Citrus Sinensis ID: 012772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Secondary Structure (PSIPRED)
cccccccccEEEEcccEEEEEcccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccEEEccccccccccccccEEEEEEccEEEEEEEccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEcccEEEEEcccHccccHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHcccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccEEcccHccEEEEEEccccEEEcccccccEEEEEcccEEEEEEEEEcccccEEEEEEEccccccHHHccccHHHHHHHHHHHccEEccccHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mfsfhvsgeviisqepyvcvpnnsssisrcdgcfassnlkkcsacQVVWycgsncqkldwkLHRLECQVLSrldkekrksvtPSIRLMLKLYLRRKlqndnvipstttdnYSLVEALVARILFELIIWFNQFGLVLCFSynkslmpafvnnlfgkdmsdiDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTicnselrplgtglypVISIinhsclpnavlVFEGRLAVVRAVQhvpkgaegqfddiQESAIlegyrckddgcsgfllrdsddkgftcqqcglvrsKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLtipvyqrvypqfhpllglqyytcgklewflGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Flexible Loop (DISEMBL)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQvlsrldkekrksvtpsiRLMLKLYLRrklqndnvipstttdnysLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHvpkgaegqfddIQESAILEGYRCKDDGCSGFLlrdsddkgftCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAqaeasyklsskde
Low Complexity Region (SEG)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIrlmlklylrrklQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Disordered region (IsUnstruct)
****HVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL****************
Disordered Region (DISOPRED)
*FSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA****K******
Disordered Region (DISEMBL)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA*************
Disordered Region (DISPRO)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQN***IPS***DNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q7XJS0	480	Histone-lysine N-methyltr	yes	no	0.892	0.847	0.569	1e-158
Q8R5A0	433	N-lysine methyltransferas	yes	no	0.846	0.891	0.258	8e-31
Q7M6Z3	433	N-lysine methyltransferas	yes	no	0.846	0.891	0.258	2e-30
E1C5V0	436	N-lysine methyltransferas	no	no	0.864	0.903	0.238	9e-30
Q0P585	433	N-lysine methyltransferas	yes	no	0.844	0.889	0.243	1e-27
Q7ZXV5	430	N-lysine methyltransferas	N/A	no	0.835	0.886	0.246	3e-27
Q5BJI7	435	N-lysine methyltransferas	yes	no	0.835	0.875	0.240	6e-27
Q9NRG4	433	N-lysine methyltransferas	yes	no	0.839	0.884	0.245	6e-27
C3RZA1	433	N-lysine methyltransferas	yes	no	0.839	0.884	0.242	6e-27
Q9CWR2	428	Histone-lysine N-methyltr	no	no	0.804	0.857	0.247	2e-26

>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2

 Score =  559 bits (1440), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/478 (56%), Positives = 347/478 (72%), Gaps = 71/478 (14%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELII 127
           + L+RL+KEKRK VTP+IRLM++LY++R LQN+ V+P TTTDNYSLVEALV+        
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSH------- 146

Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISIN 187
                                        MS+IDEKQ+LLYAQ+ANLVNLILQ+P + + 
Sbjct: 147 -----------------------------MSEIDEKQMLLYAQMANLVNLILQFPSVDLR 177

Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           EIAENFSK +CNAH+IC+SELRP G GL+P++SIINHSC PNAVLVFE ++AVVRA+ ++
Sbjct: 178 EIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNI 237

Query: 248 PKGAE-----------------------------------GQFDDIQESAILEGYRCKDD 272
            K +E                                   G+  DI+ESAILEGYRC ++
Sbjct: 238 SKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCARCSNFGKPHDIEESAILEGYRCANE 297

Query: 273 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 332
            C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++  +S+K     S  + Q  +  YK
Sbjct: 298 KCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVSEKAPTSPSAEDKQAAIELYK 357

Query: 333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392
            IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+EAL YC+L +PVYQRVYP  HPL+G
Sbjct: 358 TIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWREALNYCRLIVPVYQRVYPATHPLIG 417

Query: 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 450
           LQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG ++PFMKEL  KLEEA+AEASYK
Sbjct: 418 LQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGISTPFMKELSAKLEEARAEASYK 475

Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q8R5A0|SMYD2_MOUSE N-lysine methyltransferase SMYD2 OS=Mus musculus GN=Smyd2 PE=1 SV=1

 Score =  135 bits (339), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 209/457 (45%), Gaps = 71/457 (15%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARIL 122
           H+LEC  +  L +    S T  +RL  ++  ++K+  +   PS         E L+A   
Sbjct: 86  HKLECSSMVVLGENWNPSET--VRLTARILAKQKIHPERT-PS---------EKLLAVRE 133

Query: 123 FELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLI---L 179
           FE  +                            D  D +EK+ L+ + IA L       L
Sbjct: 134 FESHL----------------------------DKLD-NEKKDLIQSDIAALHQFYSKYL 164

Query: 180 QWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLA 239
           ++P+ S   +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA
Sbjct: 165 EFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLA 222

Query: 240 VVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---R 296
            VRAVQ +  G     D++  S I   Y  +D       LRDS      C++C      +
Sbjct: 223 EVRAVQEIHPG-----DEVFTSYIDLLYPTED---RNDRLRDSYFFTCECRECTTKDKDK 274

Query: 297 SKEEIKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF-- 345
           +K E++K++S     + + +               +++      ++ E  Q+K+   F  
Sbjct: 275 AKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFED 334

Query: 346 -SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF 404
            +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   
Sbjct: 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394

Query: 405 LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
           L +     K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 395 LENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7M6Z3|SMYD2_RAT N-lysine methyltransferase SMYD2 OS=Rattus norvegicus GN=Smyd2 PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 208/457 (45%), Gaps = 71/457 (15%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARIL 122
           H+LEC  +    +    S T  +RL  ++  ++K+  +   PS         E L+A   
Sbjct: 86  HKLECSSMVVFGENWNPSET--VRLTARILAKQKMHPERT-PS---------EKLLAVRE 133

Query: 123 FELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLI---L 179
           FE  +                            D  D +EK+ L+ + IA L       L
Sbjct: 134 FESHL----------------------------DKLD-NEKKDLIQSDIAALHQFYSKHL 164

Query: 180 QWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLA 239
           ++P+ S   +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA
Sbjct: 165 EFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLA 222

Query: 240 VVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---R 296
            VRAVQ +  G     D++  S I   Y  +D       LRDS      C++C      +
Sbjct: 223 EVRAVQEIHPG-----DEVFTSYIDLLYPTED---RNDRLRDSYFFTCECRECTTKDKDK 274

Query: 297 SKEEIKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF-- 345
           +K EI+K+++     + + +               +++      ++ E  Q+K+   F  
Sbjct: 275 AKVEIRKLSNPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFED 334

Query: 346 -SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF 404
            +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   
Sbjct: 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394

Query: 405 LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
           L +     K++ +A+ I+ I HG + P++ E+  ++E
Sbjct: 395 LENKAAGEKALKKAIAIMEIAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|E1C5V0|SMYD2_CHICK N-lysine methyltransferase SMYD2 OS=Gallus gallus GN=SMYD2 PE=3 SV=1

 Score =  131 bits (330), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 194/444 (43%), Gaps = 50/444 (11%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++ S   Y  V   S   S CDGCFA    L KC  C+  +YC   CQK DW +H+LE
Sbjct: 33  GELLFSCPAYTAVLTVSERGSHCDGCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 92

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C  +    +    S T  +RL  ++  ++K+      P  T       E L+A   FE  
Sbjct: 93  CAAMCAFGQNWNPSET--VRLTARILAKQKIH-----PERTQS-----EKLLAVKEFESH 140

Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISI 186
           +                            D  D +EK+ L+   IA L +   +  E   
Sbjct: 141 L----------------------------DKLD-NEKRELIQNDIAALHHFYSKHMEYPD 171

Query: 187 NE-IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 245
           N  +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAV+
Sbjct: 172 NAALVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVK 231

Query: 246 HVPKGAE--GQFDDIQESAILEGYRCKDD-----GCSGFLLRDSDDKGFTCQQCGLVRSK 298
            +  G E    + D+         R +D       C    +++ D +    ++     S 
Sbjct: 232 EIEPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCDCRECTMKEKDKEKLKIRKLNDPPSA 291

Query: 299 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIK 358
           E ++ +      + ++           E++   ++       ++   +V ++    + + 
Sbjct: 292 EAVRDMIKYARNVIEEFRRAKHYKPPSELLEICELSLDKMGAVFEDSNVYMLHMMYQAMG 351

Query: 359 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA 418
           + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L +     K++ +A
Sbjct: 352 VCLYVQDWEGALRYGQKIIRPYSKHYPSYSLNVASMWLKLGRLYMALENRPAGDKALKKA 411

Query: 419 VEILRITHGTNSPFMKELILKLEE 442
           + I+ + HG + P++ E+  +LE+
Sbjct: 412 IAIMEVAHGKDHPYISEIKKELED 435

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q0P585|SMYD2_BOVIN N-lysine methyltransferase SMYD2 OS=Bos taurus GN=SMYD2 PE=2 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 202/451 (44%), Gaps = 66/451 (14%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   S   + C+ CFA    L KC  C+  +YC   CQ+ DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVSERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQREDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C  +    +    S T  +RL  ++  ++K+  +   PS         E L+A   FE  
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPERT-PS---------EKLLAVKEFESH 137

Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISI 186
           +                            D  D +EK+ L+ + IA L +   +  E   
Sbjct: 138 L----------------------------DKLD-NEKRDLIQSDIAALHHFYSKHLEFPD 168

Query: 187 NE-IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 245
           N+ +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct: 169 NDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228

Query: 246 HVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEEIK 302
            +  G E     +  S I   Y  +D       LRDS      CQ+C      ++K EI+
Sbjct: 229 EIHPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKVEIR 280

Query: 303 KIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKL---YHPFSVNLM 350
           K+       + + +               +++      ++ E  Q+K+   +   +V ++
Sbjct: 281 KLNDPPKAETIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSCVFEDSNVYML 340

Query: 351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTEN 410
               + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L +   
Sbjct: 341 HMMYQAMGVCLYMQDWEGALRYGQKIIQPYSKHYPLYSLNVASMWLKLGRLYMGLENKAA 400

Query: 411 AIKSMTEAVEILRITHGTNSPFMKELILKLE 441
             +++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 401 GERALKKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7ZXV5|SMY2A_XENLA N-lysine methyltransferase SMYD2-A OS=Xenopus laevis GN=smyd2-a PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/455 (24%), Positives = 203/455 (44%), Gaps = 74/455 (16%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++ +   Y  V  ++   + CD CFA    L KC  C+  +YC  +CQK DW +H+LE
Sbjct: 28  GELLFTCPAYTYVLTDTERGNHCDFCFARKEGLSKCGKCKQAFYCNVDCQKGDWPMHKLE 87

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C  +    +    S T  +RL  ++  ++K Q +   PS T  +    E+ ++++  E  
Sbjct: 88  CSAMCSYGQNWCPSET--VRLTARILAKQKTQTERT-PSETFLSVKEFESHLSKLDNE-- 142

Query: 127 IWFNQFGLVLCFSYNKSLMP---AFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPE 183
                          K L+    A ++  + K+         L Y   A LV L      
Sbjct: 143 --------------KKELIESDIAALHRFYSKN---------LHYTDNAALVFL------ 173

Query: 184 ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 243
                    F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ F+G +A +RA
Sbjct: 174 ---------FAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNIIVTFKGTVAEIRA 224

Query: 244 VQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFT--CQQCGLVR---SK 298
           VQ +  G     D++  S I   Y  +D        R  D   FT  C++C   +   +K
Sbjct: 225 VQEIHAG-----DEVFTSYIDLLYPTEDRN-----DRLMDSYFFTCDCRECSTKQKDPAK 274

Query: 299 EEIKKIASEVNILSKKTL---------ALTSCGNHQEVVSTYKMIEKLQKKLYHPF---S 346
            EI+K++   +  + K +               +++      +M E    K+   F   +
Sbjct: 275 LEIRKLSDPPSHQTVKDMIKYARNIVEEFRRAKHYKTPSELLEMCELSLDKMGSVFVDSN 334

Query: 347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG 406
           V ++    + + + + L++W  AL Y +  I  Y + YP +   +   +   G+L   L 
Sbjct: 335 VYMLHMMYQAMGVCLYLQEWDGALKYGEKIIKPYSKHYPAYSLNVASMWLKLGRLYMGLE 394

Query: 407 DTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
            T    K++ +A+ I++I HG +  ++ E+  +LE
Sbjct: 395 KTTIGTKALKKALAIMQIAHGPDHHYIAEIKKELE 429

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q5BJI7|SMY2A_DANRE N-lysine methyltransferase SMYD2-A OS=Danio rerio GN=smyd2a PE=2 SV=1

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/458 (24%), Positives = 200/458 (43%), Gaps = 77/458 (16%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ +   Y  V   +    RC+ CF     L KC  C+  +YC   CQ+ DW +H+LE
Sbjct: 30  GDLVFACPAYAYVLTVNERGGRCECCFTRKEGLSKCGKCKQAYYCNVECQRGDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C  +    +    S T  +RL+ ++ L++K Q +   PS        +EA + ++  E  
Sbjct: 90  CSAMCAYGENWCPSET--VRLVARIILKQKHQTERT-PSERVLTLRELEAHLDKLDNE-- 144

Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISI 186
                                        +M+D D       A + +  +  L +P+ + 
Sbjct: 145 ---------------------------KNEMNDTD------IAALHHFYSRHLDFPDNAA 171

Query: 187 NEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQH 246
             + E  +++ CN  TI + EL  LG+ L+P ++++NHSC PN ++ ++G +A VRAVQ 
Sbjct: 172 --LTELIAQVNCNGFTIEDEELSHLGSALFPDVALMNHSCSPNVIVTYKGTVAEVRAVQE 229

Query: 247 VPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIAS 306
           +        ++I  S I   Y  +D       L+DS      C++C   +SK+E K    
Sbjct: 230 I-----NPEEEIFNSYIDLLYPTED---RIERLKDSYFFNCDCKEC-TSKSKDEAK---- 276

Query: 307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ----TREKLIKILME 362
            + I  K ++        Q V+    +IE+ ++  ++     L++    + EK+  I  E
Sbjct: 277 -MEIRQKLSIPPEEEEIKQMVIYARNVIEEFRRAKHYKTPSELLEICELSMEKMGAIFAE 335

Query: 363 ------------------LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF 404
                             ++DW  A+ Y +  I  Y   YP +   +   Y   G+L   
Sbjct: 336 TNVYMLHMMYQAMGVCLYMQDWDGAMKYGEKIIHPYSVHYPPYSLNVASMYLKLGRLYLG 395

Query: 405 LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 442
           L      +K++ +A+ I+ I HG + P++ E+  ++EE
Sbjct: 396 LEKRTQGVKALKKALAIMDIAHGKDHPYIDEIKKEMEE 433

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9NRG4|SMYD2_HUMAN N-lysine methyltransferase SMYD2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 202/453 (44%), Gaps = 70/453 (15%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C  +    +    S T  +RL  ++  ++K+  +   PS         E L+A   FE  
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPERT-PS---------EKLLAVKEFESH 137

Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLI---LQWPE 183
           +                            D  D +EK+ L+ + IA L +     L +P+
Sbjct: 138 L----------------------------DKLD-NEKKDLIQSDIAALHHFYSKHLGFPD 168

Query: 184 ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 243
              + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRA
Sbjct: 169 N--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRA 226

Query: 244 VQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEE 300
           VQ +  G E     +  S I   Y  +D       LRDS      CQ+C      ++K E
Sbjct: 227 VQEIKPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKVE 278

Query: 301 IKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF---SVN 348
           I+K++      + + +               +++      ++ E  Q+K+   F   +V 
Sbjct: 279 IRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVY 338

Query: 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT 408
           ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L   
Sbjct: 339 MLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHK 398

Query: 409 ENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
               K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 399 AAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|C3RZA1|SMYD2_PIG N-lysine methyltransferase SMYD2 OS=Sus scrofa GN=SMYD2 PE=2 SV=1

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 204/453 (45%), Gaps = 70/453 (15%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CFA    L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C  +    +    S T  +RL  ++  ++K+  +   PS         E L+A   FE  
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPERT-PS---------EKLLAVKEFESH 137

Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLI---LQWPE 183
           +                            D  D +EK+ L+ + IA L +     L++P+
Sbjct: 138 L----------------------------DKLD-NEKRDLIQSDIAALHHFYSKHLEFPD 168

Query: 184 ISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRA 243
              + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRA
Sbjct: 169 S--DSLVVLFAQVNCNGFTIEDEELSHLGSXIFPDVALMNHSCCPNVIVTYKGTLAEVRA 226

Query: 244 VQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEE 300
           VQ +  G E     +  S I   Y  +D       LRDS      CQ+C      ++K E
Sbjct: 227 VQEIHPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKVE 278

Query: 301 IKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKL---YHPFSVN 348
           I+K+       + + +               +++      ++ E  Q+K+   +   +V 
Sbjct: 279 IRKLNDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSCVFEDSNVY 338

Query: 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT 408
           ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L + 
Sbjct: 339 MLHMMYQAMGVCLYMQDWEGALRYGQKIIQPYSKHYPLYSLNVASMWLKLGRLYMGLENK 398

Query: 409 ENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
               +++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 399 AAGERALRKAIAIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9CWR2|SMYD3_MOUSE Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 186/432 (43%), Gaps = 65/432 (15%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C++  YC + CQK  W  HR E
Sbjct: 27  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRIAKYCSAKCQKKAWPDHRRE 86

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSL--VEALVARILFE 124
           C  L      K +    S+RL+ ++ +  KL ++   PS +   YS   +E+ ++++  +
Sbjct: 87  CSCLKSC---KPRYPPDSVRLLGRVIV--KLMDEK--PSESEKLYSFYDLESNISKLTED 139

Query: 125 LIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEI 184
                 Q  +                             Q  +  +I +   L   +   
Sbjct: 140 KKEGLRQLAMTF---------------------------QHFMREEIQDASQLPPSF--- 169

Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
              ++ E F+K+ CN+ TICN+E++ +G GLYP +S++NHSC PN  +VF G   ++RAV
Sbjct: 170 ---DLFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAV 226

Query: 245 QHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIK-- 302
           + +  G E     +      E  R +        LRD       C +C  +R + + K  
Sbjct: 227 REIEAGEELTICYLDMLMTSEERRKQ--------LRDQ-----YCFECDCIRCQTQDKDA 273

Query: 303 -------KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK 355
                  +I  EV    KK   L +    ++V++  + I           ++  ++  + 
Sbjct: 274 DMLTGDEQIWKEVQESLKKIEELKAHWKWEQVLALCQAIINSNSNRLPDINIYQLKVLDC 333

Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
            +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++
Sbjct: 334 AMDACINLGMLEEALFYAMRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 393

Query: 416 TEAVEILRITHG 427
             A +I+++THG
Sbjct: 394 RLAFDIMKVTHG 405

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
388518229	477	unknown [Medicago truncatula]	0.964	0.922	0.689	0.0
302141868	480	unnamed protein product [Vitis vinifera]	0.903	0.858	0.654	0.0
255545512	482	protein with unknown function [Ricinus c	0.903	0.854	0.650	0.0
225459467	477	PREDICTED: histone-lysine N-methyltransf	0.896	0.857	0.652	0.0
357461631	511	Histone-lysine N-methyltransferase ASHR1	0.962	0.859	0.637	1e-178
449445136	482	PREDICTED: histone-lysine N-methyltransf	0.905	0.856	0.615	1e-168
356507670	484	PREDICTED: histone-lysine N-methyltransf	0.901	0.849	0.614	1e-161
297836508	483	hypothetical protein ARALYDRAFT_319740 [	0.896	0.846	0.572	1e-158
30680137	480	histone-lysine N-methyltransferase ASHR1	0.892	0.847	0.569	1e-156
41469441	480	putative MYND finger protein [Oryza sati	0.905	0.860	0.529	1e-144

>gi|388518229|gb|AFK47176.1| unknown [Medicago truncatula]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/448 (68%), Positives = 372/448 (83%), Gaps = 8/448 (1%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLH 63
           FH  G+VIISQEPYVCVP       RCDGCF+++NL KCS CQVVWYCG+ CQK +WKLH
Sbjct: 31  FH-PGDVIISQEPYVCVPTQK----RCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLH 85

Query: 64  RLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILF 123
           RLECQ LSRLD  KRKSVTPSIRLMLKLYLRRKLQ+  +IPST  DNY LVEALVARILF
Sbjct: 86  RLECQALSRLDSNKRKSVTPSIRLMLKLYLRRKLQDQKIIPSTAMDNYKLVEALVARILF 145

Query: 124 ELIIWFNQFGLVLCFSY--NKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQW 181
            +I+  +   +++ FS   N S++    N  F +DMSDI E+QL+LYAQ+ANLV+LILQW
Sbjct: 146 -IIVVLSSRAMIVEFSLLTNMSVVIVLFNTYFHEDMSDIKEEQLVLYAQMANLVHLILQW 204

Query: 182 PEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVV 241
           PEI+I EIA  FSK ACNAHT+C+SELRPLGTGLYPV+SIINHSCLPN+VLVF+GR A+V
Sbjct: 205 PEINIKEIANFFSKFACNAHTVCDSELRPLGTGLYPVVSIINHSCLPNSVLVFDGREALV 264

Query: 242 RAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEI 301
           RA+QH+PKG EGQ++D++E+AILEGYRCK++ C GFLLR +D K F CQ+CGLVR KEEI
Sbjct: 265 RALQHIPKGTEGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEI 324

Query: 302 KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM 361
           K+IA+E+  L ++    +S GN  E +S +KMIEKLQ KLYHPFS+NLMQTRE ++K LM
Sbjct: 325 KQIATEIKFLLEEASKPSSNGNSHEAISIHKMIEKLQTKLYHPFSINLMQTRETILKSLM 384

Query: 362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 421
           +LE W+EALAYC+LTIP+YQRVYP  HPLLGLQYYTCGKLEW+LGDTE AIKS+T+AV+I
Sbjct: 385 KLEYWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDI 444

Query: 422 LRITHGTNSPFMKELILKLEEAQAEASY 449
           LRITHGT +PF+KEL + L EA+AEAS+
Sbjct: 445 LRITHGTKTPFVKELSMMLVEARAEASF 472

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141868|emb|CBI19071.3| unnamed protein product [Vitis vinifera]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/484 (65%), Positives = 371/484 (76%), Gaps = 72/484 (14%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYV VPNNS+  SRC+GCF SSNLKKCSAC VVWYCGS CQK DWKLHRLEC
Sbjct: 34  GEVIISQEPYVSVPNNSAVHSRCEGCFRSSNLKKCSACHVVWYCGSTCQKSDWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELII 127
             LSRL+KE++KS+TPSIRLM+KLY+RRKLQ++ ++P+T  DNY+LVEALV+ I      
Sbjct: 94  NALSRLEKERQKSLTPSIRLMVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHI------ 147

Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISIN 187
                                         +DIDEKQL+LYAQ+ANLVNLILQWP+I++ 
Sbjct: 148 ------------------------------TDIDEKQLVLYAQMANLVNLILQWPDINVK 177

Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           EIAENFSKLACNAHTIC+ ELRPLGTGLYPVISIINHSCLPN+VLVFE RLAVVRAVQH+
Sbjct: 178 EIAENFSKLACNAHTICDGELRPLGTGLYPVISIINHSCLPNSVLVFEERLAVVRAVQHI 237

Query: 248 PKGAE-----------------------------------GQFDDIQESAILEGYRCKDD 272
           PKG E                                   GQ+DDIQESAILEGYRCKDD
Sbjct: 238 PKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPRCRRMGQYDDIQESAILEGYRCKDD 297

Query: 273 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 332
            C GFLLRDSDD GF CQQCGLVR+KEEIK++ASE+  LS K   ++S  ++ E  S YK
Sbjct: 298 RCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASELKPLSDKA-TMSSSSHYVEATSIYK 356

Query: 333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392
           MIEKLQ KL+HPFS+NLM+TRE ++KILME++DW+ AL YC+LTIPVYQRVYP FHPLLG
Sbjct: 357 MIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRAALTYCKLTIPVYQRVYPGFHPLLG 416

Query: 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 452
           LQYYTCGKLEW LG+TE+A+KS+T+A +IL+ITHGTN+PFMKEL+ KLEEA+AEAS+K S
Sbjct: 417 LQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGTNTPFMKELLFKLEEARAEASHKRS 476

Query: 453 SKDE 456
           SKD+
Sbjct: 477 SKDK 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545512|ref|XP_002513816.1| protein with unknown function [Ricinus communis] gi|223546902|gb|EEF48399.1| protein with unknown function [Ricinus communis]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/483 (65%), Positives = 369/483 (76%), Gaps = 71/483 (14%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYVCVPNNS++ SRCD CF+SSN+KKCSACQV WYCGS+CQKL+WKLHR+EC
Sbjct: 34  GEVIISQEPYVCVPNNSATESRCDRCFSSSNVKKCSACQVAWYCGSSCQKLEWKLHRIEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELII 127
           + LS+LDK++RK VTPSIRLM++L +RRKLQ++ +I ST TDNY LVEALVA        
Sbjct: 94  EALSKLDKDRRKYVTPSIRLMVRLLIRRKLQSEKIISSTATDNYDLVEALVAH------- 146

Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISIN 187
                                        M DIDEKQL+LYAQ+ANLVNLIL+WP+++I 
Sbjct: 147 -----------------------------MKDIDEKQLVLYAQMANLVNLILRWPDVNIK 177

Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           EIAENFSKLACNAHTIC+SELRPLGTGLYPV+SIINHSCLPNAVLVF+GRLAVV  VQH+
Sbjct: 178 EIAENFSKLACNAHTICDSELRPLGTGLYPVVSIINHSCLPNAVLVFDGRLAVVHTVQHI 237

Query: 248 PKGAE-----------------------------------GQFDDIQESAILEGYRCKDD 272
           PKG+E                                   G  DDIQESAILEGYRCKD+
Sbjct: 238 PKGSEVLISYIETAGSTMTRQKALKQQYFFTCTCPRCIKMGLLDDIQESAILEGYRCKDN 297

Query: 273 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 332
            C+GFLLRDSDD+GF CQQCGL+RSKEE+KK A+E+   S K     S GN QE VS YK
Sbjct: 298 RCNGFLLRDSDDRGFICQQCGLLRSKEEVKKSAAEIKATSDKASKSISSGNLQEAVSIYK 357

Query: 333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392
           +IEKLQ+KL HPFS +LMQTREKL+K+LMELEDW EAL+YC+LTIPVYQRVYP+FHPLLG
Sbjct: 358 LIEKLQRKLCHPFSTSLMQTREKLLKMLMELEDWGEALSYCKLTIPVYQRVYPEFHPLLG 417

Query: 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 452
           LQY++CGKLEW LGDTE AIKS+T+A+++LRITHGT +PFMKEL++KLEEA+AE SY  +
Sbjct: 418 LQYFSCGKLEWLLGDTEAAIKSLTKALDVLRITHGTKTPFMKELMMKLEEARAEVSYLRA 477

Query: 453 SKD 455
           S D
Sbjct: 478 SND 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459467|ref|XP_002284386.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Vitis vinifera]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/484 (65%), Positives = 368/484 (76%), Gaps = 75/484 (15%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYV VPNNS+  SRC+GCF SSNLKKCSAC VVWYCGS CQK DWKLHRLEC
Sbjct: 34  GEVIISQEPYVSVPNNSAVHSRCEGCFRSSNLKKCSACHVVWYCGSTCQKSDWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELII 127
             LSRL+KE++KS+TPSIRLM+KLY+RRKLQ++ ++P+T  DNY+LVEALV+ I      
Sbjct: 94  NALSRLEKERQKSLTPSIRLMVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHI------ 147

Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISIN 187
                                         +DIDEKQL+LYAQ+ANLVNLILQWP+I++ 
Sbjct: 148 ------------------------------TDIDEKQLVLYAQMANLVNLILQWPDINVK 177

Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           EIAENFSKLACNAHTIC+ ELRPLGTGLYPVISIINHSCLPN+VLVFE RLAVVRAVQH+
Sbjct: 178 EIAENFSKLACNAHTICDGELRPLGTGLYPVISIINHSCLPNSVLVFEERLAVVRAVQHI 237

Query: 248 PKGAE-----------------------------------GQFDDIQESAILEGYRCKDD 272
           PKG E                                   GQ+DDIQESAILEGYRCKDD
Sbjct: 238 PKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPRCRRMGQYDDIQESAILEGYRCKDD 297

Query: 273 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 332
            C GFLLRDSDD GF CQQCGLVR+KEEIK++ASE+  LS K    +S     +  S YK
Sbjct: 298 RCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASELKPLSDKATMSSS----SQATSIYK 353

Query: 333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392
           MIEKLQ KL+HPFS+NLM+TRE ++KILME++DW+ AL YC+LTIPVYQRVYP FHPLLG
Sbjct: 354 MIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRAALTYCKLTIPVYQRVYPGFHPLLG 413

Query: 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 452
           LQYYTCGKLEW LG+TE+A+KS+T+A +IL+ITHGTN+PFMKEL+ KLEEA+AEAS+K S
Sbjct: 414 LQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGTNTPFMKELLFKLEEARAEASHKRS 473

Query: 453 SKDE 456
           SKD+
Sbjct: 474 SKDK 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461631|ref|XP_003601097.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula] gi|355490145|gb|AES71348.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/483 (63%), Positives = 371/483 (76%), Gaps = 44/483 (9%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLH 63
           FH  G+VIISQEPYVCVP       RCDGCF+++NL KCS CQVVWYCG+ CQK +WKLH
Sbjct: 31  FH-PGDVIISQEPYVCVPTQK----RCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLH 85

Query: 64  RLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILF 123
           RLECQ LSRLD  KRKSVTPSIRLMLKLYLRRKLQ+  +IPST  DNY LVEALVARILF
Sbjct: 86  RLECQALSRLDSNKRKSVTPSIRLMLKLYLRRKLQDQKIIPSTAMDNYKLVEALVARILF 145

Query: 124 ELIIWFNQFGLVLCFSY--NKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQW 181
            +I+  +   +++ FS   N S++    N  F +DMSDI E+QL+LYAQ+ANLV+LILQW
Sbjct: 146 -IIVVLSSRAMIVEFSLLTNMSVVIVLFNTYFHEDMSDIKEEQLVLYAQMANLVHLILQW 204

Query: 182 PEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVV 241
           PEI+I EIA  FSK ACNAHT+C+SELRPLGTGLYPV+SIINHSCLPN+VLVF+GR A V
Sbjct: 205 PEINIKEIANFFSKFACNAHTVCDSELRPLGTGLYPVVSIINHSCLPNSVLVFDGREASV 264

Query: 242 RAVQHVPKGAE-----------------------------------GQFDDIQESAILEG 266
           RA+QH+PKG E                                   GQ++D++E+AILEG
Sbjct: 265 RALQHIPKGTEVLISYIETAGSTVTRQKALREQYLFQCVCPLCSKVGQYEDVRENAILEG 324

Query: 267 YRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQE 326
           YRCK++ C GFLLR +D K F CQ+CGLVR KEEIK+IA+E+  L ++    +S  +H E
Sbjct: 325 YRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLLEEASKPSSNDSH-E 383

Query: 327 VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ 386
            +S +KMIEKLQ KLYHPFS+NLMQTRE ++K LM+LE W+EALAYC+LTIP+YQRVYP 
Sbjct: 384 AISIHKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEYWREALAYCKLTIPIYQRVYPA 443

Query: 387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 446
            HPLLGLQYYTCGKLEW+LGDTE AIKS+T+AV+ILRITHGT +PF+KEL + L EA+AE
Sbjct: 444 VHPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDILRITHGTKTPFVKELSMMLVEARAE 503

Query: 447 ASY 449
           AS+
Sbjct: 504 ASF 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445136|ref|XP_004140329.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus] gi|449502473|ref|XP_004161650.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/484 (61%), Positives = 348/484 (71%), Gaps = 71/484 (14%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GE IISQEPYVCVPNNS   SRCD CFAS NLKKCSAC+V WYC S CQK +WKLHRLEC
Sbjct: 34  GEEIISQEPYVCVPNNSPVESRCDRCFASINLKKCSACKVAWYCSSVCQKSEWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELII 127
             L+RLDK++ KSVTPSIRLM+KL++RRKLQ++ VIP   TDNY LVE L+         
Sbjct: 94  DALARLDKDRHKSVTPSIRLMIKLFIRRKLQSEKVIPMAATDNYKLVEELI--------- 144

Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISIN 187
                                        MS IDEKQL+LYAQ+  LVN ILQWP +++ 
Sbjct: 145 ---------------------------DHMSGIDEKQLVLYAQMGTLVNFILQWPGMNVK 177

Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           EIA NFSKLACNAHTIC+SELRPLGTGLYPVISIINHSCLPNAVLVFEGR AVVRAVQH+
Sbjct: 178 EIAVNFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRTAVVRAVQHI 237

Query: 248 PKGAE-----------------------------------GQFDDIQESAILEGYRCKDD 272
           P GAE                                    Q D+I+ESAILEGYRC++D
Sbjct: 238 PAGAEVSISYIETAGSTMTRQKTLKENYLFTCTCSRCVKVAQEDEIKESAILEGYRCRND 297

Query: 273 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 332
            C GFLLR+SDD GFTCQQCGLVRSKE+IK IAS++  +S +     S  ++ E +  Y+
Sbjct: 298 QCDGFLLRNSDDTGFTCQQCGLVRSKEDIKNIASKIKSISDEASTSLSSQSYAEALFMYE 357

Query: 333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392
            +EKLQ+ L HP+S++LMQTREKL+KI MELE+W +AL YC+LTI VYQ++YP  HPLLG
Sbjct: 358 KVEKLQRILCHPYSISLMQTREKLLKISMELENWTKALTYCKLTISVYQKLYPGIHPLLG 417

Query: 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 452
           LQ+YTCGKLEW LG TE+AIKS T+A +ILRITHGTNS FMKEL+LKLEEA+AEASYKLS
Sbjct: 418 LQFYTCGKLEWLLGHTEDAIKSYTKAFDILRITHGTNSSFMKELLLKLEEARAEASYKLS 477

Query: 453 SKDE 456
           S D+
Sbjct: 478 STDD 481

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507670|ref|XP_003522587.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Glycine max]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/488 (61%), Positives = 352/488 (72%), Gaps = 77/488 (15%)

Query: 8   GEVIISQEPYVCVPNNSS--SISRCDGCFASSN---LKKCSACQVVWYCGSNCQKLDWKL 62
           GEVIISQEPYVCVPNNSS     RCDGCF + N   L +CS CQ+ +YCG+ CQ+ +WKL
Sbjct: 34  GEVIISQEPYVCVPNNSSVSPQKRCDGCFTTINNNVLSRCSRCQLAFYCGTACQRSEWKL 93

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARIL 122
           HRLEC+VLS L K KRKS+TPSIRLML+LYLRRKLQND +IPST  DNY+LVEALVA   
Sbjct: 94  HRLECEVLSSLHKYKRKSLTPSIRLMLRLYLRRKLQNDKIIPSTAMDNYNLVEALVAH-- 151

Query: 123 FELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWP 182
                                             MSDI E+QL+LYAQ+ANLVN IL+WP
Sbjct: 152 ----------------------------------MSDITEEQLVLYAQMANLVNSILEWP 177

Query: 183 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 242
            I+I EIAENFSK ACNAHTIC+SELRP+GTGLYPVISIINHSCLPN+VLVFEG  A+VR
Sbjct: 178 GINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGSSALVR 237

Query: 243 AVQHVPKGAE-----------------------------------GQFDDIQESAILEGY 267
           AVQH+P G E                                   GQ+DDIQESAILEGY
Sbjct: 238 AVQHIPSGTEVLISYIETAESTMTRQKALKEQYLFTCTCPRCSKVGQYDDIQESAILEGY 297

Query: 268 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEV 327
           +CK + C GFLLR +D KGF CQ CGL+R KEEIK+I +E+ +LS+   +  S   +QE 
Sbjct: 298 KCKSEKCGGFLLRTTDGKGFQCQGCGLIRDKEEIKRITTEIKLLSEDA-SKPSATYYQEA 356

Query: 328 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 387
           +S YK IEKLQ +L+HP S+NLM TREK++K LMELE W EALAYC+LTIP YQRVYP  
Sbjct: 357 ISIYKRIEKLQTELFHPLSINLMHTREKILKSLMELEHWTEALAYCKLTIPFYQRVYPAV 416

Query: 388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 447
           HPL GLQYYTCGKLEW+LGDTE A+KS+T+AV+ILRITHGTN+PFMK+L++KLEEA+ EA
Sbjct: 417 HPLPGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARTEA 476

Query: 448 SYKLSSKD 455
           SYK SSK+
Sbjct: 477 SYKFSSKE 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836508|ref|XP_002886136.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata] gi|297331976|gb|EFH62395.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/480 (57%), Positives = 348/480 (72%), Gaps = 71/480 (14%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+S  SRCDGCF ++NLKKCS CQVVWYCGS CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSLESRCDGCFKTNNLKKCSGCQVVWYCGSFCQKSEWKLHRHEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELII 127
           + L+RL+KEKRK VTP+IRLM+KLY++R LQN+ V+P T+TDNYSLVEALV+        
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVKLYIKRNLQNEKVLPITSTDNYSLVEALVSH------- 146

Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISIN 187
                                        MS+IDEKQ+LLYAQ+ANLVNLILQ+P + + 
Sbjct: 147 -----------------------------MSEIDEKQMLLYAQMANLVNLILQFPSVDLR 177

Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           EIAENFSK +CNAH+IC+SELRP G GL+P++SIINHSC PNAVLVFE ++AVVRA+ ++
Sbjct: 178 EIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNI 237

Query: 248 PKGAE-----------------------------------GQFDDIQESAILEGYRCKDD 272
            K +E                                   G+  DI+ESAILEGYRC ++
Sbjct: 238 SKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCARCSNVGKPHDIEESAILEGYRCSNE 297

Query: 273 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 332
            C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++  +S+K  A  S  N Q  +  YK
Sbjct: 298 KCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVSEKAHASPSAENKQAAIELYK 357

Query: 333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392
            IEKLQ KLYH FS+ LM+TREKL+K+LM+LE W+EAL YC+L +PVYQRVYP  HPL+G
Sbjct: 358 TIEKLQVKLYHSFSITLMRTREKLLKMLMDLEIWREALNYCRLIVPVYQRVYPATHPLIG 417

Query: 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS 452
           LQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HGT++PFMKEL  KLEEA+AEASYKL+
Sbjct: 418 LQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGTSTPFMKELSAKLEEARAEASYKLA 477

