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~   34 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDV   34 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEec
Confidence            36899999999999999999999985 5999983

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.13  E-value=0.0093  Score=50.70  Aligned_cols=78  Identities=8%  Similarity=0.097  Sum_probs=50.0

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      ++++++|+|+|+||++..++..|  .+.++|+|+..          +         ..|++.++..+....+.-.+..+.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~nR----------~---------~~ka~~l~~~~~~~~~~~~~~~~~   73 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIANR----------T---------VEKAEALAKEIAEKLNKKFGEEVK   73 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEECS----------S---------HHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH--ccccceeeehh----------h---------hhHHHHHHHHHHHhhchhhhhhhh
Confidence            47899999999999999998776  56779998742          2         247777777776543321100000


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCC
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQL  120 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~  120 (456)
                           + ..-...+.++|+||.|+.
T Consensus        74 -----~-~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          74 -----F-SGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             -----E-ECTTCCCTTCCEEEECSC
T ss_pred             -----h-hhhhhccchhhhhccCCc
Confidence                 0 011233557899997764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.08  E-value=0.014  Score=49.50  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCcccc---c-cccccCcchHHHHHHHHHHhCCCCEEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFM---L-DESCVGESKAKSVCAFLQELNDAVKAKFIE   95 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~---~-~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~   95 (456)
                      .+|.|||+|-.|+.+|++|+..|.. ++++|.+.-....+.....   . ....... .   ....+..+.....+....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAGNLKAFE-T---MEAFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGGGEEECS-C---HHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCccccccchhhhh-h---hhHHHHhcccceEEEEee
Confidence            4799999999999999999999975 7888854322221111100   0 0000111 1   112223333322222221


Q ss_pred             cChhhh---hcCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           96 EYPEAL---IEMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        96 ~~~~~~---~~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      .....+   .......+..=++++.+ +........+.+.+...++-++.+...|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          77 QAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             CCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             cCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            111000   00111224444577754 4556667788888889999999887766

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.06  E-value=0.063  Score=43.71  Aligned_cols=31  Identities=23%  Similarity=0.460  Sum_probs=28.1

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCC-cEEEEe
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIG-SITVID   50 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~-~itlvD   50 (456)
                      +||.|+| +|.+|+.+|-.|+..|+. .+.|+|
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D   33 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVD   33 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence            6899999 699999999999999986 488887

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.06  E-value=0.0077  Score=51.32  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|+|+|++|..++.-+-..|.++++++|.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~   61 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG   61 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CCEEEEECCCccchhheeccccccccccccccc
Confidence            578999999999999999999999999999984

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.02  Score=51.66  Aligned_cols=61  Identities=11%  Similarity=0.089  Sum_probs=48.2

Q ss_pred             HHHHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEE
Q 012768           13 GQAALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKA   91 (456)
Q Consensus        13 ~q~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v   91 (456)
                      +|++|+++.|+|.| .+|+|.++|+.|++.|. ++.+.|.+                   ..|.+.+++.+++.++..++
T Consensus         4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~   63 (257)
T d1xg5a_           4 GMERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTL   63 (257)
T ss_dssp             TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEE
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCceE
Confidence            56789999999998 67899999999999998 58887632                   24777788888877765554


Q ss_pred             EE
Q 012768           92 KF   93 (456)
Q Consensus        92 ~~   93 (456)
                      ..
T Consensus        64 ~~   65 (257)
T d1xg5a_          64 IP   65 (257)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.95  E-value=0.0028  Score=53.17  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=65.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC--h
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY--P   98 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~--~   98 (456)
                      +|.|||+|-.|..+|+||+..|.. ++++|.+.-....+..+        |...+....+.++  +.++-+..+...  .
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~--------~~~~~~~~~e~~~--~~d~ii~~v~~~~~v   70 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIAA--------GAETASTAKAIAE--QCDVIITMLPNSPHV   70 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHT--------TCEECSSHHHHHH--HCSEEEECCSSHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHh--------hhhhcccHHHHHh--CCCeEEEEcCCHHHH
Confidence            699999999999999999999985 78887543322222111        1111111112222  223333333211  1


Q ss_pred             hhhhc-CC--cCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768           99 EALIE-MN--PPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus        99 ~~~~~-~~--~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      ..+.. .+  ...+..-++||.+ +.+......+.+.+.+.++-++.+...|
T Consensus        71 ~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~g  122 (161)
T d1vpda2          71 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG  122 (161)
T ss_dssp             HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEES
T ss_pred             HHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccC
Confidence            11110 11  1223444677754 4556667788888999999988887665

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.053  Score=44.40  Aligned_cols=93  Identities=12%  Similarity=0.057  Sum_probs=56.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHH-hCCCCEEEEEecC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE-LNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~-lnp~v~v~~~~~~   97 (456)
                      +-||+|+|+|.+|..+++.|...|.. ++++|.|.-                   +..   +.+.+ ..+.+.+-  ..+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~~-------------------~~~---~~~~~~~~~~~~vi--~Gd   57 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNLPE-------------------DDI---KQLEQRLGDNADVI--PGD   57 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCH-------------------HHH---HHHHHHHCTTCEEE--ESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccch-------------------hHH---HHHHHhhcCCcEEE--Ecc
Confidence            56899999999999999999999975 778875431                   111   22222 23345433  222


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN  136 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~  136 (456)
                      +....-....-+.+++.||++..+...-..+...+++.+
T Consensus        58 ~~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~   96 (153)
T d1id1a_          58 SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMS   96 (153)
T ss_dssp             TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHhccccCCEEEEccccHHHHHHHHHHHHHhC
Confidence            211000011225678999988777666556666676653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.84  E-value=0.03  Score=47.91  Aligned_cols=79  Identities=14%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFI   94 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~   94 (456)
                      .|++++|+|.| .||+|.++++.|+..|. +++++|.+.                   .|.+.+++.+.+.. .+.+...
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~~   78 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL-------------------DKAQAAADSVNKRF-KVNVTAA   78 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHH-TCCCEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch-------------------HHHHHHHHHHHhcc-chhhhhh
Confidence            57899999999 69999999999999996 688886332                   35556666665532 2332222


Q ss_pred             ec-ChhhhhcCCcCCCCCCcEEEEcC
Q 012768           95 EE-YPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        95 ~~-~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      +. +...+    .+.+.+.|+||.+.
T Consensus        79 d~~~~~~~----~~~~~~iDilin~A  100 (191)
T d1luaa1          79 ETADDASR----AEAVKGAHFVFTAG  100 (191)
T ss_dssp             ECCSHHHH----HHHTTTCSEEEECC
T ss_pred             hcccHHHH----HHHhcCcCeeeecC
Confidence            21 11121    23467889998664

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.70  E-value=0.025  Score=47.75  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=31.2

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...+|+|+|+|++|.-.+.-+-..|..+++.+|.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            35689999999999999999999999999999843

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.12  Score=45.17  Aligned_cols=38  Identities=32%  Similarity=0.531  Sum_probs=31.8

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCC-CcEEEEeCCc
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGI-GSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv-~~itlvD~d~   53 (456)
                      ++++.+|+|.| .|-+|+++++.|..-|. .+++++..+.
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            57889999999 56699999999999886 5898887543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.60  E-value=0.02  Score=44.91  Aligned_cols=44  Identities=25%  Similarity=0.359  Sum_probs=35.3

Q ss_pred             cccCHHHHHHHhc--CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768            7 RIWGEQGQAALEK--ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus         7 rlwG~~~q~~L~~--~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++|-.+..-.+++  .+|+|||.|.+|+|+|..|...|.. +|+++.
T Consensus         8 ~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve~   53 (117)
T d1ebda2           8 RILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTK-VTILEG   53 (117)
T ss_dssp             SEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccE-EEEEEe
Confidence            4566555555555  6899999999999999999999965 999873

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.59  E-value=0.018  Score=49.59  Aligned_cols=32  Identities=13%  Similarity=0.091  Sum_probs=27.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|+|+|..|+.+|..|+..|- .++|++.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEec
Confidence            479999999999999999999885 68888643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.48  E-value=0.031  Score=47.30  Aligned_cols=33  Identities=18%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|+|+||+|.-.+.-+...|.++|..+|.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~   62 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL   62 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecC
Confidence            567999999999999999999999999999983

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.45  E-value=0.044  Score=45.16  Aligned_cols=123  Identities=17%  Similarity=0.096  Sum_probs=63.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChhh
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA  100 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  100 (456)
                      ||.+||+|-.|..+|+||+..|.  .++++...-...++...       .|....  ..+.+  .+.++-+.... ....
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~--~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~--~~~~~~i~~~~-~~~~   67 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP--TLVWNRTFEKALRHQEE-------FGSEAV--PLERV--AEARVIFTCLP-TTRE   67 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC--EEEECSSTHHHHHHHHH-------HCCEEC--CGGGG--GGCSEEEECCS-SHHH
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC--EEEEeCCHHHHHHHHHH-------cCCccc--ccccc--cceeEEEeccc-chhh
Confidence            79999999999999999998874  44444222111111100       000000  00000  01122221111 1111


Q ss_pred             hhc---CCcCCCCCCcEEE-EcCCChHHHHHHHHHHHHcCCeEEEEeeccc-----eeeEEeeeCC
Q 012768          101 LIE---MNPPFFSQFTLVV-ATQLGEEKMIKLDRICREANVMLIFARSYGL-----TGFVRISVKE  157 (456)
Q Consensus       101 ~~~---~~~~~~~~~dvVi-~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~-----~G~v~~~~~~  157 (456)
                      +..   .-.....+-.++| +++.+......+.+.+.+.++.++.+-..|.     .|.+.+..++
T Consensus        68 v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG  133 (156)
T d2cvza2          68 VYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG  133 (156)
T ss_dssp             HHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEES
T ss_pred             hhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeC
Confidence            110   0112233445666 4456667778899999999999999877664     3444444444

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.30  E-value=0.085  Score=42.07  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=26.4

Q ss_pred             CCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecc
Q 012768          109 FSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYG  146 (456)
Q Consensus       109 ~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G  146 (456)
                      +.++|+||+-+.+ +......++|.++++|+|. ++.|
T Consensus        39 ~~~~DVvIDFS~p-~~~~~~l~~~~~~~~p~Vi-GTTG   74 (128)
T d1vm6a3          39 LDSPDVVIDFSSP-EALPKTVDLCKKYRAGLVL-GTTA   74 (128)
T ss_dssp             CSCCSEEEECSCG-GGHHHHHHHHHHHTCEEEE-CCCS
T ss_pred             hccCCEEEEecCH-HHHHHHHHHHHhcCCCEEE-EcCC
Confidence            4578999987766 4556677799999999664 4555