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680137|ref|NP_849969.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana] gi|94707144|sp|Q7XJS0.2|ASHR1_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR1; AltName: Full=ASH1-related protein 1; AltName: Full=Protein SET DOMAIN GROUP 37 gi|145651792|gb|ABP88121.1| At2g17900 [Arabidopsis thaliana] gi|330251606|gb|AEC06700.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/478 (56%), Positives = 347/478 (72%), Gaps = 71/478 (14%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELII 127
           + L+RL+KEKRK VTP+IRLM++LY++R LQN+ V+P TTTDNYSLVEALV+        
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSH------- 146

Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISIN 187
                                        MS+IDEKQ+LLYAQ+ANLVNLILQ+P + + 
Sbjct: 147 -----------------------------MSEIDEKQMLLYAQMANLVNLILQFPSVDLR 177

Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           EIAENFSK +CNAH+IC+SELRP G GL+P++SIINHSC PNAVLVFE ++AVVRA+ ++
Sbjct: 178 EIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNI 237

Query: 248 PKGAE-----------------------------------GQFDDIQESAILEGYRCKDD 272
            K +E                                   G+  DI+ESAILEGYRC ++
Sbjct: 238 SKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCARCSNFGKPHDIEESAILEGYRCANE 297

Query: 273 GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYK 332
            C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++  +S+K     S  + Q  +  YK
Sbjct: 298 KCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVSEKAPTSPSAEDKQAAIELYK 357

Query: 333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG 392
            IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+EAL YC+L +PVYQRVYP  HPL+G
Sbjct: 358 TIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWREALNYCRLIVPVYQRVYPATHPLIG 417

Query: 393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK 450
           LQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG ++PFMKEL  KLEEA+AEASYK
Sbjct: 418 LQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGISTPFMKELSAKLEEARAEASYK 475

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41469441|gb|AAS07242.1| putative MYND finger protein [Oryza sativa Japonica Group] gi|108710650|gb|ABF98445.1| MYND finger family protein, expressed [Oryza sativa Japonica Group]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 325/478 (67%), Gaps = 65/478 (13%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEV+ISQEPY   PN  S  S CD CFAS NL+KCS C+V WYCGS CQ+ +WKLH+LEC
Sbjct: 38  GEVVISQEPYASTPNKISVGSNCDNCFASRNLRKCSVCRVAWYCGSACQREEWKLHQLEC 97

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELII 127
           + ++ L ++++K +TP+IRLM++L LRRKLQ+D  IPS+ TDNY+LV+AL + I      
Sbjct: 98  RAIAALTEDRKKMLTPTIRLMVRLVLRRKLQDDKAIPSSGTDNYNLVDALESHI------ 151

Query: 128 WFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISIN 187
                                         S++D+ QL+LYAQ+ANLV LIL   E+ + 
Sbjct: 152 ------------------------------SEVDKNQLVLYAQMANLVQLILPSFELDLK 181

Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           EI   FSK ACNAHTIC+ ELRPLGTGLYPV+SIINHSC+PNAVL+FEGR A VRA+Q +
Sbjct: 182 EITHTFSKFACNAHTICDPELRPLGTGLYPVLSIINHSCVPNAVLIFEGRTAYVRALQPI 241

Query: 248 PKGAEGQFD-----------------------------DIQESAILEGYRCKDDGCSGFL 278
            K  E                                 D +E A+LEGYRC D  C GFL
Sbjct: 242 SKNEEVSISYIETAATTMKRQDDLKHYYFTCTCPRCVKDSEEDALLEGYRCNDQKCDGFL 301

Query: 279 LRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQ 338
           L ++ +KG+TCQ+C   R  EE++K+AS+V +LS K  +L S GN+ EV S YK IE+L+
Sbjct: 302 LPNAGNKGYTCQKCSTSRDGEELQKMASDVLLLSDKVSSLVSSGNNSEVGSMYKTIEELE 361

Query: 339 KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC 398
           +KLYHP S+ L+ TRE L+KI MEL+DW+ AL YC+LTIPVY+R+YP FHP++GLQ+YTC
Sbjct: 362 RKLYHPLSITLLHTRETLLKIYMELQDWQTALMYCRLTIPVYERIYPPFHPMIGLQFYTC 421

Query: 399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE 456
           GKLEW L  TE+A+ S+T A +ILRITHGT S FMKEL+ KLEE +AEAS++LS+ DE
Sbjct: 422 GKLEWLLEYTEDALMSLTRAADILRITHGTKSEFMKELLGKLEEVRAEASFRLSAGDE 479

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2827831	480	SDG37 "SET domain group 37" [A	0.434	0.412	0.611	8.1e-108
UNIPROTKB|Q9H7B4	428	SMYD3 "Histone-lysine N-methyl	0.537	0.572	0.318	5.2e-32
RGD|1562635	428	Smyd3 "SET and MYND domain con	0.537	0.572	0.307	1.1e-31
MGI|MGI:1916976	428	Smyd3 "SET and MYND domain con	0.548	0.584	0.290	4.9e-31
MGI|MGI:1915889	433	Smyd2 "SET and MYND domain con	0.611	0.644	0.259	1.5e-30
RGD|727785	433	Smyd2 "SET and MYND domain con	0.611	0.644	0.262	4.5e-30
UNIPROTKB|E1C5V0	436	SMYD2 "N-lysine methyltransfer	0.633	0.662	0.223	1.2e-29
UNIPROTKB|Q0P585	433	SMYD2 "N-lysine methyltransfer	0.616	0.648	0.254	6.5e-28
UNIPROTKB|F1S2Y3	431	SMYD2 "N-lysine methyltransfer	0.611	0.647	0.253	1.9e-27
UNIPROTKB|C3RZA1	433	SMYD2 "N-lysine methyltransfer	0.611	0.644	0.253	2e-27

TAIR|locus:2827831 SDG37 "SET domain group 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
 Identities = 121/198 (61%), Positives = 159/198 (80%)

Query:   253 GQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILS 312
             G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++  +S
Sbjct:   278 GKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDLKTVS 337

Query:   313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAY 372
             +K     S  + Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+EAL Y
Sbjct:   338 EKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWREALNY 397

Query:   373 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF 432
             C+L +PVYQRVYP  HPL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG ++PF
Sbjct:   398 CRLIVPVYQRVYPATHPLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGISTPF 457

Query:   433 MKELILKLEEAQAEASYK 450
             MKEL  KLEEA+AEASYK
Sbjct:   458 MKELSAKLEEARAEASYK 475

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9H7B4 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 5.2e-32, Sum P(2) = 5.2e-32
 Identities = 85/267 (31%), Positives = 134/267 (50%)

Query:   188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
             ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct:   170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 229

Query:   248 PKGAE---GQFDDIQESAI----LEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEE 300
               G E      D +  S      L    C +  C     +D D    T  +      +E 
Sbjct:   230 EVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQES 289

Query:   301 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIK 358
             +KKI  E+    K    L  C   Q ++S+    E+L      P  +N+ Q +  +  + 
Sbjct:   290 LKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERL------P-DINIYQLKVLDCAMD 336

Query:   359 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA 418
               + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++  A
Sbjct:   337 ACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 396

Query:   419 VEILRITHGTNSPFMKELILKLEEAQA 445
              +I+R+THG     +++LIL LEE  A
Sbjct:   397 FDIMRVTHGREHSLIEDLILLLEECDA 423

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISS

RGD|1562635 Smyd3 "SET and MYND domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 283 (104.7 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 82/267 (30%), Positives = 134/267 (50%)

Query:   188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
             ++ E F+K+ CN+ TICN+E++ +G GLYP +S++NHSC PN  +VF G   ++RAV+ +
Sbjct:   170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREI 229

Query:   248 PKGAE---GQFDDIQESAI----LEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEE 300
               G E      D +  S      L    C +  C     +D D    T  +      +E 
Sbjct:   230 EAGEELTICYLDMLMTSEERRKQLRDQYCFECDCIRCQTQDKDADMLTGDEQIWKEVQES 289

Query:   301 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIK 358
             +KKI  E+    K    L  C   Q ++++    E+L      P  +N+ Q +  +  + 
Sbjct:   290 LKKI-EELKAHWKWEQVLALC---QAIINSNS--ERL------P-DINIYQLKVLDCAMD 336

Query:   359 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA 418
               + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++  A
Sbjct:   337 ACINLGMLEEALFYAMRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 396

Query:   419 VEILRITHGTNSPFMKELILKLEEAQA 445
              +I+++THG     +++LIL LEE  A
Sbjct:   397 FDIMKVTHGREHSLIEDLILLLEECDA 423

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISO

MGI|MGI:1916976 Smyd3 "SET and MYND domain containing 3" [Mus musculus (taxid:10090)]

 Score = 280 (103.6 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
 Identities = 76/262 (29%), Positives = 134/262 (51%)

Query:   188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
             ++ E F+K+ CN+ TICN+E++ +G GLYP +S++NHSC PN  +VF G   ++RAV+ +
Sbjct:   170 DLFEAFAKVICNSFTICNAEMQEVGVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREI 229

Query:   248 PKGAEGQ--FDDIQESAILEGYRCKDDGCSGF-LLR-DSDDKGFTCQQCGLVRSKEEIKK 303
               G E    + D+  ++     + +D  C     +R  + DK        ++   E+I K
Sbjct:   230 EAGEELTICYLDMLMTSEERRKQLRDQYCFECDCIRCQTQDK-----DADMLTGDEQIWK 284

Query:   304 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 363
                EV    KK   L +    ++V++  + I           ++  ++  +  +   + L
Sbjct:   285 ---EVQESLKKIEELKAHWKWEQVLALCQAIINSNSNRLPDINIYQLKVLDCAMDACINL 341

Query:   364 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 423
                +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++  A +I++
Sbjct:   342 GMLEEALFYAMRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMK 401

Query:   424 ITHGTNSPFMKELILKLEEAQA 445
             +THG     +++LIL LEE  A
Sbjct:   402 VTHGREHSLIEDLILLLEECDA 423

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1915889 Smyd2 "SET and MYND domain containing 2" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
 Identities = 80/308 (25%), Positives = 153/308 (49%)

Query:   153 FGKDMSDID-EKQLLLYAQIANL---VNLILQWPEISINEIAENFSKLACNAHTICNSEL 208
             F   +  +D EK+ L+ + IA L    +  L++P+ S   +   F+++ CN  TI + EL
Sbjct:   134 FESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEEL 191

Query:   209 RPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYR 268
               LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G     D++  S I   Y 
Sbjct:   192 SHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPG-----DEVFTSYIDLLYP 246

Query:   269 CKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLALTSCGNHQ 325
              +D       LRDS      C++C      ++K E++K++S     + + +   +    +
Sbjct:   247 TEDRNDR---LRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIE 303

Query:   326 EV--VSTYKMIEKL-------QKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYC 373
             E      YK   +L       Q+K+   F   +V ++    + + + + ++DW+ AL Y 
Sbjct:   304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYG 363

Query:   374 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433
             Q  I  Y + YP +   +   +   G+L   L +     K++ +A+ I+ + HG + P++
Sbjct:   364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423

Query:   434 KELILKLE 441
              E+  ++E
Sbjct:   424 SEIKQEIE 431

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000993 "RNA polymerase II core binding" evidence=IDA

GO:0002039 "p53 binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016571 "histone methylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISO

GO:0018027 "peptidyl-lysine dimethylation" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=IDA

RGD|727785 Smyd2 "SET and MYND domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 247 (92.0 bits), Expect = 4.5e-30, Sum P(2) = 4.5e-30
 Identities = 81/308 (26%), Positives = 152/308 (49%)

Query:   153 FGKDMSDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSEL 208
             F   +  +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL
Sbjct:   134 FESHLDKLDNEKKDLIQSDIAALHQFYSKHLEFPDHS--SLVVLFAQVNCNGFTIEDEEL 191

Query:   209 RPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYR 268
               LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G     D++  S I   Y 
Sbjct:   192 SHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPG-----DEVFTSYIDLLYP 246

Query:   269 CKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEEIKKIASEVNILSKKTLALTSCGNHQ 325
              +D       LRDS      C++C      ++K EI+K+++     + + +   +    +
Sbjct:   247 TEDRNDR---LRDSYFFTCECRECTTKDKDKAKVEIRKLSNPPQAEAIRDMVRYARNVIE 303

Query:   326 EV--VSTYKMIEKL-------QKKLYHPF---SVNLMQTREKLIKILMELEDWKEALAYC 373
             E      YK   +L       Q+K+   F   +V ++    + + + + ++DW+ AL Y 
Sbjct:   304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYG 363

Query:   374 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433
             Q  I  Y + YP +   +   +   G+L   L +     K++ +A+ I+ I HG + P++
Sbjct:   364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEIAHGKDHPYI 423

Query:   434 KELILKLE 441
              E+  ++E
Sbjct:   424 SEIKQEIE 431

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISO;ISS

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO;ISS

GO:0016571 "histone methylation" evidence=ISO

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISO;ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISO;ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISO;ISS

UNIPROTKB|E1C5V0 SMYD2 "N-lysine methyltransferase SMYD2" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 67/300 (22%), Positives = 143/300 (47%)

Query:   153 FGKDMSDID-EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRP 210
             F   +  +D EK+ L+   IA L +   +  E   N  +   F+++ CN  TI + EL  
Sbjct:   137 FESHLDKLDNEKRELIQNDIAALHHFYSKHMEYPDNAALVVLFAQVNCNGFTIEDEELSH 196

Query:   211 LGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAE--GQFDDIQESAILEGYR 268
             LG+ ++P ++++NHSC PN ++ ++G LA VRAV+ +  G E    + D+         R
Sbjct:   197 LGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVKEIEPGEEVFTSYIDLLYPTEDRNDR 256

Query:   269 CKDD-----GCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGN 323
              +D       C    +++ D +    ++     S E ++ +      + ++         
Sbjct:   257 LRDSYFFTCDCRECTMKEKDKEKLKIRKLNDPPSAEAVRDMIKYARNVIEEFRRAKHYKP 316

Query:   324 HQEVVSTYKM-IEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR 382
               E++   ++ ++K+   ++   +V ++    + + + + ++DW+ AL Y Q  I  Y +
Sbjct:   317 PSELLEICELSLDKMGA-VFEDSNVYMLHMMYQAMGVCLYVQDWEGALRYGQKIIRPYSK 375

Query:   383 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE 442
              YP +   +   +   G+L   L +     K++ +A+ I+ + HG + P++ E+  +LE+
Sbjct:   376 HYPSYSLNVASMWLKLGRLYMALENRPAGDKALKKAIAIMEVAHGKDHPYISEIKKELED 435

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

UNIPROTKB|Q0P585 SMYD2 "N-lysine methyltransferase SMYD2" [Bos taurus (taxid:9913)]

 Score = 244 (91.0 bits), Expect = 6.5e-28, Sum P(2) = 6.5e-28
 Identities = 78/306 (25%), Positives = 150/306 (49%)

Query:   153 FGKDMSDID-EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRP 210
             F   +  +D EK+ L+ + IA L +   +  E   N+ +   F+++ CN  TI + EL  
Sbjct:   134 FESHLDKLDNEKRDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSH 193

Query:   211 LGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCK 270
             LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y  +
Sbjct:   194 LGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEE-----VFTSYIDLLYPTE 248

Query:   271 DDGCSGFLLRDSDDKGFTCQQCGLV---RSKEEIKKI-----ASEVNIL---SKKTLALT 319
             D       LRDS      CQ+C      ++K EI+K+     A  +  +   ++  +   
Sbjct:   249 DRNDR---LRDSYFFTCECQECTTKDKDKAKVEIRKLNDPPKAETIRDMVRYARNVIEEF 305

Query:   320 SCGNHQEVVSTY-KMIEKLQKKL---YHPFSVNLMQTREKLIKILMELEDWKEALAYCQL 375
                 H +  S   ++ E  Q+K+   +   +V ++    + + + + ++DW+ AL Y Q 
Sbjct:   306 RRAKHYKSPSELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYGQK 365

Query:   376 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE 435
              I  Y + YP +   +   +   G+L   L +     +++ +A+ I+ + HG + P++ E
Sbjct:   366 IIQPYSKHYPLYSLNVASMWLKLGRLYMGLENKAAGERALKKAIAIMEVAHGKDHPYISE 425

Query:   436 LILKLE 441
             +  ++E
Sbjct:   426 IKQEIE 431

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0002039 "p53 binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1S2Y3 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)]

 Score = 241 (89.9 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
 Identities = 78/308 (25%), Positives = 152/308 (49%)

Query:   153 FGKDMSDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSEL 208
             F   +  +D EK+ L+ + IA L +     L++P+   + +   F+++ CN  TI + EL
Sbjct:   132 FESHLDKLDNEKRDLIQSDIAALHHFYSKHLEFPDS--DSLVVLFAQVNCNGFTIEDEEL 189

Query:   209 RPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYR 268
               LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y 
Sbjct:   190 SHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEE-----VFTSYIDLLYP 244

Query:   269 CKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEEIKKI-----ASEVNIL---SKKTLA 317
              +D       LRDS      CQ+C      ++K EI+K+     A  +  +   ++  + 
Sbjct:   245 TEDRNDR---LRDSYFFTCECQECTTKDKDKAKVEIRKLNDPPKAEAIRDMVRYARNVIE 301

Query:   318 LTSCGNHQEVVSTY-KMIEKLQKKL---YHPFSVNLMQTREKLIKILMELEDWKEALAYC 373
                   H +  S   ++ E  Q+K+   +   +V ++    + + + + ++DW+ AL Y 
Sbjct:   302 EFRRAKHYKSPSELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYG 361

Query:   374 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433
             Q  I  Y + YP +   +   +   G+L   L +     +++ +A+ I+ + HG + P++
Sbjct:   362 QKIIQPYSKHYPLYSLNVASMWLKLGRLYMGLENKAAGERALRKAIAIMEVAHGKDHPYI 421

Query:   434 KELILKLE 441
              E+  ++E
Sbjct:   422 SEIKQEIE 429

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=IEA

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0018027 "peptidyl-lysine dimethylation" evidence=IEA

GO:0018026 "peptidyl-lysine monomethylation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000993 "RNA polymerase II core binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|C3RZA1 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)]

 Score = 240 (89.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
 Identities = 78/308 (25%), Positives = 152/308 (49%)

Query:   153 FGKDMSDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSEL 208
             F   +  +D EK+ L+ + IA L +     L++P+   + +   F+++ CN  TI + EL
Sbjct:   134 FESHLDKLDNEKRDLIQSDIAALHHFYSKHLEFPDS--DSLVVLFAQVNCNGFTIEDEEL 191

Query:   209 RPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQFDDIQESAILEGYR 268
               LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ +  G E     +  S I   Y 
Sbjct:   192 SHLGSXIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEE-----VFTSYIDLLYP 246

Query:   269 CKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEEIKKI-----ASEVNIL---SKKTLA 317
              +D       LRDS      CQ+C      ++K EI+K+     A  +  +   ++  + 
Sbjct:   247 TEDRNDR---LRDSYFFTCECQECTTKDKDKAKVEIRKLNDPPKAEAIRDMVRYARNVIE 303

Query:   318 LTSCGNHQEVVSTY-KMIEKLQKKL---YHPFSVNLMQTREKLIKILMELEDWKEALAYC 373
                   H +  S   ++ E  Q+K+   +   +V ++    + + + + ++DW+ AL Y 
Sbjct:   304 EFRRAKHYKSPSELLEICELSQEKMSCVFEDSNVYMLHMMYQAMGVCLYMQDWEGALRYG 363

Query:   374 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM 433
             Q  I  Y + YP +   +   +   G+L   L +     +++ +A+ I+ + HG + P++
Sbjct:   364 QKIIQPYSKHYPLYSLNVASMWLKLGRLYMGLENKAAGERALRKAIAIMEVAHGKDHPYI 423

Query:   434 KELILKLE 441
              E+  ++E
Sbjct:   424 SEIKQEIE 431

GO:0010452 "histone H3-K36 methylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XJS0	ASHR1_ARATH	2, ., 1, ., 1, ., 4, 3	0.5690	0.8925	0.8479	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
pfam01753	39	pfam01753, zf-MYND, MYND finger	5e-11
pfam00856	113	pfam00856, SET, SET domain	7e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-05
smart00317	124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	6e-05

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 57.0 bits (138), Expect = 5e-11
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 30 CDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          C  C   +  L +CS C+ V+YC   CQK DW  H+ EC
Sbjct: 1  CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39

>gnl|CDD|216155 pfam00856, SET, SET domain

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 201 HTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAE 252
            +  +SE     TGL  V   INHSC PN  + F     G   VVRA++ +  G E
Sbjct: 52  LSRLDSEYDIDATGLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEE 107

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 407
           +L      L  +L  L D+ EAL   +  + +  R   + HP          +L   LGD
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGD 61

Query: 408 TENAIKSMTEAVEILR 423
            + A++ + +A+ +  
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 212 GTGLYPVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAE 252
                 +   INHSC PN  L+F         V+ A++ +  G E
Sbjct: 68  ARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEE 112

Putative methyl transferase, based on outlier plant homologues. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
KOG2084	482	consensus Predicted histone tail methylase contain	99.79
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.61
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.6
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.35
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	99.09
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	98.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.92
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	98.77
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.74
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.67
PRK15359	144	type III secretion system chaperone protein SscB;	98.54
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.5
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.44
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.44
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.4
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.39
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.32
PRK10803	263	tol-pal system protein YbgF; Provisional	98.31
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.3
KOG2589	453	consensus Histone tail methylase [Chromatin struct	98.29
KOG0553	304	consensus TPR repeat-containing protein [General f	98.28
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.27
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	98.24
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.17
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.16
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.1
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.05
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.02
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.01
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.0
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.98
PF12688	120	TPR_5: Tetratrico peptide repeat	97.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.93
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	97.9
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.88
PF13512	142	TPR_18: Tetratricopeptide repeat	97.84
KOG1080	1005	consensus Histone H3 (Lys4) methyltransferase comp	97.8
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.8
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.78
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.77
PRK11189	296	lipoprotein NlpI; Provisional	97.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.75
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.73
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.73
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.72
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.71
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.67
PF13371	73	TPR_9: Tetratricopeptide repeat	97.67
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.66
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.65
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.63
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.6
KOG4442	729	consensus Clathrin coat binding protein/Huntingtin	97.59
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.59
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.57
PRK15331	165	chaperone protein SicA; Provisional	97.56
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.55
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.55
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.46
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.44
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.42
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.37
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.34
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.3
PRK04841	903	transcriptional regulator MalT; Provisional	97.27
KOG4234	271	consensus TPR repeat-containing protein [General f	97.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.21
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.18
PRK10803	263	tol-pal system protein YbgF; Provisional	97.17
PRK12370	553	invasion protein regulator; Provisional	97.13
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.13
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.12
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.12
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.11
PRK15359	144	type III secretion system chaperone protein SscB;	97.08
PRK12370	553	invasion protein regulator; Provisional	97.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.05
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.05
COG2940	480	Proteins containing SET domain [General function p	97.03
PF12688	120	TPR_5: Tetratrico peptide repeat	96.96
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.91
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.84
KOG1125	579	consensus TPR repeat-containing protein [General f	96.81
PRK04841	903	transcriptional regulator MalT; Provisional	96.8
KOG1126	638	consensus DNA-binding cell division cycle control	96.78
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.72
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.67
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.65
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.62
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.61
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.59
PRK11189	296	lipoprotein NlpI; Provisional	96.57
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.53
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.53
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.42
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.41
PRK14574	822	hmsH outer membrane protein; Provisional	96.39
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.36
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	96.35
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.34
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.32
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.3
KOG1126	638	consensus DNA-binding cell division cycle control	96.29
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.29
KOG0547	606	consensus Translocase of outer mitochondrial membr	96.2
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.17
KOG1082	364	consensus Histone H3 (Lys9) methyltransferase SUV3	96.15
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.14
KOG1585	308	consensus Protein required for fusion of vesicles	96.11
KOG4555	175	consensus TPR repeat-containing protein [Function	96.1
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.09
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.08
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	96.07
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.04
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.02
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.97
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.88
KOG2076	895	consensus RNA polymerase III transcription factor	95.86
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.8
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	95.8
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.73
KOG2003	840	consensus TPR repeat-containing protein [General f	95.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.62
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.61
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.58
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.51
KOG1083	1306	consensus Putative transcription factor ASH1/LIN-5	95.48
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.45
KOG1141	1262	consensus Predicted histone methyl transferase [Ch	95.44
KOG2076	895	consensus RNA polymerase III transcription factor	95.4
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.4
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.37
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.28
KOG3060	289	consensus Uncharacterized conserved protein [Funct	95.28
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.23
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.15
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.14
PF13371	73	TPR_9: Tetratricopeptide repeat	95.09
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.01
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.98
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.94
KOG2003	840	consensus TPR repeat-containing protein [General f	94.9
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.89
KOG0553	304	consensus TPR repeat-containing protein [General f	94.85
KOG1085	392	consensus Predicted methyltransferase (contains a	94.84
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.83
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.79
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.76
KOG0547	606	consensus Translocase of outer mitochondrial membr	94.72
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.66
PLN03158	396	methionine aminopeptidase; Provisional	94.64
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.58
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.53
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.34
KOG1129	478	consensus TPR repeat-containing protein [General f	94.32
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.29
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.29
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.17
KOG1125	579	consensus TPR repeat-containing protein [General f	94.13
KOG0508	615	consensus Ankyrin repeat protein [General function	93.96
KOG0508	615	consensus Ankyrin repeat protein [General function	93.9
KOG1128	777	consensus Uncharacterized conserved protein, conta	93.83
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.83
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.62
PRK15331	165	chaperone protein SicA; Provisional	93.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	93.6
PF13428	44	TPR_14: Tetratricopeptide repeat	93.57
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	93.46
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	93.45
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.43
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.3
PRK14574	822	hmsH outer membrane protein; Provisional	93.22
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.18
PF13428	44	TPR_14: Tetratricopeptide repeat	93.1
COG4783	484	Putative Zn-dependent protease, contains TPR repea	93.06
PLN03218	1060	maturation of RBCL 1; Provisional	93.04
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	93.03
PLN03218	1060	maturation of RBCL 1; Provisional	93.02
PLN03077	857	Protein ECB2; Provisional	93.01
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	92.97
KOG2857	157	consensus Predicted MYND Zn-finger protein/hormone	92.87
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.76
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.61
KOG1586	288	consensus Protein required for fusion of vesicles	92.36
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.33
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	92.31
PRK14720	906	transcript cleavage factor/unknown domain fusion p	92.24
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	92.13
KOG1585	308	consensus Protein required for fusion of vesicles	92.1
KOG1586	288	consensus Protein required for fusion of vesicles	92.04
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	92.04
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	91.8
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	91.75
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.46
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	91.38
KOG1129	478	consensus TPR repeat-containing protein [General f	91.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	91.19
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.03
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	90.92
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.92
PF13512	142	TPR_18: Tetratricopeptide repeat	90.44
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	90.42
KOG4555	175	consensus TPR repeat-containing protein [Function	90.4
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.37
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	90.32
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	90.22
PF13431	34	TPR_17: Tetratricopeptide repeat	90.14
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.0
PF13431	34	TPR_17: Tetratricopeptide repeat	89.82
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.28
PLN03077	857	Protein ECB2; Provisional	89.06
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	88.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	88.91
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	88.75
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	88.68
KOG3612	588	consensus PHD Zn-finger protein [General function	88.27
COG4700	251	Uncharacterized protein conserved in bacteria cont	88.2
KOG3785	557	consensus Uncharacterized conserved protein [Funct	88.19
COG4700	251	Uncharacterized protein conserved in bacteria cont	87.96
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.95
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.71
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	87.7
KOG2796	366	consensus Uncharacterized conserved protein [Funct	87.55
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	87.43
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.42
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	87.19
KOG4234	271	consensus TPR repeat-containing protein [General f	87.18
PRK00418	62	DNA gyrase inhibitor; Reviewed	87.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	86.31
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.27
PF09311	181	Rab5-bind: Rabaptin-like protein; InterPro: IPR015	85.73
PRK11906	458	transcriptional regulator; Provisional	85.64
COG3947	361	Response regulator containing CheY-like receiver a	85.59
PLN02789	320	farnesyltranstransferase	85.55
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	85.17
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	85.07
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.02
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	84.78
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	84.74
PRK01343	57	zinc-binding protein; Provisional	84.65
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	84.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	83.78
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	83.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	83.53
PRK10941	269	hypothetical protein; Provisional	83.3
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	83.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	82.92
COG3024	65	Uncharacterized protein conserved in bacteria [Fun	82.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	82.62
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.14
PLN02789	320	farnesyltranstransferase	81.95
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	81.78
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.75
KOG0495	913	consensus HAT repeat protein [RNA processing and m	81.66
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	81.66
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	81.33
PF09311	181	Rab5-bind: Rabaptin-like protein; InterPro: IPR015	81.25
KOG3785	557	consensus Uncharacterized conserved protein [Funct	81.21
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	80.92
KOG1079	739	consensus Transcriptional repressor EZH1 [Transcri	80.77
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	80.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	80.71
KOG4317	383	consensus Predicted Zn-finger protein [Function un	80.7
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	80.12

>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]

Probab=99.79  E-value=1.6e-17  Score=171.84  Aligned_cols=390  Identities=21%  Similarity=0.267  Sum_probs=237.2

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchhhHhchhhhccCCC
Q 012772            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVT   82 (456)
Q Consensus         3 ~~i~~G~vil~e~P~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~~l~~~~~~~~~   82 (456)
                      .+|++|++|+.|.|++.+|..    ..|..|+.. ....|..|....+|++.++...|..|+++|.. ........  +.
T Consensus        32 ~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~  103 (482)
T KOG2084|consen   32 QAIEAGEVILEEEPLVVGPAS----KSCSRCLGC-SCDHCRRCLEAIECNKCQQRGWALCGKFACSA-DLAKLECE--PL  103 (482)
T ss_pred             cccCCCceEEecCcceeeecc----cCCcccccc-chhhhhcCCccHhhhhhhccCccccchhhcch-hhcccccc--ch
Confidence            589999999999999999997    445555544 55679999999999876666666688888877 33221110  00


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCcchHH--HHHHHhhhHHHHHHhhhcccchhhhcccCCcchhhhhcccCCCCCcc
Q 012772           83 PSIRLMLKLYLRRKLQNDNVIPSTTTDNYSL--VEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDI  160 (456)
Q Consensus        83 ~~~~l~~R~l~~~~~~~~~~~~~~~~~~~~~--~~~L~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (456)
                      .......++........      ..+..+..  +..+....+      ..+                         ....
T Consensus       104 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------~~~-------------------------~~~~  146 (482)
T KOG2084|consen  104 KLVGAPEECLALSSLHE------ESREAIVLLSLLEECSLSA------EKP-------------------------RLRL  146 (482)
T ss_pred             hhccchHHHHHhhcCCc------cccchHHHHHHHHHhhhhc------ccc-------------------------cHhH
Confidence            00000111111111100      01111110  001111000      000                         0000


Q ss_pred             cHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHhhHhccccccccCCCC----cceeeeccccccccCCCcCCCeeEEeC
Q 012772          161 DEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEG  236 (456)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~N~~~i~~~~~~----~~g~glyp~~sl~NHSC~PN~~~~f~~  236 (456)
                      .........   ..............+.+..++..+..|++.+.+....    .+|.|+||..+++||||.||+...|++
T Consensus       147 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~  223 (482)
T KOG2084|consen  147 DLSYLEHGA---TEDDQSHLLLVLAADCISKLFPSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDG  223 (482)
T ss_pred             HHhhHHHHh---hHHhhccccchhHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECC
Confidence            000000000   0000000000112234445555666666666665433    599999999999999999999999999


Q ss_pred             CEEEEEEecCCCCCC-ccc--CCh------hhHHHhhCC--ccccCCCCCCCcc--------------------cCC---
Q 012772          237 RLAVVRAVQHVPKGA-EGQ--FDD------IQESAILEG--YRCKDDGCSGFLL--------------------RDS---  282 (456)
Q Consensus       237 ~~~~vra~~~I~~Ge-e~~--~~~------~r~~~l~~~--f~C~C~~C~~~~~--------------------~~~---  282 (456)
                      ....+++...+.+++ +++  |.+      .|+..|...  |.|.|++|.++-.                    +..   
T Consensus       224 ~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~~~~~~~~~~~c~~~~~~~~~~~~~~~~  303 (482)
T KOG2084|consen  224 RGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPTELGTFLSSLRCENCTCGGLLGTSFLDK  303 (482)
T ss_pred             ceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCCccccchhhhhhcCCCCCCccCCCcccc
Confidence            999999999998887 543  443      266666543  8999999985311                    011   


Q ss_pred             CCCCeeeccCCCcCCHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH
Q 012772          283 DDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME  362 (456)
Q Consensus       283 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~  362 (456)
                      ....|.|..|.......++..........  .+..   .+.    ....+.+........+++|.........+..++..
T Consensus       304 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~----~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~  374 (482)
T KOG2084|consen  304 EDLQWPCTECALVRLKAYVVESREELQNE--LLDA---FSD----LLIEELLLLRQESLELPNDFEVLLLKLHLLFILGS  374 (482)
T ss_pred             cCCCccccccccchhHHHHHHHHHHHHhh--cccc---CCh----hhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHH
Confidence            12479999998876666555544333221  0011   111    11122333344456777776655555444444332


Q ss_pred             ----------ccCHHHHHHHH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          363 ----------LEDWKEALAYC--QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  430 (456)
Q Consensus       363 ----------~g~~~~A~~~~--~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h  430 (456)
                                .+.+..+..++  ...+.+++.+.|+.++..+...+.++.....+++...+++.......++....+.++
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (482)
T KOG2084|consen  375 LLGAFLSCSPNAELERLLNLFECRELLKALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDL  454 (482)
T ss_pred             HHhhhhccchhhHHHHHHHhhhhhHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHh
Confidence                      34566777776  999999999999999999999999999999988888999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHh
Q 012772          431 PFMKELILKLEEAQAEASY  449 (456)
Q Consensus       431 ~~~~~~~~~l~~~~~e~~~  449 (456)
                      .........+...+....+
T Consensus       455 ~~~~~~~~~~~~~~~~~~~  473 (482)
T KOG2084|consen  455 DKLSEEEQELEEERSEEGP  473 (482)
T ss_pred             hhhhHHHHHHhhhhhhhhh
Confidence            9888888887777766555

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.61  E-value=1.2e-14  Score=146.88  Aligned_cols=133  Identities=18%  Similarity=0.273  Sum_probs=128.4

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      -|..+..++++.+|+.+|++++.+.+.++|+.|+.++.++.+|+.+|...|+|++|..+|++++.|+++++|..||.++.
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            66678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      .+.+++.++..++++++|.++|++|++|+...+|++|+.+..+..+|+.+..-
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~  379 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK  379 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.60  E-value=3.1e-14  Score=144.04  Aligned_cols=132  Identities=14%  Similarity=0.139  Sum_probs=125.3

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+..+|+|+.|+.++++++++..+.+|-.|+.+..+..++|.+|..++++.+|+.+++++|.+++.++|++||.+|.
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            55567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      .+.+||.+|...|+++||..++++|++|.+..+|..||.+...+..++.+..
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~  336 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ  336 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888777653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.35  E-value=4.7e-12  Score=96.78  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=73.3

Q ss_pred             CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      |+.++.++.+++.+|..+|+|++|+.++++++.+ .+.+|++||.++..+++||.++..+|++++|++++++|++|.+.
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            7889999999999999999999999999999999 77889999999999999999999999999999999999999874

...

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=99.09  E-value=1.6e-10  Score=100.56  Aligned_cols=53  Identities=40%  Similarity=0.571  Sum_probs=44.6

Q ss_pred             cccCCCCcceeeeccccccccCCCcCCCeeEEe----CCEEEEEEecCCCCCCcccC
Q 012772          203 ICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEGQF  255 (456)
Q Consensus       203 i~~~~~~~~g~glyp~~sl~NHSC~PN~~~~f~----~~~~~vra~~~I~~Gee~~~  255 (456)
                      .........+.++||.++++||||.|||.+.|+    ++.++++|.|||++||||++
T Consensus       103 ~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i  159 (162)
T PF00856_consen  103 RSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFI  159 (162)
T ss_dssp             EEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEE
T ss_pred             cccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEE
Confidence            333444578999999999999999999999998    78999999999999999864

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.95  E-value=1.9e-10  Score=73.86  Aligned_cols=37  Identities=46%  Similarity=1.232  Sum_probs=32.7

Q ss_pred             CcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhc
Q 012772           30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (456)
Q Consensus        30 C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC   67 (456)
                      |++|+++ .+.+|++|+.|+|||++||+.+|..|+.||
T Consensus         1 C~~C~~~-~~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKP-ALKRCSRCKSVYYCSEECQRADWPYHKFEC   37 (37)
T ss_dssp             -TTTSSC-SSEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred             CcCCCCC-cCCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence            7889886 444999999999999999999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.92  E-value=3e-08  Score=87.65  Aligned_cols=126  Identities=16%  Similarity=0.037  Sum_probs=102.1

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ......+..+...|++++|+..+++++.+     .|++.....++.+++.++...|++++|++++++++.+.. .++..|
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~  109 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQAL  109 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHH
Confidence            33445566677889999999999999765     345556677899999999999999999999999998733 344557


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                      ..+|..+.++|.++..+|++++|+..+.+|+.+++..+|.+|+.+..+...|
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~  161 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL  161 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            7777788888888879999999999999999999999999996665544433

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=98.77  E-value=3.6e-09  Score=86.99  Aligned_cols=44  Identities=32%  Similarity=0.434  Sum_probs=38.2

Q ss_pred             eeccccccccCCCcCCCeeEEe--CC--EEEEEEecCCCCCCcccCCh
Q 012772          214 GLYPVISIINHSCLPNAVLVFE--GR--LAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       214 glyp~~sl~NHSC~PN~~~~f~--~~--~~~vra~~~I~~Gee~~~~~  257 (456)
                      .++|.++++||||.||+...+.  ++  .+.++|+|+|++||||++++
T Consensus        69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y  116 (116)
T smart00317       69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY  116 (116)
T ss_pred             ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence            3789999999999999998875  33  69999999999999998653

Putative methyl transferase, based on outlier plant homologues

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.74  E-value=2.2e-07  Score=76.41  Aligned_cols=115  Identities=14%  Similarity=0.058  Sum_probs=95.5

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      +.....+..+..+|++++|++.+++++..     +|+++....+...++.++...|++++|+.++++++..     .+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            34556667777899999999999888642     5777777888899999999999999999999998853     2677


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  438 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~  438 (456)
                      +.....++.+|.++..+|++++|.+++.++++.     .|+++.+.+...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~  117 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQK  117 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHh
Confidence            777888999999999999999999999999887     577777665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.67  E-value=1.3e-07  Score=71.89  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=65.1

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  382 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~  382 (456)
                      ..+...+..+..+|++++|++.+++++.+ .+.+|+.|+.++.++.+++.++..+|++++|+++++++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            34455667788899999999999999999 77889999999999999999999999999999999999999875

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.54  E-value=4.3e-06  Score=71.80  Aligned_cols=112  Identities=12%  Similarity=0.092  Sum_probs=90.1

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++.+        +|.-..++..++.++..+|++++|+..+++++.+        .|
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p   89 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DA   89 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CC
Confidence            3445567778899999999999988643        3344677889999999999999999999999853        45


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  442 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~  442 (456)
                      .-+..++++|.++..+|++++|++.|++|++     ..|+++...........
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHH
Confidence            5677899999999999999999999999987     45777776655544433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.50  E-value=2.1e-07  Score=61.39  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  432 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~  432 (456)
                      ++..+++||.+|..+|++++|++++++|++|.+..+|++||.
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            477899999999999999999999999999999999999994

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.49  E-value=2.2e-06  Score=76.02  Aligned_cols=129  Identities=15%  Similarity=0.104  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ......+..+...|++++|+..+++++...     |++.....++.+++.++..+|++++|+.++++++.+... .+..+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~  109 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSAL  109 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHH
Confidence            344556666778899999999999987653     334445678899999999999999999999999875211 11122


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      ..+|..+..+|.....+|++++|+..+++|+++++...+.++..+.++..-+..+
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  164 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT  164 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence            2334444444444445667899999999999999999998888877776665543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.44  E-value=1.9e-05  Score=67.54  Aligned_cols=113  Identities=12%  Similarity=0.093  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772          306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  385 (456)
Q Consensus       306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g  385 (456)
                      +.++.+...|..+..+|++++|+.+|+-+..+        ++.-..-+.+|+.++..+|+|++|++.|.+++.     +.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~   99 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IK   99 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cC
Confidence            45677778888899999999999998876532        344567778999999999999999999999884     44


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 012772          386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  439 (456)
Q Consensus       386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~  439 (456)
                      +++|.   .++++|..++..|+.++|++.++.|+..-.     ++|....+..+
T Consensus       100 ~ddp~---~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~  145 (157)
T PRK15363        100 IDAPQ---APWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQR  145 (157)
T ss_pred             CCCch---HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHH
Confidence            56654   689999999999999999999999998873     55655555444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.44  E-value=1.7e-06  Score=87.12  Aligned_cols=111  Identities=21%  Similarity=0.223  Sum_probs=86.0

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..|.++.+.|+..+|+..|.+++.+.     |+|   ++++++|+.+|.++|.+++|..++++++++        .|..+
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~-----p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~a  388 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLC-----PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFA  388 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------Chhhh
Confidence            45556677899999999999988643     444   567789999999999999999999998864        56778


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      ...++||.+|..+|++++|+..|++|++|        .|..++.+.++.-...|+
T Consensus       389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  389 AAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEM  435 (966)
T ss_pred             hhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHh
Confidence            88999999999999999999999999887        344455554444444333

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.40  E-value=1.2e-06  Score=95.56  Aligned_cols=126  Identities=18%  Similarity=0.173  Sum_probs=114.1

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      ....+|.+.++.+ .-+.+.+...+++--|+.+++.+..|+.++..+|+.++|+.+.+++.-+.+++.|.+||.+...+.
T Consensus       941 ~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen  941 EALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred             hhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence            3445678888877 666777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          397 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       397 ~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      +|+...+...+...|...+.+|+.+....+|++||.+..+..+++.+
T Consensus      1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred             HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence            99999999999999999999999999999999999998776555555

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.39  E-value=5.7e-07  Score=59.31  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ++.++++|+.+|..+|+|++|+.++++++.++++++|++||+
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            467889999999999999999999999999999999999995

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.32  E-value=1.4e-05  Score=79.26  Aligned_cols=106  Identities=18%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      +..+|..+...|+|++|++.|++++++     .|.+   ..++.+++.+|..+|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            455677777889999999999999763     4544   457789999999999999999999999875        344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  437 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~  437 (456)
                      .+..++.+|.++..+|++++|+..|++|+++     .|+++.....+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l  110 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL-----APGDSRFTKLI  110 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            4567899999999999999999999999974     46676665444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.31  E-value=1.6e-05  Score=75.19  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=88.5

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  398 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L  398 (456)
                      ..+|+|++|+..|+.++..     +|++.+...+++.+|.+|...|++++|+.++++++..+     |+||.....++++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~kl  223 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKV  223 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHH
Confidence            3468999999998888753     58888889999999999999999999999998887543     6899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       399 a~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                      |.++..+|++++|.+.|+++++.+     |+++........|
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL  260 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHH
Confidence            999999999999999999876543     4555554444444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.30  E-value=7.4e-06  Score=82.71  Aligned_cols=113  Identities=16%  Similarity=0.209  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      .+++...+..+.++|++++|..+|+.+++.        .+..+.+.++|+.+|.++|++++|+..|+.+|.|        
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------  417 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------  417 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------
Confidence            355667777788889999999988888754        4567788889999999999999999999888854        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      .|..|..|.++|.+|-.+|+..+|+..|.+|+.|        .|..++.-.+|+.+.
T Consensus       418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIY  466 (966)
T ss_pred             CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHh
Confidence            6777888888888888888888888888888775        345555555555554

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]

Probab=98.29  E-value=4.2e-07  Score=85.64  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=51.7

Q ss_pred             hccccccccCCCCcceeeecc-ccccccCCCcCCCeeEEeC-CEEEEEEecCCCCCCccc--CChhhHHHhh-CCccccC
Q 012772          197 ACNAHTICNSELRPLGTGLYP-VISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEGQ--FDDIQESAIL-EGYRCKD  271 (456)
Q Consensus       197 ~~N~~~i~~~~~~~~g~glyp-~~sl~NHSC~PN~~~~f~~-~~~~vra~~~I~~Gee~~--~~~~r~~~l~-~~f~C~C  271 (456)
                      .-|.|.|.=+.-.. -.-|+. -++++||+|.|||..+-.| .++.|+++|||.+|||||  |...   ..- +.-.|.|
T Consensus       175 g~nDFSvmyStRk~-caqLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~---fFG~~N~~CeC  250 (453)
T KOG2589|consen  175 GGNDFSVMYSTRKR-CAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSG---FFGENNEECEC  250 (453)
T ss_pred             cCCceeeeeecccc-hhhheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeeccc---ccCCCCceeEE
Confidence            46788886432111 123443 4678999999999987766 789999999999999997  4421   000 1236888


Q ss_pred             CCCC
Q 012772          272 DGCS  275 (456)
Q Consensus       272 ~~C~  275 (456)
                      ..|.
T Consensus       251 ~TCE  254 (453)
T KOG2589|consen  251 VTCE  254 (453)
T ss_pred             eecc
Confidence            8886

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=8.5e-06  Score=75.94  Aligned_cols=118  Identities=19%  Similarity=0.253  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      .+++-.+..+++..++|++|+..|.++++     |-|.|..+..   +=+.+|.++|.++.|++-|+.+|.        .
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyyc---NRAAAy~~Lg~~~~AVkDce~Al~--------i  144 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYYC---NRAAAYSKLGEYEDAVKDCESALS--------I  144 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHHH---HHHHHHHHhcchHHHHHHHHHHHh--------c
Confidence            34444556666777899999999999976     4577766544   557899999999999999999995        5


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      .|.....|-.||.+|..+|++++|+..|+||++|     -|+.+.++   ..|.-++..+..
T Consensus       145 Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K---~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  145 DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYK---SNLKIAEQKLNE  198 (304)
T ss_pred             ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHH---HHHHHHHHHhcC
Confidence            7888899999999999999999999999999985     45555444   555555554443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.27  E-value=3.3e-05  Score=65.17  Aligned_cols=109  Identities=20%  Similarity=0.303  Sum_probs=85.4

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .+...+..+..+|++++|++.+++++..     +|.+   ..++..++.++..+|++++|..++++++.+        +|
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p   82 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL--------DP   82 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CC
Confidence            3455666677889999999998887653     3443   567788999999999999999999988764        35


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  439 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~  439 (456)
                      .....++.+|.++...|++++|++.++++++.     .|+.+....+...
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~  127 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKER  127 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHH
Confidence            56777899999999999999999999999985     3555555444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=98.24  E-value=2.8e-05  Score=71.06  Aligned_cols=136  Identities=15%  Similarity=0.221  Sum_probs=99.7

Q ss_pred             CCeeeccCCCcCCHH--------HHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Q 012772          285 KGFTCQQCGLVRSKE--------EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKL  356 (456)
Q Consensus       285 ~~~~C~~C~~~~~~~--------~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L  356 (456)
                      ..|.|+.||-.....        +.+.+.+.+.... ....+.....+++|++.|+-++-. -.+.+..+...+.+.-.+
T Consensus        47 ~V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~-~~~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~Lrl  124 (214)
T PF09986_consen   47 EVWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRW-KPRDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRL  124 (214)
T ss_pred             eEEECCCCCCcccccccccCCHHHHHHHHHHHHhhc-ccCCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Confidence            358899999654332        2333322222221 111344455789999999888754 456677777899999999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          357 IKILMELEDWKEALAYCQLTIPVYQRVYPQF-----HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       357 ~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~-----hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      |-+|..+|+-++...+.++++..|+..|-.+     --.-...++-+|.++...|++++|.+++.+.+..-
T Consensus       125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            9999999999999999999999998877532     22446788899999999999999999998877643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.17  E-value=3.9e-05  Score=71.46  Aligned_cols=115  Identities=20%  Similarity=0.237  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ......+..+...|++++|+..+++++.     ..|.++....++..++.++..+|+|++|+..+++++..    + |++
T Consensus        34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~-p~~  103 (235)
T TIGR03302        34 EELYEEAKEALDSGDYTEAIKYFEALES-----RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----H-PNH  103 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----C-cCC
Confidence            3445666677788999999999888864     45788888888999999999999999999999999853    2 467


Q ss_pred             hHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELIL  438 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~--------g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~  438 (456)
                      |.....++.+|.++...        |++++|.+.+++++..     -|+++.....+.
T Consensus       104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~  156 (235)
T TIGR03302       104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKK  156 (235)
T ss_pred             CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHH
Confidence            77777889999998876        7888999999888754     455655544443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.16  E-value=1.1e-05  Score=62.28  Aligned_cols=83  Identities=20%  Similarity=0.235  Sum_probs=61.8

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  400 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  400 (456)
                      +|++++|+..++++++..     |.++ -......+|.+|..+|+|++|+.++++ +..     .+.+   ....+.+|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-----~~~~---~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-----DPSN---PDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-----HHCH---HHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-----CCCC---HHHHHHHHH
Confidence            689999999999998754     3232 334556689999999999999999988 221     1222   344445699


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 012772          401 LEWFLGDTENAIKSMTEA  418 (456)
Q Consensus       401 ~~~~~g~~~eA~~~l~~A  418 (456)
                      .+..+|++++|++.|++|
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999986

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.16  E-value=4.1e-05  Score=73.57  Aligned_cols=130  Identities=16%  Similarity=0.128  Sum_probs=98.4

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      +.|..+...|+|++|.+.|.++.....+ + .+....+..+..++.+|.+. ++++|++++++++.+|...  +.....|
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~-~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA  114 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEK-L-GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAA  114 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHH
Confidence            3444566778999999999999888776 3 33455778888888888777 9999999999999998743  5566678


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          393 LQYYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       393 ~~l~~La~~~~~~-g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      ..+.++|.+|... |++++|+++|++|+++++.. | ......+.+.+++.+..++..
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-~-~~~~a~~~~~~~A~l~~~l~~  170 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-G-SPHSAAECLLKAADLYARLGR  170 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-C-ChhhHHHHHHHHHHHHHHhCC
Confidence            8999999999998 99999999999999999997 2 223345566777777655443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.10  E-value=2.1e-05  Score=58.03  Aligned_cols=64  Identities=28%  Similarity=0.431  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI  421 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g-~~~eA~~~l~~Al~i  421 (456)
                      +.++..+|..+..+|+|++|+.++.+++.+        +|.-+..++++|.++..+| ++++|++.+++|+++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            456788999999999999999999999975        4666779999999999999 799999999999975

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.05  E-value=0.00028  Score=66.08  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=95.0

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....|......|++++|++.|++++.     ..|..+....+...++.+|..++++++|+.++++.+..     -|+||.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~~~~  104 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN  104 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcCCCc
Confidence            45566667788999999999998865     46788888889999999999999999999999998753     378999


Q ss_pred             HHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g---------------~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                      +...++.+|..+..++               +...+.+.+..--+++.. | |+++...+....|..++..+.
T Consensus       105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-y-P~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-Y-PNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-C-cCChhHHHHHHHHHHHHHHHH
Confidence            9999999998865554               222233333333333333 3 488888888888888876544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.02  E-value=0.00059  Score=62.15  Aligned_cols=131  Identities=20%  Similarity=0.194  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      ...+...|.....+|+|.+|++.++++...     .|+++....+...++.++...|+|++|+..+++.+..    + |.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~----y-P~   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL----Y-PN   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C-CC
Confidence            345677788888999999999999988653     6889999999999999999999999999999988753    3 57


Q ss_pred             ChHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHH--hcCCCCchHHHHHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDT----ENAIKSMTEAVEILRI--THGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~----~eA~~~l~~Al~i~~~--~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                      ||.+...++.+|..+..+.+-    +.-.+..++|+..++.  .-=|+++.+.+....|.+++..+-
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la  141 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA  141 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence            899999999999987765311    1111222233222221  123789999998888888876543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.01  E-value=0.00011  Score=63.18  Aligned_cols=93  Identities=20%  Similarity=0.141  Sum_probs=53.4

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..|..+..+|++++|+..|+.++..     .|+......+...|+.++..+|+|++|+..+..         .+..+..+
T Consensus        53 ~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~~  118 (145)
T PF09976_consen   53 QLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAFKA  118 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchHH
Confidence            3445555666777776666666542     123333334445566666667777666666533         12334445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      ....-+|.++..+|++++|+..|++|+
T Consensus       119 ~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  119 LAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            555566777777777777777666663

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.00  E-value=0.00011  Score=66.99  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=26.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .+++.++..+|++++|+.++++++..      +.++.....++.+|.++...|++++|..++.++++
T Consensus       103 ~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521       103 NNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444444444444321      11233333444445555555555555555555444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.98  E-value=8.7e-05  Score=66.79  Aligned_cols=94  Identities=12%  Similarity=0.059  Sum_probs=55.2

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      ..++.+..+.++|++..|.+-++++++.        +|....++..++.+|..+|+.+.|.+.+++++.        .+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--------l~p  100 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--------LAP  100 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--------cCC
Confidence            3455566677777777777777766643        333344455566666666666666666666653        345


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      .-|..++|.|-.+..+|++++|...|++|+
T Consensus       101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al  130 (250)
T COG3063         101 NNGDVLNNYGAFLCAQGRPEEAMQQFERAL  130 (250)
T ss_pred             CccchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence            555555555555555555555555555554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.94  E-value=0.00027  Score=58.28  Aligned_cols=100  Identities=20%  Similarity=0.192  Sum_probs=79.8

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      .++.|..+...|+.++|+.+|+++++     .|.......+++..++..+..+|++++|+...++.+.    -+|.+. .
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~-~   73 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDE-L   73 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc-c
Confidence            35667778889999999999999975     3566667788999999999999999999999998764    234322 2


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .+..-..+|.++.++|+.+||+..+-+++.
T Consensus        74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   74 NAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344445578899999999999999888775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.93  E-value=6.9e-05  Score=54.54  Aligned_cols=59  Identities=22%  Similarity=0.351  Sum_probs=52.9

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .+|..+...|+|++|+..+++++.        .+|.-...++.+|.++..+|++++|+.+|++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            578899999999999999999884        56889999999999999999999999999999864

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=97.90  E-value=6e-05  Score=82.57  Aligned_cols=131  Identities=12%  Similarity=0.060  Sum_probs=117.7

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      |..+...|++++|+....++.-+.++++|-+|+.+...+.+++......+....|+....+++.+....+|++||.++..
T Consensus       980 a~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen  980 AKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred             HHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence            34455678899999988888888899999999999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      ..+++.++...++++-|+.+++.|+++-...+|+.+-.+......++++..
T Consensus      1060 ~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~ 1110 (1236)
T KOG1839|consen 1060 FINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFE 1110 (1236)
T ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999877776666665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.88  E-value=0.00049  Score=62.76  Aligned_cols=93  Identities=11%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+...|++++|++.+++++..      +.++........++.++...|++++|.+++.+++..     .+.+   ...
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---~~~  171 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-----DPQR---PES  171 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCC---hHH
Confidence            34456679999999999988752      223444566788999999999999999999998864     2233   446


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +..+|.++...|++++|..++++++++
T Consensus       172 ~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       172 LLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            778999999999999999999999987

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.84  E-value=0.00035  Score=58.83  Aligned_cols=88  Identities=20%  Similarity=0.250  Sum_probs=75.1

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .+..+|......|+|++|++.++.+..     -.|..+..-++...|+.+|...++|++|+..+++.+.     +-|.||
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~-----ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp   81 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDT-----RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCC
Confidence            445666677788999999998887754     4588888889999999999999999999999998874     568999


Q ss_pred             HHHHHHHHHHHHHHHcCC
Q 012772          390 LLGLQYYTCGKLEWFLGD  407 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~  407 (456)
                      .+...++..|..+..+..
T Consensus        82 ~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   82 NVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             CccHHHHHHHHHHHHHhh
Confidence            999999999999888764

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]

Probab=97.80  E-value=1.2e-05  Score=87.35  Aligned_cols=41  Identities=32%  Similarity=0.531  Sum_probs=34.5

Q ss_pred             ccccccCCCcCCCeeE---EeC-CEEEEEEecCCCCCCcccCChh
Q 012772          218 VISIINHSCLPNAVLV---FEG-RLAVVRAVQHVPKGAEGQFDDI  258 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~---f~~-~~~~vra~~~I~~Gee~~~~~~  258 (456)
                      .+.++||||.|||...   .+| .+|+|.|.|+|++||||||+|.
T Consensus       939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk  983 (1005)
T KOG1080|consen  939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK  983 (1005)
T ss_pred             hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence            3578999999999664   334 5799999999999999999873

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.80  E-value=6.5e-06  Score=75.55  Aligned_cols=44  Identities=36%  Similarity=0.890  Sum_probs=40.6

Q ss_pred             CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchhh
Q 012772           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL   70 (456)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l   70 (456)
                      ..+|..|..+.+-.+|+.|+.|.||+++||+-+|..|+--|+.+
T Consensus       319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L  362 (396)
T KOG1710|consen  319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL  362 (396)
T ss_pred             cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            46788888888889999999999999999999999999999977

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.78  E-value=0.00012  Score=64.57  Aligned_cols=84  Identities=13%  Similarity=-0.066  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  428 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~  428 (456)
                      ....+..++..+..+|++++|+.++++++.+     .++++..+..++++|.++...|++++|++.+++|+.+.. .++.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~  107 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQ  107 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHH
Confidence            4677788999999999999999999999876     246677888999999999999999999999999998732 2333


Q ss_pred             CCchHHHHHH
Q 012772          429 NSPFMKELIL  438 (456)
Q Consensus       429 ~h~~~~~~~~  438 (456)
                      .+..+..+..
T Consensus       108 ~~~~la~i~~  117 (168)
T CHL00033        108 ALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHH
Confidence            3444444444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.78  E-value=0.00013  Score=55.72  Aligned_cols=93  Identities=20%  Similarity=0.275  Sum_probs=72.8

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+..+|++++|+..++++++.     .|.+.   .+...++.++...|++++|.+++++++..    . +.++   
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~---   68 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALEL-----DPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALEL----D-PDNA---   68 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C-Ccch---
Confidence            3444556679999999988888653     23333   66788999999999999999999988763    2 2222   


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ..++.+|.++..+|++++|.+++.+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            67889999999999999999999988764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.77  E-value=0.0003  Score=75.40  Aligned_cols=94  Identities=11%  Similarity=0.083  Sum_probs=69.3

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|+..++++++.     .|++   ..++..++.++..+|++++|+.++++++.+        .|..
T Consensus       369 ~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~  432 (615)
T TIGR00990       369 IKRASMNLELGDPDKAEEDFDKALKL-----NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDF  432 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccC
Confidence            34555566778888888888877653     3444   356677888888888888888888888754        3444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...+.+||.++..+|++++|+..+++|+.+
T Consensus       433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~  462 (615)
T TIGR00990       433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN  462 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            556778888888888888888888888764

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.76  E-value=0.0004  Score=67.19  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|+..|++++++     .|++   ..++..++.++..+|++++|++.+.+++.+        .|.-
T Consensus        68 ~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~  131 (296)
T PRK11189         68 YERGVLYDSLGLRALARNDFSQALAL-----RPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTY  131 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC
Confidence            34555566789999999988888753     3444   567788999999999999999999988863        3444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...+.++|.++...|++++|++.+++++++
T Consensus       132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        132 NYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            557888999999999999999999998874

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.75  E-value=0.00032  Score=65.07  Aligned_cols=100  Identities=18%  Similarity=0.126  Sum_probs=86.3

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      +.+.|-.+...|+|.+|...|+..+..     .|+...+.++++.|++.+..+|+|++|...+..+..-     -|.||-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence            455666677789999999988877653     5999999999999999999999999999999887652     267888


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .--.|++||.++..+|+.++|...|++...
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            888999999999999999999999987654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.73  E-value=0.00043  Score=66.51  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=80.1

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      .|......+++++|++.++++..++...  -.....+.++..+|.+|... |++++|++++++++++|+.--  ......
T Consensus        80 ~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~  155 (282)
T PF14938_consen   80 EAANCYKKGDPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAA  155 (282)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHH
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHH
Confidence            3334445569999999999999887542  12334588899999999998 999999999999999998642  334455


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      ..+.++|.++..+|+|++|.+.|++.....
T Consensus       156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  156 ECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            678899999999999999999999977643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.73  E-value=0.0011  Score=61.67  Aligned_cols=121  Identities=17%  Similarity=0.058  Sum_probs=89.6

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHh
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQRV  383 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~--------g~~~~A~~~~~~~l~~~e~~  383 (456)
                      ...+..+...|++++|+..++++++     ..|+++....++..++.++...        |++++|++.+++++..    
T Consensus        74 ~~la~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----  144 (235)
T TIGR03302        74 LDLAYAYYKSGDYAEAIAAADRFIR-----LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----  144 (235)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH-----HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----
Confidence            4455667788999999999999875     3578888777888888888875        8899999999888753    


Q ss_pred             cCCCChHHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          384 YPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       384 ~g~~hp~~~--------------~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      + |.++...              .....+|.++..+|++.+|+..++++++.     -|++|...+....++.+...+
T Consensus       145 ~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~a~~~l~~~~~~l  216 (235)
T TIGR03302       145 Y-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN-----YPDTPATEEALARLVEAYLKL  216 (235)
T ss_pred             C-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----CCCCcchHHHHHHHHHHHHHc
Confidence            2 2333222              22357889999999999999999998876     344566666666666665433

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.72  E-value=0.0004  Score=74.39  Aligned_cols=91  Identities=18%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+..+|++++|+..+++++.+        ++....++..++.++..+|++++|+.++++++.+     .+++   ...
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~  401 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSED---PDI  401 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHH
Confidence            34455789999999999988754        3345667788999999999999999999999864     2334   457


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++.+|.++..+|++++|+..|++|+++
T Consensus       402 ~~~lg~~~~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       402 YYHRAQLHFIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            889999999999999999999999876

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.71  E-value=0.0035  Score=53.65  Aligned_cols=100  Identities=17%  Similarity=0.154  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      .......+......++...+...++.+..     -+|++++-..+...++..+...|++++|...++.++..     .++
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d   80 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAK-----DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APD   80 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCC
Confidence            33444444455567888887776666643     25677777788888999999999999999999998762     256


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  417 (456)
                      ........+.||.++..+|++++|++.|++
T Consensus        81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   81 PELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            677788899999999999999999999865

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.67  E-value=0.00072  Score=72.50  Aligned_cols=91  Identities=11%  Similarity=-0.011  Sum_probs=48.1

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .|....+.|++++|+.++++++++        .|+-..++.+++.++.+++++++|+..+++++.        -.|..+.
T Consensus        92 La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--------~~p~~~~  155 (694)
T PRK15179         92 VARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--------GGSSSAR  155 (694)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--------cCCCCHH
Confidence            333344566667766666666542        222244455555555555555555555555542        2344444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .++.+|.++..+|++++|...|+++++
T Consensus       156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        156 EILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            555555555555555555555555554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.67  E-value=0.00024  Score=52.85  Aligned_cols=72  Identities=22%  Similarity=0.315  Sum_probs=60.4

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772          356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  435 (456)
Q Consensus       356 L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~  435 (456)
                      |..+|...++|++|++++++++..        +|.-...++..|.++..+|++++|...+++++     ..+|+++....
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-----~~~p~~~~~~~   67 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERAL-----ELSPDDPDARA   67 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHH-----HHCCCcHHHHH
Confidence            457889999999999999999865        66677788999999999999999999999999     45677777666


Q ss_pred             HHHHH
Q 012772          436 LILKL  440 (456)
Q Consensus       436 ~~~~l  440 (456)
                      +..+|
T Consensus        68 ~~a~l   72 (73)
T PF13371_consen   68 LRAML   72 (73)
T ss_pred             HHHhc
Confidence            55543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.66  E-value=0.00026  Score=70.40  Aligned_cols=73  Identities=15%  Similarity=0.084  Sum_probs=65.7

Q ss_pred             CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          344 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       344 p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +.+|....++.+++.+|..+|+|++|+..++++|++     .|+++.....++++|.+|..+|++++|+..|++|+++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            346777889999999999999999999999999965     4677776688999999999999999999999999997

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.65  E-value=0.0017  Score=58.78  Aligned_cols=112  Identities=7%  Similarity=0.010  Sum_probs=82.6

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HHHccC--HHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELED--WKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~-~~~~g~--~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      ..+..+...|++++|+..|++++++     .|++   ..++..++.+ +...|+  .++|.+.+++++.        -+|
T Consensus        78 ~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--------~dP  141 (198)
T PRK10370         78 LLGEYYLWRNDYDNALLAYRQALQL-----RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKALA--------LDA  141 (198)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--------hCC
Confidence            3445566789999999999988753     4555   4555778886 467777  5999999999885        344


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      .-...++.||..+..+|++++|+.+++++++...    ++.+... ++..++.++.
T Consensus       142 ~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~----~~~~r~~-~i~~i~~a~~  192 (198)
T PRK10370        142 NEVTALMLLASDAFMQADYAQAIELWQKVLDLNS----PRVNRTQ-LVESINMAKL  192 (198)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCccHHH-HHHHHHHHHH
Confidence            4456889999999999999999999999988643    3444443 3366655543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.63  E-value=0.00071  Score=75.40  Aligned_cols=108  Identities=12%  Similarity=0.029  Sum_probs=66.1

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  395 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l  395 (456)
                      ..+...|++++|+..+++++.+     .|+++   .++.+++.++..+|++++|+.++++++.+        +|.-+..+
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~  680 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALI  680 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            3344556666666655555432     34443   45566777777777777777777776642        33334567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          396 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       396 ~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      ++||.++..+|++++|+..|++|+++-     |+...+......+.+.+
T Consensus       681 ~nLA~al~~lGd~~eA~~~l~~Al~l~-----P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        681 RQLAYVNQRLDDMAATQHYARLVIDDI-----DNQALITPLTPEQNQQR  724 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCchhhhhhhHHHHHH
Confidence            777888878888888888888777654     45555554444444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.60  E-value=0.00039  Score=56.76  Aligned_cols=85  Identities=16%  Similarity=0.143  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  430 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h  430 (456)
                      +++..++..+..+|++++|++++.+++..     .++++.....++.+|.++...|++++|.+++++++..     .|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            45678899999999999999999998753     2566777888999999999999999999999999864     3666


Q ss_pred             chHHHHHHHHHHHHH
Q 012772          431 PFMKELILKLEEAQA  445 (456)
Q Consensus       431 ~~~~~~~~~l~~~~~  445 (456)
                      +.+......++.+..
T Consensus        73 ~~~~~~~~~~~~~~~   87 (119)
T TIGR02795        73 PKAPDALLKLGMSLQ   87 (119)
T ss_pred             CcccHHHHHHHHHHH
Confidence            655555555555543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=4.2e-05  Score=78.36  Aligned_cols=62  Identities=26%  Similarity=0.344  Sum_probs=40.8

Q ss_pred             ccccCCCcCCCeeE--EeCC--EEEEEEecCCCCCCcccCChh--hHHHhhCCccccCCCCCCCcccC
Q 012772          220 SIINHSCLPNAVLV--FEGR--LAVVRAVQHVPKGAEGQFDDI--QESAILEGYRCKDDGCSGFLLRD  281 (456)
Q Consensus       220 sl~NHSC~PN~~~~--f~~~--~~~vra~~~I~~Gee~~~~~~--r~~~l~~~f~C~C~~C~~~~~~~  281 (456)
                      -++||||+|||.+-  -.++  +|=+=|.++|++|||||++|.  |=..-...=.|.=+.|.|++...
T Consensus       195 RFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk  262 (729)
T KOG4442|consen  195 RFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGK  262 (729)
T ss_pred             HhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCC
Confidence            36899999999763  2343  455679999999999997764  20000001245556799987644

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.59  E-value=0.001  Score=66.82  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=56.0

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCc--cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV--NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~--~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      +..+..+|++++|++.+++++..     +|.+.  .....+..++.++..+|++++|+.++++++..        .|...
T Consensus       148 a~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~  214 (389)
T PRK11788        148 LEIYQQEKDWQKAIDVAERLEKL-----GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCV  214 (389)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCH
Confidence            33445566677776666665432     23222  23444556666677777777777777776643        22233


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ..++.+|.++...|++++|+++++++++.
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~  243 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEEQ  243 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45666777777777777777777776654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.57  E-value=0.001  Score=66.71  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=54.1

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-ChHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-HPLLG  392 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~-hp~~~  392 (456)
                      .+..+...|++++|+..++++++.     .|.+   ..++..++.++...|++++|+.++++++.     .|.. .....
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~~~~~  107 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKV-----DPET---VELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTREQRL  107 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCHHHHH
Confidence            333444556677777666666542     2322   34556666666777777777766665553     1221 12234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      ..++.||.++...|++++|+++++++++
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~  135 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVD  135 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            4566666666666666666666666654

>PRK15331 chaperone protein SicA; Provisional

Probab=97.56  E-value=0.0026  Score=54.84  Aligned_cols=108  Identities=9%  Similarity=0.145  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772          306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  385 (456)
Q Consensus       306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g  385 (456)
                      ++++.+...|-.+..+|++++|..+|+-+-     .+.|.++.   ....||.++..+++|++|+..+-.+..+     .
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~  101 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTL-----L  101 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----c
Confidence            345667778888899999999999887553     35566644   3578999999999999999999877643     3


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772          386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  435 (456)
Q Consensus       386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~  435 (456)
                      .+.|..   .+..|.-++.+|+.++|+..|+-|++      .++|+.+++
T Consensus       102 ~~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~------~~~~~~l~~  142 (165)
T PRK15331        102 KNDYRP---VFFTGQCQLLMRKAAKARQCFELVNE------RTEDESLRA  142 (165)
T ss_pred             cCCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh------CcchHHHHH
Confidence            344432   67889999999999999999999888      355665554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.003  Score=61.63  Aligned_cols=106  Identities=14%  Similarity=0.165  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC-------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-------VNLMQTREKLIKILMELEDWKEALAYCQLTIPVY  380 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h-------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  380 (456)
                      ....-+.+..+...|+|..|...|++++.......+-+.       .....++.||+..+.++++|.+|+++|.++|.+ 
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-  286 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-  286 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence            344445666778889999999999998876542211111       234566789999999999999999999999853 


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          381 QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       381 e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                          .+.|   .-.||.=|+++..+|+|+.|+..|++|+++
T Consensus       287 ----~~~N---~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  287 ----DPNN---VKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             ----CCCc---hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence                2333   457899999999999999999999999875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.55  E-value=0.0017  Score=57.32  Aligned_cols=72  Identities=13%  Similarity=0.027  Sum_probs=62.6

Q ss_pred             CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .++..+.++..++..+...|++++|+.++++++.+.     ++++..+..++.+|.++..+|++++|+..+++|+++
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            355567788999999999999999999999998753     345556789999999999999999999999999986

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.46  E-value=0.004  Score=53.31  Aligned_cols=115  Identities=19%  Similarity=0.217  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCC-C-------------ccHHHHHHHHHHHHHHccCHHHHHHHH
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-S-------------VNLMQTREKLIKILMELEDWKEALAYC  373 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~-h-------------~~~~~~~~~L~~~~~~~g~~~~A~~~~  373 (456)
                      ++++...+......|+...+++.+++++.++..-+-+. .             ...+.+...++..+...|++++|+.++
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34444445445556788888888888888775433332 1             223455566777788899999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          374 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  430 (456)
Q Consensus       374 ~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h  430 (456)
                      ++++.+        +|.--..+..|-.++..+|+..+|...|++..+.+...+|-+-
T Consensus        86 ~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   86 QRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             HHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence            999863        5555566777888899999999999999999999999999754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.46  E-value=0.00061  Score=61.44  Aligned_cols=96  Identities=13%  Similarity=0.035  Sum_probs=80.0

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .|..+...|..+.|.+.|++++.+     .|++   .++++|-+..+..+|++++|..++++++..      |..+..+.
T Consensus        75 ~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~  140 (250)
T COG3063          75 RAHYYQKLGENDLADESYRKALSL-----APNN---GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSD  140 (250)
T ss_pred             HHHHHHHcCChhhHHHHHHHHHhc-----CCCc---cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcch
Confidence            444466789999999999998753     3444   666788999999999999999999988643      77788888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      ++-|+|...+.+|+.+.|+.+|++|+++.-
T Consensus       141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp  170 (250)
T COG3063         141 TLENLGLCALKAGQFDQAEEYLKRALELDP  170 (250)
T ss_pred             hhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence            999999999999999999999999998643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.00068  Score=68.31  Aligned_cols=109  Identities=17%  Similarity=0.248  Sum_probs=84.0

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  395 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l  395 (456)
                      ......+.|.+|...++.++.....+ .+.-+....+..+||.+|.+++.+++|+.+++++|..        .|.-+..+
T Consensus       422 vvay~~~~y~~A~~~f~~~l~~ik~~-~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~  492 (611)
T KOG1173|consen  422 VVAYTYEEYPEALKYFQKALEVIKSV-LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTH  492 (611)
T ss_pred             heeehHhhhHHHHHHHHHHHHHhhhc-cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHH
Confidence            33445578899999999988554443 3444467788899999999999999999999999953        44556677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772          396 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  438 (456)
Q Consensus       396 ~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~  438 (456)
                      -.+|-+|..+|+++.|+++|.||+.+     -|+...+.+++.
T Consensus       493 asig~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~  530 (611)
T KOG1173|consen  493 ASIGYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK  530 (611)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence            78899999999999999999999975     344544554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.42  E-value=0.003  Score=68.10  Aligned_cols=115  Identities=12%  Similarity=0.033  Sum_probs=81.4

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+..+|++++|+..+++++.+     .|+++   .+...++.++..+|++++|+..+++++..        +|..
T Consensus       288 ~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~  351 (656)
T PRK15174        288 TLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE--------KGVT  351 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cccc
Confidence            34566677889999999888888653     45554   45667888999999999999998887753        3333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      ......+|.++..+|++++|++.|++++++.-..+.   +...+....+.++..
T Consensus       352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~  402 (656)
T PRK15174        352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQIS  402 (656)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHH
Confidence            445556688888899999999999999888665542   233445555555443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.37  E-value=0.0018  Score=71.59  Aligned_cols=103  Identities=18%  Similarity=0.042  Sum_probs=78.5

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----------
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV-----------  379 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~-----------  379 (456)
                      ....|..+..+|++++|+..+++++.+     .|.   ...++..++.+|..+|+|++|+.++++++..           
T Consensus        25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~   96 (899)
T TIGR02917        25 LIEAAKSYLQKNKYKAAIIQLKNALQK-----DPN---DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL   96 (899)
T ss_pred             HHHHHHHHHHcCChHhHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence            345556667789999999988888743     333   3467778999999999999999998887642           


Q ss_pred             ----------------HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          380 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       380 ----------------~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                                      ++...+...+..+..+..+|..+...|++++|...|++++++
T Consensus        97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  154 (899)
T TIGR02917        97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI  154 (899)
T ss_pred             HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                            222333466777788888999999999999999999988764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.36  E-value=0.0022  Score=69.13  Aligned_cols=93  Identities=13%  Similarity=0.121  Sum_probs=72.4

Q ss_pred             HHHHhhhhcCChHH----HHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          313 KKTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       313 ~~a~~~~~~g~~~~----a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ..+..+...|++++    |+..+++++.+     .|+   ...++..++.++..+|++++|+.++++++..        +
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~---~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~  314 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSD---NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--------H  314 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence            34555667888875    67777777653     344   3577788999999999999999999998863        3


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      |.....+..||.++...|++++|+..|+++++.
T Consensus       315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        315 PDLPYVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            334456778999999999999999999988874

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.34  E-value=0.0019  Score=69.28  Aligned_cols=96  Identities=9%  Similarity=-0.086  Sum_probs=81.0

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...|..+..++++++|+..+++++..        .|+-...+..++.++.++|++++|.++|++++.        .||.-
T Consensus       124 ~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~  187 (694)
T PRK15179        124 ILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEF  187 (694)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCc
Confidence            44555667788999999988888643        444567788999999999999999999999874        67777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      ...+..+|.++...|+.++|...|++|++...
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            88999999999999999999999999988653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.30  E-value=0.0017  Score=47.06  Aligned_cols=59  Identities=22%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      ..|..+..+|++++|++.++++++        .+|.-..++..++.++..+|++++|+.++++++..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345667789999999999988864        23557888899999999999999999999998854

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.27  E-value=0.0046  Score=69.39  Aligned_cols=108  Identities=10%  Similarity=0.103  Sum_probs=89.5

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  395 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l  395 (456)
                      ..+...|++++|...+++++...+. .++.+. ...+...++.++...|++++|..++++++.+.+...+..++..+..+
T Consensus       499 ~~~~~~G~~~~A~~~~~~al~~~~~-~g~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  576 (903)
T PRK04841        499 EVHHCKGELARALAMMQQTEQMARQ-HDVYHY-ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL  576 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhh-hcchHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            3345689999999999999877654 344333 35577889999999999999999999999998887666777777778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          396 YTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       396 ~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      ..+|.++..+|++++|...+++++.+....
T Consensus       577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~  606 (903)
T PRK04841        577 RIRAQLLWEWARLDEAEQCARKGLEVLSNY  606 (903)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence            889999999999999999999999987743