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.032  Score=43.70  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++|+|||.|.+|+|+|..|.+.|. ++|+++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            689999999999999999999997 79999753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.15  E-value=0.02  Score=52.20  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=32.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      .+|+|||+|.+|+.+|..|++.|.++++|+|.+.+
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~   36 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   36 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            37999999999999999999999999999997754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.10  E-value=0.06  Score=44.07  Aligned_cols=29  Identities=14%  Similarity=0.178  Sum_probs=25.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ||.|||+|-.|+.+|++|...|.. ++++|
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~-v~~~~   30 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE-VVTSL   30 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE-EEECC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe-EEEEc
Confidence            799999999999999999999873 55554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.00  E-value=0.071  Score=40.27  Aligned_cols=88  Identities=15%  Similarity=0.139  Sum_probs=53.8

Q ss_pred             hcCcEEEEcCChhH-HHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           18 EKASVCLLNCGPTG-SETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        18 ~~~~VlIiG~gglG-~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +..+|.++|.||+| +.+|+.|...|. .++--|.        ..+              ...+.|.+.  .+++..  .
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~--------~~~--------------~~~~~L~~~--Gi~v~~--g   59 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDI--------ADG--------------VVTQRLAQA--GAKIYI--G   59 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEES--------CCS--------------HHHHHHHHT--TCEEEE--S
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeC--------CCC--------------hhhhHHHHC--CCeEEE--C
Confidence            45789999999999 777999999998 4666652        222              112556655  355432  1


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           97 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      +       .++.+.+.|+||.+..-...--. -..|+++++|+|
T Consensus        60 ~-------~~~~i~~~d~vV~S~AI~~~npe-l~~A~~~gipii   95 (96)
T d1p3da1          60 H-------AEEHIEGASVVVVSSAIKDDNPE-LVTSKQKRIPVI   95 (96)
T ss_dssp             C-------CGGGGTTCSEEEECTTSCTTCHH-HHHHHHTTCCEE
T ss_pred             C-------ccccCCCCCEEEECCCcCCCCHH-HHHHHHcCCCEE
Confidence            1       12234578898876431111111 235789999976

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.99  E-value=0.041  Score=47.95  Aligned_cols=40  Identities=25%  Similarity=0.500  Sum_probs=32.7

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcE--EEEeCCccccc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSI--TVIDGSKVEVG   57 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~i--tlvD~d~v~~~   57 (456)
                      .+.+|.|||+||.|+.++.+|.+.|+..+  ..+|.|.-...
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~   55 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLI   55 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHH
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHh
Confidence            56899999999999999999999999765  45677654443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.91  E-value=0.043  Score=46.12  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ...+|+|+|+|++|..++..+-..|...+.+.|.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            4567999999999999999999999999999873

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.89  E-value=0.064  Score=45.09  Aligned_cols=33  Identities=12%  Similarity=0.205  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|+|+||+|.-.+..+...|..++..+|.
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~   60 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT   60 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCC
Confidence            456999999999999999999999999999984

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.86  E-value=0.023  Score=49.28  Aligned_cols=32  Identities=22%  Similarity=0.449  Sum_probs=29.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|+|||+|..|...|..|.+.|+.+++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999999999853

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.82  E-value=0.18  Score=37.35  Aligned_cols=88  Identities=14%  Similarity=0.097  Sum_probs=53.8

Q ss_pred             cCcEEEEcCChhH-HHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNCGPTG-SETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gglG-~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      +.||-++|.||+| +.+|+-|...|. .++--|        +..+              ...++|+++.  +++..  .+
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD--------~~~~--------------~~t~~L~~~G--i~i~~--gh   53 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGN-DVYGSN--------IEET--------------ERTAYLRKLG--IPIFV--PH   53 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEC--------SSCC--------------HHHHHHHHTT--CCEES--SC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCC-eEEEEe--------CCCC--------------hhHHHHHHCC--CeEEe--ee
Confidence            3589999999998 478999999998 355544        3322              1224576664  44321  11


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEE
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIF  141 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~  141 (456)
                             +.+.+.+.|+||.+..-...- -.-..+++.++|+++
T Consensus        54 -------~~~~i~~~d~vV~SsAI~~~n-pel~~A~~~gIpv~~   89 (89)
T d1j6ua1          54 -------SADNWYDPDLVIKTPAVRDDN-PEIVRARMERVPIEN   89 (89)
T ss_dssp             -------CTTSCCCCSEEEECTTCCTTC-HHHHHHHHTTCCEEE
T ss_pred             -------cccccCCCCEEEEecCcCCCC-HHHHHHHHcCCCccC
Confidence                   234466889999764311111 113468899999763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.1  Score=44.58  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=29.0

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .-+||+|+|+ |.+|+.+++.|...|. ++++++.+.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~   37 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDS   37 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcCh
Confidence            3578999995 7799999999999996 688886543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.78  E-value=0.039  Score=43.56  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|+|.|.+|+|+|..|...|. ++|+++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            4789999999999999999999996 58998743

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.78  E-value=0.034  Score=44.02  Aligned_cols=32  Identities=19%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+++|||.|.+|+|+|..|.+.|. ++||+..+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            589999999999999999999997 69998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.71  E-value=0.03  Score=44.43  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .++|+|+|.|.+|+|+|..|...|.. +|+++..
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~   62 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDIL   62 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceE-EEEEEec
Confidence            46899999999999999999999975 9999753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.66  E-value=0.037  Score=48.48  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      +++|+|||+|..|..+|..|...|. +++|+|.+.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            4689999999999999999999999 6999997654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.55  E-value=0.15  Score=42.07  Aligned_cols=95  Identities=13%  Similarity=0.083  Sum_probs=56.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec--
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE--   96 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~--   96 (456)
                      ..+|+|+|+|++|.-++..+...|. +++.+|.+.                   .|.    +.++++..+..+.....  
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~-------------------~r~----~~a~~~ga~~~~~~~~~~~   82 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSP-------------------RRL----EVAKNCGADVTLVVDPAKE   82 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHH----HHHHHTTCSEEEECCTTTS
T ss_pred             CCEEEEEcccccchhhHhhHhhhcc-cccccchHH-------------------HHH----HHHHHcCCcEEEecccccc
Confidence            5789999999999999999999997 788887332                   122    33444554433221110  


Q ss_pred             ChhhhhcC-CcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCC
Q 012768           97 YPEALIEM-NPPFFSQFTLVVATQLGEEKMIKLDRICREANV  137 (456)
Q Consensus        97 ~~~~~~~~-~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~i  137 (456)
                      ......+. ....-.++|+||.|..+.......-+.++..+.
T Consensus        83 ~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~  124 (170)
T d1e3ja2          83 EESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGT  124 (170)
T ss_dssp             CHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCE
T ss_pred             ccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCc
Confidence            00000000 000123689999998876665555566666654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.41  E-value=0.035  Score=43.31  Aligned_cols=31  Identities=16%  Similarity=0.196  Sum_probs=28.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|+|+|.|.+|+|+|..|...|. ++|+++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~   52 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEA   52 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEee
Confidence            689999999999999999999997 5999875

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=93.29  E-value=0.094  Score=44.98  Aligned_cols=36  Identities=11%  Similarity=0.338  Sum_probs=29.9

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcE--EEEeCCcccc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSI--TVIDGSKVEV   56 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~i--tlvD~d~v~~   56 (456)
                      ||.|||+||.|+.++.+|...|+..+  ..+|.|.-..
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L   39 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVL   39 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHH
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHH
Confidence            79999999999999999999999754  5677666443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.2  Score=45.71  Aligned_cols=102  Identities=13%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             cCcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLNCGP-TGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG~gg-lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ++||||.|++| +|+.+++.|...|. +++.+|...       ..   ..            +.+........+...+..
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~~~-------~~---~~------------~~~~~~~~~~~~d~~~~~   57 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFF-------TG---RK------------RNVEHWIGHENFELINHD   57 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS-------SC---CG------------GGTGGGTTCTTEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCC-------cC---CH------------HHHHHhcCCCceEEEehH
Confidence            47899999655 99999999999986 477777311       00   00            111122223344443332


Q ss_pred             hhhhhcCCcCCCCCCcEEEEc-C-C-------ChHH--------HHHHHHHHHHcCCeEEEEeecccee
Q 012768           98 PEALIEMNPPFFSQFTLVVAT-Q-L-------GEEK--------MIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~-~-~-------~~~~--------~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      .      ....+.++|+||-+ . .       +...        ...|-+.|++.++.+|.+++...+|
T Consensus        58 ~------~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~  120 (312)
T d2b69a1          58 V------VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYG  120 (312)
T ss_dssp             T------TSCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGB
T ss_pred             H------HHHHHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheec
Confidence            1      12234578999833 1 1       1111        2345568888899999999988877

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.14  E-value=0.038  Score=43.72  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=29.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .++++|||.|.+|+|+|..|...|.. +|+++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEF   54 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcc-eeEEEe
Confidence            36899999999999999999999995 999874

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.11  E-value=0.2  Score=42.01  Aligned_cols=92  Identities=13%  Similarity=0.152  Sum_probs=53.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEE-EEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSIT-VIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~it-lvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      -||.|||+|..|...++.|...+=-.++ ++|.                   ...|++.+++... +.+..++  .+ +.
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~-------------------~~~~~~~~~~~~~-~~~~~~~--~~-~~   58 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASR-------------------SLEKAKAFATANN-YPESTKI--HG-SY   58 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECS-------------------SHHHHHHHHHHTT-CCTTCEE--ES-SH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeC-------------------Cccccccchhccc-cccceee--cC-cH
Confidence            3799999999999999999776321222 3332                   2234443332211 2233332  22 33


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      +++.++     .+.|+|+.++.+ .....+...|.++|++++
T Consensus        59 ~~ll~~-----~~iD~v~I~tp~-~~h~~~~~~~l~~g~~v~   94 (184)
T d1ydwa1          59 ESLLED-----PEIDALYVPLPT-SLHVEWAIKAAEKGKHIL   94 (184)
T ss_dssp             HHHHHC-----TTCCEEEECCCG-GGHHHHHHHHHTTTCEEE
T ss_pred             HHhhhc-----cccceeeecccc-hhhcchhhhhhhccceee
Confidence            333221     257899888755 456677778888888854