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.24  E-value=0.0063  Score=53.79  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 012772          297 SKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT  376 (456)
Q Consensus       297 ~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~  376 (456)
                      +.++..+...++..+-.+...++..|+|++|.+-|..+++++....   .....-++.+-+.+.++++.|+.|+.-|.++
T Consensus        84 ~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   84 SDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            3344455566677777788888899999999999999998753321   1234445567778899999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          377 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       377 l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +.+        .|..-..+..=|.+|-+..++++|+.=|++.+++
T Consensus       161 iel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  161 IEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             Hhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            964        4455555667788999999999999988877664

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.21  E-value=0.0033  Score=70.15  Aligned_cols=92  Identities=12%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  400 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  400 (456)
                      .|++++|+..+++++++     .|   . ..++.+++.++.++|++++|+..+++++..        .|.-+..+++||.
T Consensus       589 ~Gr~~eAl~~~~~AL~l-----~P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~  651 (987)
T PRK09782        589 PGQPELALNDLTRSLNI-----AP---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGY  651 (987)
T ss_pred             CCCHHHHHHHHHHHHHh-----CC---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            47888888877777643     23   2 467788899999999999999999988854        3444468899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          401 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       401 ~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                      ++..+|++++|++.|++|+++     .|+++...
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~  680 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKG-----LPDDPALI  680 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh-----CCCCHHHH
Confidence            999999999999999999885     56666544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.18  E-value=0.003  Score=46.30  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHH
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV  379 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~  379 (456)
                      .....+..+...|++++|+..|++++++     .|+   -..++.+++.++..+| ++++|++++++++.+
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            3445666778899999999999999865     344   4568899999999999 799999999999864

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.17  E-value=0.019  Score=54.32  Aligned_cols=85  Identities=15%  Similarity=0.161  Sum_probs=66.5

Q ss_pred             HHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          352 TREKLIK-ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  430 (456)
Q Consensus       352 ~~~~L~~-~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h  430 (456)
                      ..+..+. ++...|+|++|+..+++.+..    | |+++.....++.||.+|..+|++++|+..|++++.-.     |+|
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~----y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s  213 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK----Y-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKS  213 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH----C-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC
Confidence            3344444 446779999999998887754    3 4677778899999999999999999999988887654     688


Q ss_pred             chHHHHHHHHHHHHHH
Q 012772          431 PFMKELILKLEEAQAE  446 (456)
Q Consensus       431 ~~~~~~~~~l~~~~~e  446 (456)
                      |...+.+.+++.+..+
T Consensus       214 ~~~~dAl~klg~~~~~  229 (263)
T PRK10803        214 PKAADAMFKVGVIMQD  229 (263)
T ss_pred             cchhHHHHHHHHHHHH
Confidence            8888888877776543

>PRK12370 invasion protein regulator; Provisional

Probab=97.13  E-value=0.0023  Score=67.60  Aligned_cols=84  Identities=12%  Similarity=0.041  Sum_probs=63.1

Q ss_pred             CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012772          322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  401 (456)
Q Consensus       322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~  401 (456)
                      +++++|+..+++++++     .|++   ..++..++.++..+|++++|+.++++++.+     .|++   +..++.+|.+
T Consensus       318 ~~~~~A~~~~~~Al~l-----dP~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~  381 (553)
T PRK12370        318 NAMIKAKEHAIKATEL-----DHNN---PQALGLLGLINTIHSEYIVGSLLFKQANLL-----SPIS---ADIKYYYGWN  381 (553)
T ss_pred             hHHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHH
Confidence            4567777777777643     4554   455667888888899999999999988863     2344   4467888999


Q ss_pred             HHHcCCHHHHHHHHHHHHHH
Q 012772          402 EWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       402 ~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +..+|++++|+..+++|+++
T Consensus       382 l~~~G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKL  401 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhc
Confidence            98999999999998888775

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.13  E-value=0.0074  Score=58.84  Aligned_cols=102  Identities=13%  Similarity=0.144  Sum_probs=73.5

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  398 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L  398 (456)
                      +--|+|++|+...+.-+++.+ -+|. ....-++..+|++.++-+|+|+.|+++|++++.+...+  ++-..-|...|.|
T Consensus       206 YlLGdf~~ai~~H~~RL~ia~-efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSL  281 (639)
T KOG1130|consen  206 YLLGDFDQAIHFHKLRLEIAQ-EFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSL  281 (639)
T ss_pred             eeeccHHHHHHHHHHHHHHHH-Hhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHh
Confidence            345789999888776666643 3442 23345677888888888999999999998888765543  4455567777788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          399 GKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       399 a~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      |..|.-+.+++.|++|..+-++|-+.
T Consensus       282 gNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  282 GNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877777778888887777777554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.12  E-value=0.0076  Score=69.42  Aligned_cols=97  Identities=14%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccH-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-----------MQTREKLIKILMELEDWKEALAYCQLTIPVY  380 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~-----------~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  380 (456)
                      ...+..+..+|++++|+..++++++.     .|.+...           ......++.++...|++++|+.++++++.+ 
T Consensus       307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-  380 (1157)
T PRK11447        307 GALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-  380 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence            44556677899999999999998764     2433321           122345577888999999999999999875 


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          381 QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       381 e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                             +|.-...++.||.++..+|++++|++.|++|+++
T Consensus       381 -------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        381 -------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM  414 (1157)
T ss_pred             -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                   3344567889999999999999999999999976

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.12  E-value=0.0034  Score=62.14  Aligned_cols=92  Identities=15%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      .+..+|++++|+..+++++++     .|.+   ..+...++.++...|++++|+.++++.+....    .........+.
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~----~~~~~~~~~~~  190 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD----CSSMLRGHNWW  190 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC----CCcchhHHHHH
Confidence            345689999999999998764     3455   45567889999999999999999999886543    22223344677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          397 TCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       397 ~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .+|.++..+|++++|...|++++.
T Consensus       191 ~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         191 HLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhc
Confidence            899999999999999999999843

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.11  E-value=0.038  Score=51.12  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=97.2

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .+.+++......|+|++|++.++.+..     -||..+..-++.-.++.++.+.+++++|+.+..+-+..     -|.||
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~~~  105 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPTHP  105 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCCC
Confidence            344455555668999999999988753     57888888889999999999999999999998887643     36899


Q ss_pred             HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~-----g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                      .....++-.|..+...     .+...+...+....+.+.+.  |+++.+.+...+|..+...+-
T Consensus       106 n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA  167 (254)
T COG4105         106 NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALA  167 (254)
T ss_pred             ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHH
Confidence            9999999999987754     34455666666666666665  688888888877777765443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.08  E-value=0.0027  Score=54.42  Aligned_cols=67  Identities=12%  Similarity=-0.029  Sum_probs=56.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772          354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  433 (456)
Q Consensus       354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~  433 (456)
                      ..++.++...|++++|+.++++++.        ..|.-...++++|.++..+|++++|+..|++|+++     .|+++..
T Consensus        28 ~~~g~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a   94 (144)
T PRK15359         28 YASGYASWQEGDYSRAVIDFSWLVM--------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEP   94 (144)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHH
Confidence            3578899999999999999999874        34556778899999999999999999999999974     4555544

>PRK12370 invasion protein regulator; Provisional

Probab=97.07  E-value=0.0046  Score=65.32  Aligned_cols=92  Identities=15%  Similarity=0.005  Sum_probs=65.3

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+..+|++++|+..+++++++     .|+++   .++..++.++..+|++++|+.++++++.+     .|.++..  
T Consensus       344 lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~---~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~P~~~~~--  408 (553)
T PRK12370        344 LGLINTIHSEYIVGSLLFKQANLL-----SPISA---DIKYYYGWNLFMAGQLEEALQTINECLKL-----DPTRAAA--  408 (553)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCChhh--
Confidence            344456789999999999998763     45554   45678899999999999999999998754     2334332  


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                       .+.++.++...|++++|+..+++++..
T Consensus       409 -~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        409 -GITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             -HHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence             223444555678888888887776543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.05  E-value=0.0015  Score=47.67  Aligned_cols=52  Identities=12%  Similarity=0.109  Sum_probs=43.1

Q ss_pred             HHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          361 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       361 ~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      +..|+|++|++++++++..        +|.-....+.||.++..+|++++|...+++++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5689999999999999853        455566777999999999999999999988765

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.05  E-value=0.0057  Score=70.45  Aligned_cols=94  Identities=13%  Similarity=0.100  Sum_probs=74.4

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH----
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL----  390 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~----  390 (456)
                      +..+...|++++|+..++++++.     .|.+   ..++..|+.+|..+|++++|+.++++++..    .| +++.    
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~-----~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~----~p-~~~~~~~~  342 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRA-----NPKD---SEALGALGQAYSQQGDRARAVAQFEKALAL----DP-HSSNRDKW  342 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-CccchhHH
Confidence            45566789999999999999764     3444   567789999999999999999999998864    23 2221    


Q ss_pred             -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          391 -------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       391 -------~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                             ....+..+|.++...|++++|+..|++|+++
T Consensus       343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                   1223456688999999999999999999987

>COG2940 Proteins containing SET domain [General function prediction only]

Probab=97.03  E-value=0.00044  Score=71.53  Aligned_cols=61  Identities=28%  Similarity=0.408  Sum_probs=44.8

Q ss_pred             ccccccCCCcCCCeeEEeC----CEEEEEEecCCCCCCcccCChh-----hH--HHh---hCCccccCCCCCCCc
Q 012772          218 VISIINHSCLPNAVLVFEG----RLAVVRAVQHVPKGAEGQFDDI-----QE--SAI---LEGYRCKDDGCSGFL  278 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f~~----~~~~vra~~~I~~Gee~~~~~~-----r~--~~l---~~~f~C~C~~C~~~~  278 (456)
                      .+.++||||.||+..+..+    .++.++|+++|.+|+|+||.+.     .+  ...   ..+..|.+.+|.+.+
T Consensus       405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (480)
T COG2940         405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHTM  479 (480)
T ss_pred             ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCCC
Confidence            4568999999999988643    2789999999999999997652     11  111   224578888888643

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.96  E-value=0.0066  Score=50.04  Aligned_cols=64  Identities=16%  Similarity=0.013  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      +...++.++-.+|+.++|+.+|++++.     .|...+.....+..+|..+..+|++++|+.++++++.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            567888999999999999999999986     4666777788999999999999999999999998875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.033  Score=52.96  Aligned_cols=127  Identities=15%  Similarity=0.166  Sum_probs=81.3

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QF  387 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-~~  387 (456)
                      ..+.+.+..|+..|=++.|+++|..+...        ....-.++..|..+|-...+|++|++..+++..+    -| ++
T Consensus       108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q~~  175 (389)
T COG2956         108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQTY  175 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCccc
Confidence            34445556666777778887777666431        1123466777888888888888888887765532    22 45


Q ss_pred             ChHHHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDT---------------------------ENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~---------------------------~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                      ...+|.-+=+||..+....+.                           .-+..-|++|++.++...-.|+.++.+++.+|
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L  255 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML  255 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            566666666666655443333                           33333344555666666667888888999999


Q ss_pred             HHHHHHH
Q 012772          441 EEAQAEA  447 (456)
Q Consensus       441 ~~~~~e~  447 (456)
                      .++..++
T Consensus       256 ~~~Y~~l  262 (389)
T COG2956         256 YECYAQL  262 (389)
T ss_pred             HHHHHHh
Confidence            8887654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.84  E-value=0.0054  Score=51.46  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ......++..+...|++++|.+++++++..        +|.....++.+|.++..+|++++|.+++++++++
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            466788999999999999999999887753        3445677889999999999999999999999886

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.81  E-value=0.0024  Score=64.66  Aligned_cols=97  Identities=19%  Similarity=0.221  Sum_probs=81.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      |.-.|+|++|++.|+.++..     -|++   ..+++.|+..+..-.+.++|+..|+++|.+        -|.....-|+
T Consensus       440 y~ls~efdraiDcf~~AL~v-----~Pnd---~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------qP~yVR~RyN  503 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQV-----KPND---YLLWNRLGATLANGNRSEEAISAYNRALQL--------QPGYVRVRYN  503 (579)
T ss_pred             HhcchHHHHHHHHHHHHHhc-----CCch---HHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------CCCeeeeehh
Confidence            55678999999999988743     3555   456789999999999999999999999974        3455667799


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          398 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  430 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h  430 (456)
                      ||..++++|.|+||.++|-.|+.+..+..+..-
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~  536 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNK  536 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhccccccc
Confidence            999999999999999999999999999765443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.80  E-value=0.024  Score=63.68  Aligned_cols=110  Identities=15%  Similarity=-0.008  Sum_probs=87.2

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+..+|++++|...+++++.+.+..-++.++....+...++.++...|++++|..++++++.+.+...   .....
T Consensus       536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~  612 (903)
T PRK04841        536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQL  612 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHH
Confidence            345556788999999999999988876654444444455566788899999999999999999999877433   23455


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      ..+..+|.++...|++++|...+.++..+....
T Consensus       613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~  645 (903)
T PRK04841        613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNG  645 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            677889999999999999999999999876553

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=0.0013  Score=67.51  Aligned_cols=68  Identities=13%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      +.-.++++.|+.+|.++|+++.|+-++++++.        ..|.-...+-.+|.++..+|+.++|+.+|++|..+-
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld  553 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD  553 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence            44567888999999999999999999998885        467777788888999999999999999999987643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0054  Score=62.04  Aligned_cols=101  Identities=17%  Similarity=0.143  Sum_probs=71.3

Q ss_pred             CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          344 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       344 p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      |++|.+.   +.++.+....+.|.+|..+++.++...+.+.+.- +.-.-.+.+||-++.+++++++|+.++++|+..-.
T Consensus       411 P~Dplv~---~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  411 PSDPLVL---HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             CCcchhh---hhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            5555543   4677777778999999999999998777666532 24445689999999999999999999999998654


Q ss_pred             HhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          424 ITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       424 ~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      +. -..|..+.=+...+......+.+
T Consensus       487 k~-~~~~asig~iy~llgnld~Aid~  511 (611)
T KOG1173|consen  487 KD-ASTHASIGYIYHLLGNLDKAIDH  511 (611)
T ss_pred             Cc-hhHHHHHHHHHHHhcChHHHHHH
Confidence            42 12333344444555555555544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.72  E-value=0.025  Score=62.63  Aligned_cols=62  Identities=16%  Similarity=0.182  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      ..++..++.+|..+|++++|++++++++..        +|.-...++.+|.++...|+ .+|+.+++++++
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~  831 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALK  831 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence            345566677777777777777777766643        12223344555555555555 445555555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.67  E-value=0.019  Score=43.28  Aligned_cols=62  Identities=26%  Similarity=0.409  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++..++..+..+|++++|+.++++++..    .| .++   ..++.+|.++...|++++|.+.+++++.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL----DP-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc----CC-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4567888999999999999999988764    22 222   67889999999999999999999999875

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.65  E-value=0.0046  Score=39.08  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      .+.+||.+|..+|++++|+++|++|+.+-..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4789999999999999999999999976544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.64  E-value=0.025  Score=55.29  Aligned_cols=111  Identities=15%  Similarity=0.081  Sum_probs=89.3

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  398 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L  398 (456)
                      .-.|+++.|++.|++.+.+... +|.. ..-+++-+.|++.|.-..+++.|+.|.++-|.|.+.+  .+-.--+..++.|
T Consensus       246 iflg~fe~A~ehYK~tl~LAie-lg~r-~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSL  321 (639)
T KOG1130|consen  246 IFLGNFELAIEHYKLTLNLAIE-LGNR-TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSL  321 (639)
T ss_pred             hhhcccHhHHHHHHHHHHHHHH-hcch-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHH
Confidence            3458899999999998876543 3432 2346777899999999999999999999999998765  3445567899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772          399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  433 (456)
Q Consensus       399 a~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~  433 (456)
                      |..+..+|..++|+.+.++++++-....-+.-..|
T Consensus       322 gna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT  356 (639)
T KOG1130|consen  322 GNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT  356 (639)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence            99999999999999999999999888754443333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.039  Score=56.35  Aligned_cols=105  Identities=11%  Similarity=0.072  Sum_probs=78.1

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHH-----------------------HHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKL-----------------------QKKLYHPFSVNLMQTREKLIKILMELEDWKEALA  371 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~  371 (456)
                      |..++..|+|++|.++|+.+.+-                       ..+.....--...+..+|.+.+++..|+|.+|++
T Consensus       117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e  196 (652)
T KOG2376|consen  117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIE  196 (652)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence            44566778889998888877321                       0111222223377888999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772          372 YCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       372 ~~~~~l~~~e~~~g~~h-------p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      ..++++.+.++-+-.+.       -.++..-.+|+.++..+|+.+||...|...+
T Consensus       197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            99999988766554221       4577788899999999999999998876544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.61  E-value=0.018  Score=63.34  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...|..+..+|++++|++.++++++.     -|.++   .+...++.++...|++++|+.++++++..     .|+++. 
T Consensus        53 ~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~---~a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~-  118 (765)
T PRK10049         53 AAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND---DYQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN-  118 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-
Confidence            44556677889999999999988754     35553   34468888999999999999999988753     234433 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                         ++.+|.++...|++++|+..+++|+++
T Consensus       119 ---~~~la~~l~~~g~~~~Al~~l~~al~~  145 (765)
T PRK10049        119 ---LLALAYVYKRAGRHWDELRAMTQALPR  145 (765)
T ss_pred             ---HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence               778899999999999999999998884

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.59  E-value=0.0081  Score=43.76  Aligned_cols=52  Identities=13%  Similarity=0.148  Sum_probs=41.9

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  378 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  378 (456)
                      ..+|++++|++.+++++..     .|++   ..++..++.+|...|++++|..++.+++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR-----NPDN---PEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH-----TTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hhccCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3578999999999998754     3444   56667899999999999999999998774

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.57  E-value=0.02  Score=55.44  Aligned_cols=66  Identities=14%  Similarity=0.046  Sum_probs=58.1

Q ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       348 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .....+..++.+|..+|++++|+..+++++..        .|.....++++|.++..+|++++|+..+++|+++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  127 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL  127 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45677889999999999999999999999863        3445678999999999999999999999999875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.57  E-value=0.031  Score=61.54  Aligned_cols=97  Identities=11%  Similarity=-0.066  Sum_probs=73.9

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHh--------hcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKK--------LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~--------~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      .+.++|++++|+..++++......        .-.|+ .....+...++.++...|++++|++.+++++..        .
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~-~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~  389 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN-DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------A  389 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            345789999999988887654210        01122 234566778999999999999999999988754        3


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      |.-...++.+|.++...|++++|++.|++|+++.
T Consensus       390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            3334688999999999999999999999999864

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.53  E-value=0.024  Score=51.39  Aligned_cols=93  Identities=11%  Similarity=0.085  Sum_probs=67.0

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  400 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  400 (456)
                      .++.++++..+++.++.     .|+|   ...+..|+.+|..+|++++|+..+++++.+        .|.-+..+..+|.
T Consensus        52 ~~~~~~~i~~l~~~L~~-----~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~  115 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT  115 (198)
T ss_pred             chhHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            34555666555555432     3444   668889999999999999999999999853        2444566788898


Q ss_pred             HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          401 LE-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       401 ~~-~~~g~--~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                      ++ ...|+  +++|...+++|++.     .|+++...
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~-----dP~~~~al  147 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALAL-----DANEVTAL  147 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHh-----CCCChhHH
Confidence            64 66777  59999999999874     45555443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.53  E-value=0.2  Score=40.62  Aligned_cols=113  Identities=16%  Similarity=0.168  Sum_probs=78.6

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC---cc--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS---VN--LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h---~~--~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ++.+-...|-|++|..-++++.++.+++ +|..   +.  =+-.+..|+.++..+|+|++++.-..++|.-+.+ -|.-|
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srti-P~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR-RGEL~   92 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTI-PAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR-RGELH   92 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS--TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-H--TT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccC-ChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh-ccccc
Confidence            3444445688999999999998876544 3332   11  2334567888999999999999999999986664 57777


Q ss_pred             hHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772          389 PLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  428 (456)
Q Consensus       389 p~~~~~l----~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~  428 (456)
                      -+-|..+    ++-|..+...|+.+||.+.|+.|-+++...-|.
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            7766543    445777778999999999999999998877664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.42  E-value=0.012  Score=56.20  Aligned_cols=101  Identities=17%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..|..+...|++++|++.++++++.     .|+|+.+   +..++.+++..|+.+++.+.........     +.+|.  
T Consensus       151 ~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~---~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~--  215 (280)
T PF13429_consen  151 ALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDA---RNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD--  215 (280)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHH---HHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH--
Confidence            3455566789999999999999864     4666554   4568888999999998777766554432     34443  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                       .+..+|.++..+|++++|+.+|++++.     ..|++|.+.
T Consensus       216 -~~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~  251 (280)
T PF13429_consen  216 -LWDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWL  251 (280)
T ss_dssp             -HCHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHH
T ss_pred             -HHHHHHHHhcccccccccccccccccc-----ccccccccc
Confidence             356779999999999999999999775     345666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.41  E-value=0.0082  Score=37.14  Aligned_cols=31  Identities=32%  Similarity=0.493  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      +..++++|.++..+|++++|+..+++|+++-
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            4578999999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR00540 hemY_coli hemY protein

Probab=96.41  E-value=0.03  Score=56.86  Aligned_cols=90  Identities=10%  Similarity=-0.026  Sum_probs=61.5

Q ss_pred             CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012772          322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  401 (456)
Q Consensus       322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~  401 (456)
                      ++.+.+++..++.++     .+|+++. ...+..++.++..+|+|++|.++++++...-      .+|.--. +..||.+
T Consensus       313 ~~~~~~~~~~e~~lk-----~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------~~p~~~~-~~~La~l  379 (409)
T TIGR00540       313 EDNEKLEKLIEKQAK-----NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACK------EQLDAND-LAMAADA  379 (409)
T ss_pred             CChHHHHHHHHHHHH-----hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------cCCCHHH-HHHHHHH
Confidence            344444444444432     3567765 5677889999999999999999988533221      1333222 3378999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHH
Q 012772          402 EWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       402 ~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      +..+|+.++|.+++++++..+-.
T Consensus       380 l~~~g~~~~A~~~~~~~l~~~~~  402 (409)
T TIGR00540       380 FDQAGDKAEAAAMRQDSLGLMLA  402 (409)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999876654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.39  E-value=0.028  Score=61.73  Aligned_cols=60  Identities=20%  Similarity=0.127  Sum_probs=31.7

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ..++.+|..+|+|++|++++++++.    ..|.+ |.   .+..|+.++...|+.++|++.++++...
T Consensus       106 lalA~ly~~~gdyd~Aiely~kaL~----~dP~n-~~---~l~gLa~~y~~~~q~~eAl~~l~~l~~~  165 (822)
T PRK14574        106 ASAARAYRNEKRWDQALALWQSSLK----KDPTN-PD---LISGMIMTQADAGRGGVVLKQATELAER  165 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-HH---HHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence            3445556666666666666666553    12222 32   2234566666666666666666555443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.36  E-value=0.029  Score=60.36  Aligned_cols=99  Identities=12%  Similarity=0.020  Sum_probs=77.2

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      +-.|..++..|+|..+..+...++...     .+.+...+..+.+|..|..+|+|++|-.||.+++..-     ++|  .
T Consensus       274 ~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~  341 (1018)
T KOG2002|consen  274 NHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--F  341 (1018)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--c
Confidence            345566778889988888877765432     2345567889999999999999999999999887531     222  5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      ...++.||+.|.+.|++++|...+++.+..+
T Consensus       342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~  372 (1018)
T KOG2002|consen  342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL  372 (1018)
T ss_pred             cccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence            6678899999999999999999998877654

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=96.35  E-value=0.0052  Score=42.28  Aligned_cols=45  Identities=22%  Similarity=0.491  Sum_probs=37.5

Q ss_pred             CcCcCCC---CCCccCcCCCCcccccHHhhhhcHHHhHHhchhhHhch
Q 012772           30 CDGCFAS---SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLD   74 (456)
Q Consensus        30 C~~C~~~---~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~~l~   74 (456)
                      |..|...   ...+.|+.|+++.|||++=...|...|+--|..|+...
T Consensus         2 Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRqvN   49 (55)
T PF13824_consen    2 CPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQVN   49 (55)
T ss_pred             CCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHHhc
Confidence            6677664   23578999999999999999888889999999998754

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.34  E-value=0.014  Score=50.16  Aligned_cols=74  Identities=18%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  426 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~  426 (456)
                      ...++..+.++..+...|++++|..+++-+..        ..|....-+++||.++..+|++++|+..|.+|..+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            56788889999999999999999999987653        56777888999999999999999999999999875     


Q ss_pred             CCCCchH
Q 012772          427 GTNSPFM  433 (456)
Q Consensus       427 G~~h~~~  433 (456)
                      .+++|..
T Consensus        99 ~~ddp~~  105 (157)
T PRK15363         99 KIDAPQA  105 (157)
T ss_pred             CCCCchH
Confidence            4566544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.32  E-value=0.0097  Score=36.65  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      +..++.+|.++..+|++++|++.+++|+++-
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            3578999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.13  Score=52.76  Aligned_cols=126  Identities=19%  Similarity=0.156  Sum_probs=88.1

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP--------------  378 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~--------------  378 (456)
                      ++|=-.+..++.++|+..++.        +.+...   .++.--++++.++|+|++|++.|+.++.              
T Consensus        84 EKAYc~Yrlnk~Dealk~~~~--------~~~~~~---~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl  152 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLKG--------LDRLDD---KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL  152 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHhc--------ccccch---HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            444445566777777765441        222222   2344457788889999999998886621              


Q ss_pred             --------H-HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          379 --------V-YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       379 --------~-~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                              + .....|..--..=..+||.|-++...|+|.+|++.|++|+.|-..++-.+..--.++...|+-++-.+-|
T Consensus       153 ~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay  232 (652)
T KOG2376|consen  153 LAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY  232 (652)
T ss_pred             HHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence                    1 1223333333355689999999999999999999999999999998877776667777888887777666

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.29  E-value=0.0076  Score=62.06  Aligned_cols=86  Identities=19%  Similarity=0.166  Sum_probs=60.5

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  399 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La  399 (456)
                      -|++++.|++.+++++.+        ++....++.-++.-+....+|+.|..+++++|.+        .|.-=.++|.||
T Consensus       433 LQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG  496 (638)
T KOG1126|consen  433 LQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLG  496 (638)
T ss_pred             hhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhh
Confidence            367788888888777643        3334555666777777778888888888877743        333345677788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Q 012772          400 KLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       400 ~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .+|.++++++.|+-+|++|++|
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~I  518 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEI  518 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcC
Confidence            8888888888888777777765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.29  E-value=0.011  Score=37.33  Aligned_cols=31  Identities=16%  Similarity=0.348  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQR  382 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~  382 (456)
                      ++.+|+.+|..+|+|++|+++++++|.+.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999999876553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.03  Score=55.99  Aligned_cols=102  Identities=22%  Similarity=0.225  Sum_probs=74.5

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      |..+.+|++|++|++.|..++++. ...|-.+...+-..+....+..=.+++.+|+.+++++++        -.|.--..
T Consensus       469 AeiLtDqqqFd~A~k~YD~ai~LE-~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--------~Dpkce~A  539 (606)
T KOG0547|consen  469 AEILTDQQQFDKAVKQYDKAIELE-PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--------LDPKCEQA  539 (606)
T ss_pred             HHHHhhHHhHHHHHHHHHHHHhhc-cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--------cCchHHHH
Confidence            344678899999999999998764 333333333333333333333334899999999999985        46667788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      +-.||++...+|+.++|+++++++...-+..
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            8999999999999999999999998765543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.17  E-value=0.074  Score=50.93  Aligned_cols=113  Identities=16%  Similarity=0.134  Sum_probs=83.4

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHh--cCCCC----hHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRV--YPQFH----PLLG  392 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~e~~--~g~~h----p~~~  392 (456)
                      .+|+++.|..++.++........+..-..+.+..+++|.-....+ ++++|..+.++++++.+..  ....|    ....
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            578999999999999776542223333458888899999999999 9999999999999997652  11333    4567


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                      ..+..|+.++...+..+...+ -.++++.++..+| +||.+.
T Consensus        85 ~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~  124 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH
Confidence            788889999988887654333 5667777777777 465554

It is also involved in sporulation [].

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]

Probab=96.15  E-value=0.0041  Score=61.87  Aligned_cols=39  Identities=28%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             ccccCCCcCCCeeEE--eC------CEEEEEEecCCCCCCcccCChh
Q 012772          220 SIINHSCLPNAVLVF--EG------RLAVVRAVQHVPKGAEGQFDDI  258 (456)
Q Consensus       220 sl~NHSC~PN~~~~f--~~------~~~~vra~~~I~~Gee~~~~~~  258 (456)
                      =++||||.||+.+.+  .+      -++.+-|+++|++|+|+||++-
T Consensus       274 RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg  320 (364)
T KOG1082|consen  274 RFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYG  320 (364)
T ss_pred             ccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhc
Confidence            478999999998864  33      2567889999999999997654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.14  E-value=0.086  Score=41.40  Aligned_cols=83  Identities=16%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             HHHccCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772          360 LMELEDWKEALAYCQLTIPVYQRVYPQF-HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  438 (456)
Q Consensus       360 ~~~~g~~~~A~~~~~~~l~~~e~~~g~~-hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~  438 (456)
                      ....|+|.+|.+...+..+....-.... .-.....+.++|.++...|++++|...+++|+++-+..-  |..-....+.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence            3467999999999999998766554433 234667789999999999999999999999999999863  4445555555


Q ss_pred             HHHHHH
Q 012772          439 KLEEAQ  444 (456)
Q Consensus       439 ~l~~~~  444 (456)
                      -+..+.
T Consensus        86 ~~~~l~   91 (94)
T PF12862_consen   86 WLANLL   91 (94)
T ss_pred             HHHHHh
Confidence            555443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.11  E-value=0.19  Score=46.16  Aligned_cols=106  Identities=9%  Similarity=0.038  Sum_probs=72.9

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      |..+....+|++|...+.++.+-++..-.+  .+-+.++..++.+..++..|.|+.++++++..+|...   ..|+++..
T Consensus        38 AvafRnAk~feKakdcLlkA~~~yEnnrsl--fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~---GspdtAAm  112 (308)
T KOG1585|consen   38 AVAFRNAKKFEKAKDCLLKASKGYENNRSL--FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC---GSPDTAAM  112 (308)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---CCcchHHH
Confidence            344555567888877766666555432222  2257788888889999999999999999999988753   44555543


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      -.+-|-=..+..+.++|+.+|++|+++++..
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            3333333346677788888888888888764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.10  E-value=0.31  Score=40.38  Aligned_cols=120  Identities=17%  Similarity=0.128  Sum_probs=88.3

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      ++..+-+.|+.+.|++.|.+++.+.     |   ....++++-++++.-+|+-++|++-..+++++    -|+-....-.
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~-----P---~raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~trtacq  116 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLA-----P---ERASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQTRTACQ  116 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhc-----c---cchHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCccchHHHH
Confidence            4444556799999999999988653     2   34678899999999999999999999998863    4555555556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCCchHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~----~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      .+..=|.+|..+|+.+.|..-++.|-++=..    -+=.=+|+..---.||+++-.
T Consensus       117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~  172 (175)
T KOG4555|consen  117 AFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFD  172 (175)
T ss_pred             HHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            7788899999999999999999988764211    011124555555566666543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.086  Score=51.74  Aligned_cols=99  Identities=12%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      +.+.....+|++..|.+.|..++.+     .|+|.. .+.++.+.+.+...+|+..+|+.-|..++.+        .+..
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~sy  320 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSY  320 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHH
Confidence            3445566789999999999988764     466655 6778899999999999999999999999864        5677


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      ...|..=|..+..++++++|+..|++|++.-.-
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            778888899999999999999999999986543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.08  E-value=0.037  Score=51.05  Aligned_cols=87  Identities=22%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      ....|++.+|+..++++..     +.|++   .++++.++.+|.+.|++++|..-+.+++++    .| ..|   ..++|
T Consensus       110 ~~~~g~~~~A~~~~rkA~~-----l~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L----~~-~~p---~~~nN  173 (257)
T COG5010         110 QIRNGNFGEAVSVLRKAAR-----LAPTD---WEAWNLLGAALDQLGRFDEARRAYRQALEL----AP-NEP---SIANN  173 (257)
T ss_pred             HHHhcchHHHHHHHHHHhc-----cCCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHh----cc-CCc---hhhhh
Confidence            3457999999998888754     33444   566788999999999999999999999874    22 333   35789


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      ||..+.-.|+++.|++++.+|..
T Consensus       174 lgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         174 LGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999998753

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.07  Score=53.10  Aligned_cols=85  Identities=16%  Similarity=0.105  Sum_probs=47.4

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  399 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La  399 (456)
                      +-.+...|++.|++++++.        |.=.++.+.||++|.-++...-|+-|+++++..     -|+.+   ..+..||
T Consensus       376 EmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDs---Rlw~aLG  439 (559)
T KOG1155|consen  376 EMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDS---RLWVALG  439 (559)
T ss_pred             HhcccHHHHHHHHHHHhcC--------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCch---HHHHHHH
Confidence            3445567777777776542        222455566666666666666666666655531     12222   2344556


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH
Q 012772          400 KLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       400 ~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      ..|..+++.++|++.|.+|+.
T Consensus       440 ~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  440 ECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             HHHHHhccHHHHHHHHHHHHh
Confidence            666666666666666666654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.04  E-value=0.063  Score=51.08  Aligned_cols=95  Identities=11%  Similarity=0.029  Sum_probs=73.5

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      +.|..+....+++.|...+++++..        ++.-+++-..++.+....|+|+.|++..++++.       .++-.++
T Consensus       185 ELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~yl~  249 (389)
T COG2956         185 ELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE-------QNPEYLS  249 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHHHH
Confidence            3444455556778888887777642        455566667789999999999998887666554       5778888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      ..+..|...|..+|+.++++..|.++.+..
T Consensus       250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         250 EVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            899999999999999999999999887653

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.02  E-value=0.017  Score=35.67  Aligned_cols=32  Identities=34%  Similarity=0.490  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      +..++.+|.++..+|++++|.++|++|+++-.
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            35789999999999999999999999998753

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.97  E-value=0.033  Score=55.73  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=53.8

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      ...+..+...|+|++|+..|++++++     .|++.....++++++.+|..+|++++|++.+++++++
T Consensus        79 ~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         79 VNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34455677889999999999999864     4777666577899999999999999999999999997

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.93  E-value=0.03  Score=55.29  Aligned_cols=74  Identities=11%  Similarity=0.008  Sum_probs=62.7

Q ss_pred             cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ..+.++........++.++..+|++++|+..+++++..    - +.+   ...+..+|.++...|++++|+.+++++++.
T Consensus       106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~-p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----N-PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C-CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            56778888888888999999999999999999999874    2 222   567888999999999999999999999886


Q ss_pred             HH
Q 012772          422 LR  423 (456)
Q Consensus       422 ~~  423 (456)
                      ..
T Consensus       178 ~~  179 (355)
T cd05804         178 WD  179 (355)
T ss_pred             cC
Confidence            54

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.88  E-value=0.12  Score=51.84  Aligned_cols=91  Identities=16%  Similarity=0.147  Sum_probs=68.3

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..|.....-|++++|+..+..+++     -.|+|+.+..   ..+.++++.++..+|.+.+++++..    +    |...
T Consensus       311 G~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~---~~~~i~~~~nk~~~A~e~~~kal~l----~----P~~~  374 (484)
T COG4783         311 GRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLE---LAGDILLEANKAKEAIERLKKALAL----D----PNSP  374 (484)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHhc----C----CCcc
Confidence            445555566778888777666543     3578877765   4678899999999999999999853    2    3335


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      ..-.++|.++++.|+..+|+..|.+.+
T Consensus       375 ~l~~~~a~all~~g~~~eai~~L~~~~  401 (484)
T COG4783         375 LLQLNLAQALLKGGKPQEAIRILNRYL  401 (484)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence            667788999999999998887777654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.86  E-value=0.13  Score=55.03  Aligned_cols=98  Identities=18%  Similarity=0.125  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      ++..++.+|..+..+|++++|++++..+++.        +|.-..++..||.+|-++|+.++|+.....+-.    +-|.
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~  205 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPK  205 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCC
Confidence            4666777788888889999999998888653        223345666777777777777776666443321    2222


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      ++    -.+..+|.....+|++++|.-+|.||+.
T Consensus       206 d~----e~W~~ladls~~~~~i~qA~~cy~rAI~  235 (895)
T KOG2076|consen  206 DY----ELWKRLADLSEQLGNINQARYCYSRAIQ  235 (895)
T ss_pred             Ch----HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            33    3355555555566666666666666554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.80  E-value=0.023  Score=54.34  Aligned_cols=94  Identities=21%  Similarity=0.283  Sum_probs=51.7

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+...|+++++.++++......     |.++.+   ...++.+|..+|++++|+.++++++.     ..+.+|   .
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~---~  249 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDP---L  249 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-H---H
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhcccccccccccccccccc-----cccccc---c
Confidence            3445667888888777666654332     566654   35789999999999999999999773     234444   4


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      .+..+|.++...|+.++|..++++|+.-+.
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~  279 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQALRLLR  279 (280)
T ss_dssp             HHHHHHHHHT--------------------
T ss_pred             cccccccccccccccccccccccccccccC
Confidence            567889999999999999999999987654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.21  Score=49.86  Aligned_cols=103  Identities=17%  Similarity=0.039  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 012772          326 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL  405 (456)
Q Consensus       326 ~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~  405 (456)
                      =|+-.++++.     .+-|+++.   ++..||+.|.++++.++|+..+.+++..     |..   -+..|+.||++|-++
T Consensus       416 YaLyYfqkA~-----~~kPnDsR---lw~aLG~CY~kl~~~~eAiKCykrai~~-----~dt---e~~~l~~LakLye~l  479 (559)
T KOG1155|consen  416 YALYYFQKAL-----ELKPNDSR---LWVALGECYEKLNRLEEAIKCYKRAILL-----GDT---EGSALVRLAKLYEEL  479 (559)
T ss_pred             HHHHHHHHHH-----hcCCCchH---HHHHHHHHHHHhccHHHHHHHHHHHHhc-----ccc---chHHHHHHHHHHHHH
Confidence            3344455553     35677754   4567999999999999999999998753     222   578999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          406 GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       406 g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      +++++|..+|++-++.. ..-|...|.+.....-|+.-..
T Consensus       480 ~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~  518 (559)
T KOG1155|consen  480 KDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFK  518 (559)
T ss_pred             HhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHH
Confidence            99999999999999988 4457777777776666665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.75  E-value=0.14  Score=48.00  Aligned_cols=86  Identities=12%  Similarity=0.082  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  428 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~  428 (456)
                      ........+..+...|+|++|++.+++++.    .+| ..|......+.||.++..++++++|+..+++.++.     =|
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P  100 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP  100 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence            344556777888889999999999998876    454 45888888999999999999999999999998764     37