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.08  E-value=0.056  Score=45.73  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=25.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVI   49 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlv   49 (456)
                      +|.|+|+|..|+.+|..|+..|. .++++
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~   29 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIW   29 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEE
Confidence            79999999999999999999985 57776

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.93  E-value=0.049  Score=43.70  Aligned_cols=33  Identities=15%  Similarity=0.331  Sum_probs=29.9

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .++|+|||.|.+|+|+|..|...|. ++|+++..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~   67 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTA   67 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCc-ceeeeeec
Confidence            5789999999999999999999998 49999853

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.92  E-value=0.039  Score=49.77  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +.+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            4689999999999999999999999 699998643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.77  E-value=0.15  Score=42.47  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .+|+|+|+||+|.-.+..+...|..++..+|.+
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            579999999999999999999999999999843

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.73  E-value=0.049  Score=44.94  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=31.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~   53 (456)
                      ..||+|||.|.+|.|+|..|.+.|-. +||++|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            46999999999999999999999974 799998654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.54  E-value=0.1  Score=43.77  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|+|+|++|.-.+.-+-..|.+.+++.|..
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            3689999999999999999999999999999843

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.51  E-value=0.2  Score=42.98  Aligned_cols=38  Identities=8%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCc--EEEEeCCccccc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGS--ITVIDGSKVEVG   57 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~--itlvD~d~v~~~   57 (456)
                      +.|.|||.||.|+.++..|.+.|+..  +..+|.|.-..+
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~   41 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALK   41 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGS
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHh
Confidence            67999999999999999999999865  455676654443

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.45  E-value=0.36  Score=40.10  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=54.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHc-----CCCcEEEEeCCcccccCCCccccccccccCcchH----HHHHHHHHHhCCCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLG-----GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA----KSVCAFLQELNDAV   89 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~-----Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka----~~~~~~l~~lnp~v   89 (456)
                      +.+|.|||+|++|...+-...+.     .++.++|+|-|                   +.|+    +.+.......+...
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did-------------------~~~~~~~~~~~~~~~~~~~~~~   63 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND-------------------KERQDRIAGACDVFIREKAPDI   63 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC-------------------HHHHHHHHHHHHHHHHHHCTTS
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC-------------------hhHHHHHHHHHHHHHHHhCCCc
Confidence            56899999999986533222222     23589999832                   3344    44445555567777


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCCCh--HHHHHHHHHHHHcCC
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGE--EKMIKLDRICREANV  137 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~--~~~~~l~~~~~~~~i  137 (456)
                      ++......        .+.++++|+||.+....  +.+.+...+..++|+
T Consensus        64 ~~~~~~d~--------~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          64 EFAATTDP--------EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             EEEEESCH--------HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             ceEecCCh--------hhccCCCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence            76654321        12356899999876542  234444556666665

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.43  E-value=0.048  Score=48.38  Aligned_cols=32  Identities=22%  Similarity=0.465  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+||+|||+|..|...|..|++.|. +++|+|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            3789999999999999999999998 6999985

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.062  Score=42.52  Aligned_cols=31  Identities=13%  Similarity=0.086  Sum_probs=28.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++|+|+|.|.+|+|+|..|...|. ++|+++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~   53 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIR   53 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEee
Confidence            689999999999999999999997 5999875

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.28  E-value=0.052  Score=47.87  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=30.1

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..||+|||+|..|..+|..|.+.|+ +++|+|..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4689999999999999999999999 79999853

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.26  E-value=0.053  Score=47.26  Aligned_cols=32  Identities=19%  Similarity=0.459  Sum_probs=29.3

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIG-SITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d   52 (456)
                      ||+|||+|+.|...|..|.++|.+ .+|++|..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            799999999999999999999886 69999854

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.01  E-value=0.051  Score=44.72  Aligned_cols=32  Identities=34%  Similarity=0.443  Sum_probs=27.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +||+|||.|.+|+|+|..|.+ | .++|+++...
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEeccc
Confidence            689999999999999999976 4 3899998543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.94  E-value=0.27  Score=40.58  Aligned_cols=90  Identities=17%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             cEEEEcCChhHHHHHHHHHH-----cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh-CCCCEEEEE
Q 012768           21 SVCLLNCGPTGSETLKNLVL-----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFI   94 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl-----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-np~v~v~~~   94 (456)
                      ||.|||+|++|...+-...+     ..++.+.|+|-+                   ..|++++.+....+ .....+.+.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did-------------------~~k~~~~~d~~~~~~~~~~~~~~t   62 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID-------------------EEKQKIVVDFVKRLVKDRFKVLIS   62 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC-------------------HHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC-------------------cHHHHHHHHHHHhhhccCceEEEe
Confidence            69999999888666543332     336789999832                   23555444433332 223343332


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcCCChH--HHHHHHHHHHHcCC
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQLGEE--KMIKLDRICREANV  137 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~--~~~~l~~~~~~~~i  137 (456)
                      . .       ..+.+++.|+||.+.....  .+.+...+..++++
T Consensus        63 ~-~-------~~~~l~~aDvVVita~~~~~~~~~r~~~i~~~~~i   99 (162)
T d1up7a1          63 D-T-------FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGL   99 (162)
T ss_dssp             S-S-------HHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTC
T ss_pred             c-C-------cccccCCCCEEEEecccCCCCCcchHhhhhhhcCe
Confidence            2 1       1234668999998764322  23344444445554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.93  E-value=0.26  Score=43.89  Aligned_cols=57  Identities=16%  Similarity=0.141  Sum_probs=42.7

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEE
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAK   92 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~   92 (456)
                      ||+++.++|-| .+|+|.++|+.|+..|. ++.+.|.+                   ..+.+.+.+.+.+..+..++.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~~~~~~~~~~~~   58 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVS-------------------SEGLEASKAAVLETAPDAEVL   58 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhCCCCeEE
Confidence            57888899988 67899999999999997 58888722                   235666667777666655443

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.88  E-value=0.067  Score=47.35  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=31.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      -+|+|||+|..|..+|..|.+.|+..++|++...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3799999999999999999999999999998643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.80  E-value=0.25  Score=40.07  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=25.1

Q ss_pred             cEEEEc-CChhHHHHHHHHHHc-C-CCcEEEEe
Q 012768           21 SVCLLN-CGPTGSETLKNLVLG-G-IGSITVID   50 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~-G-v~~itlvD   50 (456)
                      ||.|+| .|.+|+.+|-.|+.. | +..+.|+|
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D   34 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYD   34 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEec
Confidence            799999 499999999988753 5 46799998

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.76  E-value=0.11  Score=46.48  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +||+++.++|-| .+|+|.++|+.|+..|. ++.++|.
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r   37 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDM   37 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            478999999998 68899999999999997 5888873

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=91.60  E-value=0.12  Score=42.73  Aligned_cols=88  Identities=6%  Similarity=-0.010  Sum_probs=49.3

Q ss_pred             CcEEEEcCChhHHH-HHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecCh
Q 012768           20 ASVCLLNCGPTGSE-TLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP   98 (456)
Q Consensus        20 ~~VlIiG~gglG~e-iaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~   98 (456)
                      -||.|||+|..|.. .+..|...+--.+.++|.+.                   .+++.+++    ..+...+  .+ +.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~-------------------~~~~~~~~----~~~~~~~--~~-~~   55 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP-------------------KVLGTLAT----RYRVSAT--CT-DY   55 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH-------------------HHHHHHHH----HTTCCCC--CS-ST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH-------------------HHHHHHHH----hcccccc--cc-cH
Confidence            37999999999976 56666655443455565322                   23333332    2221110  11 11


Q ss_pred             hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           99 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        99 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      +++.+      .+.|+|+.++.+ .....+...|.+.|++++
T Consensus        56 ~~ll~------~~iD~V~I~tp~-~~H~~~~~~al~~gk~V~   90 (167)
T d1xeaa1          56 RDVLQ------YGVDAVMIHAAT-DVHSTLAAFFLHLGIPTF   90 (167)
T ss_dssp             TGGGG------GCCSEEEECSCG-GGHHHHHHHHHHTTCCEE
T ss_pred             HHhcc------cccceecccccc-cccccccccccccccccc
Confidence            22211      257888887755 556667777888888844

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.42  E-value=0.091  Score=43.80  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=30.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|+|+|++|.-.+..+...|...++.+|.+
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            5789999999999999999999999999998743

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.41  E-value=0.079  Score=46.39  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=36.9

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      ++|++.+|+++|+|+.|+-|++.|+..|.++|.++|.+-+
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            4689999999999999999999999999999999997644

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.28  E-value=0.1  Score=40.66  Aligned_cols=55  Identities=9%  Similarity=-0.069  Sum_probs=38.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC--cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHh
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL   85 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~--~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l   85 (456)
                      .+|+|||.|.+|+|+|..|...|.+  .+|+++...    .+-++       ....=++.+.+.+++.
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~----~iL~~-------~d~~~~~~l~~~l~~~   77 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE----MILRG-------FDHTLREELTKQLTAN   77 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS----SSSTT-------SCHHHHHHHHHHHHHT
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc----hhhcc-------cchHHHHHHHHHHHhc
Confidence            6899999999999999998888875  699997422    11121       2233345666777775

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.22  E-value=0.1  Score=40.62  Aligned_cols=33  Identities=12%  Similarity=0.013  Sum_probs=28.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..++|+|+|.|.+|+|+|..|.+.|. ++++++.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~   53 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVR   53 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcch-hheEeec
Confidence            35799999999999999999999985 4888764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=91.14  E-value=0.099  Score=42.54  Aligned_cols=33  Identities=18%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.||| +|-.|..+|+||...|. .++++|.+.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEeccccc
Confidence            6999999 89999999999999999 588888543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.39  Score=39.63  Aligned_cols=39  Identities=13%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             CCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccc
Q 012768          107 PFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL  147 (456)
Q Consensus       107 ~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~  147 (456)
                      ..+..+|+||+-+.+ +......+.|.++++|+|.+ +.|+
T Consensus        67 ~~~~~~DViIDFs~p-~~~~~~~~~a~~~~~~~ViG-TTG~  105 (162)
T d1diha1          67 AVKDDFDVFIDFTRP-EGTLNHLAFCRQHGKGMVIG-TTGF  105 (162)
T ss_dssp             TTTTSCSEEEECSCH-HHHHHHHHHHHHTTCEEEEC-CCCC
T ss_pred             HHhcccceEEEeccH-HHHHHHHHHHHhccceeEEe-cCCC
Confidence            346689999988766 45556678999999997654 5564

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=91.06  E-value=0.077  Score=47.19  Aligned_cols=35  Identities=11%  Similarity=0.151  Sum_probs=31.0

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCccc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE   55 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~   55 (456)
                      .-|+|||+|.+|+.+|..|++.|. +++|+|.+.+.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~   39 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   39 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            459999999999999999999994 79999987653

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.03  E-value=0.36  Score=40.21  Aligned_cols=93  Identities=13%  Similarity=0.198  Sum_probs=54.4

Q ss_pred             cCcEEEEcCChhHHH--HHHHHHHc-C--CCcEEEEeCCcccccCCCccccccccccCcchHHH----HHHHHHHhCCCC
Q 012768           19 KASVCLLNCGPTGSE--TLKNLVLG-G--IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS----VCAFLQELNDAV   89 (456)
Q Consensus        19 ~~~VlIiG~gglG~e--iaknLvl~-G--v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~----~~~~l~~lnp~v   89 (456)
                      +-||.|||+|++|..  ++..|.+. +  .+.++|+|-+                   ..|++.    +.+.....++..
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did-------------------~~~~~~~~~~~~~~~~~~~~~~   62 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDID-------------------EERLDAILTIAKKYVEEVGADL   62 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSC-------------------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCC-------------------chHHHHHHHHHHHHHHhcCCCe
Confidence            458999999999864  44555543 2  3689999833                   224333    334455567777


Q ss_pred             EEEEEecChhhhhcCCcCCCCCCcEEEEcCCCh--HHHHHHHHHHHHcCCe
Q 012768           90 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGE--EKMIKLDRICREANVM  138 (456)
Q Consensus        90 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~--~~~~~l~~~~~~~~ip  138 (456)
                      ++......        .+-++++|+||.+....  +.+..-.....+.+.+
T Consensus        63 ~i~~~td~--------~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~  105 (171)
T d1obba1          63 KFEKTMNL--------DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYY  105 (171)
T ss_dssp             EEEEESCH--------HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCT
T ss_pred             EEEEeCCh--------hhcccCCCeEeeecccccccceeeehhcchhhhhc
Confidence            77664422        12356899999876432  2233334444454443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.069  Score=43.89  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=25.6

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEE
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSIT   47 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~it   47 (456)
                      ..+|+|||.|.+|+++|..+++.|....+
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~~~   57 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGESTSQ   57 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCccce
Confidence            45899999999999999999999986544

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=90.82  E-value=0.045  Score=47.23  Aligned_cols=42  Identities=14%  Similarity=0.183  Sum_probs=34.2

Q ss_pred             cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768            9 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus         9 wG~~~q~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |...-...|.+++|.|+|+|.+|.++|+-|...|+ ++..+|.
T Consensus        33 w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~   74 (197)
T d1j4aa1          33 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI   74 (197)
T ss_dssp             CTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCCcCccccCCeEEEecccccchhHHHhHhhhcc-cccccCc
Confidence            44432345899999999999999999999999998 4677774

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.65  E-value=0.46  Score=37.91  Aligned_cols=36  Identities=8%  Similarity=0.109  Sum_probs=25.9

Q ss_pred             CCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeeccce
Q 012768          111 QFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLT  148 (456)
Q Consensus       111 ~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~  148 (456)
                      ++|+||+-+.+ +......+.|.++++|+|. ++.|+.
T Consensus        44 ~~DvvIDFS~p-~~~~~~~~~~~~~~~~~Vi-GTTG~~   79 (135)
T d1yl7a1          44 NTEVVIDFTHP-DVVMGNLEFLIDNGIHAVV-GTTGFT   79 (135)
T ss_dssp             TCSEEEECCCT-TTHHHHHHHHHHTTCEEEE-CCCCCC
T ss_pred             cCCEEEEcccH-HHHHHHHHHHHhcCCCEEE-eccccc
Confidence            57899987766 4455667789999999654 566643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.55  E-value=0.12  Score=40.81  Aligned_cols=87  Identities=10%  Similarity=0.081  Sum_probs=50.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +||+|+|.|.+|.++++.|...   .++++|.+.-                   ++    +.+.+  +++.+  +..++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~-------------------~~----~~~~~--~~~~~--i~Gd~~   50 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDEN-------------------VR----KKVLR--SGANF--VHGDPT   50 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTT-------------------HH----HHHHH--TTCEE--EESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchH-------------------HH----HHHHh--cCccc--cccccC
Confidence            4899999999999999998544   3677764331                   22    22222  23433  223321


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN  136 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~  136 (456)
                      .-......-+.+++.+|++..+......+...+++.+
T Consensus        51 ~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~   87 (129)
T d2fy8a1          51 RVSDLEKANVRGARAVIVNLESDSETIHCILGIRKID   87 (129)
T ss_dssp             SHHHHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHhhhhcCcEEEEeccchhhhHHHHHHHHHHC
Confidence            1100012235688899888776666666666666654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.47  E-value=0.16  Score=42.04  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=29.5

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d~   53 (456)
                      +.+|+|||.|.+|+|+|..|.+.|.. .+++++...
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            67899999999999999999999986 466666543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.44  E-value=0.13  Score=43.63  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.5

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .|.+++|.|+|.|.+|.++++.|...|+ ++..+|...
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cccCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            4889999999999999999999999999 688888654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.41  E-value=0.11  Score=41.21  Aligned_cols=31  Identities=16%  Similarity=0.171  Sum_probs=28.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+++|+|.|.+|+|+|..+...|. ++|+++.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~   57 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEM   57 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCC-EEEEEEe
Confidence            689999999999999999999997 5899864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.30  E-value=0.13  Score=42.81  Aligned_cols=33  Identities=30%  Similarity=0.381  Sum_probs=28.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~   51 (456)
                      +++|+|||.|.+|+|+|..|.+.|.. .++++.+
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            57899999999999999999999976 4555543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.17  E-value=0.17  Score=44.78  Aligned_cols=36  Identities=14%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +||+++.++|-| .+|+|.++|+.|+..|. ++.+.|.
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~   37 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADL   37 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            479999999998 67899999999999998 5888774

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.96  E-value=0.13  Score=44.24  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|+.++|+|-|.|.+|..+|+.|...| .++++.|.|
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d   59 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTD   59 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecch
Confidence            488899999999999999999999999 568888754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.3  Score=43.09  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .|+.++|+|.| .+|+|.++|+.|+..|. ++.++|
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~   38 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVS   38 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEE
Confidence            37788999998 68899999999999998 588877

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.93  E-value=0.28  Score=43.73  Aligned_cols=34  Identities=12%  Similarity=0.110  Sum_probs=30.3

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |++++|+|.| .+|+|.++|+.|+..|. ++.++|.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r   38 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSR   38 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            6788999998 68899999999999998 6888873

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.79  E-value=0.12  Score=47.55  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++++|+|||+|-.|..+|..|+..|. +++|++..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~   34 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQR   34 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECC
Confidence            47899999999999999999999996 78998843

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.79  E-value=0.14  Score=42.50  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=30.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|+|+||+|.-.+..+...|...++.+|..
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            4569999999999999999999999999999843

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.54  E-value=0.12  Score=40.66  Aligned_cols=31  Identities=19%  Similarity=0.161  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+++|||.|-+|.|+|..|.+.|. ++|++..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            689999999999999999999996 6999863

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.48  E-value=0.2  Score=44.54  Aligned_cols=51  Identities=16%  Similarity=0.101  Sum_probs=38.1

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND   87 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp   87 (456)
                      |+++.++|.| .+|+|.++|+.|+..|. ++.++|.+                   ..+++.+++.+++.+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~g~   59 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT-------------------QKSCDSVVDEIKSFGY   59 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESS-------------------HHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC
Confidence            5677788888 57999999999999997 58888632                   2356666666765544

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.35  Score=44.91  Aligned_cols=31  Identities=16%  Similarity=0.100  Sum_probs=25.0

Q ss_pred             CcEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGP-TGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gg-lG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +.|||.|++| +|+.+++.|...|. .++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            5677889555 99999999999995 6777774

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.29  E-value=0.13  Score=46.25  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=29.1

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++|+|||+|..|..+|..|+..|. +++|+|..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            489999999999999999999997 69999853

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.27  Score=45.12  Aligned_cols=31  Identities=16%  Similarity=0.128  Sum_probs=26.1

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGP-TGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gg-lG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ||||.|+.| +|+.+++.|...|--.+..+|.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~   33 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            699999654 9999999999999657888874

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.14  E-value=0.37  Score=39.73  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ..+|+|.|+||+|.-.+.-+..+|...+..+|.
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~   61 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI   61 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcc
Confidence            456899999999999999999999999998874

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.08  E-value=0.15  Score=47.01  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d   52 (456)
                      ++|+|||+|..|..+|++|.+.|.+ +++|++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5799999999999999999999874 79998865

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.99  E-value=0.32  Score=43.38  Aligned_cols=33  Identities=18%  Similarity=0.206  Sum_probs=27.3

Q ss_pred             hcCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +++||||.|+ |-+|..+++.|...| .++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R   35 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFR   35 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEC
Confidence            4688999995 679999999999999 45777653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.85  E-value=0.19  Score=39.21  Aligned_cols=30  Identities=20%  Similarity=0.254  Sum_probs=27.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .+++|+|.|.+|+|+|..|...|.. +|++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~   52 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAE-VTVLE   52 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-eEEEE
Confidence            7899999999999999999999996 77775

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.32  Score=38.77  Aligned_cols=32  Identities=22%  Similarity=0.138  Sum_probs=26.7

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH----cCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVL----GGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl----~Gv~~itlvD~   51 (456)
                      ..+|+|||.|.+|+|+|-.|.+    .|+ ++|+++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~   72 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFP   72 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecc
Confidence            4579999999999999999974    465 6888875

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.33  E-value=0.16  Score=44.73  Aligned_cols=30  Identities=17%  Similarity=0.332  Sum_probs=28.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|+|||+|..|...|..|+..|. +++|++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~   31 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLES   31 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            79999999999999999999998 5999984

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=88.27  E-value=0.43  Score=39.81  Aligned_cols=91  Identities=21%  Similarity=0.179  Sum_probs=50.5