Q ss_pred             CCchHHHHHHHHHHHH
Q 012772          429 NSPFMKELILKLEEAQ  444 (456)
Q Consensus       429 ~h~~~~~~~~~l~~~~  444 (456)
                      +||.+..++.+++.+.
T Consensus       101 ~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866        101 THPNIDYVLYMRGLTN  116 (243)
T ss_pred             CCCchHHHHHHHHHhh
Confidence            8888888888877654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.73  E-value=0.017  Score=44.17  Aligned_cols=50  Identities=16%  Similarity=0.311  Sum_probs=40.4

Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772          362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  417 (456)
                      ++|+|++|+.++++++.....     .+ -...++.||.++..+|++++|...+++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            368999999999999875432     33 455777799999999999999999988

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.69  E-value=0.21  Score=49.54  Aligned_cols=54  Identities=15%  Similarity=0.139  Sum_probs=44.2

Q ss_pred             ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          363 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       363 ~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      .|++++|.++++.+|.        +...-...++++|..+-.+|++++|++.+-+-..|+..
T Consensus       503 ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n  556 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN  556 (840)
T ss_pred             cCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence            4788888888887773        55666778999999999999999999999888777754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.62  E-value=0.058  Score=53.62  Aligned_cols=60  Identities=20%  Similarity=0.221  Sum_probs=50.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...|..+...|+|++|++++.+++..        .|.-...++++|.++..+|++++|+..+++|+++
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l   65 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL   65 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567778889999999999999863        3334567899999999999999999999999986

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.19  Score=49.46  Aligned_cols=134  Identities=18%  Similarity=0.237  Sum_probs=95.5

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------Hhc
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RVY  384 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e------~~~  384 (456)
                      ++=+...+..-|+.++|+-.|+.+..+        -|..++++..|...|...|.+.+|......++..+.      +++
T Consensus       337 lilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  337 LILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             HHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            333444455667888888777777543        234678899999999999999999988876655442      233


Q ss_pred             C----------------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 012772          385 P----------------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  442 (456)
Q Consensus       385 g----------------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~  442 (456)
                      |                      .-.|...-..+.+|.++...|++++++++|++++.++.-.-  =|....+++....+
T Consensus       409 g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~--LH~~Lgd~~~A~Ne  486 (564)
T KOG1174|consen  409 GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN--LHNHLGDIMRAQNE  486 (564)
T ss_pred             cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH--HHHHHHHHHHHhhh
Confidence            3                      12466666677788889999999999999999999876542  35556666666666


Q ss_pred             HHHHHHhhhccC
Q 012772          443 AQAEASYKLSSK  454 (456)
Q Consensus       443 ~~~e~~~~~~~~  454 (456)
                      .+..++|+++++
T Consensus       487 ~Q~am~~y~~AL  498 (564)
T KOG1174|consen  487 PQKAMEYYYKAL  498 (564)
T ss_pred             HHHHHHHHHHHH
Confidence            677777777653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.60  E-value=0.092  Score=49.01  Aligned_cols=89  Identities=21%  Similarity=0.121  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772          353 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  432 (456)
Q Consensus       353 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~  432 (456)
                      .++.+.-+...|+|.+|..-++.-+.-     .|..+.++..+|.||.++..+|++++|...|..+..    .| |+||-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k----~~-P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK----DY-PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH----hC-CCCCC
Confidence            456666677889999999998877643     368889999999999999999999999999988877    44 47888


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 012772          433 MKELILKLEEAQAEASYKL  451 (456)
Q Consensus       433 ~~~~~~~l~~~~~e~~~~~  451 (456)
                      .-+.+.+|+.+..++-+..
T Consensus       214 ApdallKlg~~~~~l~~~d  232 (262)
T COG1729         214 APDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHH
Confidence            8899999999887776543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.58  E-value=0.056  Score=51.73  Aligned_cols=95  Identities=13%  Similarity=0.127  Sum_probs=68.9

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      +-+....|..||+|++|++.|.+...     +.|.|+.+.   .+-+.+|.++..|..|..-|..++.+-+..       
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~~---~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-------  164 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVYH---INRALAYLKQKSFAQAEEDCEAAIALDKLY-------  164 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccch---hhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-------
Confidence            45677788999999999999988764     456666543   456778999999999999999998764432       


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                       .-.|..=|.+...+|+..||.+-++.+|++
T Consensus       165 -~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  165 -VKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             -HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence             223333455555667777777777777653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.51  E-value=0.19  Score=48.58  Aligned_cols=119  Identities=13%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc-CCCC-hHHHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQFH-PLLGLQYYTC  398 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~-g~~h-p~~~~~l~~L  398 (456)
                      -+.++++++.++.+.++....  .+-..=+++.-.|+.++..+.|+++|+-|..+++++...+- +..| -..+..++.|
T Consensus       135 ls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm  212 (518)
T KOG1941|consen  135 LSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM  212 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence            356778888888887654322  11122356677899999999999999999999999988653 4554 5678899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       399 a~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      +..+..+|.+..|.++-++|.++--. +| |-+....-+..++++
T Consensus       213 aValR~~G~LgdA~e~C~Ea~klal~-~G-dra~~arc~~~~aDI  255 (518)
T KOG1941|consen  213 AVALRLLGRLGDAMECCEEAMKLALQ-HG-DRALQARCLLCFADI  255 (518)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHH-hC-ChHHHHHHHHHHHHH
Confidence            99999999999999999999987655 56 334444444444444

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]

Probab=95.48  E-value=0.0076  Score=64.81  Aligned_cols=41  Identities=34%  Similarity=0.519  Sum_probs=33.3

Q ss_pred             ccccCCCcCCCeeE---EeC-CEEEEEEecCCCCCCcccCChhhH
Q 012772          220 SIINHSCLPNAVLV---FEG-RLAVVRAVQHVPKGAEGQFDDIQE  260 (456)
Q Consensus       220 sl~NHSC~PN~~~~---f~~-~~~~vra~~~I~~Gee~~~~~~r~  260 (456)
                      -.+||||.|||-..   .+| -++.|.|.+||++|||++|++.+.
T Consensus      1252 RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred             cccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence            35799999999654   344 468899999999999999987644

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.45  E-value=0.21  Score=37.31  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=54.6

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV  383 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~  383 (456)
                      ...+++..+++.+-+.++|+..++++++..     ++.+....++..|+.+|.+.|+|+++++|..+=+++.+..
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el   76 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL   76 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334455556677778889999988887653     2345688999999999999999999999998877776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]

Probab=95.44  E-value=0.004  Score=65.06  Aligned_cols=60  Identities=27%  Similarity=0.413  Sum_probs=38.2

Q ss_pred             cccccCCCcCCCee--EEeCC------EEEEEEecCCCCCCcccCChhh-HHHhh-CCccccCC--CCCCCc
Q 012772          219 ISIINHSCLPNAVL--VFEGR------LAVVRAVQHVPKGAEGQFDDIQ-ESAIL-EGYRCKDD--GCSGFL  278 (456)
Q Consensus       219 ~sl~NHSC~PN~~~--~f~~~------~~~vra~~~I~~Gee~~~~~~r-~~~l~-~~f~C~C~--~C~~~~  278 (456)
                      +-++||||+||..+  +|.++      .+.+-|.+-|++|.|+|.++.- ++..- ....|.|-  .|.|.+
T Consensus      1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred             hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhhccc
Confidence            35789999999987  46543      3455678889999999944321 22222 24567664  465543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=95.40  E-value=0.13  Score=55.14  Aligned_cols=91  Identities=21%  Similarity=0.170  Sum_probs=68.0

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ..+.|..+...|++.+|+.++-.+...      |... ..-++..+|..|..+|.+++|++++.++|.     .-|+|.+
T Consensus       417 ~~d~a~al~~~~~~~~Al~~l~~i~~~------~~~~-~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-----~~p~~~D  484 (895)
T KOG2076|consen  417 YLDLADALTNIGKYKEALRLLSPITNR------EGYQ-NAFVWYKLARCYMELGEYEEAIEFYEKVLI-----LAPDNLD  484 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhcC------cccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCchh
Confidence            456777888999999999987766431      1111 267788999999999999999999999984     3345544


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMT  416 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~  416 (456)
                         ....|+.++..+|+.++|.+.++
T Consensus       485 ---~Ri~Lasl~~~~g~~EkalEtL~  507 (895)
T KOG2076|consen  485 ---ARITLASLYQQLGNHEKALETLE  507 (895)
T ss_pred             ---hhhhHHHHHHhcCCHHHHHHHHh
Confidence               56678889999999985544443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.40  E-value=0.14  Score=51.71  Aligned_cols=98  Identities=5%  Similarity=-0.026  Sum_probs=71.9

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---------------
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------  379 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------  379 (456)
                      +..+..+|++++|+..++++.+     ..|+|+.   ++..++.+|...|+|++|++.+.++...               
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~-----~~P~~~~---al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a  231 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLE-----VAPRHPE---VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA  231 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh-----cCCCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3345568999999998887754     4577764   4556789999999999999666555421               


Q ss_pred             H----H---------------HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          380 Y----Q---------------RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       380 ~----e---------------~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      +    .               +-+|..+|........+|..+...|+.++|.+.++++++
T Consensus       232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            0    0               123444555666777889999999999999999998876

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.37  E-value=0.35  Score=43.86  Aligned_cols=86  Identities=16%  Similarity=0.079  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  429 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~  429 (456)
                      .+.+...|..+...|+|.+|++.+++++..     -|.+|......+.+|.++...|++++|+..+++-++    .| |+
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~----~y-P~   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK----LY-PN   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----H--TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HC-CC
Confidence            456678888899999999999999988754     257888999999999999999999999988887664    22 67


Q ss_pred             CchHHHHHHHHHHHHH
Q 012772          430 SPFMKELILKLEEAQA  445 (456)
Q Consensus       430 h~~~~~~~~~l~~~~~  445 (456)
                      ||.+...+.+++.+.-
T Consensus        75 ~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   75 SPKADYALYMLGLSYY   90 (203)
T ss_dssp             -TTHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHH
Confidence            8888888777776643

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.28  E-value=0.48  Score=42.09  Aligned_cols=97  Identities=12%  Similarity=0.008  Sum_probs=69.7

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ++.|..+.+.+++++|+..++.++...     .+.....-+...|+.+...+|.+++|+......         .++--.
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---------~~~~w~  158 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTI---------KEESWA  158 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---------ccccHH
Confidence            456677788899999988777665321     112222334467899999999999998874432         244444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      +...---|.++..+|+-++|++.|++|++..
T Consensus       159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         159 AIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            4455555999999999999999999999886

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.28  E-value=0.17  Score=46.67  Aligned_cols=69  Identities=19%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      .+++..|+.+|...|+|++|.-.+++++-+. -..|..|-.+|-.+|.+|.    ..+++-|.++|.+|+++-.
T Consensus       154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGG----AENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhCh
Confidence            4677889999999999999999888877321 1222334444555555554    2357789999999998765

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.23  E-value=0.17  Score=51.16  Aligned_cols=62  Identities=18%  Similarity=0.168  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      .+..++.++...|+|++|.+++++++..        +|.. ..+..||.++..+|+.++|..+|++++...
T Consensus       330 l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            3345566666666666666666665542        2222 113346666666666666666666665543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.45  Score=48.32  Aligned_cols=92  Identities=20%  Similarity=0.202  Sum_probs=76.9

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      ++..+...|+|..|+..|-+++..        +|.-..++.|.+-+|..+|.+..|+.-++..++.        +|...-
T Consensus       364 kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~k  427 (539)
T KOG0548|consen  364 KGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIK  427 (539)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHH
Confidence            444567889999999999887643        2555677889999999999999999999999876        888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .+..-|.++..+.+|++|++.|++|++.
T Consensus       428 gy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888899999999999999999988764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.21  Score=45.69  Aligned_cols=92  Identities=15%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      ++....+|..|+..|-+++.+        +|..+..+.+=+..+.++.+|+.+..-|++++.        ..|..+...+
T Consensus        19 k~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--------l~~N~vk~h~   82 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--------LDPNLVKAHY   82 (284)
T ss_pred             cccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--------cChHHHHHHH
Confidence            344445788999988877643        444455566777889999999999999999986        4678889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          397 TCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       397 ~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      .||...+....+.+|++.|++|...+..
T Consensus        83 flg~~~l~s~~~~eaI~~Lqra~sl~r~  110 (284)
T KOG4642|consen   83 FLGQWLLQSKGYDEAIKVLQRAYSLLRE  110 (284)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence            9999999999999999999999887664

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.09  E-value=0.11  Score=38.22  Aligned_cols=63  Identities=14%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      .+..++++++|++.+++++.+     +|.+   ...+...|.++..+|+|.+|.+.+.+++..     .|+++...
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~-----~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~   66 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALEL-----DPDD---PELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDPDAR   66 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHh-----Cccc---chhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcHHHH
Confidence            355688999999999888754     4444   455677899999999999999999999843     34555543

>TIGR00540 hemY_coli hemY protein

Probab=95.01  E-value=1.3  Score=44.91  Aligned_cols=21  Identities=10%  Similarity=-0.151  Sum_probs=10.3

Q ss_pred             HHHHHHHccCHHHHHHHHHHH
Q 012772          356 LIKILMELEDWKEALAYCQLT  376 (456)
Q Consensus       356 L~~~~~~~g~~~~A~~~~~~~  376 (456)
                      .+.++..+|++++|.+++.++
T Consensus       124 aA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540       124 AAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            344444555555555555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.98  E-value=0.094  Score=54.66  Aligned_cols=68  Identities=19%  Similarity=0.074  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  429 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~  429 (456)
                      ..++..++......|++++|..++++++.+-        |. +..+..+|+++...|+.++|...|++|+.     +.|.
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~  485 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPG  485 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCC
Confidence            4667777777888899999999999998753        43 67899999999999999999999999976     3455


Q ss_pred             Cc
Q 012772          430 SP  431 (456)
Q Consensus       430 h~  431 (456)
                      +|
T Consensus       486 ~p  487 (517)
T PRK10153        486 EN  487 (517)
T ss_pred             Cc
Confidence            55

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.94  E-value=0.068  Score=32.88  Aligned_cols=29  Identities=28%  Similarity=0.427  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      +++.++|.+|..+|++++|+.++++++.+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            56789999999999999999999999976

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.90  E-value=0.25  Score=49.05  Aligned_cols=100  Identities=16%  Similarity=0.093  Sum_probs=77.4

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  399 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La  399 (456)
                      ..|++++|.+.|+.++.        ++....+++.+++-.+-.+|++++|++.+.++-.+..        .-+..++++|
T Consensus       502 ~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qia  565 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIA  565 (840)
T ss_pred             ecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHH
Confidence            55778888888877753        5666788999999999999999999999988776654        2366788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          400 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       400 ~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      .+|-.+.+-.+|+++|-+|..+     =|+.|.+.   .+|+++
T Consensus       566 niye~led~aqaie~~~q~~sl-----ip~dp~il---skl~dl  601 (840)
T KOG2003|consen  566 NIYELLEDPAQAIELLMQANSL-----IPNDPAIL---SKLADL  601 (840)
T ss_pred             HHHHHhhCHHHHHHHHHHhccc-----CCCCHHHH---HHHHHH
Confidence            9999999999999999887653     35666544   444444

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.89  E-value=0.072  Score=34.02  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      +++..||.+....++|++|++=++++|.+.++++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            4677899999999999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.85  E-value=0.069  Score=50.36  Aligned_cols=59  Identities=12%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      .+|..+.+-|.++.|++-++.++.+        ++...+++..|+.+|..+|++++|++.|+++|++
T Consensus       120 NRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  120 NRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence            4666777889999999988888754        6677899999999999999999999999999864

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]

Probab=94.84  E-value=0.023  Score=52.53  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             cccccCCCcCCCeeE---EeC-CEEEEEEecCCCCCCcccCChh
Q 012772          219 ISIINHSCLPNAVLV---FEG-RLAVVRAVQHVPKGAEGQFDDI  258 (456)
Q Consensus       219 ~sl~NHSC~PN~~~~---f~~-~~~~vra~~~I~~Gee~~~~~~  258 (456)
                      +-|+|||=.+|+..-   .+| .++++.|.++|.+|||++|++-
T Consensus       334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYG  377 (392)
T KOG1085|consen  334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYG  377 (392)
T ss_pred             hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcc
Confidence            468999999999654   345 5899999999999999998764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.83  E-value=0.45  Score=37.25  Aligned_cols=81  Identities=14%  Similarity=0.075  Sum_probs=62.1

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  398 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~-h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L  398 (456)
                      ..|++.+|++.+.+..........+. +.....+.-+++.+....|++++|+...++++.+.+..  .+...++..+..+
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~~~   87 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALSWL   87 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHH
Confidence            46899999998888887765544333 22345566789999999999999999999999998865  6677777777777


Q ss_pred             HHHH
Q 012772          399 GKLE  402 (456)
Q Consensus       399 a~~~  402 (456)
                      +.+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            6653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.79  E-value=0.82  Score=47.21  Aligned_cols=123  Identities=16%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ..++.-...+|+.++|++.++++.... ..+..-+   .-....++-.+.-+++|++|.+++.++++       ...=..
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~---~l~~~El~w~~~~~~~w~~A~~~f~~L~~-------~s~WSk  339 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQ-SEWKQLH---HLCYFELAWCHMFQHDWEEAAEYFLRLLK-------ESKWSK  339 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHH---HHHHHHHHHHHHHHchHHHHHHHHHHHHh-------ccccHH
Confidence            346666677899999999999877433 2233322   23456788889999999999999888765       233468


Q ss_pred             HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~-------~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      +...|-.|..+..+|+.       ++|.+++.++-....+.-|+.-|.=.-+..+.+.-..
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~  400 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEK  400 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHh
Confidence            88899999999999998       8999999999999999999888877666666655443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.76  E-value=0.55  Score=45.99  Aligned_cols=70  Identities=19%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .||+++   .+...|+.+|.+.+.|.+|..+++.++..     ++    -+..+..+|.++..+|+.++|....++++..
T Consensus       323 ~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~-----~~----s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         323 QHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKL-----RP----SASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhc-----CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            467777   55567899999999999999999988753     11    2567788999999999999999999999944


Q ss_pred             HH
Q 012772          422 LR  423 (456)
Q Consensus       422 ~~  423 (456)
                      ..
T Consensus       391 ~~  392 (400)
T COG3071         391 TR  392 (400)
T ss_pred             hc
Confidence            43

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.72  E-value=0.23  Score=49.94  Aligned_cols=122  Identities=16%  Similarity=0.162  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      ....+-.+...+...|+|++|++.|..++++.     |+.+.   -+.|.+..|..+|+|++-++.+.++|+        
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epi---FYsNraAcY~~lgd~~~Vied~TkALE--------  177 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPI---FYSNRAACYESLGDWEKVIEDCTKALE--------  177 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCch---hhhhHHHHHHHHhhHHHHHHHHHHHhh--------
Confidence            34455556677888999999999999998754     33322   246888999999999999999999985        


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELILKLEEAQA  445 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h-~~~~~~~~~l~~~~~  445 (456)
                      ..|...-.|+.=|.++-.+|++.+|+.=+ -++-|++---+... |....++.+++.-..
T Consensus       178 l~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka  236 (606)
T KOG0547|consen  178 LNPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQAMKKA  236 (606)
T ss_pred             cCcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence            57888999999999999999998886432 24444444333222 333445555444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.66  E-value=0.48  Score=51.66  Aligned_cols=91  Identities=15%  Similarity=0.012  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcC--
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR-ITHG--  427 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~-~~~G--  427 (456)
                      .++..|+.++...|+++.|....++++.        ..|.....|..|+.+|...|++++|.+++++..+.-. +..|  
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--------~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s  566 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYG--------MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT  566 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhC--------CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCee
Confidence            3455666666666666666665555432        2233344677889999999999999999987665321 1111  


Q ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHh
Q 012772          428 ---------------TNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       428 ---------------~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                                     ..||...+++..|.++..++..
T Consensus       567 ~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~  603 (697)
T PLN03081        567 WIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE  603 (697)
T ss_pred             EEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence                           3599999999999988887765

>PLN03158 methionine aminopeptidase; Provisional

Probab=94.64  E-value=0.024  Score=56.72  Aligned_cols=38  Identities=26%  Similarity=0.743  Sum_probs=30.6

Q ss_pred             CCccCcCcCCCCCCccCcCCCC-------cccccHHhhhhcHHHhH
Q 012772           26 SISRCDGCFASSNLKKCSACQV-------VWYCGSNCQKLDWKLHR   64 (456)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~-------v~yCs~~C~~~~~~~H~   64 (456)
                      ....|..|.+... ..|+.|..       .+|||++|.+.+|+.||
T Consensus         8 ~~~~c~~c~~~a~-l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk   52 (396)
T PLN03158          8 SPLACARCSKPAH-LQCPKCLELKLPREGASFCSQDCFKAAWSSHK   52 (396)
T ss_pred             CcccccCCCCccc-ccCccchhcCCCCCCceeECHHHHHHHHHHHH
Confidence            3566999998744 78998832       68999999999998775

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.35  Score=49.10  Aligned_cols=128  Identities=16%  Similarity=0.170  Sum_probs=85.5

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH---------
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---------  382 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~---------  382 (456)
                      ...|..+...|.+.+.+..+..+++......-..|. +..+...++.+|..+++++.|+.+++++|.-.+.         
T Consensus       261 ~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl-Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~  339 (539)
T KOG0548|consen  261 NNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL-IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKE  339 (539)
T ss_pred             HHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH-HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHH
Confidence            344555666777777766666655543322222222 6666666888999999999999999988765443         


Q ss_pred             ---h------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          383 ---V------YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       383 ---~------~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                         .      .....|..+.....-|.-++..|+|.+|+++|.+|+.--        |.-..++.+.+-|...+.
T Consensus       340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~  406 (539)
T KOG0548|consen  340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLG  406 (539)
T ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHh
Confidence               1      223467777777777888888999999999999976532        445555566655554433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=2.1  Score=39.50  Aligned_cols=106  Identities=19%  Similarity=0.234  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc---CCCCccHH-------HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY---HPFSVNLM-------QTREKLIKILMELEDWKEALAYCQLTI  377 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l---~p~h~~~~-------~~~~~L~~~~~~~g~~~~A~~~~~~~l  377 (456)
                      +..+-++...++.+|+|.+|...|+.++...+...   -|..+...       -++-|..+.+...|+|=++++++..+|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            44555677778889999999999998876544321   23333332       334566677888899999999999888


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          378 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       378 ~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .        -||...-.||.=|+++...-+.+||..=|.++++.
T Consensus       258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            4        57777889999999999999999999999988874

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.53  E-value=0.39  Score=42.56  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      +.+.+.-+...|+.++|++.|.++....   .  ..-..+++.-+++.+.+..|+|.....+..++-...+.  |++--.
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~--~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~  111 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYC---T--SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWER  111 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhc---C--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHH
Confidence            3456666788899999999998876532   2  23346788889999999999999999999999888776  333222


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      ....----|..++.+|+|.+|.+.|-.+...+
T Consensus       112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            22222233555567899999888887775433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.34  E-value=0.11  Score=31.66  Aligned_cols=29  Identities=17%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      .++..++.++..+|+|++|++++++++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            56788999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.32  E-value=0.083  Score=50.35  Aligned_cols=87  Identities=15%  Similarity=0.208  Sum_probs=47.0

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  400 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  400 (456)
                      -+++++|+++|+.+++     +||.|..   +...++.-|..-++-+-|+.||+++|.     .|..+|.   .+.++|.
T Consensus       303 m~~~~~a~~lYk~vlk-----~~~~nvE---aiAcia~~yfY~~~PE~AlryYRRiLq-----mG~~spe---Lf~NigL  366 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLK-----LHPINVE---AIACIAVGYFYDNNPEMALRYYRRILQ-----MGAQSPE---LFCNIGL  366 (478)
T ss_pred             HHhHHHHHHHHHHHHh-----cCCccce---eeeeeeeccccCCChHHHHHHHHHHHH-----hcCCChH---HHhhHHH
Confidence            3455666666666553     3444432   233444555555556666666666553     3444444   2455666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHH
Q 012772          401 LEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       401 ~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      .++..++++-++..+++|+...+
T Consensus       367 CC~yaqQ~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  367 CCLYAQQIDLVLPSFQRALSTAT  389 (478)
T ss_pred             HHHhhcchhhhHHHHHHHHhhcc
Confidence            66666666666666666665444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.29  E-value=0.75  Score=49.95  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=94.5

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      ...|.-.+..|.+.+|...+++++........++.  -.-+.+.++|+.++-.+++++.|.+.|+.++        ..||
T Consensus       456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il--------kehp  527 (1018)
T KOG2002|consen  456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL--------KEHP  527 (1018)
T ss_pred             HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH--------HHCc
Confidence            34455556778999999999999877543333333  1235568999999999999999999999988        4788


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      ..-..+..||......++..+|...+.+++.+-     ..+|....++..+....++
T Consensus       528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-----~~np~arsl~G~~~l~k~~  579 (1018)
T KOG2002|consen  528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-----SSNPNARSLLGNLHLKKSE  579 (1018)
T ss_pred             hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-----cCCcHHHHHHHHHHHhhhh
Confidence            888899999977778899999999999998864     4678888777776665543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.29  E-value=0.74  Score=39.05  Aligned_cols=78  Identities=18%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCC
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFH  388 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-~~h  388 (456)
                      .+...+..+...|++++|+..+++++..     .|.+   -.++..++.+|..+|+..+|++++++....+..-+| .-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-----dP~~---E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps  135 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALAL-----DPYD---EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS  135 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence            3344555567789999999998888753     3444   455678899999999999999999999999988888 555


Q ss_pred             hHHHHHH
Q 012772          389 PLLGLQY  395 (456)
Q Consensus       389 p~~~~~l  395 (456)
                      |.+-..+
T Consensus       136 ~~~~~l~  142 (146)
T PF03704_consen  136 PETRALY  142 (146)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.17  E-value=0.32  Score=46.52  Aligned_cols=77  Identities=22%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             HHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH--hcCCCCchHHHHH
Q 012772          361 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKELI  437 (456)
Q Consensus       361 ~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g-~~~eA~~~l~~Al~i~~~--~~G~~h~~~~~~~  437 (456)
                      ..+|+++.|..++.|+-.......|..--.++..+|+.|+-....+ ++++|...+++|.++++.  ..+..|+...++.
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            4689999999999999887766666777889999999999999999 999999999999999876  2456777665544

It is also involved in sporulation [].

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.13  E-value=0.096  Score=53.42  Aligned_cols=76  Identities=17%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-C--Ch-HHHHHHHH
Q 012772          322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-F--HP-LLGLQYYT  397 (456)
Q Consensus       322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~-~--hp-~~~~~l~~  397 (456)
                      .+..+|++.|.+++.++        |..++++++||..|+.+|.|++|.+|+..+|.+.++-+.. .  ++ ...+....
T Consensus       478 ~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR  549 (579)
T KOG1125|consen  478 NRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR  549 (579)
T ss_pred             cccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence            36789999999998764        3467899999999999999999999999999999886552 2  22 34455555


Q ss_pred             HHHHHHHc
Q 012772          398 CGKLEWFL  405 (456)
Q Consensus       398 La~~~~~~  405 (456)
                      ++.+.+..
T Consensus       550 ~als~~~~  557 (579)
T KOG1125|consen  550 LALSAMNR  557 (579)
T ss_pred             HHHHHcCC
Confidence            55554433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.96  E-value=0.07  Score=53.05  Aligned_cols=72  Identities=7%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             HHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 012772          333 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  404 (456)
Q Consensus       333 ~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~  404 (456)
                      +++-+++++|||.|+++.....--+.+|.++|+++..+++-+-+|++.++.+.|-+|.++..+...|.+...
T Consensus       320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            355578899999999988777677788999999999999999999999999999999999999999887543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.90  E-value=0.11  Score=51.76  Aligned_cols=78  Identities=15%  Similarity=0.109  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          372 YCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       372 ~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      +-.++|-+.++++|+.||++.+....-|-+|..+|+++..+++...|+++.++.+.|-+|.|...+..-++.-.-+..
T Consensus       317 ~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~  394 (615)
T KOG0508|consen  317 MRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQ  394 (615)
T ss_pred             HHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhh
Confidence            345788899999999999999998888999999999999999999999999999999999999988888887665443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=93.83  E-value=0.49  Score=49.83  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=84.7

Q ss_pred             eeeccCCCcCCHHHHHHHHHHHHHHHHHHHhh-----hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 012772          287 FTCQQCGLVRSKEEIKKIASEVNILSKKTLAL-----TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM  361 (456)
Q Consensus       287 ~~C~~C~~~~~~~~~~~~~~~~~~l~~~a~~~-----~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~  361 (456)
                      |-|---.-..++...+++.+-....+..|..+     .++++|+++.+.+++.+++        ++....++..++.+..
T Consensus       459 lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~AL  530 (777)
T KOG1128|consen  459 LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAAL  530 (777)
T ss_pred             hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHH
Confidence            44443333445555555544333444444443     4668899998888877754        5567788899999999


Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      +.+++..|.+.+.+.+.        --|..+-..+||+.+|...|+-.+|...+++|+..-
T Consensus       531 qlek~q~av~aF~rcvt--------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  531 QLEKEQAAVKAFHRCVT--------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHhhhHHHHHHHHHHhh--------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            99999999999887653        345557789999999998888888888887777643

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.83  E-value=0.52  Score=47.26  Aligned_cols=83  Identities=17%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      +...++-.+|+++.++++..     .|.+   ..++...+..+...++++.|++.++++..        ..|.--..++.
T Consensus       210 ~l~~~~E~~AI~ll~~aL~~-----~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--------lsP~~f~~W~~  273 (395)
T PF09295_consen  210 YLLMNEEVEAIRLLNEALKE-----NPQD---SELLNLQAEFLLSKKKYELALEIAKKAVE--------LSPSEFETWYQ  273 (395)
T ss_pred             HHhcCcHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------hCchhHHHHHH
Confidence            33445566777766666521     2333   66677788899999999999999999885        46777888999


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMT  416 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~  416 (456)
                      ||++|..+|++++|+-.+.
T Consensus       274 La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  274 LAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHh
Confidence            9999999999999987665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.62  E-value=0.19  Score=30.75  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVY  380 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  380 (456)
                      +++..++.+|..+|++++|..++++++++-
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            567889999999999999999999999864

...

>PRK15331 chaperone protein SicA; Provisional

Probab=93.62  E-value=0.67  Score=40.14  Aligned_cols=77  Identities=10%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          344 PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       344 p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      --...++...+..|.-+..+|++++|..+++-+.     .|.+..+..   ++.||-++..++++++|+..|..|..+-.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-----~~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~  102 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLC-----IYDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLLK  102 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3455677888888888999999999999988654     355666553   79999999999999999999999988776


Q ss_pred             HhcCC
Q 012772          424 ITHGT  428 (456)
Q Consensus       424 ~~~G~  428 (456)
                      ..++|
T Consensus       103 ~dp~p  107 (165)
T PRK15331        103 NDYRP  107 (165)
T ss_pred             CCCCc
Confidence            55554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=93.60  E-value=0.97  Score=41.91  Aligned_cols=62  Identities=16%  Similarity=0.093  Sum_probs=52.2

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      ..++...+..|+|.+|+...+++..        -.|.=+..++-+|-+|.+.|++++|..-|.+|+++.-
T Consensus       104 ~~~gk~~~~~g~~~~A~~~~rkA~~--------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010         104 AAQGKNQIRNGNFGEAVSVLRKAAR--------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHhc--------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            3478888999999999999998874        2344466788999999999999999999999998753

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.57  E-value=0.15  Score=33.58  Aligned_cols=36  Identities=14%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                      .++.||.+|..+|++++|++.|+++++.     .|+++...
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a~   38 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEAW   38 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHHH
Confidence            5788999999999999999999999983     45665443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.52  E-value=0.21  Score=31.93  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  429 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~  429 (456)
                      ..+..||.+....++|++|..=|++|++|.+..+.++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            4678899999999999999999999999999987653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=93.46  E-value=0.5  Score=52.02  Aligned_cols=64  Identities=13%  Similarity=-0.069  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      ++..||.+|-.+|++++|...++++|..-        |.=+..++++|-.|... ++++|+.++.+|+..+-.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence            67788888888888888888888887542        55566788888888888 888888888888877553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=93.45  E-value=1.6  Score=42.27  Aligned_cols=114  Identities=16%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      -.+....+...|++.+|+..|..+++.        +|....++..-+.+|..+|+-.-|+.-..++|.+        -|+
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpD  104 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPD  104 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------Ccc
Confidence            344455566678889999988887642        4555667788899999999988888888888753        456


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      ....-.+=|.+++.+|++++|+.=+.+.+.     +.|+.-...+...+|+-+..
T Consensus       105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~~e  154 (504)
T KOG0624|consen  105 FMAARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALIQE  154 (504)
T ss_pred             HHHHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhHHH
Confidence            666667778899999999999988887764     44444566666666665543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.43  E-value=0.88  Score=44.22  Aligned_cols=101  Identities=12%  Similarity=0.072  Sum_probs=76.5

Q ss_pred             ChHHHHHHHHHHHHHHHhh-cCCCC-ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772          323 NHQEVVSTYKMIEKLQKKL-YHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  400 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~-l~p~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  400 (456)
                      ++++|+-...++.++-... ++.-| .+..-+++.++.++..+|++..|.++|+++..+.  +-.++-+..+..+.-+|.
T Consensus       177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla--l~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA--LQHGDRALQARCLLCFAD  254 (518)
T ss_pred             hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH--HHhCChHHHHHHHHHHHH
Confidence            4455555555555554332 22222 3345567789999999999999999999987753  334888999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          401 LEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       401 ~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      +|.+.|+.+.|-.-|++|+.+..-.
T Consensus       255 IyR~~gd~e~af~rYe~Am~~m~~~  279 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQAMGTMASL  279 (518)
T ss_pred             HHHhcccHhHHHHHHHHHHHHHhhh
Confidence            9999999999999999999988753

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.30  E-value=5.6  Score=37.83  Aligned_cols=123  Identities=17%  Similarity=0.162  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHH-------------
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL-------------  375 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~-------------  375 (456)
                      +..+.++..+.+.|++.+|..+++.++...     |.+   ..+.-.|+..|...|+.+.|...+..             
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l  206 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL  206 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH
Confidence            334556666778899999999888876532     233   56667788899999888776655432             


Q ss_pred             --HHHHHHHhc--C---------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----------------
Q 012772          376 --TIPVYQRVY--P---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-----------------  425 (456)
Q Consensus       376 --~l~~~e~~~--g---------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~-----------------  425 (456)
                        -++..++.-  |         ...|.-...-+.||+.+...|++++|.+.|-   .|+.+.                 
T Consensus       207 ~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~~~~d~~~Rk~lle~f~  283 (304)
T COG3118         207 QAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL---ALLRRDRGFEDGEARKTLLELFE  283 (304)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhcccccCcHHHHHHHHHHH
Confidence              133333221  1         1245555667889999999999999987764   333332                 


Q ss_pred             -cCCCCchHHHHHHHHHH
Q 012772          426 -HGTNSPFMKELILKLEE  442 (456)
Q Consensus       426 -~G~~h~~~~~~~~~l~~  442 (456)
                       +|+.||.+.....+|..
T Consensus       284 ~~g~~Dp~~~~~RRkL~s  301 (304)
T COG3118         284 AFGPADPLVLAYRRKLYS  301 (304)
T ss_pred             hcCCCCHHHHHHHHHHHH
Confidence             67777766665555543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=93.22  E-value=1.8  Score=47.82  Aligned_cols=98  Identities=9%  Similarity=0.017  Sum_probs=72.6

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHH---hhc----CCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQK---KLY----HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~---~~l----~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      -.+.+++++++|..+.+++..-.-   ..+    ...|+...+....++..+...|++.+|.+..++++.        .-
T Consensus       375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--------~a  446 (822)
T PRK14574        375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--------TA  446 (822)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hC
Confidence            346688999999998888865211   112    256788889999999999999999999999988763        22


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      |.-......+|.++...|+..+|+..+++|+.+
T Consensus       447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l  479 (822)
T PRK14574        447 PANQNLRIALASIYLARDLPRKAEQELKAVESL  479 (822)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence            333445567788888888888888888666554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.18  E-value=2.1  Score=41.21  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=69.5

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  402 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~  402 (456)
                      ++++|..+|+.+..    .+++    ...+++.++.+.+.+|+|++|.+..++++..     .+.+   ...+.+++.+.
T Consensus       182 ~~~~A~y~f~El~~----~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~---~d~LaNliv~~  245 (290)
T PF04733_consen  182 KYQDAFYIFEELSD----KFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPND---PDTLANLIVCS  245 (290)
T ss_dssp             CCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCH---HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh----ccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCC---HHHHHHHHHHH
Confidence            68888888877532    2332    3566788999999999999999998887531     1334   45788999999


Q ss_pred             HHcCCH-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          403 WFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       403 ~~~g~~-~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      ..+|+. +++.+++.+...     .-|+||.+.++..+-+...
T Consensus       246 ~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~~~~~FD  283 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAEKEAEFD  283 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHHHHHHHH
T ss_pred             HHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence            999998 456656655332     3679999998776644443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.10  E-value=0.17  Score=33.31  Aligned_cols=28  Identities=14%  Similarity=0.039  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIP  378 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~  378 (456)
                      .++..++.+|..+|++++|++.+++++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999986

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=93.06  E-value=2  Score=43.34  Aligned_cols=108  Identities=17%  Similarity=0.069  Sum_probs=72.1

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      .+...++..+|++.+++++..     -|+.   .-...+++++|.+.|+..+|+.+..+.+.        ..|.-...+.
T Consensus       349 i~~~~nk~~~A~e~~~kal~l-----~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~  412 (484)
T COG4783         349 ILLEANKAKEAIERLKKALAL-----DPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWD  412 (484)
T ss_pred             HHHHcCChHHHHHHHHHHHhc-----CCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHH
Confidence            356778999999999888753     3555   23346899999999999999998777652        4444455666


Q ss_pred             HHHHHHHHcCC-----------------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          397 TCGKLEWFLGD-----------------TENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       397 ~La~~~~~~g~-----------------~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      -||+.|..+|+                 +++|...+.+|.+-    .|.+.|.....--.+.+.+
T Consensus       413 ~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~dari~~~~  473 (484)
T COG4783         413 LLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADARIDQLR  473 (484)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHHH
Confidence            67776666555                 44555444444433    5567777776665555554

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.04  E-value=1.2  Score=50.56  Aligned_cols=90  Identities=11%  Similarity=-0.023  Sum_probs=45.4

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  395 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l  395 (456)
                      ..+...|++++|+++|+.....   -+.|+    ..+++.|+..|.+.|++++|.+++.++...-   . +.-|. ..++
T Consensus       515 ~gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~-gi~PD-~vTy  582 (1060)
T PLN03218        515 DGCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAET---H-PIDPD-HITV  582 (1060)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---C-CCCCc-HHHH
Confidence            3455667777777777665431   12232    3445566666666666666666665554310   0 11111 2334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Q 012772          396 YTCGKLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       396 ~~La~~~~~~g~~~eA~~~l~~  417 (456)
                      +.|-..|...|++++|.+++++
T Consensus       583 naLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        583 GALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHH
Confidence            4444445555555555555443

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.03  E-value=0.038  Score=33.27  Aligned_cols=28  Identities=29%  Similarity=0.736  Sum_probs=20.6

Q ss_pred             ccCcCcCCCCCCccCcCCCCcccccHHhhh
Q 012772           28 SRCDGCFASSNLKKCSACQVVWYCGSNCQK   57 (456)
Q Consensus        28 ~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~   57 (456)
                      ..|.-|.. ...+.|++|+. +|||-+|.+
T Consensus         3 ~~C~vC~~-~~kY~Cp~C~~-~~CSl~C~k   30 (30)
T PF04438_consen    3 KLCSVCGN-PAKYRCPRCGA-RYCSLACYK   30 (30)
T ss_dssp             EEETSSSS-EESEE-TTT---EESSHHHHH
T ss_pred             CCCccCcC-CCEEECCCcCC-ceeCcEeEC
Confidence            46788887 67899999999 699999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.02  E-value=1.8  Score=49.18  Aligned_cols=53  Identities=15%  Similarity=0.170  Sum_probs=26.5

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI  377 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l  377 (456)
                      +...|++++|.++++.+.+.   -+    .....+++.++..|.+.|++++|.+++.++.
T Consensus       589 y~k~G~ldeA~elf~~M~e~---gi----~p~~~tynsLI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        589 CANAGQVDRAKEVYQMIHEY---NI----KGTPEVYTIAVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHc---CC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            34556666666655554321   11    1122344555555666666666665555443

>PLN03077 Protein ECB2; Provisional

Probab=93.01  E-value=1.9  Score=48.18  Aligned_cols=127  Identities=15%  Similarity=0.125  Sum_probs=78.7

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHH-----HHHHHHhcC------
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLT-----IPVYQRVYP------  385 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~-----l~~~e~~~g------  385 (456)
                      .+...|.+++|.++++...+..  -..|    -...+..+..++.+.|++++|.++.+++     ..+|..+++      
T Consensus       598 a~~~~g~v~ea~~~f~~M~~~~--gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~  671 (857)
T PLN03077        598 ACSRSGMVTQGLEYFHSMEEKY--SITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHR  671 (857)
T ss_pred             HHhhcChHHHHHHHHHHHHHHh--CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence            3445677777777776664321  1122    1355667777777777777777776654     011111110      


Q ss_pred             -------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhc-----------------CCCCchHH
Q 012772          386 -------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRITH-----------------GTNSPFMK  434 (456)
Q Consensus       386 -------------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i-~~~~~-----------------G~~h~~~~  434 (456)
                                   .-.|.-+..+..|+.+|...|++++|.++.+.-.+- +++..                 ...||.+.
T Consensus       672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~  751 (857)
T PLN03077        672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK  751 (857)
T ss_pred             ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence                         112333445667788999999999999887765542 11111                 24699999


Q ss_pred             HHHHHHHHHHHHHHh
Q 012772          435 ELILKLEEAQAEASY  449 (456)
Q Consensus       435 ~~~~~l~~~~~e~~~  449 (456)
                      ++...|.++..++..
T Consensus       752 ~i~~~l~~l~~~~~~  766 (857)
T PLN03077        752 EINTVLEGFYEKMKA  766 (857)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998887764

>smart00101 14_3_3 14-3-3 homologues

Probab=92.97  E-value=3.6  Score=38.34  Aligned_cols=57  Identities=12%  Similarity=0.060  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 012772          366 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       366 ~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~  422 (456)
                      .+.|.+.|++++.+.+.-+|+.||.+.....+.+..|.. +++.++|..+.++|.+--
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            457899999999998888999999999999999888776 588888887766655543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]

Probab=92.87  E-value=0.039  Score=45.37  Aligned_cols=40  Identities=33%  Similarity=0.780  Sum_probs=33.2

Q ss_pred             CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHH--hchhhH
Q 012772           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRL--ECQVLS   71 (456)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~--EC~~l~   71 (456)
                      .+.|.-|.+....++|+.|.+ +|||-.|.    +.|+.  +|+...
T Consensus         5 t~tC~ic~e~~~KYKCpkC~v-PYCSl~Cf----KiHk~tPq~~~ve   46 (157)
T KOG2857|consen    5 TTTCVICLESEIKYKCPKCSV-PYCSLPCF----KIHKSTPQCETVE   46 (157)
T ss_pred             eeeehhhhcchhhccCCCCCC-ccccchhh----hhccCCccccccC
Confidence            467999999877899999999 69999996    68887  886553

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.76  E-value=4.2  Score=37.84  Aligned_cols=82  Identities=20%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Q 012772          366 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGT-NSPFMKELILKLEEA  443 (456)
Q Consensus       366 ~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~~~G~-~h~~~~~~~~~l~~~  443 (456)
                      .++|.+.|++++.+.+..+|+.||.......+.+..+.. +|+.++|..+.++|.+-.....+. +--...+....|..+
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlL  221 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLL  221 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHH
Confidence            368999999999999999999999999999999888765 799999999988888766544431 112244444455555


Q ss_pred             HHHH
Q 012772          444 QAEA  447 (456)
Q Consensus       444 ~~e~  447 (456)
                      +..+
T Consensus       222 rdNl  225 (236)
T PF00244_consen  222 RDNL  225 (236)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.61  E-value=0.95  Score=45.90  Aligned_cols=89  Identities=10%  Similarity=-0.050  Sum_probs=65.2

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCC-----------------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFS-----------------VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  385 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h-----------------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g  385 (456)
                      ...+|+++++++++..+..++...                 .....++..|+....++|+.++|+++++.++..    +|
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke----~p  290 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE----FP  290 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh----CC
Confidence            356778888887776554444321                 124677888999999999999999999988742    33


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772          386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  417 (456)
                      .  -+......+|-..++.++.|.++..++.|
T Consensus       291 ~--~~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  291 N--LDNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             c--cchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            2  12445778888888999999988888776

The molecular function of this protein is uncertain.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.36  E-value=2.8  Score=38.48  Aligned_cols=95  Identities=13%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYT  397 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~-~l~~  397 (456)
                      ..++.++|+..++++++++... |.... -++-...|+.+|-. +.++++|+.+|+++-+-|.   |......+. -+.+
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~-Grf~~-aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk---~ees~ssANKC~lK  159 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDM-GRFTM-AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK---GEESVSSANKCLLK  159 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhh-hHHHH-HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc---chhhhhhHHHHHHH
Confidence            3456666666666666655321 11100 11222345555543 3677777777777655433   344444444 5666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      .|.....+|+|.+|++.|++..
T Consensus       160 vA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  160 VAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777888888888887644

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.33  E-value=2.6  Score=33.91  Aligned_cols=102  Identities=11%  Similarity=0.072  Sum_probs=61.8

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH----HccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM----ELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~----~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .|..+...|++-+|+++.+.+....     .++....-.....+.++.    ...+-+-...|..-+++.+.+-. .-+|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccCh
Confidence            3556678899999999988876542     333321122233344433    34566667778888887776533 4556


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .-|..+++||+-+--.--|+++...-++++.|
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            66999999998543333455555555555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=92.31  E-value=0.96  Score=44.70  Aligned_cols=96  Identities=13%  Similarity=0.123  Sum_probs=71.8

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLM---------QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~---------~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      +..++.+.|+..+++.+.     ++|.|...-         .....-++-..+.|.+..|.+.|..+|.+    -|..--
T Consensus       214 yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i----dP~n~~  284 (486)
T KOG0550|consen  214 YYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI----DPSNKK  284 (486)
T ss_pred             ccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC----Cccccc
Confidence            445567777777777764     567775443         33344455566789999999999999874    555556


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      ..+..|.+.|.+...+|+..+|+.--.+|+.|=.
T Consensus       285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence            6778899999999999999999988888877633

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=92.24  E-value=0.91  Score=50.06  Aligned_cols=103  Identities=10%  Similarity=-0.070  Sum_probs=68.9

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH---------hcC-
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---------VYP-  385 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~---------~~g-  385 (456)
                      ..+..++++++|+.+++..++        .+|..+..+..+|.++...+++.+|...  .++.+...         ++. 
T Consensus        39 ~~~~~~~~~deai~i~~~~l~--------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~  108 (906)
T PRK14720         39 DAYKSENLTDEAKDICEEHLK--------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK  108 (906)
T ss_pred             HHHHhcCCHHHHHHHHHHHHH--------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence            344567899999988775543        2444455566677788777776666555  33332211         000 


Q ss_pred             -CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772          386 -QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  433 (456)
Q Consensus       386 -~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~  433 (456)
                       .+++.--..++.||..|-.+|+.++|...|++++++-     ++++.+
T Consensus       109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~a  152 (906)
T PRK14720        109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEI  152 (906)
T ss_pred             HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHH
Confidence             1244444689999999999999999999999999875     555544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.20  E-value=0.23  Score=29.96  Aligned_cols=28  Identities=21%  Similarity=0.371  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .++++|.++..+|++++|.+.|++.++-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5789999999999999999999988763

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=92.13  E-value=1.5  Score=43.97  Aligned_cols=100  Identities=14%  Similarity=0.088  Sum_probs=73.3

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  400 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  400 (456)
                      .+++++|+++++++.+.        ++.   +...|+.++..+++-.+|+++..+++        ...|.-+..|...|.
T Consensus       182 t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL--------~~~p~d~~LL~~Qa~  242 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEAL--------KENPQDSELLNLQAE  242 (395)
T ss_pred             cccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHH--------HhCCCCHHHHHHHHH
Confidence            46889999888876532        222   23458888888899899999998888        234444888889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          401 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       401 ~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      .+...++++.|++..++|.++.        |.-.+.-..|+++...+
T Consensus       243 fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQL  281 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhc
Confidence            9999999999999999998864        44444445555554433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.10  E-value=1.7  Score=40.03  Aligned_cols=101  Identities=12%  Similarity=0.047  Sum_probs=66.9

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ++|.+..+..++++|+.+|++.+++.+.  +....--...+...+.++.+...|.+|.....+...++...---..+-.+
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~  192 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKA  192 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHH
Confidence            3444455667899999999999887542  12223345566778889999999999999999888887776544444222


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~  417 (456)
                        +..+-.+|+...+|..|++.++.
T Consensus       193 --~va~ilv~L~~~Dyv~aekc~r~  215 (308)
T KOG1585|consen  193 --YVAAILVYLYAHDYVQAEKCYRD  215 (308)
T ss_pred             --HHHHHHHHhhHHHHHHHHHHhcc
Confidence              22222334445577777777665

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.04  E-value=9.8  Score=35.03  Aligned_cols=120  Identities=17%  Similarity=0.106  Sum_probs=62.9

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  402 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~  402 (456)
                      +|+.|=..|.++-....+ .+ +-.+.+.++-..+..|.+. +-++|....+++++||...  +.-..-+.+...+|.+|
T Consensus        49 ~w~~AG~aflkaA~~h~k-~~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiy  123 (288)
T KOG1586|consen   49 NWSAAGDAFLKAADLHLK-AG-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIY  123 (288)
T ss_pred             hHHHHHHHHHHHHHHHHh-cC-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHH
Confidence            444554444444443322 12 2233444444444444443 7777777777777776542  22334455666677776


Q ss_pred             HH-cCCHHHHHHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHhh
Q 012772          403 WF-LGDTENAIKSMTEAVEILRITHGTNSPFMK-ELILKLEEAQAEASYK  450 (456)
Q Consensus       403 ~~-~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~-~~~~~l~~~~~e~~~~  450 (456)
                      -. +-++++|+.+|++|-+-+...   +..... .-+.+.++..+.++.+
T Consensus       124 Esdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~lKvA~yaa~leqY  170 (288)
T KOG1586|consen  124 ESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLLKVAQYAAQLEQY  170 (288)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHHHHHHHHHHHHHH
Confidence            54 367777888887777766543   332222 2334444444444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=92.04  E-value=0.86  Score=48.73  Aligned_cols=79  Identities=20%  Similarity=0.231  Sum_probs=59.3

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      -|.-..+-|..++|+.+|+++.+.                +-|-.+|..+|.|.+|.+..+.          .+-..+-.
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR~----------------DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~  859 (1416)
T KOG3617|consen  806 VAVLAIELGMLEEALILYRQCKRY----------------DLLNKLYQSQGMWSEAFEIAET----------KDRIHLRN  859 (1416)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHH----------------HHHHHHHHhcccHHHHHHHHhh----------ccceehhh
Confidence            344455668888888888887531                2334567789999999988653          34455677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEA  418 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~A  418 (456)
                      ++++.|+-+-..++.+.|+++|+|+
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhc
Confidence            8999999998999999999999974

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=91.80  E-value=6  Score=34.88  Aligned_cols=103  Identities=16%  Similarity=0.131  Sum_probs=60.9

Q ss_pred             cHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q 012772          348 NLMQTREKLIKILMELEDW---KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG----DTENAIKSMTEAVE  420 (456)
Q Consensus       348 ~~~~~~~~L~~~~~~~g~~---~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g----~~~eA~~~l~~Al~  420 (456)
                      .-.+.+++=+.++.++.++   .++.++++.++.-++..+ .-+|.....++.||.++..+|    +..+|..+|++|.+
T Consensus        23 ~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL-~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~  101 (186)
T PF06552_consen   23 LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL-KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE  101 (186)
T ss_dssp             T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence            3355566666666655433   456666666665554433 245667778888988887764    45688899999998


Q ss_pred             HHHHh--cCCCCchHHHHHHH---HHHHHHHHHhhh
Q 012772          421 ILRIT--HGTNSPFMKELILK---LEEAQAEASYKL  451 (456)
Q Consensus       421 i~~~~--~G~~h~~~~~~~~~---l~~~~~e~~~~~  451 (456)
                      -+++.  .-|+...+...+.+   --+++.|++.+.
T Consensus       102 ~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~  137 (186)
T PF06552_consen  102 YFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQG  137 (186)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88865  44555555544433   334466776643

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.75  E-value=2.1  Score=40.01  Aligned_cols=68  Identities=16%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------HHHHhcCCCCchHHHHHHHHH
Q 012772          375 LTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE-------------ILRITHGTNSPFMKELILKLE  441 (456)
Q Consensus       375 ~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~-------------i~~~~~G~~h~~~~~~~~~l~  441 (456)
                      .+.-+|+..-+.. |.+-..++.+|.+++.+|+++||+..++.|+.             ++....|++.+.+...+..|.
T Consensus       191 dAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  191 DAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             hHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            3344455444433 34467788899999999999999999999986             334457888777776666665


Q ss_pred             HH
Q 012772          442 EA  443 (456)
Q Consensus       442 ~~  443 (456)
                      ..
T Consensus       270 ~~  271 (299)
T KOG3081|consen  270 LS  271 (299)
T ss_pred             hc
Confidence            54

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.46  E-value=1.1  Score=41.07  Aligned_cols=68  Identities=18%  Similarity=0.083  Sum_probs=58.8

Q ss_pred             ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 012772          363 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  431 (456)
Q Consensus       363 ~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~  431 (456)
                      .-.+++|++.+.-+|-.++ +.+..+-.+|..+..+|=+|-.+|+.++...++++|++.++..+-.+..
T Consensus        90 ~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~  157 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF  157 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            3578899999998888766 5667777999999999999999999999999999999999998866653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=91.38  E-value=5  Score=38.15  Aligned_cols=116  Identities=13%  Similarity=0.017  Sum_probs=78.5

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      .+..+..+|++..|...|.++.++     -|+|+.+.   ..++.++..+   .+-.++..+.++++.       .+|-+
T Consensus       162 Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~---~g~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~~~  226 (287)
T COG4235         162 LGRAYMALGRASDALLAYRNALRL-----AGDNPEIL---LGLAEALYYQAGQQMTAKARALLRQALA-------LDPAN  226 (287)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHhcCCcccHHHHHHHHHHHh-------cCCcc
Confidence            344567789999999999999754     35565544   3455554433   355677777777764       23333


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                       ...++-||..++.+|+|.+|...++.-++    ..-++.|-..-+...++........
T Consensus       227 -iral~lLA~~afe~g~~~~A~~~Wq~lL~----~lp~~~~rr~~ie~~ia~~~~~~~~  280 (287)
T COG4235         227 -IRALSLLAFAAFEQGDYAEAAAAWQMLLD----LLPADDPRRSLIERSIARALAQRSA  280 (287)
T ss_pred             -HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHHhcccc
Confidence             46778899999999999999977766555    4455677666666666666554443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.23  E-value=0.59  Score=44.77  Aligned_cols=96  Identities=15%  Similarity=0.031  Sum_probs=53.6

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-------hc------
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR-------VY------  384 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~-------~~------  384 (456)
                      +.-.++.+-|+..|++++.+     |..++.+   ..+++-.+...|+++-++..+++++...+.       .|      
T Consensus       334 yfY~~~PE~AlryYRRiLqm-----G~~speL---f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQM-----GAQSPEL---FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             cccCCChHHHHHHHHHHHHh-----cCCChHH---HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence            34567889999999998753     3333322   234555555555555555555544433220       00      


Q ss_pred             ----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          385 ----------------PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       385 ----------------g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                                      =...+.-+-.+++||.+....|+.++|..+|.-|...
T Consensus       406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence                            0234555666666666666666666666666665543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=91.19  E-value=10  Score=36.95  Aligned_cols=118  Identities=17%  Similarity=0.211  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 012772          305 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  384 (456)
Q Consensus       305 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~  384 (456)
                      +++...+...+..+...|+...|+++...+++++  .|      -+..+..-+..|+..|+...|+.-.+.+-.+     
T Consensus       152 ~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~W------da~l~~~Rakc~i~~~e~k~AI~Dlk~askL-----  218 (504)
T KOG0624|consen  152 IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PW------DASLRQARAKCYIAEGEPKKAIHDLKQASKL-----  218 (504)
T ss_pred             HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cc------hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----
Confidence            3445555566666777899999999888887653  22      3555666678999999999998776655432     


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          385 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       385 g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      ..++   --.+|++++++...|+.+.+++..++.+.     +.|+|-.-.--+..|..+
T Consensus       219 s~Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkKv  269 (504)
T KOG0624|consen  219 SQDN---TEGHYKISQLLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKKV  269 (504)
T ss_pred             cccc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHHH
Confidence            2233   34688999999999999999988888876     678885443333333333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.03  E-value=1.4  Score=34.22  Aligned_cols=56  Identities=18%  Similarity=0.210  Sum_probs=39.4

Q ss_pred             CccHHHHHHHHHHHHHHccCHHHHHHHHHHH----------------HHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772          346 SVNLMQTREKLIKILMELEDWKEALAYCQLT----------------IPVYQRVYPQFHPLLGLQYYTCGKLE  402 (456)
Q Consensus       346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~----------------l~~~e~~~g~~hp~~~~~l~~La~~~  402 (456)
                      +|.=..++..++..+...|++++|++.+..+                |.+++ .+|+.||.+...-.+|+.++
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~-~lg~~~plv~~~RRkL~~lL   89 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE-LLGPGDPLVSEYRRKLASLL   89 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH-HcCCCChHHHHHHHHHHHHh
Confidence            3333578889999999999999999887643                33333 67888898888888887765

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.92  E-value=1.7  Score=43.00  Aligned_cols=68  Identities=7%  Similarity=0.071  Sum_probs=56.3

Q ss_pred             CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      -+|..+.+-..++.++..-|.++.++.+.++.|..+    +..     .....||.+......+++|+.+|..|+.+
T Consensus       433 ~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  433 INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----ccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            356777888899999999999999999999888643    332     34678899999999999999999999875

>smart00028 TPR Tetratricopeptide repeats

Probab=90.92  E-value=0.31  Score=28.24  Aligned_cols=29  Identities=28%  Similarity=0.418  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ..++.+|.++...|++++|...+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35788999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=90.44  E-value=1.5  Score=37.05  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=39.8

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccC
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED  365 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~  365 (456)
                      +..+..+..+|++++|+..+++.++     |||.|+.+-.+++..|-.+..+..
T Consensus        51 L~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   51 LDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCCccHHHHHHHHHHHHHhh
Confidence            4566678889999999999988865     799999988888888877776644

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=90.42  E-value=2  Score=44.82  Aligned_cols=117  Identities=17%  Similarity=0.074  Sum_probs=81.7

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ++..+.+.++.++|...++..+.++.     -.|.|..++.+   .|-.+..+|+-++|.++.+..+.        +.+-
T Consensus        10 lF~~~lk~yE~kQYkkgLK~~~~iL~-----k~~eHgeslAm---kGL~L~~lg~~~ea~~~vr~glr--------~d~~   73 (700)
T KOG1156|consen   10 LFRRALKCYETKQYKKGLKLIKQILK-----KFPEHGESLAM---KGLTLNCLGKKEEAYELVRLGLR--------NDLK   73 (700)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHH-----hCCccchhHHh---ccchhhcccchHHHHHHHHHHhc--------cCcc
Confidence            34455555667777777777666665     24777776654   45566778999999999988775        4455


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL  451 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~~~  451 (456)
                      -..-+.-+|.++..-.+|++|++.|+.|+.+     ++++   .+++..|+-++..|+-.+
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN---~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-----EKDN---LQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHHHhhh
Confidence            5566777899999999999999999999985     3333   455555555555555433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=90.40  E-value=1.3  Score=36.78  Aligned_cols=60  Identities=22%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      .-+.+..+.|+++.|++.+.++|.+        -|..+..|++=|+.+..+|+.++|++-+.+|+++-
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa  107 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA  107 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3445677889999999999999864        46778899999999999999999999999999864

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.37  E-value=0.42  Score=28.73  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      ++..+|.++..+|++++|.+++++++.-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5678999999999999999999998763

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=90.32  E-value=1.1  Score=46.68  Aligned_cols=64  Identities=31%  Similarity=0.311  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      ++.+++-|++.|-..|++++|+++..++|..        .|...-.++.-|+++-+.|++.+|...+++|..
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~  256 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARE  256 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4678899999999999999999999999853        477777888999999999999999998876544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.22  E-value=3.5  Score=39.63  Aligned_cols=85  Identities=14%  Similarity=0.070  Sum_probs=54.7

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      +...++++.|.+.++...+     +.++     .+...|+.++..    .+.+.+|..+++.+..    .+    +....
T Consensus       141 ~L~~~R~dlA~k~l~~~~~-----~~eD-----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~----~~t~~  202 (290)
T PF04733_consen  141 LLKMNRPDLAEKELKNMQQ-----IDED-----SILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KF----GSTPK  202 (290)
T ss_dssp             HHHTT-HHHHHHHHHHHHC-----CSCC-----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHH
T ss_pred             HHHcCCHHHHHHHHHHHHh-----cCCc-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----cc----CCCHH
Confidence            3456888888887766532     3332     223344444333    3468888888877532    22    23456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .++.+|.+++.+|+++||++.+++|++
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al~  229 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEALE  229 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            789999999999999999999999864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.14  E-value=0.22  Score=30.86  Aligned_cols=27  Identities=30%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIK  413 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~  413 (456)
                      .+|.-...+++||.++..+|++++|++
T Consensus         8 ~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    8 LNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            467778899999999999999999863

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.00  E-value=5.5  Score=39.62  Aligned_cols=82  Identities=15%  Similarity=0.286  Sum_probs=60.6

Q ss_pred             CHHHHHHHHH----HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCC---------------------CCccHHH
Q 012772          297 SKEEIKKIAS----EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---------------------FSVNLMQ  351 (456)
Q Consensus       297 ~~~~~~~~~~----~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p---------------------~h~~~~~  351 (456)
                      +++.+..++.    -+.+++..+..+..+|+++.|.++.++++-..++.+||                     .|.....
T Consensus        25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl  104 (360)
T PF04910_consen   25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL  104 (360)
T ss_pred             CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence            5555555543    25778888888889999999999999998776654443                     3445566


Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIP  378 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~  378 (456)
                      ++..-+..+.+.|-|.-|+++++-++.
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLls  131 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLS  131 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            667777788889999999999985543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.82  E-value=0.49  Score=29.30  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=20.7

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHH
Q 012772          347 VNLMQTREKLIKILMELEDWKEALA  371 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~  371 (456)
                      |.-..++.+||.+|...|++++|++
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3346778999999999999999963

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.28  E-value=0.47  Score=27.31  Aligned_cols=25  Identities=12%  Similarity=0.106  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~  417 (456)
                      ...+.||.++..+|+.++|+..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            3578899999999999999988764

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PLN03077 Protein ECB2; Provisional

Probab=89.06  E-value=4.2  Score=45.52  Aligned_cols=90  Identities=16%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  395 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l  395 (456)
                      ..+...|+.++|++++++..+   .-+.|+...    +..+..++.+.|++++|.+++.++...    +| ..|.. .++
T Consensus       562 ~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T----~~~ll~a~~~~g~v~ea~~~f~~M~~~----~g-i~P~~-~~y  628 (857)
T PLN03077        562 TGYVAHGKGSMAVELFNRMVE---SGVNPDEVT----FISLLCACSRSGMVTQGLEYFHSMEEK----YS-ITPNL-KHY  628 (857)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH---cCCCCCccc----HHHHHHHHhhcChHHHHHHHHHHHHHH----hC-CCCch-HHH
Confidence            345567889999998887653   224455433    455667889999999999999877532    22 33433 678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Q 012772          396 YTCGKLEWFLGDTENAIKSMTEA  418 (456)
Q Consensus       396 ~~La~~~~~~g~~~eA~~~l~~A  418 (456)
                      ..|..++...|++++|.+++++.
T Consensus       629 ~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        629 ACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHC
Confidence            88999999999999999998863

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=88.95  E-value=4  Score=43.53  Aligned_cols=79  Identities=13%  Similarity=0.032  Sum_probs=62.2

Q ss_pred             cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +.|+||   .+...|+.-|..+++.+.|.++++++|++    -|++|+.   .+.-||.+...++++.+|+++..-|++-
T Consensus       473 ~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  473 FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            678887   55678888999999999999999999863    4566654   3555678888899999999999999887


Q ss_pred             HHHhcCCCC
Q 012772          422 LRITHGTNS  430 (456)
Q Consensus       422 ~~~~~G~~h  430 (456)
                      ...-||..|
T Consensus       543 ~~~N~~l~~  551 (799)
T KOG4162|consen  543 FGDNHVLMD  551 (799)
T ss_pred             hhhhhhhch
Confidence            666544443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=88.91  E-value=2.7  Score=45.83  Aligned_cols=24  Identities=17%  Similarity=-0.003  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEA  418 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~A  418 (456)
                      ++.|...|.+.|++++|.+.+++.
T Consensus       363 ~~~Li~~y~k~G~~~~A~~vf~~m  386 (697)
T PLN03081        363 NTALVDLYSKWGRMEDARNVFDRM  386 (697)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHhC
Confidence            344445555555555555555543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=88.75  E-value=9.9  Score=39.71  Aligned_cols=104  Identities=13%  Similarity=0.035  Sum_probs=62.3

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP----------------  378 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~----------------  378 (456)
                      |..+...|++++|++...++++.        .|.+.+.+..-|.++-..|++.+|.+....+-.                
T Consensus       201 Aqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  201 AQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            33444456666666666655432        334455555666666666666666655432211                


Q ss_pred             -----------HHHHhcCCC-Ch-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772          379 -----------VYQRVYPQF-HP-------LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  426 (456)
Q Consensus       379 -----------~~e~~~g~~-hp-------~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~  426 (456)
                                 +...+.-.+ .|       .-.+...+.|..|..+|++..|++.+.....++...+
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~  339 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE  339 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence                       111111111 22       2245556669999999999999999999999988864

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=88.68  E-value=14  Score=37.02  Aligned_cols=112  Identities=14%  Similarity=0.079  Sum_probs=70.9

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHH--------
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQLTIPVYQR--------  382 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~--~~g~~~~A~~~~~~~l~~~e~--------  382 (456)
                      +.|..+..+++|..|.++++.+...    +++...  .+.+..|+..|.  +.-++++|.++.++.+.....        
T Consensus       136 ~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l  209 (379)
T PF09670_consen  136 RRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGL  209 (379)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence            3444556789999999998887642    444333  566677777665  567888888888766542111        


Q ss_pred             ------------hcCC-------C---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hcCCCC
Q 012772          383 ------------VYPQ-------F---HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTNS  430 (456)
Q Consensus       383 ------------~~g~-------~---hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~----~~G~~h  430 (456)
                                  +.+.       .   .+.+..-++..|.--..+|+|+.|.-.+-+|++.+..    .||-+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~t  283 (379)
T PF09670_consen  210 KELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGIDT  283 (379)
T ss_pred             HHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence                        1110       0   2333344444455555689999999999999986554    455544

>KOG3612 consensus PHD Zn-finger protein [General function prediction only]

Probab=88.27  E-value=0.11  Score=52.37  Aligned_cols=42  Identities=26%  Similarity=0.650  Sum_probs=31.7

Q ss_pred             CCccCcCcCCCCCCccCcCCCC-cccccHHhhhhcHHHhHHhchhhH
Q 012772           26 SISRCDGCFASSNLKKCSACQV-VWYCGSNCQKLDWKLHRLECQVLS   71 (456)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~-v~yCs~~C~~~~~~~H~~EC~~l~   71 (456)
                      ...-|.+|... ..+   .|.| ..|||.+||..+|+.|+.-|..-.
T Consensus       526 kKQWC~nC~~E-Aiy---~CCWNTSYCsveCQQ~HW~~H~ksCrrk~  568 (588)
T KOG3612|consen  526 KKQWCYNCLDE-AIY---HCCWNTSYCSVECQQGHWPEHRKSCRRKK  568 (588)
T ss_pred             HHHHHHhhhHH-HHH---HhhccccccCcchhhccchhHhhhhcccC
Confidence            34568888877 222   3444 589999999999999999998554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=88.20  E-value=7.3  Score=34.59  Aligned_cols=95  Identities=15%  Similarity=0.108  Sum_probs=64.5

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCChHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLL  391 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-~~hp~~  391 (456)
                      ..+..+.+-|++.||...|++++.      |+.-.+ ..++-.++++....|++..|....+++.+.    -| .-.|+ 
T Consensus        94 rLa~al~elGr~~EA~~hy~qals------G~fA~d-~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~----~pa~r~pd-  161 (251)
T COG4700          94 RLANALAELGRYHEAVPHYQQALS------GIFAHD-AAMLLGLAQAQFAIQEFAAAQQTLEDLMEY----NPAFRSPD-  161 (251)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhc------cccCCC-HHHHHHHHHHHHhhccHHHHHHHHHHHhhc----CCccCCCC-
Confidence            345556677999999999888763      333222 234457888899999999888877665421    12 11222 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                        ...-+|.++..+|++++|+..++.|+.-
T Consensus       162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         162 --GHLLFARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             --chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence              2334688888999999999988888753

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.19  E-value=4.6  Score=39.32  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=56.9

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      +.+..+|..|+.+++-....     +...  --++-..++..+..+|+|++|+..+.-+..       .+.+. +-...+
T Consensus        32 fls~rDytGAislLefk~~~-----~~EE--E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~~-~el~vn   96 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNL-----DREE--EDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDAP-AELGVN   96 (557)
T ss_pred             HHhcccchhHHHHHHHhhcc-----chhh--hHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCCC-cccchh
Confidence            33456888888765544321     1111  134456789999999999999888765432       22222 445667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEA  418 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~A  418 (456)
                      ||-.++.+|+|.||.....+|
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            888888999999988777664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=87.96  E-value=2.5  Score=37.39  Aligned_cols=68  Identities=16%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       348 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      .+..-+..|+....+.|++.||..++++++..   +| ...   ...+..+|+.+...++..+|...|++..+.-
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG---~f-A~d---~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSG---IF-AHD---AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---cc-CCC---HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            35666788999999999999999999998753   11 122   3457788999999999999999988766543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.95  E-value=1.4  Score=29.10  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          396 YTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       396 ~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      +.||++|...|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6799999999999999999999884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.71  E-value=18  Score=39.53  Aligned_cols=105  Identities=15%  Similarity=0.123  Sum_probs=75.7

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCC-Ccc----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-SVN----LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-  386 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~-h~~----~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~-  386 (456)
                      -.|....++.++.+|..+..++..    .+++. +..    .+....--+.+....|+.++|+++++.++.    .+|. 
T Consensus       420 l~aW~~~s~~r~~ea~~li~~l~~----~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~----~L~~~  491 (894)
T COG2909         420 LQAWLLASQHRLAEAETLIARLEH----FLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV----QLPEA  491 (894)
T ss_pred             HHHHHHHHccChHHHHHHHHHHHH----HhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcccc
Confidence            355556678899999887666643    34442 222    222222334466778999999999998875    3454 


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      ........+..+|.+.+-.|++++|..+.++|.++..+.
T Consensus       492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~  530 (894)
T COG2909         492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH  530 (894)
T ss_pred             cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence            445566788899999999999999999999999998774

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=87.70  E-value=6.7  Score=41.03  Aligned_cols=86  Identities=10%  Similarity=0.031  Sum_probs=50.6

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--------DWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g--------~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      ...+|+.++++++++     .|+.   ..++..++.+|....        ++..+.+..++++.    +  +..|.....
T Consensus       357 ~~~~A~~lle~Ai~l-----dP~~---a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a----l--~~~~~~~~~  422 (517)
T PRK10153        357 SLNKASDLLEEILKS-----EPDF---TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA----L--PELNVLPRI  422 (517)
T ss_pred             HHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh----c--ccCcCChHH
Confidence            466777888877653     2333   444444454443322        22233333332221    1  122222456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      +.-+|..+...|++++|...+++|+++-
T Consensus       423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~  450 (517)
T PRK10153        423 YEILAVQALVKGKTDEAYQAINKAIDLE  450 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            7777888888999999999999999987

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.55  E-value=4.7  Score=37.73  Aligned_cols=115  Identities=14%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  398 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L  398 (456)
                      ++-|+.+.|...++++.+.-.+.-+-.+.  .-+..+.+.+|.-..+|.+|...+.+.+        ...|..+...++-
T Consensus       223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~--~~V~~n~a~i~lg~nn~a~a~r~~~~i~--------~~D~~~~~a~NnK  292 (366)
T KOG2796|consen  223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGK--IMVLMNSAFLHLGQNNFAEAHRFFTEIL--------RMDPRNAVANNNK  292 (366)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhccchh--HHHHhhhhhheecccchHHHHHHHhhcc--------ccCCCchhhhchH
Confidence            45578777777777776443332221111  2223455666667778877777665543        4667778888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          399 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       399 a~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      |..++..|+..+|++.++.++.+.     |.|-.+..++.+|..+ .|+.|
T Consensus       293 ALcllYlg~l~DAiK~~e~~~~~~-----P~~~l~es~~~nL~tm-yEL~Y  337 (366)
T KOG2796|consen  293 ALCLLYLGKLKDALKQLEAMVQQD-----PRHYLHESVLFNLTTM-YELEY  337 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC-----CccchhhhHHHHHHHH-HHHHh
Confidence            999999999999999999988875     3444444455444433 24444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.43  E-value=12  Score=33.37  Aligned_cols=70  Identities=13%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772          342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  417 (456)
                      .+.+++-.+-++ .++..+.+.|++++|+...+.++.     .+.+.-..+..-..||.++..+|++++|++.|..
T Consensus        82 n~~t~Ya~laaL-~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976          82 NGKTIYAVLAAL-ELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             ccccHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            444455554443 678889999999999999888773     5678888899999999999999999999888763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.42  E-value=11  Score=33.23  Aligned_cols=71  Identities=15%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      +-.++..++..|.+.|++++|++.+.++.+   ..  ..--.+...++++-.+....|++....+++.+|..+++.
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~---~~--~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARD---YC--TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            456678999999999999999999998653   22  223344556777788888999999999999999999998

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=87.19  E-value=3.4  Score=32.03  Aligned_cols=55  Identities=25%  Similarity=0.288  Sum_probs=38.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------HHHHHhcCCCCchHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV----------------EILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al----------------~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      +|.=....+.||..+...|++++|++.|-+.+                +|++ .+|++||.+.....+|..+
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~-~lg~~~plv~~~RRkL~~l   88 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE-LLGPGDPLVSEYRRKLASL   88 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH-HcCCCChHHHHHHHHHHHH
Confidence            34444778999999999999999998876433                3333 3799999999888887654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.18  E-value=3.2  Score=37.23  Aligned_cols=64  Identities=20%  Similarity=0.127  Sum_probs=50.6

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .=++-+...|+|++|..-|..+|++...   ...-.....|.+=|...+.+++++.|++-..+|+++
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~---~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel  163 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPS---TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL  163 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCcc---ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence            3455667789999999999999986432   334667778888899999999999999888777764

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=87.07  E-value=0.37  Score=34.22  Aligned_cols=21  Identities=29%  Similarity=0.782  Sum_probs=15.3

Q ss_pred             CccCcCCCCc----------ccccHHhhhhc
Q 012772           39 LKKCSACQVV----------WYCGSNCQKLD   59 (456)
Q Consensus        39 ~~~C~~C~~v----------~yCs~~C~~~~   59 (456)
                      .++|+.|+..          +|||+.|+.-|
T Consensus         6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~ID   36 (62)
T PRK00418          6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLID   36 (62)
T ss_pred             cccCCCCCCcccccCCCCcCCcccHHHHhhh
Confidence            3566666543          79999999876

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=86.31  E-value=15  Score=39.00  Aligned_cols=28  Identities=18%  Similarity=0.341  Sum_probs=14.1

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHH
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQ  374 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~  374 (456)
                      ..+-.+..+++..+.++..|++|.+||.
T Consensus       793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~  820 (1189)
T KOG2041|consen  793 EGKEDAFRNIGETFAEMMEWEEAAKYYS  820 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.27  E-value=14  Score=34.65  Aligned_cols=66  Identities=18%  Similarity=0.213  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT  416 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~  416 (456)
                      ...+.-.+|..|...|+|++|+++++.+...|++  .+.+......+..|...+...|+.++.+.+.-
T Consensus       177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l  242 (247)
T PF11817_consen  177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL  242 (247)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3455568899999999999999999999777664  37888889999999999999999887665543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5

Probab=85.73  E-value=2.3  Score=37.75  Aligned_cols=51  Identities=18%  Similarity=-0.056  Sum_probs=43.4

Q ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772          383 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  433 (456)
Q Consensus       383 ~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~  433 (456)
                      .-|...|.....|.+|..-|..+|+++.|+..-+.|++=+.++.|.+||.+
T Consensus       131 ~~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v  181 (181)
T PF09311_consen  131 SQGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV  181 (181)
T ss_dssp             -S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence            345788999999999999999999999999999999999999999999974

This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.