Q ss_pred             hcCcEEEEcCChhHHH-HHHHHHHc-CCCcEE-EEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEE
Q 012768           18 EKASVCLLNCGPTGSE-TLKNLVLG-GIGSIT-VIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFI   94 (456)
Q Consensus        18 ~~~~VlIiG~gglG~e-iaknLvl~-Gv~~it-lvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~   94 (456)
                      ++-+|.|||+|..|.. .+..+... +.-+++ ++|.+                   ..|++.+++..    +...+  .
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~-------------------~~~~~~~~~~~----~~~~~--~   56 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT-------------------RSHAEEFAKMV----GNPAV--F   56 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS-------------------HHHHHHHHHHH----SSCEE--E
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEecc-------------------Hhhhhhhhccc----cccce--e
Confidence            4568999999999987 47777653 322343 44422                   12444333332    22221  2


Q ss_pred             ecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           95 EEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                       .+.+++.+.     .+.|+|+.++.+ .....+...+.+.+++++
T Consensus        57 -~~~~ell~~-----~~id~v~I~tp~-~~h~~~~~~al~~gk~V~   95 (181)
T d1zh8a1          57 -DSYEELLES-----GLVDAVDLTLPV-ELNLPFIEKALRKGVHVI   95 (181)
T ss_dssp             -SCHHHHHHS-----SCCSEEEECCCG-GGHHHHHHHHHHTTCEEE
T ss_pred             -eeeeccccc-----cccceeeccccc-cccccccccccccchhhh
Confidence             233333221     257888877754 455666677778888743

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.21  E-value=0.22  Score=40.79  Aligned_cols=31  Identities=16%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEE
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVI   49 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlv   49 (456)
                      ..+|+|||.|-+|.+.|..+.+.|.++++++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            4689999999999999999999999999997

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=0.2  Score=42.70  Aligned_cols=33  Identities=15%  Similarity=0.308  Sum_probs=29.8

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|||+|-.|+-+|..++++|. .++++|.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            689999999999999999999997 499999654

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.62  Score=41.21  Aligned_cols=29  Identities=31%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             EEEEcCCh-hHHHHHHHHHHcCCCcEEEEe
Q 012768           22 VCLLNCGP-TGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        22 VlIiG~gg-lG~eiaknLvl~Gv~~itlvD   50 (456)
                      |||.|+.| +|+.+++.|+..|...++.+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            78988655 899999999999998899998

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.94  E-value=0.56  Score=41.84  Aligned_cols=34  Identities=15%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ||+++.++|.| .+|+|.++|+.|+..|. ++.++|
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~   36 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITG   36 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEE
Confidence            58888888888 68899999999999997 688887

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=87.92  E-value=0.2  Score=42.44  Aligned_cols=33  Identities=18%  Similarity=0.176  Sum_probs=29.3

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+|.|||+|-+|+-+|-.++++|.. ++++|.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            4799999999999999999999975 99999643

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.2  Score=44.73  Aligned_cols=33  Identities=18%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +..||+|||+|-.|-..|..|..+|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            46789999999999999999999998 6888874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.78  E-value=0.7  Score=38.21  Aligned_cols=93  Identities=12%  Similarity=0.077  Sum_probs=52.1

Q ss_pred             CcEEEEcCChhHH--HHHHHHHH---cCCCcEEEEeCCcccccCCCccccccccccCcchHHHHH----HHHHHhCCCCE
Q 012768           20 ASVCLLNCGPTGS--ETLKNLVL---GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC----AFLQELNDAVK   90 (456)
Q Consensus        20 ~~VlIiG~gglG~--eiaknLvl---~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~----~~l~~lnp~v~   90 (456)
                      .||.|||+|++|.  .++-.+..   ..++.|.|+|-+.                 ++.|++++-    ....+.+..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e-----------------~~~~~~~~d~~~~~~~~~~~~~~~   64 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPIE   64 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc-----------------cHHHHHHHHHHHHHHHHhcCCCce
Confidence            4799999997763  34333333   2356899988321                 123344333    23445677777


Q ss_pred             EEEEecChhhhhcCCcCCCCCCcEEEEcCCChH--HHHHHHHHHHHcCC
Q 012768           91 AKFIEEYPEALIEMNPPFFSQFTLVVATQLGEE--KMIKLDRICREANV  137 (456)
Q Consensus        91 v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~--~~~~l~~~~~~~~i  137 (456)
                      +...+...        +.++++|+||.+.....  .+.+...+..++|+
T Consensus        65 ~~~~td~~--------~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi  105 (169)
T d1s6ya1          65 IHLTLDRR--------RALDGADFVTTQFRVGGLEARAKDERIPLKYGV  105 (169)
T ss_dssp             EEEESCHH--------HHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTC
T ss_pred             eeecCCch--------hhcCCCCEEEEccccCCCCCeehhhhhhhhcCc
Confidence            66544321        23568899998865422  23344445555555

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.63  E-value=0.82  Score=37.05  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=21.1

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCC
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGI   43 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv   43 (456)
                      .||+|+|+ |.+|+.++-.|+..++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~   28 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSV   28 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHh
Confidence            48999995 9999999999987666

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.63  E-value=0.67  Score=42.28  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +.+.++|||.| +|-+|+.+++.|...|- .++.+|.
T Consensus        13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          13 PAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            34457899988 66799999999999997 4777773

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=0.51  Score=41.52  Aligned_cols=53  Identities=13%  Similarity=0.016  Sum_probs=39.3

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV   89 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v   89 (456)
                      |..+.|+|-| .+|+|.++|+.|+..|.. +.+.|.+                   +.|.+.+++.+.+.++.+
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~-------------------~~~l~~~~~~~~~~~~~~   58 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDIN-------------------KHGLEETAAKCKGLGAKV   58 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcCCcE
Confidence            5667777778 678999999999999984 8887722                   236667777777666543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=1.5  Score=35.53  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=49.7

Q ss_pred             CcEEEEcCChhHHH-HHHHHHHc-CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           20 ASVCLLNCGPTGSE-TLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        20 ~~VlIiG~gglG~e-iaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      -+|.|||+|..|.. .+..|... |+.-+.++|.+                   ..|++..++..   +  +.  .. .+
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~-------------------~~~~~~~~~~~---~--~~--~~-~~   54 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPT-------------------RAKALPICESW---R--IP--YA-DS   54 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSS-------------------CTTHHHHHHHH---T--CC--BC-SS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEech-------------------hHhhhhhhhcc---c--cc--cc-cc
Confidence            47999999999987 46666543 54444455522                   12444444333   2  21  11 12


Q ss_pred             hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           98 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        98 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                      .+.+       ..+.|+|+.++.+ .....+...+.++|++++
T Consensus        55 ~~~l-------~~~~D~V~I~tp~-~~h~~~~~~al~~gk~V~   89 (164)
T d1tlta1          55 LSSL-------AASCDAVFVHSST-ASHFDVVSTLLNAGVHVC   89 (164)
T ss_dssp             HHHH-------HTTCSEEEECSCT-THHHHHHHHHHHTTCEEE
T ss_pred             chhh-------hhhcccccccccc-hhccccccccccccceee
Confidence            2222       2367888877755 455667777888888744

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.42  E-value=0.33  Score=43.56  Aligned_cols=51  Identities=12%  Similarity=0.150  Sum_probs=39.2

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN   86 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ln   86 (456)
                      ||+++.++|-| .+|+|.++|+.|+..|. ++.+.|.+                   ..+.+.+++.+.+.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~~   52 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN-------------------EDRLEETKQQILKAG   52 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcC
Confidence            57888888888 67899999999999998 58887722                   235666667776654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.41  E-value=1.1  Score=36.14  Aligned_cols=75  Identities=11%  Similarity=0.070  Sum_probs=45.2

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCc------EEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCE-EE
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGIGS------ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVK-AK   92 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv~~------itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~-v~   92 (456)
                      ||+|+|+ |.+|+.++-.|+..++-.      +.++|.                 +....+++..+..+........ ..
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~   68 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI-----------------PQAMKALEGVVMELEDCAFPLLAGL   68 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC-----------------GGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc-----------------ccchhhHcCchhhhhcccccccccc
Confidence            8999997 999999999999888642      222221                 1223355555555555544332 22


Q ss_pred             EEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           93 FIEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      .....       ..+.+++.|+||.+.
T Consensus        69 ~~~~~-------~~~~~~~advViita   88 (154)
T d1y7ta1          69 EATDD-------PKVAFKDADYALLVG   88 (154)
T ss_dssp             EEESC-------HHHHTTTCSEEEECC
T ss_pred             ccCCc-------hhhhcccccEEEeec
Confidence            22211       123467899999775

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.28  E-value=0.25  Score=41.64  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=28.5

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC-cEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIG-SITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~-~itlvD~d   52 (456)
                      ||+|||.|.+|.|+|..|.+.|-+ .+++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            799999999999999999998876 69998753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.17  E-value=0.31  Score=41.49  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|+|+|++|.-.+..+...|.+++.++|.+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            4579999999999999999889999999999843

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.06  E-value=0.21  Score=43.04  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=28.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCC-----cEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIG-----SITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~-----~itlvD~d~   53 (456)
                      ||+|||+|-+|..+|..|...|..     +.++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            799999999999999999999985     567776543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.02  E-value=2.7  Score=38.08  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=23.2

Q ss_pred             cCcEEEEcCCh-hHHHHHHHHHHcCCC
Q 012768           19 KASVCLLNCGP-TGSETLKNLVLGGIG   44 (456)
Q Consensus        19 ~~~VlIiG~gg-lG~eiaknLvl~Gv~   44 (456)
                      .++|||.|++| +|+.+++.|...|..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~   37 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYK   37 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCE
Confidence            58999999766 999999999999964

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.94  E-value=0.41  Score=42.51  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=29.3

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |+++.|+|.| .+|+|.++|+.|+..|. ++.++|.
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r   40 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCAR   40 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            6788888888 68899999999999998 5888773

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=86.86  E-value=0.44  Score=44.27  Aligned_cols=32  Identities=13%  Similarity=0.248  Sum_probs=27.7

Q ss_pred             cEEEEcCCh-hHHHHHHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGP-TGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gg-lG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      +|||.|++| +|+++++.|+..|...+..+|..
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            799999655 99999999999999878888854

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.56  E-value=0.59  Score=41.24  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=34.4

Q ss_pred             CcE-EEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC
Q 012768           20 ASV-CLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND   87 (456)
Q Consensus        20 ~~V-lIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp   87 (456)
                      +|| +|-| .+|+|.++|+.|+..|. ++.+.|.+                   ..+++.+++.+++.+.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~g~   50 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN-------------------DATAKAVASEINQAGG   50 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC
Confidence            366 5556 67899999999999998 58888731                   2356666666765543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=86.51  E-value=0.25  Score=42.07  Aligned_cols=36  Identities=11%  Similarity=0.168  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|..++|.|+|+|.+|.++|+-|...|+. +..+|+.
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~   81 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPY   81 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTT
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccCc
Confidence            48889999999999999999999988875 6667753

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=1  Score=40.77  Aligned_cols=75  Identities=13%  Similarity=0.118  Sum_probs=47.2

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++||-|||| .|. ++..++++|.++++-+|..                    +.+..+++...+.+-.-+++.+..
T Consensus        34 ~~~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s--------------------~~~~~a~~~~~~~~~~~~i~~~~~   91 (311)
T d2fyta1          34 FKDKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQS--------------------EILYQAMDIIRLNKLEDTITLIKG   91 (311)
T ss_dssp             TTTCEEEEETCT-TSH-HHHHHHHTTCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCcCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCH--------------------HHHHHHHHHHHHhCCCccceEEEe
Confidence            467889999998 443 5667888999999998842                    123334455555554455666555


Q ss_pred             ChhhhhcCCcCCCCCCcEEEE
Q 012768           97 YPEALIEMNPPFFSQFTLVVA  117 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~  117 (456)
                      ....+.    .....||+|++
T Consensus        92 ~~~~l~----~~~~~~D~Ivs  108 (311)
T d2fyta1          92 KIEEVH----LPVEKVDVIIS  108 (311)
T ss_dssp             CTTTSC----CSCSCEEEEEE
T ss_pred             eHHHhc----CccccceEEEE
Confidence            433321    11247999996

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=86.37  E-value=1.2  Score=40.18  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=25.0

Q ss_pred             cEEEEc-CChhHHHHHHHHHHcCC-----CcEEEEeCC
Q 012768           21 SVCLLN-CGPTGSETLKNLVLGGI-----GSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG-~gglG~eiaknLvl~Gv-----~~itlvD~d   52 (456)
                      ||+|.| .|-+|+++++.|+..|.     .++..+|.-
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~   39 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL   39 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCC
Confidence            799998 56699999999998764     456667643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.32  E-value=0.24  Score=45.11  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ...|+|||+|..|..+|+.|...|+ .++|+|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            4579999999999999999999999 6899885

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=86.18  E-value=0.31  Score=42.38  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      --|+|||+|..|...|..|++.|. +++|+|..
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~   34 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG   34 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            459999999999999999999998 69999854

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=86.18  E-value=0.37  Score=37.09  Aligned_cols=32  Identities=9%  Similarity=-0.057  Sum_probs=26.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCC--CcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGI--GSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv--~~itlvD~   51 (456)
                      .+|+|||.|.+|+|+|..|...+-  .++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            689999999999999998876532  36888874

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.17  E-value=0.31  Score=41.23  Aligned_cols=32  Identities=25%  Similarity=0.200  Sum_probs=28.4

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      --|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            348999999999999999999996 69998854

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.12  E-value=2  Score=39.04  Aligned_cols=30  Identities=30%  Similarity=0.379  Sum_probs=24.5

Q ss_pred             CcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           20 ASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        20 ~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +.|||.| .|=+|+.+++.|...|. +++.+|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d   32 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVAD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEE
Confidence            4577888 55699999999999995 577787

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=86.12  E-value=0.56  Score=41.56  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |+.+.++|-| .+|+|.++|+.|+..|. ++.+.|
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~   39 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCS   39 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            6788888888 57899999999999998 588877

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.04  E-value=1.1  Score=37.19  Aligned_cols=76  Identities=12%  Similarity=0.157  Sum_probs=45.2

Q ss_pred             CcEEEEcC-ChhHHHHHHHHHHcCC-C-----cEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC-CCEE
Q 012768           20 ASVCLLNC-GPTGSETLKNLVLGGI-G-----SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND-AVKA   91 (456)
Q Consensus        20 ~~VlIiG~-gglG~eiaknLvl~Gv-~-----~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp-~v~v   91 (456)
                      .||+|+|+ |.+|..++-.|+..++ |     .+.++|-+.                 .+.+++..+..+...-. ....
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~-----------------~~~~l~g~~mdl~d~a~~~~~~   87 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER-----------------SFQALEGVAMELEDSLYPLLRE   87 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG-----------------GHHHHHHHHHHHHTTTCTTEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc-----------------ccchhcchhhhhcccccccccC
Confidence            47999996 9999999999997665 2     344444111                 12345555555555433 3222


Q ss_pred             EEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012768           92 KFIEEYPEALIEMNPPFFSQFTLVVATQ  119 (456)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~dvVi~~~  119 (456)
                      ......       ..+.+++.|+||.+.
T Consensus        88 ~~~~~~-------~~~~~~~aDvVvi~a  108 (175)
T d7mdha1          88 VSIGID-------PYEVFEDVDWALLIG  108 (175)
T ss_dssp             EEEESC-------HHHHTTTCSEEEECC
T ss_pred             cccccc-------chhhccCCceEEEee
Confidence            222221       123467899999765

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=85.92  E-value=0.31  Score=43.18  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           22 VCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        22 VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      |+|||+|-.|+.+|..|++.|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            9999999999999999999997 699998643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.91  E-value=0.75  Score=40.25  Aligned_cols=33  Identities=15%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |+.++++|.| .+|+|.++|+.|+..|. ++.++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~   36 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVT   36 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEE
Confidence            5678888888 67899999999999997 488876

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.83  E-value=1.1  Score=41.06  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=27.6

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++.||||.| .|=+|+.+++.|...|- .++.+|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            578899998 55699999999999995 5777774

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=85.80  E-value=0.52  Score=41.32  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ||+++.++|.| .+|+|.++|+.|+..|. ++.+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r   37 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDR   37 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            68889999998 57799999999999997 5777763

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.80  E-value=0.41  Score=40.86  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|.+++|.|+|.|.+|.++|+-|.-.|+. +..+|+.
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~   77 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPY   77 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccceeeeeeeccccccccccccccccee-eeccCCc
Confidence            58899999999999999999999999986 6677753

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.76  E-value=0.38  Score=42.63  Aligned_cols=52  Identities=19%  Similarity=0.233  Sum_probs=39.3

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND   87 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp   87 (456)
                      +|+++.++|-| .+|+|.++|+.|+..|.. +.+.|.+                   ..+++.+++.+++.++
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~-------------------~~~~~~~~~~l~~~g~   60 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN-------------------ADAANHVVDEIQQLGG   60 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHHcCC
Confidence            46788888887 688999999999999974 8887632                   2356667777776654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.60  E-value=0.35  Score=41.95  Aligned_cols=34  Identities=32%  Similarity=0.596  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...+|+|||+|..|...|..|.+.|. .++|+|..
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~   81 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTA   81 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeec
Confidence            55889999999999999999999997 59998743

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.54  E-value=0.5  Score=41.78  Aligned_cols=48  Identities=19%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             CcEE-EEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC
Q 012768           20 ASVC-LLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND   87 (456)
Q Consensus        20 ~~Vl-IiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp   87 (456)
                      .||. |-| .+|+|.++|+.|+..|. ++.++|.+                   +.+.+.+++.|++.+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~l~~~g~   51 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARG-------------------EEGLRTTLKELREAGV   51 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC
Confidence            3564 446 78899999999999997 48888732                   2356666677766543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=0.9  Score=41.09  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|+++.++|.| .+|+|.++|+.|+..|. ++.+.|
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~   43 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIAS   43 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            68999999998 68899999999999997 588887

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=85.36  E-value=0.37  Score=41.01  Aligned_cols=32  Identities=13%  Similarity=0.280  Sum_probs=28.4

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      -|+|||+|+.|.+.|..+++.|- +++|+|.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccC
Confidence            48999999999999999999997 599998543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.36  E-value=0.27  Score=40.53  Aligned_cols=34  Identities=12%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             cCcEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..+|+|+|+ |++|.-++.-+...|...++++|.+
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccc
Confidence            357999995 9999999999999999999998843

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.32  E-value=0.3  Score=44.32  Aligned_cols=30  Identities=17%  Similarity=0.183  Sum_probs=27.2

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|+|||+|..|+.+|..|+..|. +++|+|.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk   32 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEK   32 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEEC
Confidence            58999999999999999999995 6999884

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=85.22  E-value=0.79  Score=40.21  Aligned_cols=31  Identities=16%  Similarity=0.289  Sum_probs=27.2

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEE
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVI   49 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlv   49 (456)
                      +..|+|.| .||+|.++|+.|+..|.+++.|+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~   40 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLV   40 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            35688888 78999999999999999988886

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.12  E-value=0.18  Score=43.46  Aligned_cols=34  Identities=9%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCC------cEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIG------SITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~------~itlvD~d~   53 (456)
                      .+|+|||+|+.|-..|..|.+.|..      .+||+|...
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            5899999999999999999999963      689998643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.04  E-value=0.48  Score=42.11  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ||+++.++|.| .+|+|.++|+.|+..|. ++.+.|
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~   36 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITG   36 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            68888888888 68999999999999997 588887

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.92  E-value=0.37  Score=43.42  Aligned_cols=36  Identities=8%  Similarity=0.016  Sum_probs=31.4

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .+|+++.++|.| .+|+|..+|+.|+..|. ++.+.|.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r   57 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASR   57 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEEC
Confidence            368889999998 78999999999999995 6888873

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=84.89  E-value=0.75  Score=37.85  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=20.1

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHH
Q 012768           18 EKASVCLLNCGPTGSETLKNLVL   40 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl   40 (456)
                      ++-||.|+|+|.+|...++.|..
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~   24 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAK   24 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTT
T ss_pred             CcceEEEECChHHHHHHHHHHHh
Confidence            45689999999999999998875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.73  E-value=0.42  Score=39.04  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=26.8

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+|+|+|+|++|.-++.-+-..|. ++..+|
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~   58 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGL-HVAAID   58 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCC-ccceec
Confidence            4679999999999999998889994 677776