>PRK11906 transcriptional regulator; Provisional

Probab=85.64  E-value=5.2  Score=40.51  Aligned_cols=68  Identities=9%  Similarity=-0.033  Sum_probs=57.5

Q ss_pred             cCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          342 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       342 l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      ++|.++   .++..+|.++...|+++.|...+++++.        -.|..+..++..|.+....|+.++|...+++|++
T Consensus       333 ld~~Da---~a~~~~g~~~~~~~~~~~a~~~f~rA~~--------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        333 ITTVDG---KILAIMGLITGLSGQAKVSHILFEQAKI--------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             cCCCCH---HHHHHHHHHHHhhcchhhHHHHHHHHhh--------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            455554   4556778888888999999999999984        5788899999999999999999999999999765

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.59  E-value=5.9  Score=37.58  Aligned_cols=74  Identities=23%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  429 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~  429 (456)
                      .......+..|...|.+.+|.+++++++.        .||..-.....|-.++...|+--+|.+.|++-.+.++..+|-+
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~  350 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID  350 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence            34455667788899999999999999984        6888888888888999999999999999999999999999976


Q ss_pred             Cc
Q 012772          430 SP  431 (456)
Q Consensus       430 h~  431 (456)
                      -.
T Consensus       351 vd  352 (361)
T COG3947         351 VD  352 (361)
T ss_pred             cc
Confidence            44

>PLN02789 farnesyltranstransferase

Probab=85.55  E-value=9.4  Score=37.29  Aligned_cols=94  Identities=14%  Similarity=0.061  Sum_probs=53.0

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCC------------
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQ------------  386 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~e~~~g~------------  386 (456)
                      ..++.++|+.++.+++.+     .|.|+   .+...-+.++..+| ++++|+.++.+++..-.+-|..            
T Consensus        49 ~~e~serAL~lt~~aI~l-----nP~~y---taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         49 SDERSPRALDLTADVIRL-----NPGNY---TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             cCCCCHHHHHHHHHHHHH-----CchhH---HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence            356778888888777653     34443   34444455555566 5677777776666432111111            


Q ss_pred             ----------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          387 ----------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       387 ----------------~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                                      .+|.--..++..+.++..+|++++|++++.+++++
T Consensus       121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence                            11222223334455556677788888888887765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=85.17  E-value=14  Score=37.78  Aligned_cols=89  Identities=16%  Similarity=0.059  Sum_probs=58.4

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC----Ch---------
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----HP---------  389 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~----hp---------  389 (456)
                      +.+.-+++-++++++.        ++.+.++.-|+.-  ...-..+|.++++++++.-|..+|..    |.         
T Consensus       183 np~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  183 NPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR  252 (539)
T ss_pred             CHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence            5555566666676653        3334443333321  12346788888988888888887753    21         


Q ss_pred             ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          390 ----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       390 ----~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                          .....-..||...+++|+.+||+++++.-++-
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke  288 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE  288 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence                12445567899999999999999999876654

The molecular function of this protein is uncertain.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.07  E-value=10  Score=28.38  Aligned_cols=53  Identities=19%  Similarity=0.051  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hcCCCCchHHH-HHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE-LILKLEEA  443 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~--~~G~~h~~~~~-~~~~l~~~  443 (456)
                      .|..+...|.-.-..|+|++|..+|.+|++.+..  .+|.-.|...+ +..+..+-
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eY   60 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEY   60 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            4556666777777899999999999999999988  55533333333 33444433

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.02  E-value=1.6  Score=25.07  Aligned_cols=24  Identities=25%  Similarity=0.171  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQL  375 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~  375 (456)
                      +...|+.++..+|++++|...+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            567899999999999999998753

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=84.78  E-value=16  Score=29.87  Aligned_cols=83  Identities=14%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHhcCC---CCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKIL--MELEDWKEALAYCQLTIPVYQRVYPQ---FHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       350 ~~~~~~L~~~~--~~~g~~~~A~~~~~~~l~~~e~~~g~---~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      +.++..|...-  +.-|.|++|..-|+++.++-+.+-+.   +|- .=+..+-.|+..+..+|+|++++..-.+|+..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            33444444433  33489999999999999998866554   333 2356777889999999999999999999999998


Q ss_pred             HhcCCCCchH
Q 012772          424 ITHGTNSPFM  433 (456)
Q Consensus       424 ~~~G~~h~~~  433 (456)
                      +. |.=|...
T Consensus        87 RR-GEL~qde   95 (144)
T PF12968_consen   87 RR-GELHQDE   95 (144)
T ss_dssp             HH---TTSTH
T ss_pred             hc-ccccccc
Confidence            85 6556443

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=84.74  E-value=4  Score=37.99  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHH
Q 012772          325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQ  381 (456)
Q Consensus       325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~e  381 (456)
                      ++|.+.|+.+..+..+.|+|.||..+.+.-+.+..|.+ +|+.++|.++++++++-.-
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~  200 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI  200 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            46777888888888888999999999999888877655 7999999999999887543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PRK01343 zinc-binding protein; Provisional

Probab=84.65  E-value=0.65  Score=32.36  Aligned_cols=13  Identities=23%  Similarity=0.833  Sum_probs=11.0

Q ss_pred             CcccccHHhhhhc
Q 012772           47 VVWYCGSNCQKLD   59 (456)
Q Consensus        47 ~v~yCs~~C~~~~   59 (456)
                      +.+|||+.|+.-|
T Consensus        23 ~rPFCS~RC~~iD   35 (57)
T PRK01343         23 AYPFCSERCRDID   35 (57)
T ss_pred             CCcccCHHHhhhh
Confidence            4589999999876

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=84.00  E-value=6.6  Score=41.97  Aligned_cols=88  Identities=20%  Similarity=0.260  Sum_probs=58.2

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHH--HHHHHHHHHHHhcCCCChHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGLQY  395 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~--~~~~~l~~~e~~~g~~hp~~~~~l  395 (456)
                      +..+|.+.+|.+.|..++.     +.|+|+..+   ..+|.++.+.|+-.-|..  +...++.     +++..|.   .+
T Consensus       694 ~~~~~~~~EA~~af~~Al~-----ldP~hv~s~---~Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~e---aW  757 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVALA-----LDPDHVPSM---TALAELLLELGSPRLAEKRSLLSDALR-----LDPLNHE---AW  757 (799)
T ss_pred             HHHHHhhHHHHHHHHHHHh-----cCCCCcHHH---HHHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCHH---HH
Confidence            4455677777776665543     457776544   467777777775444444  6665553     3333333   58


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          396 YTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       396 ~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +.||.+...+|+.++|.+.|+-|++.
T Consensus       758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  758 YYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhh
Confidence            88888888888888888888888764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.78  E-value=1.3  Score=42.87  Aligned_cols=96  Identities=18%  Similarity=0.229  Sum_probs=70.8

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ..+.-+|..+..+|.+++|++.+-+++.        -++..+.++..=+.+++.++.+..|+.=|..++.+        .
T Consensus       115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~--------lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n  178 (377)
T KOG1308|consen  115 NDKKVQASEALNDGEFDTAIELFTSAIE--------LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------N  178 (377)
T ss_pred             HHHHHHHHHHhcCcchhhhhcccccccc--------cCCchhhhcccccceeeeccCCchhhhhhhhhhcc--------C
Confidence            3444566677889999999998776653        36666777777888999999999999999888754        4


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      |+.+.-+--=|.+...+|++++|.+.|+.|.+
T Consensus       179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k  210 (377)
T KOG1308|consen  179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACK  210 (377)
T ss_pred             cccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence            44444444445666678888888888887765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=83.74  E-value=9.6  Score=42.07  Aligned_cols=105  Identities=17%  Similarity=0.106  Sum_probs=82.3

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      .....|.+.|++..|++.+.++.     .+.|.|.   -.....+.+...+|.|++|+..+...+....... +.-...|
T Consensus       601 gLGeAY~~sGry~~AlKvF~kAs-----~LrP~s~---y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLa  671 (1238)
T KOG1127|consen  601 GLGEAYPESGRYSHALKVFTKAS-----LLRPLSK---YGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLA  671 (1238)
T ss_pred             HHHHHHHhcCceehHHHhhhhhH-----hcCcHhH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHH
Confidence            45556788899999998887763     3555553   3455667777889999999999998887766443 3445678


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  426 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~  426 (456)
                      ..+..+++.+.-.|-+..|..+++++++++....
T Consensus       672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l  705 (1238)
T KOG1127|consen  672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL  705 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999888775

>smart00028 TPR Tetratricopeptide repeats

Probab=83.53  E-value=2.1  Score=24.38  Aligned_cols=29  Identities=24%  Similarity=0.413  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      .++..++.++..+|++++|..++++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35678899999999999999999988764

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10941 hypothetical protein; Provisional

Probab=83.30  E-value=18  Score=34.41  Aligned_cols=85  Identities=15%  Similarity=0.177  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  428 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~  428 (456)
                      +.+...+|-.+|.+.++|+.|+...++++.     +.|++|   .....-|.+|..+|.+..|..=|+.-++     .-|
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~-----l~P~dp---~e~RDRGll~~qL~c~~~A~~DL~~fl~-----~~P  246 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQ-----FDPEDP---YEIRDRGLIYAQLDCEHVALSDLSYFVE-----QCP  246 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHHH-----hCC
Confidence            567788999999999999999999998884     445555   3455567777788888877765554433     446


Q ss_pred             CCchHHHHHHHHHHHHHH
Q 012772          429 NSPFMKELILKLEEAQAE  446 (456)
Q Consensus       429 ~h~~~~~~~~~l~~~~~e  446 (456)
                      +.|....+...+..++..
T Consensus       247 ~dp~a~~ik~ql~~l~~~  264 (269)
T PRK10941        247 EDPISEMIRAQIHSIEQK  264 (269)
T ss_pred             CchhHHHHHHHHHHHhhc
Confidence            778777777777777653

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=83.08  E-value=1.1  Score=25.41  Aligned_cols=24  Identities=21%  Similarity=0.576  Sum_probs=17.8

Q ss_pred             CCCCCCCcccCCCCCCeeeccCCC
Q 012772          271 DDGCSGFLLRDSDDKGFTCQQCGL  294 (456)
Q Consensus       271 C~~C~~~~~~~~~~~~~~C~~C~~  294 (456)
                      |.+|...+.+......|.|+.||.
T Consensus         1 C~sC~~~i~~r~~~v~f~CPnCG~   24 (24)
T PF07754_consen    1 CTSCGRPIAPREQAVPFPCPNCGF   24 (24)
T ss_pred             CccCCCcccCcccCceEeCCCCCC
Confidence            678877776655566799999983

It is likely to bind zinc via its four well-conserved cysteine residues.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=82.92  E-value=11  Score=32.75  Aligned_cols=95  Identities=21%  Similarity=0.194  Sum_probs=64.2

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      +...|++++|...+++++.     ..|............+..+...+++++|+....+++......       ....+..
T Consensus       140 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~  207 (291)
T COG0457         140 LYELGDYEEALELYEKALE-----LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLN  207 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHh-----cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHH
Confidence            4456788888888777732     222122344444555555777788888888888877654433       5667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      ++..+...+++++|...+.+++.....
T Consensus       208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         208 LGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             hhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            788888888888888888888776654

>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.77  E-value=0.66  Score=32.84  Aligned_cols=11  Identities=27%  Similarity=0.933  Sum_probs=9.6

Q ss_pred             ccccHHhhhhc
Q 012772           49 WYCGSNCQKLD   59 (456)
Q Consensus        49 ~yCs~~C~~~~   59 (456)
                      +|||+.||.-|
T Consensus        27 PFCSkRCklID   37 (65)
T COG3024          27 PFCSKRCKLID   37 (65)
T ss_pred             cchhHhhhhcc
Confidence            79999999775

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=82.62  E-value=22  Score=37.44  Aligned_cols=100  Identities=13%  Similarity=0.140  Sum_probs=70.1

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  399 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La  399 (456)
                      +..+|++|++.|+.++.     ++|+|.   +++..|+-+-+++++++...+-=.+.|.        .-|..-..+..+|
T Consensus        87 ~dK~Y~eaiKcy~nAl~-----~~~dN~---qilrDlslLQ~QmRd~~~~~~tr~~LLq--------l~~~~ra~w~~~A  150 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALK-----IEKDNL---QILRDLSLLQIQMRDYEGYLETRNQLLQ--------LRPSQRASWIGFA  150 (700)
T ss_pred             hhhhHHHHHHHHHHHHh-----cCCCcH---HHHHHHHHHHHHHHhhhhHHHHHHHHHH--------hhhhhHHHHHHHH
Confidence            34689999999999976     456664   5556788888889998877766555553        3445556677888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 012772          400 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  437 (456)
Q Consensus       400 ~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~  437 (456)
                      ..+...|++..|.+.+++-.....  .+++...+....
T Consensus       151 vs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se  186 (700)
T KOG1156|consen  151 VAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSE  186 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHH
Confidence            888899999999888877666555  344444444433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.14  E-value=14  Score=34.49  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          370 LAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       370 ~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      +++..+++..+++.  ..+........+||.-|...|++++|.++|+.+...+... | -.....+++.+|.+|-..+
T Consensus       158 I~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-g-W~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  158 IELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE-G-WWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHh
Confidence            33444444444322  2277888888999999999999999999999996655543 2 4567778888888776544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PLN02789 farnesyltranstransferase

Probab=81.95  E-value=15  Score=35.81  Aligned_cols=49  Identities=12%  Similarity=0.106  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG  406 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g  406 (456)
                      ..+....+.++..+|+|++|++++.++|..        .|.-...++..+.+..+.|
T Consensus       142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~  190 (320)
T PLN02789        142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSP  190 (320)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhcc
Confidence            455666677777888999999999988864        3444566777777776653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=81.78  E-value=4.7  Score=39.91  Aligned_cols=66  Identities=14%  Similarity=0.013  Sum_probs=50.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h-------p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .=++.|.+.|+|..|...|++++..++...+.+-       -.....+.|||..+..++++.+|+..-.++|+
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            3466788899999999999999998876666321       22334678889999999999888887776665

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.75  E-value=2  Score=28.37  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772          353 REKLIKILMELEDWKEALAYCQLTIP  378 (456)
Q Consensus       353 ~~~L~~~~~~~g~~~~A~~~~~~~l~  378 (456)
                      ...||.+|+.+|+.+.|.+..++++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            35799999999999999999988773

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=81.66  E-value=16  Score=38.64  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=38.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          357 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       357 ~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      ..+.....++++|..++.++-.         .--+...+++-+.+.+.+|+.++|+.++++|++++-
T Consensus       625 vKle~en~e~eraR~llakar~---------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp  682 (913)
T KOG0495|consen  625 VKLEFENDELERARDLLAKARS---------ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFP  682 (913)
T ss_pred             HHHhhccccHHHHHHHHHHHhc---------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            3344455667777777666543         223455677777777888888888888888887653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=81.66  E-value=3.1  Score=28.73  Aligned_cols=43  Identities=21%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  441 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~  441 (456)
                      .+|.||..+..+|+|++|..+.+.++++     -|+++....+...+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHH
Confidence            4788999999999999999999988875     456655555544443

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=81.33  E-value=1.3  Score=31.20  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHh
Q 012772           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLH   63 (456)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H   63 (456)
                      ..+|-.|+++.++-       -.|||++|++..++.+
T Consensus         3 HkHC~~CG~~Ip~~-------~~fCS~~C~~~~~k~q   32 (59)
T PF09889_consen    3 HKHCPVCGKPIPPD-------ESFCSPKCREEYRKRQ   32 (59)
T ss_pred             CCcCCcCCCcCCcc-------hhhhCHHHHHHHHHHH
Confidence            57899999885431       2699999987654433

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5

Probab=81.25  E-value=4.2  Score=36.14  Aligned_cols=47  Identities=13%  Similarity=0.158  Sum_probs=40.3

Q ss_pred             CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ..+..++++.+|..-|..+|+++-|...|+++|.-.++..|..||.+
T Consensus       135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v  181 (181)
T PF09311_consen  135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV  181 (181)
T ss_dssp             TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence            45567888899999999999999999999999999999999999975

This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.21  E-value=13  Score=36.21  Aligned_cols=115  Identities=15%  Similarity=0.112  Sum_probs=71.2

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      +..-|+|++|+..|+-+...       ++. -.+..-+|+..+..+|.|.+|.....++         +..|.--..+++
T Consensus        67 ~fhLgdY~~Al~~Y~~~~~~-------~~~-~~el~vnLAcc~FyLg~Y~eA~~~~~ka---------~k~pL~~RLlfh  129 (557)
T KOG3785|consen   67 YFHLGDYEEALNVYTFLMNK-------DDA-PAELGVNLACCKFYLGQYIEAKSIAEKA---------PKTPLCIRLLFH  129 (557)
T ss_pred             HHhhccHHHHHHHHHHHhcc-------CCC-CcccchhHHHHHHHHHHHHHHHHHHhhC---------CCChHHHHHHHH
Confidence            45678999998888766431       111 1445567899999999999998876654         455555555555


Q ss_pred             HHHH----------HHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Q 012772          398 CGKL----------EWFLGDT----------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  450 (456)
Q Consensus       398 La~~----------~~~~g~~----------~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~~  450 (456)
                      ||--          +..+++.          .=.+.+|++|+++..+.+- ++|.+..+--.++-+...+-|+
T Consensus       130 lahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~-dn~ey~alNVy~ALCyyKlDYy  201 (557)
T KOG3785|consen  130 LAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ-DNPEYIALNVYMALCYYKLDYY  201 (557)
T ss_pred             HHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-cChhhhhhHHHHHHHHHhcchh
Confidence            5421          1122221          1123456677777777654 6677776666777776555553

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=80.92  E-value=0.74  Score=32.22  Aligned_cols=12  Identities=25%  Similarity=0.803  Sum_probs=9.5

Q ss_pred             cccccHHhhhhc
Q 012772           48 VWYCGSNCQKLD   59 (456)
Q Consensus        48 v~yCs~~C~~~~   59 (456)
                      -+|||+.|+..|
T Consensus        21 rPFCS~RCk~iD   32 (57)
T PF03884_consen   21 RPFCSERCKLID   32 (57)
T ss_dssp             -SSSSHHHHHHH
T ss_pred             CCcccHhhcccC
Confidence            379999999765

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]

Probab=80.77  E-value=1.2  Score=46.40  Aligned_cols=38  Identities=29%  Similarity=0.302  Sum_probs=30.3

Q ss_pred             ccccCCCcCCCeeE--E-eC-CEEEEEEecCCCCCCcccCCh
Q 012772          220 SIINHSCLPNAVLV--F-EG-RLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       220 sl~NHSC~PN~~~~--f-~~-~~~~vra~~~I~~Gee~~~~~  257 (456)
                      =+.|||=.|||..-  + .| .+|-+.|.|.|.+|||++|++
T Consensus       667 rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDY  708 (739)
T KOG1079|consen  667 RFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDY  708 (739)
T ss_pred             hhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeee
Confidence            45799999999764  2 23 578899999999999998543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=80.73  E-value=4  Score=28.19  Aligned_cols=28  Identities=18%  Similarity=0.279  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      .++.||..+.++|+|++|.+++..+|.+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~   30 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI   30 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            4677889999999999999999999864

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=80.71  E-value=14  Score=40.97  Aligned_cols=100  Identities=22%  Similarity=0.104  Sum_probs=72.1

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCCCC
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-WKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~-~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ...+.|.......+|++|++..+++++     +.|+|+.   +.--|+.++..+|. .++|.++|..+..        -.
T Consensus         4 ~aLK~Ak~al~nk~YeealEqskkvLk-----~dpdNYn---A~vFLGvAl~sl~q~le~A~ehYv~AaK--------ld   67 (1238)
T KOG1127|consen    4 TALKSAKDALRNKEYEEALEQSKKVLK-----EDPDNYN---AQVFLGVALWSLGQDLEKAAEHYVLAAK--------LD   67 (1238)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHh-----cCCCcch---hhhHHHHHHHhccCCHHHHHHHHHHHHh--------cC
Confidence            344555555556789999998888875     3466644   44568888888876 9999999988774        45


Q ss_pred             hHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHh
Q 012772          389 PLLGLQYYTCGKLEWF---LGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       389 p~~~~~l~~La~~~~~---~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      |.-...+-.|+.+|..   .-.++++-+.|++++.+++..
T Consensus        68 pdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q  107 (1238)
T KOG1127|consen   68 PDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ  107 (1238)
T ss_pred             hhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence            6667777777777765   345677888888887777654

>KOG4317 consensus Predicted Zn-finger protein [Function unknown]

Probab=80.70  E-value=0.61  Score=43.93  Aligned_cols=38  Identities=26%  Similarity=0.711  Sum_probs=30.4

Q ss_pred             CCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhch
Q 012772           26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ   68 (456)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~   68 (456)
                      ....|+-|.....-+.||+|.+ .|||-.|-+    .|+.-|.
T Consensus         6 ~~~~C~ic~vq~~~YtCPRCn~-~YCsl~CYr----~h~~~Cs   43 (383)
T KOG4317|consen    6 SFLACGICGVQKREYTCPRCNL-LYCSLKCYR----NHKHSCS   43 (383)
T ss_pred             ceeeccccccccccccCCCCCc-cceeeeeec----CCCccch
Confidence            4567888888866799999999 799999984    5666683

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=80.12  E-value=68  Score=32.07  Aligned_cols=106  Identities=13%  Similarity=0.151  Sum_probs=67.2

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH--HccCHHHHHHHHHHHH----------------
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM--ELEDWKEALAYCQLTI----------------  377 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~--~~g~~~~A~~~~~~~l----------------  377 (456)
                      ..+..+++|..|.++++.+..   +.+.+........+..|...|.  +.-++++|.++..+.+                
T Consensus       138 r~l~n~~dy~aA~~~~~~L~~---r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~  214 (380)
T TIGR02710       138 RRAINAFDYLFAHARLETLLR---RLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE  214 (380)
T ss_pred             HHHHHhcChHHHHHHHHHHHh---cccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Confidence            345567899999998888864   3555666666777777887765  4668888888887221                


Q ss_pred             ---HHHHHhcCC------------CChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          378 ---PVYQRVYPQ------------FHPLLG--LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       378 ---~~~e~~~g~------------~hp~~~--~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                         .....+.|.            .+|.+.  .-++.-|..-..+|+|+.|...+-+|++++..
T Consensus       215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q  278 (380)
T TIGR02710       215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ  278 (380)
T ss_pred             HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence               111122221            233322  22222244444689999999999999987654

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
3qwv_A	433	Crystal Structure Of Histone Lysine Methyltransfera		9e-31
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		9e-28
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		5e-27
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		6e-27
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		5e-26
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		5e-26
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		5e-26
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		5e-26
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		6e-26
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		2e-19
3n71_A	490	Crystal Structure Of Cardiac Specific Histone Methy		5e-15

>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433

Iteration: 1
 Score =  131 bits (329), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 206/458 (44%), Gaps = 73/458 (15%)
Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85
Query: 63  HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARIL 122
           H+LEC  +  L                          +N  PS T         L ARIL
Sbjct: 86  HKLECSSMVVL-------------------------GENWNPSETV-------RLTARIL 113
Query: 123 FELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID-EKQLLLYAQIANLVNLI--- 178
            +  I   +       + ++ L+       F   +  +D EK+ L+ + IA L       
Sbjct: 114 AKQKIHPER-------TPSEKLLAV---REFESHLDKLDNEKKDLIQSDIAALHQFYSKY 163
Query: 179 LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRL 238
           L++P+ S   +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G L
Sbjct: 164 LEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTL 221
Query: 239 AVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV--- 295
           A VRAVQ +  G     D++  S I   Y  +D       LRDS      C++C      
Sbjct: 222 AEVRAVQEIHPG-----DEVFTSYIDLLYPTED---RNDRLRDSYFFTCECRECTTKDKD 273
Query: 296 RSKEEIKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF- 345
           ++K E++K++S     + + +               +++      ++ E  Q+K+   F 
Sbjct: 274 KAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFE 333
Query: 346 --SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW 403
             +V ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L  
Sbjct: 334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM 393
Query: 404 FLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
            L +     K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 394 GLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score =  121 bits (303), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 200/452 (44%), Gaps = 68/452 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C              +P +              +N  PS T         L ARIL +  
Sbjct: 90  C--------------SPMVVF-----------GENWNPSETV-------RLTARILAKQK 117
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID-EKQLLLYAQIANLVNLILQWPEIS 185
           I   +       + ++ L+       F   +  +D EK+ L+ + IA L +   +  E  
Sbjct: 118 IHPER-------TPSEKLLAV---KEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLEFP 167
Query: 186 INE-IAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
            N+ +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAV
Sbjct: 168 DNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAV 227
Query: 245 QHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKEEI 301
           Q +  G E     +  S I   Y  +D       LRDS      CQ+C      ++K EI
Sbjct: 228 QEIKPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKVEI 279
Query: 302 KKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF---SVNL 349
           +K++      + + +               +++      ++ E  Q+K+   F   +V +
Sbjct: 280 RKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYM 339
Query: 350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTE 409
           +    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L    
Sbjct: 340 LHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKA 399
Query: 410 NAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
              K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 400 AGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 201/454 (44%), Gaps = 72/454 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C              +P +              +N  PS T         L ARIL +  
Sbjct: 90  C--------------SPMVVF-----------GENWNPSETV-------RLTARILAKQK 117
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID-EKQLLLYAQIANLVNLI---LQWP 182
           I   +       + ++ L+       F   +  +D EK+ L+ + IA L +     L +P
Sbjct: 118 IHPER-------TPSEKLLAV---KEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFP 167
Query: 183 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 242
           +   + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VR
Sbjct: 168 DN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVR 225
Query: 243 AVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKE 299
           AVQ +  G E     +  S I   Y  +D       LRDS      CQ+C      ++K 
Sbjct: 226 AVQEIKPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKV 277
Query: 300 EIKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF---SV 347
           EI+K++      + + +               +++      ++ E  Q+K+   F   +V
Sbjct: 278 EIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV 337
Query: 348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 407
            ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L  
Sbjct: 338 YMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEH 397
Query: 408 TENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
                K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 398 KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score =  118 bits (296), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 201/454 (44%), Gaps = 72/454 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C              +P +              +N  PS T         L ARIL +  
Sbjct: 90  C--------------SPMVVF-----------GENWNPSETV-------RLTARILAKQK 117
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID-EKQLLLYAQIANLVNLI---LQWP 182
           I   +       + ++ L+       F   +  +D EK+ L+ + IA L +     L +P
Sbjct: 118 IHPER-------TPSEKLLAV---KEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLGFP 167
Query: 183 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 242
           +   + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VR
Sbjct: 168 DN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVR 225
Query: 243 AVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLV---RSKE 299
           AVQ +  G E     +  S I   Y  +D       LRDS      CQ+C      ++K 
Sbjct: 226 AVQEIKPGEE-----VFTSYIDLLYPTED---RNDRLRDSYFFTCECQECTTKDKDKAKV 277
Query: 300 EIKKIASEVNILSKKTLA---------LTSCGNHQEVVSTYKMIEKLQKKLYHPF---SV 347
           EI+K++      + + +               +++      ++ E  Q+K+   F   +V
Sbjct: 278 EIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV 337
Query: 348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 407
            ++    + + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L  
Sbjct: 338 YMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEH 397
Query: 408 TENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
                K++ +A+ I+ + HG + P++ E+  ++E
Sbjct: 398 KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 65/432 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 27  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C+ L        KS  P                    P +          L+ R++F+L+
Sbjct: 87  CKCL--------KSCKPRYP-----------------PDSVR--------LLGRVVFKLM 113
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
                    L   Y+   + + +N L       +  +QL++  Q  +   +    Q P  
Sbjct: 114 DGAPSESEKLYSFYD---LESNINKLTEDRKEGL--RQLVMTFQHFMREEIQDASQLP-- 166
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
              ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV
Sbjct: 167 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 226
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
           + +  G E    + D+     +    L    C +  C     +D D    T  +      
Sbjct: 227 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 286
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
           +E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  + 
Sbjct: 287 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 333
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
            +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++
Sbjct: 334 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 393
Query: 416 TEAVEILRITHG 427
             A +I+R+THG
Sbjct: 394 RLAFDIMRVTHG 405

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 65/432 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 28  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C+ L        KS  P                    P +          L+ R++F+L+
Sbjct: 88  CKCL--------KSCKPRYP-----------------PDSVR--------LLGRVVFKLM 114
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
                    L   Y+   + + +N L       +  +QL++  Q  +   +    Q P  
Sbjct: 115 DGAPSESEKLYSFYD---LESNINKLTEDRKEGL--RQLVMTFQHFMREEIQDASQLP-- 167
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
              ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV
Sbjct: 168 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 227
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
           + +  G E    + D+     +    L    C +  C     +D D    T  +      
Sbjct: 228 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 287
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
           +E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  + 
Sbjct: 288 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 334
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
            +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++
Sbjct: 335 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 394
Query: 416 TEAVEILRITHG 427
             A +I+R+THG
Sbjct: 395 RLAFDIMRVTHG 406

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 65/432 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 29  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 88
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C+ L        KS  P                    P +          L+ R++F+L+
Sbjct: 89  CKCL--------KSCKPRYP-----------------PDSVR--------LLGRVVFKLM 115
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
                    L   Y+   + + +N L       +  +QL++  Q  +   +    Q P  
Sbjct: 116 DGAPSESEKLYSFYD---LESNINKLTEDKKEGL--RQLVMTFQHFMREEIQDASQLP-- 168
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
              ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV
Sbjct: 169 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 228
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
           + +  G E    + D+     +    L    C +  C     +D D    T  +      
Sbjct: 229 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 288
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
           +E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  + 
Sbjct: 289 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 335
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
            +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++
Sbjct: 336 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 395
Query: 416 TEAVEILRITHG 427
             A +I+R+THG
Sbjct: 396 RLAFDIMRVTHG 407

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 65/432 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 27  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C+ L        KS  P                    P +          L+ R++F+L+
Sbjct: 87  CKCL--------KSCKPRYP-----------------PDSVR--------LLGRVVFKLM 113
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
                    L   Y+   + + +N L       +  +QL++  Q  +   +    Q P  
Sbjct: 114 DGAPSESEKLYSFYD---LESNINKLTEDRKEGL--RQLVMTFQHFMREEIQDASQLP-- 166
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
              ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV
Sbjct: 167 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 226
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
           + +  G E    + D+     +    L    C +  C     +D D    T  +      
Sbjct: 227 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 286
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
           +E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  + 
Sbjct: 287 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 333
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
            +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++
Sbjct: 334 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 393
Query: 416 TEAVEILRITHG 427
             A +I+R+THG
Sbjct: 394 RLAFDIMRVTHG 405

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 188/432 (43%), Gaps = 65/432 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 63  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 122
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C+ L        KS  P                D+V              L+ R++F+L+
Sbjct: 123 CKCL--------KSCKPRYPP------------DSV-------------RLLGRVVFKLM 149
Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQ--IANLVNLILQWPEI 184
                    L   Y+   + + +N L       +  +QL++  Q  +   +    Q P  
Sbjct: 150 DGAPSESEKLYSFYD---LESNINKLTEDRKEGL--RQLVMTFQHFMREEIQDASQLP-- 202
Query: 185 SINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAV 244
              ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV
Sbjct: 203 PAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAV 262
Query: 245 QHVPKGAEGQ--FDDI-----QESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 297
           + +  G E    + D+     +    L    C +  C     +D D    T  +      
Sbjct: 263 RDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEV 322
Query: 298 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 355
           +E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  + 
Sbjct: 323 QESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDC 369
Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
            +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++
Sbjct: 370 AMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNL 429
Query: 416 TEAVEILRITHG 427
             A +I+R+THG
Sbjct: 430 RLAFDIMRVTHG 441

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 188 EIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHV 247
           ++ E F+K+ CN+ TICN+E + +G GLYP IS++NHSC PN  +VF G   ++RAV+ +
Sbjct: 171 DLFEAFAKVICNSFTICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDI 230
Query: 248 PKGAE---GQFDDIQES----AILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEE 300
             G E      D +  S      L    C +  C     +D D    T  +      +E 
Sbjct: 231 EVGEELTICYLDXLXTSEERRKQLRDQYCFECDCFRCQTQDKDADXLTGDEQVWKEVQES 290
Query: 301 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIK 358
           +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  +    
Sbjct: 291 LKKI-EELKAHWKWEQVLAXC---QAIISSNS--ERLP-------DINIYQLKVLDCAXD 337
Query: 359 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEA 418
             + L   +EAL Y   T   Y+  +P  HP+ G+Q    GKL+   G    A K++  A
Sbjct: 338 ACINLGLLEEALFYGTRTXEPYRIFFPGSHPVRGVQVXKVGKLQLHQGXFPQAXKNLRLA 397
Query: 419 VEILRITHG 427
            +I R+THG
Sbjct: 398 FDIXRVTHG 406

>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 102/462 (22%), Positives = 188/462 (40%), Gaps = 85/462 (18%)
Query: 7   SGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRL 65
           + +VI ++  Y  V  +S     C  CF     L +C  C+   YC   CQK  W  H+ 
Sbjct: 29  AADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN 88
Query: 66  ECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVARILFEL 125
           EC  + +  K       P               N+N+              L ARI++  
Sbjct: 89  ECAAIKKYGK------VP---------------NENI-------------RLAARIMWR- 113
Query: 126 IIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWP--- 182
            +     GL      +   +   V + FG++    ++K+L +     ++   +  WP   
Sbjct: 114 -VEREGTGLTEGCLVSVDDLQNHVEH-FGEE----EQKELRV-----DVDTFLQYWPPQS 162
Query: 183 -EISINEIAENFSKLACNAHTICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFE-GRLA 239
            + S+  I+  F  + CN  T+ +   L+ +G G++P + ++NH C PN  ++F  G   
Sbjct: 163 QQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHE 222
Query: 240 VVRAVQHVPKGAE----GQFDDIQESAI-------LEGYRCKDDGCSGFLLRDSDDKGFT 288
            V+++ H     E    G+  + +E  +       L   R +        L+       +
Sbjct: 223 AVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQ-------LKKQYYFDCS 275
Query: 289 CQQC--GL-----VRSKEEIK---KIASEVNILSKKTL----ALTSCGNHQEVVSTYKMI 334
           C+ C  GL     + +KE+ K   ++  E+   SK TL       S G + EVV   +  
Sbjct: 276 CEHCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCREC 335
Query: 335 EKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ 394
            + Q+ ++   ++ +++      ++L  L+ ++EA  Y +  +  Y ++Y   +  LG+ 
Sbjct: 336 LEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395
Query: 395 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL 436
               G   W  G  E     + +A  IL +THG + P  K+L
Sbjct: 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL 437

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	2e-78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-72
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	3e-67
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	4e-14
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	4e-14
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	1e-13
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	1e-12
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-04

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score =  249 bits (637), Expect = 2e-78
 Identities = 94/447 (21%), Positives = 191/447 (42%), Gaps = 56/447 (12%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW LH+LE
Sbjct: 30  GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C  +  L +      + ++RL  ++  ++K+  +     T ++    V    + +     
Sbjct: 90  CSSMVVLGENWNP--SETVRLTARILAKQKIHPER----TPSEKLLAVREFESHL----- 138

Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPE-IS 185
                                             +EK+ L+ + IA L     ++ E   
Sbjct: 139 ------------------------------DKLDNEKKDLIQSDIAALHQFYSKYLEFPD 168

Query: 186 INEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQ 245
            + +   F+++ CN  TI + EL  LG+ ++P ++++NHSC PN ++ ++G LA VRAVQ
Sbjct: 169 HSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQ 228

Query: 246 HVPKGAE------GQFDDIQE--SAILEGYR--CKDDGCSGFLLRDSDDKGFTCQQCGLV 295
            +  G E            ++    + + Y   C+   C+    +D D      ++    
Sbjct: 229 EIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECT---TKDKDKAKVEVRKLSSP 285

Query: 296 RSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK 355
              E I+ +      + ++        +  E++   ++ ++    ++   +V ++    +
Sbjct: 286 PQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQ 345

Query: 356 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 415
            + + + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L +     K++
Sbjct: 346 AMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKAL 405

Query: 416 TEAVEILRITHGTNSPFMKELILKLEE 442
            +A+ I+ + HG + P++ E+  ++E 
Sbjct: 406 KKAIAIMEVAHGKDHPYISEIKQEIES 432

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score =  234 bits (597), Expect = 2e-72
 Identities = 105/449 (23%), Positives = 181/449 (40%), Gaps = 61/449 (13%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 28  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C+ L      K +    S+RL+ ++  +           + ++       L + I     
Sbjct: 88  CKCLKSC---KPRYPPDSVRLLGRVVFKLMDGAP-----SESEKLYSFYDLESNINKLTE 139

Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISI 186
                             +     +   +++ D                           
Sbjct: 140 DRKEGL----------RQLVMTFQHFMREEIQD--------------------ASQLPPA 169

Query: 187 NEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQH 246
            ++ E F+K+ CN+ TICN+E++ +G GLYP IS++NHSC PN  +VF G   ++RAV+ 
Sbjct: 170 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 229

Query: 247 VPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDS---DDKGFTCQ--QCGLVRSKEEI 301
           +  G E          +   Y    D       R     D   F C   +C       ++
Sbjct: 230 IEVGEE----------LTICYL---DMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADM 276

Query: 302 ----KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLI 357
               +++  EV    KK   L +    ++V++  + I     +     ++  ++  +  +
Sbjct: 277 LTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAM 336

Query: 358 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE 417
              + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++  
Sbjct: 337 DACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396

Query: 418 AVEILRITHGTNSPFMKELILKLEEAQAE 446
           A +I+R+THG     +++LIL LEE  A 
Sbjct: 397 AFDIMRVTHGREHSLIEDLILLLEECDAN 425

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score =  222 bits (566), Expect = 3e-67
 Identities = 88/464 (18%), Positives = 170/464 (36%), Gaps = 71/464 (15%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
            +VI ++  Y  V  +S     C  CF     L +C  C+   YC   CQK  W  H+ E
Sbjct: 30  ADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELI 126
           C  + +  K   +++  + R+M ++        +  +                  + +L 
Sbjct: 90  CAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCL----------------VSVDDLQ 133