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=84.72  E-value=0.32  Score=43.31  Aligned_cols=37  Identities=22%  Similarity=0.198  Sum_probs=33.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      .|+.++|+|-|.|-+|..+++.|...|.+=+++-|.+
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~   69 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD   69 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            4788999999999999999999999999888888854

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.67  E-value=0.21  Score=44.18  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=31.2

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .||+++.|+|.| .+|+|.++|+.|+..|. ++.++|.
T Consensus         2 ~~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r   38 (245)
T d2ag5a1           2 GRLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDI   38 (245)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            468888899987 78999999999999996 6888874

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=84.47  E-value=0.28  Score=44.65  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=35.1

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHc----------CCCcEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLG----------GIGSITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~----------Gv~~itlvD~d~v   54 (456)
                      ++|++.+|++.|+|+.|.-+++.|+.+          |.++|.++|..-+
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            468999999999999999999999866          6689999997654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.38  E-value=0.5  Score=43.02  Aligned_cols=35  Identities=17%  Similarity=0.124  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      +|+++.++|-| .+|+|.++|+.|+..|. ++.+.|.
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~   39 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDL   39 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            46777888888 68899999999999998 5888874

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.22  E-value=0.37  Score=39.62  Aligned_cols=50  Identities=26%  Similarity=0.236  Sum_probs=37.9

Q ss_pred             cEEEE-cCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCE
Q 012768           21 SVCLL-NCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVK   90 (456)
Q Consensus        21 ~VlIi-G~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~   90 (456)
                      ||.|+ |+|++|..+|+.|+..|.. +++++.+                   ..|++.+.+.+...-+...
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~-V~l~~R~-------------------~e~~~~l~~~i~~~~~~~~   52 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE-IVVGSRR-------------------EEKAEAKAAEYRRIAGDAS   52 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE-EEEEESS-------------------HHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcCCCce
Confidence            68999 7999999999999999986 7776632                   2467777777776544333

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.12  E-value=0.64  Score=41.11  Aligned_cols=35  Identities=14%  Similarity=0.199  Sum_probs=29.9

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      |+++.|+|-| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   42 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRS   42 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            6778888888 67899999999999998 58888743

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=84.01  E-value=0.24  Score=45.30  Aligned_cols=40  Identities=10%  Similarity=0.175  Sum_probs=34.1

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHc----------CCCcEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLG----------GIGSITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~----------Gv~~itlvD~d~v   54 (456)
                      ++|.+.+|+|+|+|+.|.-|++.|+.+          +.++|.++|.+-+
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            468899999999999999999999877          3447999997655

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.96  E-value=0.48  Score=40.42  Aligned_cols=35  Identities=17%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .+..|+|||+|+.|.+.|..+++.|. +++|+|.+.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            35679999999999999999999997 689988653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=1.1  Score=39.81  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=39.9

Q ss_pred             cCcEEEE--cCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCE
Q 012768           19 KASVCLL--NCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVK   90 (456)
Q Consensus        19 ~~~VlIi--G~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~   90 (456)
                      .+||.||  |.+|+|-++|+.|+..|-.++.+.+.+                   ..|.+.+++.|++.++.+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~   56 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-------------------VTRGQAAVQQLQAEGLSPR   56 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-------------------HHHHHHHHHHHHHTTCCCE
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC-------------------HHHHHHHHHHHHhcCCcEE
Confidence            4789877  578999999999999866678887632                   3467777888877665544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.83  E-value=0.38  Score=40.38  Aligned_cols=34  Identities=12%  Similarity=0.316  Sum_probs=29.3

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      +.+|+|||.|..|.+.|..|++.|.+ .+++|...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            57899999999999999999999986 66777543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.79  E-value=0.3  Score=40.84  Aligned_cols=34  Identities=18%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             hcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           18 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        18 ~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ++.+|+|||.|..|.+.|..|.+.|.+ ++|+|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            356899999999999999999999984 7888743

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.73  E-value=0.47  Score=41.78  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ||+++.++|-| .+|+|.++|+.|+..|. ++.+.|.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r   38 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDI   38 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            68889999998 58899999999999998 4888773

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=83.69  E-value=0.34  Score=43.70  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=56.9

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecC
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY   97 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~   97 (456)
                      ++||||.| .|-+|+.+++.|...|-..+ ++|..  .           +-|+  ...+.+.+.++...+++-++.....
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi-~~~~~--~-----------~~~~--~~~~~~~~~~~~~~~d~v~~~a~~~   65 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVEL-VLRTR--D-----------ELNL--LDSRAVHDFFASERIDQVYLAAAKV   65 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEE-ECCCT--T-----------TCCT--TCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEE-EecCc--h-----------hccc--cCHHHHHHHHhhcCCCEEEEcchhc
Confidence            56899999 56699999999999885433 33311  0           1112  2234455566666665543321110


Q ss_pred             hhhh-hcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCC-eEEEEeecccee
Q 012768           98 PEAL-IEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANV-MLIFARSYGLTG  149 (456)
Q Consensus        98 ~~~~-~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~i-p~i~~~~~G~~G  149 (456)
                      .... .... .+++         ..+......+-+.|++.++ .||.+++...+|
T Consensus        66 ~~~~~~~~~~~~~~---------~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg  111 (315)
T d1e6ua_          66 GGIVANNTYPADFI---------YQNMMIESNIIHAAHQNDVNKLLFLGSSCIYP  111 (315)
T ss_dssp             CCHHHHHHCHHHHH---------HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSC
T ss_pred             cccccchhhHHHHH---------HHHHHHHHHHHHHHHHcCCCEEEEECCceEcC
Confidence            0000 0000 0000         0122233456678888887 599999988877

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.61  E-value=0.47  Score=41.92  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ||+++.++|-| .+|+|.++|+.|+..|. ++.+.|
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~   37 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICD   37 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            78899999998 58999999999999998 588887

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=83.59  E-value=0.47  Score=42.54  Aligned_cols=34  Identities=21%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|+++.|+|-| .+|+|.++|+.|+..|. ++.++|
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~   36 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLD   36 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            47888999998 68999999999999997 688887

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.45  E-value=0.53  Score=39.92  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=29.5

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      --|+|||.|+.|.+.|..+++.|- +++|+|.+.+
T Consensus         4 yDviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~   37 (221)
T d3grsa1           4 YDYLVIGGGSGGLASARRAAELGA-RAAVVESHKL   37 (221)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCC
Confidence            348999999999999999999996 6999987654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.43  E-value=0.5  Score=40.08  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      --|+|||.|+.|.+.|..+++.|. +++++|.
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~-kV~vie~   34 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEK   34 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            348999999999999999999997 5888874

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.40  E-value=0.43  Score=42.50  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .||+++.|+|.| .+|+|.++|+.|+..|.. +.++|
T Consensus         2 nrL~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~   37 (268)
T d2bgka1           2 NRLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIAD   37 (268)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEE
Confidence            378999999998 688999999999999974 88887

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=83.19  E-value=0.5  Score=41.38  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             cCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           19 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ...|+|||+|+.|...|..|++.|. +++|+|..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~   36 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNG   36 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            4569999999999999999999996 69999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.18  E-value=0.51  Score=41.40  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +|+++.++|-| .+|+|.++|+.|+..|.. +.+.|
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~   36 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGAR-LVACD   36 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEE
Confidence            47888899998 678999999999999984 88877

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=82.98  E-value=0.47  Score=40.02  Aligned_cols=37  Identities=22%  Similarity=0.273  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .|...+|.|+|+|.+|.++++.|...|.. +..+|...
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~   77 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHR   77 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSC
T ss_pred             eccccceeeccccccchhhhhhhhccCce-EEEEeecc
Confidence            46789999999999999999999988885 77777543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=82.85  E-value=0.54  Score=41.58  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=29.7

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |+++.|+|-| .+|+|.++|+.|+..|..-+.+.|
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r   37 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILD   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            6788999998 678999999999999998777755

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.74  E-value=0.49  Score=42.60  Aligned_cols=29  Identities=24%  Similarity=0.425  Sum_probs=27.3

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           22 VCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        22 VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |+|||+|..|...|..|.+.|. +++|+|.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            8999999999999999999998 7999984

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.73  E-value=2  Score=39.12  Aligned_cols=76  Identities=16%  Similarity=0.181  Sum_probs=50.3

Q ss_pred             HhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEec
Q 012768           17 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE   96 (456)
Q Consensus        17 L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~   96 (456)
                      +++++||-+|||. | .++..++++|.++++.+|..                    +.++.+++..++.+-.-+++.+..
T Consensus        37 ~~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s--------------------~~~~~a~~~~~~~~~~~~i~~i~~   94 (328)
T d1g6q1_          37 FKDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMS--------------------SIIEMAKELVELNGFSDKITLLRG   94 (328)
T ss_dssp             HTTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCC--------------------HHHHHHHHHHHHhCccccceEEEe
Confidence            5789999999984 3 34567788999999999842                    234556666676666666666665


Q ss_pred             ChhhhhcCCcCCCCCCcEEEEc
Q 012768           97 YPEALIEMNPPFFSQFTLVVAT  118 (456)
Q Consensus        97 ~~~~~~~~~~~~~~~~dvVi~~  118 (456)
                      ....+..  +  -..+|+|++.
T Consensus        95 ~~~~l~~--~--~~~~D~i~se  112 (328)
T d1g6q1_          95 KLEDVHL--P--FPKVDIIISE  112 (328)
T ss_dssp             CTTTSCC--S--SSCEEEEEEC
T ss_pred             ehhhccC--c--ccceeEEEEE
Confidence            4433210  1  1378999863

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.67  E-value=0.6  Score=39.48  Aligned_cols=33  Identities=15%  Similarity=0.301  Sum_probs=29.2

Q ss_pred             CcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           20 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        20 ~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .-|+|||+|+.|.+.|..+++.|. +++|++.+.
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence            468999999999999999999997 699988654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.66  E-value=0.81  Score=40.54  Aligned_cols=53  Identities=21%  Similarity=0.187  Sum_probs=38.9

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND   87 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp   87 (456)
                      -|+++.++|.| .+|+|.++|+.|+..|. ++.+.|.+.                  ..+++.+++.+++.++
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~------------------~~~~~~~~~~~~~~g~   57 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK------------------EDEANSVLEEIKKVGG   57 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHhcCC
Confidence            37888888887 68999999999999998 577776321                  1356666677766554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.65  E-value=0.6  Score=39.30  Aligned_cols=37  Identities=11%  Similarity=0.041  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .|+.++|.|+|+|.+|.++|+-|...|++ +..+|...
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~   77 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIEN   77 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             cccceEEEEeecccchhhhhhhcccccce-Eeeccccc
Confidence            48899999999999999999998888876 77777543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.44  E-value=0.46  Score=38.49  Aligned_cols=29  Identities=14%  Similarity=0.249  Sum_probs=24.6

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ||.+||+|-+|+.+++.|...| .++++.|
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~-~~i~v~~   30 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTP-HELIISG   30 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSS-CEEEEEC
T ss_pred             EEEEEeccHHHHHHHHHHHhCC-CeEEEEc
Confidence            6999999999999999998876 3566655

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.40  E-value=0.25  Score=44.96  Aligned_cols=40  Identities=13%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCC----------CcEEEEeCCcc
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGI----------GSITVIDGSKV   54 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv----------~~itlvD~d~v   54 (456)
                      ++|++.+|++.|+|+.|.-+++.|+.+++          ++|.++|.+-+
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            46899999999999999999999887765          58999997654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=82.27  E-value=0.67  Score=42.43  Aligned_cols=33  Identities=15%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             cCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCCc
Q 012768           19 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d~   53 (456)
                      ..+|||+|.|+-  .+++.+.+ .++.++++||-|.
T Consensus        78 pk~VLiiG~G~G--~~~~~ll~~~~~~~v~~VEiD~  111 (312)
T d1uira_          78 PKRVLIVGGGEG--ATLREVLKHPTVEKAVMVDIDG  111 (312)
T ss_dssp             CCEEEEEECTTS--HHHHHHTTSTTCCEEEEEESCH
T ss_pred             cceEEEeCCCch--HHHHHHHhcCCcceEEEecCCH
Confidence            468999998742  23444443 5788999998443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.85  E-value=1  Score=39.52  Aligned_cols=32  Identities=16%  Similarity=0.283  Sum_probs=26.4

Q ss_pred             hcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           18 EKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        18 ~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ..+.|+|-| .+|+|.++|+.|+..|. ++.+.|
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~   34 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVD   34 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            345667777 68899999999999997 588877

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.78  E-value=0.43  Score=42.25  Aligned_cols=34  Identities=15%  Similarity=0.242  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ||++++++|.| .+|+|.++|+.|+..|. ++.+.|
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~   36 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGA-RVAIAD   36 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            47888999998 68999999999999997 588887

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.74  E-value=0.62  Score=40.68  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      .|+.+.++|.| .+|+|.++|+.|+..|. ++.++|.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r   37 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDL   37 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36778888888 68899999999999999 5888874

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.49  E-value=1.4  Score=39.96  Aligned_cols=31  Identities=19%  Similarity=0.105  Sum_probs=25.6

Q ss_pred             CcE-EEEcCCh-hHHHHHHHHHHcCCCcEEEEeC
Q 012768           20 ASV-CLLNCGP-TGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        20 ~~V-lIiG~gg-lG~eiaknLvl~Gv~~itlvD~   51 (456)
                      ++| ||.|++| +|+.+++.|...|. +++.+|.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r   33 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVR   33 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            478 8889665 99999999999997 4777775

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.38  E-value=0.73  Score=40.89  Aligned_cols=36  Identities=14%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHH-cCCCcEEEEeCC
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGS   52 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl-~Gv~~itlvD~d   52 (456)
                      +....-|+|||+|..|..+|..|++ +|. +++++|..
T Consensus        30 ~~~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~   66 (278)
T d1rp0a1          30 TYAETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQS   66 (278)
T ss_dssp             HHTEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESS
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEecC
Confidence            4557789999999999999999997 698 58999853

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.12  E-value=0.8  Score=39.01  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=30.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCCcc
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV   54 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d~v   54 (456)
                      -|+|||.|+.|..+|..++++|-+.+.|+|...+
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            4899999999999999999999999999986554

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=81.12  E-value=1  Score=39.60  Aligned_cols=107  Identities=17%  Similarity=0.193  Sum_probs=58.4

Q ss_pred             cEEEEcC-ChhHHHHHHHHHHcCCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCCCCEEEEEecChh
Q 012768           21 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE   99 (456)
Q Consensus        21 ~VlIiG~-gglG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~   99 (456)
                      +|||.|+ |-+|+.+++.|...|  +++.+|...-.       +   ..|+-  ..+.+.+.++..+|++-++.-.....
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~-------~---~~Dl~--~~~~~~~~i~~~~~D~Vih~Aa~~~~   67 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKE-------F---CGDFS--NPKGVAETVRKLRPDVIVNAAAHTAV   67 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSS-------S---CCCTT--CHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCcc-------c---cCcCC--CHHHHHHHHHHcCCCEEEEecccccc
Confidence            6999996 669999999998766  56666533211       0   11221  23445566777777765553211000


Q ss_pred             hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEEEEeecccee
Q 012768          100 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG  149 (456)
Q Consensus       100 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G  149 (456)
                      .....++.      ...  ..+......+.+.|.+.++.++..++...++
T Consensus        68 ~~~~~~~~------~~~--~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~  109 (298)
T d1n2sa_          68 DKAESEPE------LAQ--LLNATSVEAIAKAANETGAWVVHYSTDYVFP  109 (298)
T ss_dssp             HHHTTCHH------HHH--HHHTHHHHHHHHHHTTTTCEEEEEEEGGGSC
T ss_pred             cccccCcc------ccc--cccccccccchhhhhcccccccccccccccc
Confidence            00000100      000  0112334567778888999988887766554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=81.07  E-value=0.44  Score=42.11  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      ||+++.++|-| .+|+|.++|+.|+..|.. +.++|
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~   37 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITG   37 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEE
Confidence            68888888888 788999999999999985 88876

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.03  E-value=0.67  Score=40.82  Aligned_cols=33  Identities=18%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      |+++.++|-| .+|+|.++|+.|+..|. ++.++|
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~   36 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVAS   36 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            6778888998 67899999999999997 588887

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=80.99  E-value=1.2  Score=36.40  Aligned_cols=30  Identities=20%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      -|+|||.|+.|.+.|-.+.+.|.+ ++++|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEE
Confidence            489999999999999999999986 777774

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.87  E-value=0.69  Score=40.19  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=29.6

Q ss_pred             HhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeC
Q 012768           17 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG   51 (456)
Q Consensus        17 L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~   51 (456)
                      |++++|+|-| .+|+|.++|+.|+..|. ++.+.|.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r   36 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICAR   36 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            6788999998 68899999999999997 5888874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.78  E-value=0.44  Score=42.17  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             HHHhcCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEe
Q 012768           15 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        15 ~~L~~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      +||+++.++|.| .+|+|.++|+.|+..|.. +.+.|
T Consensus         2 nrL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~   37 (253)
T d1hxha_           2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSD   37 (253)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEE
Confidence            368888899888 678999999999999985 87876

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.75  E-value=1.5  Score=37.87  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=28.5

Q ss_pred             cCcEEEEc-CChhHHHHHHHHHHcCCCcEEEEeCCc
Q 012768           19 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSK   53 (456)
Q Consensus        19 ~~~VlIiG-~gglG~eiaknLvl~Gv~~itlvD~d~   53 (456)
                      .++|+|.| .+|+|.++++.|+..|. ++.++|...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            57899998 58899999999999998 477787544

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=80.32  E-value=0.62  Score=42.64  Aligned_cols=31  Identities=26%  Similarity=0.497  Sum_probs=27.7

Q ss_pred             cEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           21 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        21 ~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      -|+|||.|.-|+-+|+.|+.+|. ++.+++..
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~-kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGY-KVAMFDIG   36 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCC-eEEEEecC
Confidence            48999999999999999999997 68888753

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=80.31  E-value=2.7  Score=35.84  Aligned_cols=93  Identities=12%  Similarity=0.031  Sum_probs=49.0

Q ss_pred             cCcEEEEcCChhHHH-HHHHHHHc-CCCcEEEEeCCcccccCCCccccccccccCcchHHHHHHHHHHhCC-CCEEEEEe
Q 012768           19 KASVCLLNCGPTGSE-TLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND-AVKAKFIE   95 (456)
Q Consensus        19 ~~~VlIiG~gglG~e-iaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lnp-~v~v~~~~   95 (456)
                      .-+|.|||||..|.. ++..+... |+.=+.++|.+                   ..|++.++   ++.+- ...+...+
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~-------------------~~~a~~~~---~~~~i~~~~~~~~~   90 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN-------------------AEKAKIVA---AEYGVDPRKIYDYS   90 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC-------------------HHHHHHHH---HHTTCCGGGEECSS
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCC-------------------HHHHHHHH---HhhccccccccccC
Confidence            458999999999964 55665443 33222344421                   22444333   33332 12222222


Q ss_pred             cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCCeEE
Q 012768           96 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI  140 (456)
Q Consensus        96 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i  140 (456)
                       +.+++.+     -.+.|+|+.++.+ .....+...|.+++++++
T Consensus        91 -d~~ell~-----~~~iD~V~I~tp~-~~H~~~~~~al~~gk~v~  128 (221)
T d1h6da1          91 -NFDKIAK-----DPKIDAVYIILPN-SLHAEFAIRAFKAGKHVM  128 (221)
T ss_dssp             -SGGGGGG-----CTTCCEEEECSCG-GGHHHHHHHHHHTTCEEE
T ss_pred             -chhhhcc-----cccceeeeeccch-hhhhhHHHHhhhcchhhh
Confidence             2222221     1257899877765 344566667778888754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=80.23  E-value=0.76  Score=40.09  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEe
Q 012768           16 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID   50 (456)
Q Consensus        16 ~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD   50 (456)
                      .|+.++|+|-|.|.+|..+|+.|...|.+ ++.+|
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d   69 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTD   69 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeec
Confidence            37889999999999999999999999965 55555

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=80.14  E-value=0.65  Score=39.26  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=31.1

Q ss_pred             HHHhcCcEEEEcCChhHHHHHHHHHHcCCCcEEEEeCC
Q 012768           15 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS   52 (456)
Q Consensus        15 ~~L~~~~VlIiG~gglG~eiaknLvl~Gv~~itlvD~d   52 (456)
                      ..++.++|.|+|+|.+|.++++-|.-.|.. +..+|..
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~   79 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTH   79 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSS
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccc-ccccccc
Confidence            457789999999999999999999988886 5566643