Query: 127 IWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLVNLILQWPEISI 186
                F                            +E++ L       L     Q  + S+
Sbjct: 134 NHVEHF--------------------------GEEEQKELRVDVDTFLQYWPPQSQQFSM 167

Query: 187 NEIAENFSKLACNAHTICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFEGRL------- 238
             I+  F  + CN  T+ +   L+ +G G++P + ++NH C PN  ++F           
Sbjct: 168 QYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSM 227

Query: 239 ------AVVRAVQHVPKGAE------GQFDDIQE--SAILEGY--RCKDDGCSGFLLRDS 282
                   +RA+  + +G E            +E    + + Y   C  + C     +  
Sbjct: 228 FHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQ----KGL 283

Query: 283 DDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY 342
            D  F   +     S+E +K++        +K     S G + EVV   +   + Q+ ++
Sbjct: 284 KDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVF 343

Query: 343 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 402
              ++ +++      ++L  L+ ++EA  Y +  +  Y ++Y   +  LG+     G   
Sbjct: 344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN 403

Query: 403 WFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 446
           W  G  E     + +A  IL +THG + P  K+L     + + E
Sbjct: 404 WHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 65.7 bits (160), Expect = 4e-14
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 22 NNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
           NS S   C  C   +  + CS C    YCGS CQ  DW+ H   C 
Sbjct: 8  PNSDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICG 53

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 66.2 bits (161), Expect = 4e-14
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 NNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKS 80
            +    RC  C A +  K+CS CQ  WYC   CQ   W+ H   C + ++ D+ K   
Sbjct: 10 AVAPERPRCAYCSAEA-SKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQGDRAKSGP 67

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 64.6 bits (157), Expect = 1e-13
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 20 VPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71
          +     S   C  C   +  + CS C    YCGS CQ  DW+ H   C   S
Sbjct: 8  INQQEDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICSGPS 58

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 61.5 bits (149), Expect = 1e-12
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 21 PNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
               S   C  C   +  + CS C    YCGS CQ  DW+ H   C 
Sbjct: 11 YFQGDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICG 57

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 60.2 bits (146), Expect = 3e-12
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
           C  C   + + +C+ C  V YC + CQ+ DWK H+  C 
Sbjct: 11 SCVNCGREA-MSECTGCHKVNYCSTFCQRKDWKDHQHICG 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 63/474 (13%), Positives = 145/474 (30%), Gaps = 120/474 (25%)

Query: 36  SSNLKKCSACQVVWYCGSNCQKLD------WKL-HRLECQVLSRLDKEKRKSVTPSIRL- 87
           S  ++     ++ W    NC   +       KL ++++    SR D     S    +R+ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIH 228

Query: 88  MLKLYLRRKLQN----------DNV-IPST------------TTDNYSLVEALVARILFE 124
            ++  LRR L++           NV                 TT    + + L A     
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 125 LIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANLV-NLILQWPE 183
           + +  +   L       KSL+  +++        ++        + IA  + + +  W  
Sbjct: 289 ISLDHHSMTLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-- 344

Query: 184 ISINEIAENFSKLACNAHT----ICNSELRPLGT-GLYPVISIINHSCLPNAVLVFEGRL 238
                  +N+  + C+  T       + L P     ++  +S+      P +  +    L
Sbjct: 345 -------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILL 392

Query: 239 AVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 298
           +++          +    D+             +    + L +   K  T          
Sbjct: 393 SLI--------WFDVIKSDVMVVV---------NKLHKYSLVEKQPKESTI--------- 426

Query: 299 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK---------------LYH 343
             I  I  E+ +  +   AL     H+ +V  Y + +                     +H
Sbjct: 427 -SIPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 344 PFSVNLMQTREKLIKILMELEDWKEA-LAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE 402
             ++   +       + ++   + E  + +       +       + L  L++Y     +
Sbjct: 481 LKNIEHPERMTLFRMVFLDF-RFLEQKIRH---DSTAWNASGSILNTLQQLKFY-----K 531

Query: 403 WFLGDTENAIKSMTEAVEILRITHGTN---SPFMKELILKL---EEAQAEASYK 450
            ++ D +   + +  A+         N   S +   L + L   +EA  E ++K
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 59/406 (14%), Positives = 129/406 (31%), Gaps = 109/406 (26%)

Query: 11  IISQEPY---VCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQK-LDWKLHRLE 66
           I+S+E     +   +  S   R      S   +      V  +     +    +      
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEVLRINYKF------ 93

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVA--RILFE 124
             ++S +  E+R+   PS+   + +  R +L NDN        N S ++  +   + L E
Sbjct: 94  --LMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQALLE 146

Query: 125 L-----IIWFNQFG-----LVLCFSYNKSLMPAFVNNLFGKDMSDIDEKQLLLYAQIANL 174
           L     ++     G     + L    +  +       +F  ++ + +  + +L      L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL----EML 202

Query: 175 VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVF 234
             L+ Q  + +    +++ S +    H+I  +ELR L          +      N +LV 
Sbjct: 203 QKLLYQI-DPNWTSRSDHSSNIKLRIHSI-QAELRRL----------LKSKPYENCLLV- 249

Query: 235 EGRLAVVRAVQHVPKGAEGQFDDIQESAILEGY--RCK------DDGCSGFLLR------ 280
                                 ++Q +     +   CK          + FL        
Sbjct: 250 --------------------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 281 --DSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMI-EKL 337
             D      T          +E+K +  +      + L       +   +S   +I E +
Sbjct: 290 SLDHHSMTLT---------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESI 337

Query: 338 QKKL-----Y-HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 377
           +  L     + H     L    E  + +L E  ++++   + +L++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRK--MFDRLSV 380

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 59/346 (17%), Positives = 108/346 (31%), Gaps = 92/346 (26%)

Query: 138 FSYNKSL---MPAFVNNLFGKDMSDIDEKQLLLYAQIANLVN-------------LILQW 181
           + Y   L     AFV+N   KD+ D+  K +L   +I +++               +L  
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 182 PEISINEIAE-----NFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEG 236
            E  + +  E     N+  L     T        + T +Y    I     L N   VF  
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMY----IEQRDRLYNDNQVFAK 128

Query: 237 RLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGCSGFLLRDSDD------KGF--T 288
                    +V +     +  +++ A+LE             LR + +       G   T
Sbjct: 129 Y--------NVSR--LQPYLKLRQ-ALLE-------------LRPAKNVLIDGVLGSGKT 164

Query: 289 CQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN 348
                +  S +   K+  ++  L+     L +C + + V      +E LQK L +    N
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETV------LEMLQK-LLYQIDPN 212

Query: 349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKLEWF--- 404
                +    I + +   +  L           + Y   + LL L           F   
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLK-----SKPYE--NCLLVLLNVQNAKAWNAFNLS 265

Query: 405 ---LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 447
              L  T    K +T+ +     TH      +    + L   + ++
Sbjct: 266 CKILLTTRF--KQVTDFLSAATTTH----ISLDHHSMTLTPDEVKS 305

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 2/134 (1%)

Query: 311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEAL 370
            S     L   G     ++  +  E++ ++         + +  +  +IL      + A 
Sbjct: 56  TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA--LWSLIQQSEILFAQGFLQTAW 113

Query: 371 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 430
              +    +    + +  P+         +L W     + A  S    +E+L        
Sbjct: 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173

Query: 431 PFMKELILKLEEAQ 444
                ++++   A+
Sbjct: 174 LQCLAMLIQCSLAR 187

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ 381
            +  + V  Y+    + +           +   K  ++L+  + + EA A  Q    +Y+
Sbjct: 129 LDLSKAVHLYQQAAAVFENEERLRQAA--ELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186

Query: 382 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE 441
            +  + +P    +      ++    D   A K + E+  I   +   +   +++L+   +
Sbjct: 187 EM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYD 244

Query: 442 EAQAEA 447
           E   E 
Sbjct: 245 EQDEEQ 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	100.0
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	100.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	100.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.55
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.43
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	99.4
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.33
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.33
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	99.31
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.29
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.29
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.28
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	99.19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.09
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	99.02
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.01
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.01
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.94
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.93
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.89
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.88
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	98.87
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	98.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.8
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.79
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	98.78
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.78
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.77
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.77
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.75
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.75
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	98.74
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.74
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.73
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.73
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	98.71
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.71
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.7
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.68
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.68
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.68
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	98.67
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.65
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.63
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.61
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.61
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.6
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.6
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.58
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.58
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	98.58
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	98.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.57
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.55
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.52
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.5
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.5
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.48
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	98.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.46
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.44
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	98.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.42
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	98.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.39
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	98.38
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	98.37
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.37
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.36
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.34
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.33
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.3
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	98.3
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.28
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.28
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.28
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	98.27
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.25
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	98.25
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.25
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.25
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.23
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	98.22
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.2
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.2
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.19
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.18
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.17
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.12
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	98.11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.1
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.1
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.09
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.04
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.03
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.02
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.02
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.01
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.01
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.98
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.93
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.93
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.92
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.92
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.91
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.9
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.89
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.88
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.86
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.85
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.83
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.83
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.82
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.73
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.72
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.69
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.69
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.69
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.68
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.67
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.65
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.64
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.64
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.6
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.52
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.5
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.49
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.47
2h21_A	440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	97.45
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.36
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.35
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.34
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.3
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.18
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.01
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.86
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.86
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.77
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.77
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.75
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.74
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	96.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.59
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.49
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	96.47
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.45
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	96.04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.82
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.8
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.8
3ihx_A	152	PR domain zinc finger protein 10; PRDM10, methyltr	95.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	95.6
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	95.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.48
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	95.44
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.36
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.3
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.14
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	95.11
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.95
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	94.89
3ray_A	237	PR domain-containing protein 11; structural genomi	94.84
2o8p_A	227	14-3-3 domain containing protein; signaling protei	94.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.51
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.23
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	93.68
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	93.41
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.24
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.2
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.2
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	92.83
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	92.63
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.5
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.24
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.45
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	91.44
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	91.07
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	90.35
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	89.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	88.97
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	88.97
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	88.81
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.72
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	88.36
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	88.21
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	87.69
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	87.45
2npm_A	260	14-3-3 domain containing protein; cell regulator p	87.36
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.03
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	86.91
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	86.18
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.6
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	85.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	85.16
2o8p_A	227	14-3-3 domain containing protein; signaling protei	84.17
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	84.01
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	82.56
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.19
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.93
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.7
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	81.49
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	81.2
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	81.07
1lv3_A	68	Hypothetical protein YACG; zinc finger, rubredoxin	80.53
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	80.51
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.22

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=100.00  E-value=3.9e-72  Score=574.18  Aligned_cols=401  Identities=22%  Similarity=0.374  Sum_probs=337.1

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCcCcCCC-CCCccCcCCCCcccccHHhhhhcHHHhHHhchhhHhchhhhccCC
Q 012772            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (456)
Q Consensus         3 ~~i~~G~vil~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~~l~~~~~~~~   81 (456)
                      .+|++||+|+.|+|+++++.......+|++|++. .++.+|++|++++|||++||+.+|++|+.||+.++.+..    .+
T Consensus        25 r~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~~----~p  100 (490)
T 3n71_A           25 KEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGK----VP  100 (490)
T ss_dssp             SCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHHHTS----CC
T ss_pred             cCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHhcCc----CC
Confidence            4899999999999999998888889999999997 578999999999999999999999999999999998752    45


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHhhhHHHHHHhhhcccchhhhcccCCcchhhhhcccCCCCCccc
Q 012772           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID  161 (456)
Q Consensus        82 ~~~~~l~~R~l~~~~~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (456)
                      +..+|+++|+|++.....+..    ..+.+..+..|++|.+                                    ++.
T Consensus       101 ~~~~rl~lRiL~~~~~~~~~~----~~~~~~~~~~L~sh~~------------------------------------~~~  140 (490)
T 3n71_A          101 NENIRLAARIMWRVEREGTGL----TEGCLVSVDDLQNHVE------------------------------------HFG  140 (490)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSB----CTTCSSBGGGSCCCGG------------------------------------GCC
T ss_pred             CHHHHHHHHHHHHhhccCccC----cchhhhHHHHHHhhhh------------------------------------hcC
Confidence            678999999998765433221    2233555677888832                                    111


Q ss_pred             HHHHHHH-HHHHHHHHHhhc-CCCCCHHHHHHHHhhHhccccccccCC-CCcceeeeccccccccCCCcCCCeeEEeCC-
Q 012772          162 EKQLLLY-AQIANLVNLILQ-WPEISINEIAENFSKLACNAHTICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFEGR-  237 (456)
Q Consensus       162 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~N~~~i~~~~-~~~~g~glyp~~sl~NHSC~PN~~~~f~~~-  237 (456)
                      +++...+ ..+..+++.+.. ...++.++|..+++++.+|+|+|.+.+ ...+|.||||.+|+|||||.||+.++|+++ 
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~N~f~i~~~~g~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~  220 (490)
T 3n71_A          141 EEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGN  220 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSCCCCHHHHHHHHHHHHTTEEEEECTTSCSEEEEEECTTGGGCEECSSCSEEEEEECCC
T ss_pred             chHHHHHHHHHHHHHHHccccccCCCHHHHHHHHHHHhccCcccccCCCCccceEEEchhhhhcccCCCCCeeEEecCCc
Confidence            1221111 223444443221 236789999999999999999999876 578999999999999999999999999987 


Q ss_pred             ------------EEEEEEecCCCCCCccc--CCh------hhHHHhhC--CccccCCCCCCCcccCCCCCCeeeccCCCc
Q 012772          238 ------------LAVVRAVQHVPKGAEGQ--FDD------IQESAILE--GYRCKDDGCSGFLLRDSDDKGFTCQQCGLV  295 (456)
Q Consensus       238 ------------~~~vra~~~I~~Gee~~--~~~------~r~~~l~~--~f~C~C~~C~~~~~~~~~~~~~~C~~C~~~  295 (456)
                                  +++|+|+|+|++|||||  |.+      .||+.|.+  +|.|.|.+|......+ ....+   +++..
T Consensus       221 ~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~-~~~~~---~~~~~  296 (490)
T 3n71_A          221 HEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDD-LFLAA---KEDPK  296 (490)
T ss_dssp             CSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCSCSCHHHHHHHHHHHHSSCCCCHHHHHTTTHH-HHTCB---CSSSC
T ss_pred             cccccccccccceEEEEECCCCCCCCEEEEeecCCCCCHHHHHHHHHCCCCeEeeCCCCCCCCccc-chhhc---ccCCC
Confidence                        99999999999999987  443      37777864  8999999998543110 00122   23345


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 012772          296 RSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL  375 (456)
Q Consensus       296 ~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~  375 (456)
                      .+.+.+..++..+..+++++..+..+|+|++|+.++++++++++++|||+|+.++.++++|+.+|..+|+|++|+.++++
T Consensus       297 ~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~  376 (490)
T 3n71_A          297 PSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR  376 (490)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            67888999888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 012772          376 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL  451 (456)
Q Consensus       376 ~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~~~  451 (456)
                      +|++++++||++||.+|..+++||.+|..+|++++|+.+|++|++|+++++|++||.|++++.+|++++.|+..++
T Consensus       377 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998776533

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=100.00  E-value=1.1e-71  Score=562.37  Aligned_cols=393  Identities=23%  Similarity=0.465  Sum_probs=324.1

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCcCcCCC-CCCccCcCCCCcccccHHhhhhcHHHhHHhchhhHhchhhhccCC
Q 012772            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (456)
Q Consensus         3 ~~i~~G~vil~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~~l~~~~~~~~   81 (456)
                      .+|++||+|+.|+|+++++.......+|++|+++ .++.+|++|++++|||++||+.+|++|+.||+.++.+.+.  +.+
T Consensus        25 r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~~~~~--~~p  102 (433)
T 3qww_A           25 RPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGEN--WNP  102 (433)
T ss_dssp             SCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHHSSTT--CCC
T ss_pred             CCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHHhCcc--CCC
Confidence            4799999999999999999888889999999998 5789999999999999999999999999999999987643  235


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHhhhHHHHHHhhhcccchhhhcccCCcchhhhhcccCCCCCccc
Q 012772           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID  161 (456)
Q Consensus        82 ~~~~~l~~R~l~~~~~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (456)
                      +..+++++|+|++.....+.    +..+.+..+..|++|.+                                    +..
T Consensus       103 ~~~~rl~~Ril~~~~~~~~~----~~~~~~~~~~~L~sh~~------------------------------------~~~  142 (433)
T 3qww_A          103 SETVRLTARILAKQKIHPER----TPSEKLLAVREFESHLD------------------------------------KLD  142 (433)
T ss_dssp             CHHHHHHHHHHHHHHHCCSC----CGGGSSCCGGGCCCCGG------------------------------------GCC
T ss_pred             cHHHHHHHHHHHHhhhcccc----CchhhhhhHHHHHhhhh------------------------------------ccC
Confidence            66789999999886543321    11223444566777731                                    111


Q ss_pred             HHHHHHH-HHHHHHHHHhhcC-CCCCHHHHHHHHhhHhccccccccCCCCcceeeeccccccccCCCcCCCeeEEeCCEE
Q 012772          162 EKQLLLY-AQIANLVNLILQW-PEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLA  239 (456)
Q Consensus       162 ~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~N~~~i~~~~~~~~g~glyp~~sl~NHSC~PN~~~~f~~~~~  239 (456)
                      +++...+ ..+..+...+... ..++.++|..+++++.+|+|+|.+.+...+|.||||.+|+|||||.||+.+.|+|+++
T Consensus       143 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~N~f~i~~~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~  222 (433)
T 3qww_A          143 NEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLA  222 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHHCEEEECTTCCEEEEEECTTGGGSEECSSCSEEEEEETTEE
T ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHcCCceecccCCccceeEEecccccccCCCCCCCceEEEcCCEE
Confidence            1111111 1122222222221 3458899999999999999999998888999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCccc--CCh------hhHHHhhC--CccccCCCCCCCcccCCCCCCeeecc--CCCcCCHHHHHHHHHH
Q 012772          240 VVRAVQHVPKGAEGQ--FDD------IQESAILE--GYRCKDDGCSGFLLRDSDDKGFTCQQ--CGLVRSKEEIKKIASE  307 (456)
Q Consensus       240 ~vra~~~I~~Gee~~--~~~------~r~~~l~~--~f~C~C~~C~~~~~~~~~~~~~~C~~--C~~~~~~~~~~~~~~~  307 (456)
                      +|||+++|++|||||  |.+      .||+.|++  +|.|.|.+|..+..     +...|..  |+.....+++..+...
T Consensus       223 ~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~-----d~~~~~~~~~~~~~~~e~v~~~~~~  297 (433)
T 3qww_A          223 EVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKDK-----DKAKVEVRKLSSPPQAEAIRDMVRY  297 (433)
T ss_dssp             EEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHHSCCCCSHHHHHCTT-----HHHHTCBCCCSSCCCHHHHHHHHHH
T ss_pred             EEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcCCEEeECCCCCCCCc-----chhhhhhhhcCCCccHHHHHHHHHH
Confidence            999999999999986  543      26777764  89999999985321     1122222  3444567777777666


Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      ....+++......+|+|++|+.++++++++++++|||+|+.++.++++|+.+|..+|+|++|+.+++++|++++++||++
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  377 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY  377 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            66777777767778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  442 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~  442 (456)
                      ||.+|..+++||.+|..+|++++|+++|++|++|+++++|++||.|+++..+|++
T Consensus       378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~  432 (433)
T 3qww_A          378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES  432 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999998863

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=100.00  E-value=2.3e-70  Score=553.83  Aligned_cols=388  Identities=26%  Similarity=0.441  Sum_probs=317.7

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCcCcCCC-CCCccCcCCCCcccccHHhhhhcHHHhHHhchhhHhchhhhccCC
Q 012772            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (456)
Q Consensus         3 ~~i~~G~vil~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~~l~~~~~~~~   81 (456)
                      .+|++||+|+.|+|++.++.......+|++|+++ .++.+|++|++++|||++||+.+|+.|+.||+.++.+.+   +++
T Consensus        23 r~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~~---~~~   99 (429)
T 3qwp_A           23 TPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKP---RYP   99 (429)
T ss_dssp             SCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHHTTT---CCC
T ss_pred             CCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHhcCc---cCC
Confidence            4899999999999999999988889999999987 578999999999999999999999999999999998754   245


Q ss_pred             ChHHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHhhhHHHHHHhhhcccchhhhcccCCcchhhhhcccCCCCCccc
Q 012772           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVARILFELIIWFNQFGLVLCFSYNKSLMPAFVNNLFGKDMSDID  161 (456)
Q Consensus        82 ~~~~~l~~R~l~~~~~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (456)
                      ...+++++|++++.....    + +..+.|..+..|++|.+                                    +++
T Consensus       100 ~~~~rl~~rill~~~~~~----~-~~~~~~~~~~~L~sh~~------------------------------------~~~  138 (429)
T 3qwp_A          100 PDSVRLLGRVVFKLMDGA----P-SESEKLYSFYDLESNIN------------------------------------KLT  138 (429)
T ss_dssp             CHHHHHHHHHHHHHHHSC----C-CGGGSSSCGGGCCCCGG------------------------------------GCC
T ss_pred             ChHHHHHHHHHHHHhcCC----C-CchhhhhhHHHHhhChh------------------------------------hcC
Confidence            677899999998754211    1 22234555677777731                                    112


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC------CCCHHHHHHHHhhHhccccccccCCCCcceeeeccccccccCCCcCCCeeEEe
Q 012772          162 EKQLLLYAQIANLVNLILQWP------EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE  235 (456)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~N~~~i~~~~~~~~g~glyp~~sl~NHSC~PN~~~~f~  235 (456)
                      +++...+..+...+..++...      ..+.+++..+++++.+|+|+|.+.+...+|.||||.+|+|||||.||+.++|+
T Consensus       139 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~N~f~i~~~~~~~~g~~l~~~~s~~NHsC~PN~~~~~~  218 (429)
T 3qwp_A          139 EDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFN  218 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCCSGGGSCTTCCHHHHHHHHHHHCEEEECTTSCEEEEEECTTGGGCEECSSCSEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHHHhcCccccccccccceEEEchhhHhhCcCCCCCeEEEEe
Confidence            222222222222233333211      23456889999999999999999888899999999999999999999999999


Q ss_pred             CCEEEEEEecCCCCCCccc--CCh------hhHHHhhC--CccccCCCCCCCcccCCCCCCeeeccCCCcCCHHHHHHHH
Q 012772          236 GRLAVVRAVQHVPKGAEGQ--FDD------IQESAILE--GYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA  305 (456)
Q Consensus       236 ~~~~~vra~~~I~~Gee~~--~~~------~r~~~l~~--~f~C~C~~C~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~  305 (456)
                      |++++|||+|||++|||||  |.+      .||+.|.+  +|.|.|++|..+.....-.          ..+..    ..
T Consensus       219 ~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~----------~~~~~----~~  284 (429)
T 3qwp_A          219 GPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADML----------TGDEQ----VW  284 (429)
T ss_dssp             TTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHHHHHHCCCCCSHHHHHTTTHHHHT----------CSCHH----HH
T ss_pred             CCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHHhccCCeEeeCCCCCCCccccccc----------ccchh----hh
Confidence            9999999999999999987  443      37778864  7999999998542110000          00111    11


Q ss_pred             HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772          306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  385 (456)
Q Consensus       306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g  385 (456)
                      ..++++......+..+|+|++|++++++++++++++|||+|+.++.++++|+.+|..+|+|++|+.+++++|++++++||
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg  364 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP  364 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence            22344555556677899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                      ++||.+|.++++||.+|..+|++++|+++|++|++|+++++|++||.|++++.+|++++.|+.
T Consensus       365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.55  E-value=3e-14  Score=145.57  Aligned_cols=112  Identities=13%  Similarity=-0.071  Sum_probs=106.4

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      .++...|..+..+|+|++|+.++++++++++++|||+||.++.++++||.+|..+|+|++|+.+++++++++++++|++|
T Consensus       352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H  431 (490)
T 3n71_A          352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH  431 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34456677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      |.++..+..|+.++..+|++++|+.+|++|.+
T Consensus       432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.43  E-value=6.5e-12  Score=117.10  Aligned_cols=138  Identities=17%  Similarity=0.180  Sum_probs=128.7

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++.+.++.++++++....++..++.+|..+|++++|++++++++.+++...++++|
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  124 (283)
T 3edt_B           45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP  124 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            34456667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      ..+..++++|.++..+|++++|+.++++|+++.+...|+++|....+...|+.+....
T Consensus       125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (283)
T 3edt_B          125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ  182 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999988888876543

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=99.40  E-value=6.4e-14  Score=101.27  Aligned_cols=57  Identities=33%  Similarity=0.648  Sum_probs=40.7

Q ss_pred             CCCCCCeEEEeCCceeecCCCCCCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchhh
Q 012772            4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL   70 (456)
Q Consensus         4 ~i~~G~vil~e~P~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l   70 (456)
                      +|++||+||.++|         ....|..|++. .+.+|++|+.+.|||++||..+|+.|+.||..+
T Consensus         3 ~~~~G~~il~~~~---------~~~~C~~C~~~-~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~   59 (64)
T 2odd_A            3 LYFQGENLYFQGD---------SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQT   59 (64)
T ss_dssp             ------------C---------CSSSCTTTSSC-CCEEETTTSCCEESSHHHHHHHHHHHTTTTTSS
T ss_pred             cCCCCCEEeeCCC---------CCCcCccccCC-CcccCCCCCChhhCCHHHHHHHHHHHhHHHhcc
Confidence            7899999999999         25789999985 788999999999999999999999999999855

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.33  E-value=1.6e-11  Score=114.33  Aligned_cols=128  Identities=14%  Similarity=0.041  Sum_probs=121.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      ....|++++|+..+++++++..+.++++++....++..++.+|..+|++++|+.++++++.+.+..+|+++|..+..+..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      +|.++..+|++++|++++++|+++.+...|+++|....++..|+.+..
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  138 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ  138 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988888754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.33  E-value=4.7e-12  Score=127.36  Aligned_cols=84  Identities=17%  Similarity=0.144  Sum_probs=81.4

Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772          362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  441 (456)
Q Consensus       362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~  441 (456)
                      ..|+|++|+.+++++|.+.++++|++||.++..+++||.+|..+|++++|+.++++|++|.+..+|++||.+...+.+|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 012772          442 EAQA  445 (456)
Q Consensus       442 ~~~~  445 (456)
                      .+..
T Consensus       390 ~~~~  393 (433)
T 3qww_A          390 RLYM  393 (433)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8854

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=99.31  E-value=3.3e-13  Score=123.66  Aligned_cols=80  Identities=24%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             HhccccccccCCCCcceeeeccc-cccccCCCcCCCeeEEe-CCEEEEEEecCCCCCCcccCChhhHHHhhCCccccCCC
Q 012772          196 LACNAHTICNSELRPLGTGLYPV-ISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDG  273 (456)
Q Consensus       196 ~~~N~~~i~~~~~~~~g~glyp~-~sl~NHSC~PN~~~~f~-~~~~~vra~~~I~~Gee~~~~~~r~~~l~~~f~C~C~~  273 (456)
                      ...|.|.+.... .....|+|+. ++++||||.||+...+. ++++.|+|+|+|++|||||+++...-.-..+|.|.|.+
T Consensus       154 ~~~n~f~i~~~~-~~~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~~~~~~f~C~C~~  232 (247)
T 3rq4_A          154 AGENDFSIMYST-RKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHT  232 (247)
T ss_dssp             TTTSCTTEEEET-TTTEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTSSSGGGTTCCCHH
T ss_pred             ccCCcEEEEecC-CcccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchhcCCCCCEEECCC
Confidence            347888887543 3467899987 88999999999987764 68999999999999999986554221111368999999


Q ss_pred             CCC
Q 012772          274 CSG  276 (456)
Q Consensus       274 C~~  276 (456)
                      |..
T Consensus       233 C~~  235 (247)
T 3rq4_A          233 CER  235 (247)
T ss_dssp             HHH
T ss_pred             CCC
Confidence            963

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.29  E-value=1.6e-11  Score=123.60  Aligned_cols=97  Identities=10%  Similarity=-0.021  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ..+...+..+..+|+|++|+.+++++++++++++||+||.++..+++||.+|..+|++++|+.+++++++++++.+|++|
T Consensus       330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H  409 (429)
T 3qwp_A          330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH  409 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34455666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHc
Q 012772          389 PLLGLQYYTCGKLEWFL  405 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~  405 (456)
                      |.++..+.+|+.+...+
T Consensus       410 p~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          410 SLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            99999999999887643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.29  E-value=1.4e-10  Score=109.87  Aligned_cols=136  Identities=15%  Similarity=0.139  Sum_probs=126.4

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|+..+++++.+.++.++++++....++..++.+|..+|++++|++++++++.+.+..+|+++|..
T Consensus        73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (311)
T 3nf1_A           73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV  152 (311)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            34555677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      +..++.+|.++..+|++++|+.++++|+++.....|+++|....+...++.+....
T Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  208 (311)
T 3nf1_A          153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ  208 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999988888888776543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.28  E-value=1.2e-10  Score=110.35  Aligned_cols=136  Identities=15%  Similarity=0.089  Sum_probs=125.8

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .+...+..+...|++++|+..+++++.+..+..+++++....++..++.+|..+|++++|+.++++++.+.+..+|+++|
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            33445556778899999999999999998888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      ..+..++.+|.++..+|++++|+.++++|+++....+|+++|....+...++.+..
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  164 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ  164 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888887753

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=99.19  E-value=3e-12  Score=118.41  Aligned_cols=80  Identities=23%  Similarity=0.223  Sum_probs=57.1

Q ss_pred             HhccccccccCCCCcceeeeccccccccCCCcCCCeeEEeCC-EEEEEEecCCCCCCcccCChhhHHHhhCCccccCCCC
Q 012772          196 LACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKDDGC  274 (456)
Q Consensus       196 ~~~N~~~i~~~~~~~~g~glyp~~sl~NHSC~PN~~~~f~~~-~~~vra~~~I~~Gee~~~~~~r~~~l~~~f~C~C~~C  274 (456)
                      ...|.|.|........+......++++||||.||+...++|. ++.++|+|+|++|||||+++...-.-..+|.|.|.+|
T Consensus       183 ~~~~dF~i~~s~~~~~a~~~g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~~~~f~C~C~~c  262 (273)
T 3s8p_A          183 HGENDFSVMYSTRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYTC  262 (273)
T ss_dssp             TTTSCTTEEEETTTTEEEEEESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTTTSGGGTTCCCHHH
T ss_pred             hcccccceeccccccccceecchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchhcCCCCeEEECCCC
Confidence            346777776543333343344567999999999999988775 8999999999999999865542211113689999887


Q ss_pred             C
Q 012772          275 S  275 (456)
Q Consensus       275 ~  275 (456)
                      .
T Consensus       263 ~  263 (273)
T 3s8p_A          263 E  263 (273)
T ss_dssp             H
T ss_pred             c
Confidence            5

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.09  E-value=3.2e-09  Score=87.85  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=87.9

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      .+.+..+..+|+|++|++.|++++++     .|.+   ..++.++|.+|..+|+|++|++.+++++.+.. -.+..++.+
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~   82 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHHH
Confidence            34455677899999999999999864     3444   56788999999999999999999999999866 356778899


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +..++++|.++..+|++++|+++|++|+.+
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999874

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=99.02  E-value=9.4e-11  Score=96.10  Aligned_cols=47  Identities=19%  Similarity=0.125  Sum_probs=42.2

Q ss_pred             ceeeeccccccccCCCcCCCeeEEe--CCEEEEEEecCCCCCCcccCCh
Q 012772          211 LGTGLYPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       211 ~g~glyp~~sl~NHSC~PN~~~~f~--~~~~~vra~~~I~~Gee~~~~~  257 (456)
                      -+..++|.++++||||.||+...++  +.++.++|+|+|++||||++++
T Consensus        57 d~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y  105 (119)
T 1n3j_A           57 MSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISY  105 (119)
T ss_dssp             EEEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCC
T ss_pred             ccccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEec
Confidence            5788999999999999999999987  4589999999999999998654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.01  E-value=1.2e-08  Score=87.68  Aligned_cols=128  Identities=10%  Similarity=0.050  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC---CC-------CccHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 012772          306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH---PF-------SVNLMQTREKLIKILMELEDWKEALAYCQL  375 (456)
Q Consensus       306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~---p~-------h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~  375 (456)
                      +.+..+...+..+..+|+|++|+..|++++.+......   |.       ++....++.+++.+|..+|+|++|+.++.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34566677888888999999999999999987544321   22       456678899999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          376 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       376 ~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                      ++.+        .|.....++.+|.++..+|++++|+..|++|+++     .|+++  ..+...|..+...+.
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~p~~~--~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-----HPAAA--SVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CGGGH--HHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCCCH--HHHHHHHHHHHHHHH
Confidence            9976        4555678999999999999999999999999988     34444  134455555554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.01  E-value=9.8e-09  Score=84.03  Aligned_cols=121  Identities=11%  Similarity=0.020  Sum_probs=101.2

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...|..+...|++++|++.+++++..     .|+++....++..++.++..+|+|++|+.++++++..     .++++..
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~   75 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKA   75 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCccc
Confidence            44566677889999999999988753     5788888889999999999999999999999998864     3677777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      ...++.+|.++..+|++++|+..|+++++..     |+++........|..+...+
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~~~~  126 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIRLGQ  126 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHhhh
Confidence            8899999999999999999999999998853     78888888888877765543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.99  E-value=1.6e-08  Score=83.46  Aligned_cols=104  Identities=14%  Similarity=0.140  Sum_probs=86.2

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ..+.+..+..+|+|++|++.|++++++     .|.+   ..++.+++.+|..+|++++|+..+++++.+        .|.
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~   79 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRL--------DSK   79 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHh--------hhh
Confidence            345666788899999999999999864     3444   567789999999999999999999999975        344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  435 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~  435 (456)
                      ....++.+|.++..+|++++|++.|++|+++     -|+++....
T Consensus        80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~a~~  119 (126)
T 4gco_A           80 FIKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEEARE  119 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHHHHH
Confidence            4668999999999999999999999999986     466665443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.94  E-value=4.3e-08  Score=82.54  Aligned_cols=131  Identities=15%  Similarity=0.081  Sum_probs=107.0

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++.+..+.  ++....+.++..++.++..+|++++|++++++++.+.+..  ++.+
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~   86 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRA   86 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcH
Confidence            34455666778899999999999999886653  3445667889999999999999999999999999988765  5667


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      ..+..++.+|.++..+|++++|+.++++|+++....-  +++........++.+...
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999987652  455566666777666543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.93  E-value=4.9e-08  Score=79.80  Aligned_cols=121  Identities=15%  Similarity=0.125  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      .......+..+..+|++++|+..|++++.+     .|.+   ..++.+++.++..+|+|++|+..+++++.+        
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------   67 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK--------   67 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            344566777788899999999999999864     3444   477889999999999999999999999875        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      .|.....++.+|.++..+|++++|+..|++|+++-....  +.|....+...|..+...
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence            344467899999999999999999999999999874432  345556666666666554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.90  E-value=1.1e-07  Score=81.24  Aligned_cols=135  Identities=13%  Similarity=0.130  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCC--C--ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--S--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  382 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~--h--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~  382 (456)
                      +...+...+..+...|+|++|++.|++++++........  +  +....++.+++.++..+|+|++|+..+.++|.++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            345566777778889999999999999998753310000  1  123448999999999999999999999999998665


Q ss_pred             hcCCCChHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          383 VYPQFHPLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       383 ~~g~~hp~~~~~l----~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      . ++-.|..+..+    +++|.++..+|++++|+..|++|+++--.--| .-+....+...+++-
T Consensus        90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~-~~~~~~~~~~~~~~~  152 (159)
T 2hr2_A           90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDR  152 (159)
T ss_dssp             H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHH
T ss_pred             c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHH
Confidence            4 46678888888    99999999999999999999999999766433 333444444444433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.89  E-value=2.2e-08  Score=98.60  Aligned_cols=127  Identities=9%  Similarity=0.029  Sum_probs=110.1

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+...|++++|++.+++++.+....  ++++..+.++..+|.+|..+|++++|+.++++++.+++.. +..++..+.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~  185 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHH
Confidence            6677788999999999999998765543  5566788999999999999999999999999999999875 556899999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      .+++||.++..+|++++|++++++|+++....  .+++....++.+|+.+..
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876  466777777777777754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.88  E-value=3.9e-08  Score=84.01  Aligned_cols=111  Identities=9%  Similarity=0.082  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ......+..+..+|++++|+..|++++.+     .|.+   ..++.+++.+|..+|+|++|+..+++++.+     .|++
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P~~  103 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKND  103 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CCCC
Confidence            34455666778899999999999999764     4555   456789999999999999999999999864     2444


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                      |   ..++++|.++..+|++++|+..|++|+++     .++++........|
T Consensus       104 ~---~~~~~lg~~~~~lg~~~eA~~~~~~al~l-----~~~~~~~~~A~~ll  147 (151)
T 3gyz_A          104 Y---TPVFHTGQCQLRLKAPLKAKECFELVIQH-----SNDEKLKIKAQSYL  147 (151)
T ss_dssp             C---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence            4   46899999999999999999999999986     35666444444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.88  E-value=5.1e-08  Score=96.00  Aligned_cols=131  Identities=12%  Similarity=0.176  Sum_probs=110.3

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++++..+. +..++..+.++.++|.+|..+|++++|++++++++.+.+..  ++++
T Consensus       145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  221 (383)
T 3ulq_A          145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQ  221 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChH
Confidence            34455666778899999999999999887654 33467789999999999999999999999999999998876  6789


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      ..+..+++||.++..+|++++|+.++++|+++......  .|....++..|+.+..
T Consensus       222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~  275 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--LPSLPQAYFLITQIHY  275 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887632  2556666777766643

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.87  E-value=9e-10  Score=78.09  Aligned_cols=45  Identities=38%  Similarity=0.761  Sum_probs=40.7

Q ss_pred             CCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchhhH
Q 012772           26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS   71 (456)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~   71 (456)
                      ....|..|++. .+.+|++|+.+.|||++||..+|+.|+.||..+.
T Consensus        14 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~   58 (60)
T 2dj8_A           14 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS   58 (60)
T ss_dssp             CSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSS
T ss_pred             CCcccccCCCC-CcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhcc
Confidence            46889999985 7889999999999999999999999999998653

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=98.85  E-value=1.5e-09  Score=96.20  Aligned_cols=61  Identities=28%  Similarity=0.461  Sum_probs=43.9

Q ss_pred             ccccccCCCcCCCeeEE---eC-CEEEEEEecCCCCCCcccCChhhHH-HhhCCccccC--CCCCCCc
Q 012772          218 VISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEGQFDDIQES-AILEGYRCKD--DGCSGFL  278 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f---~~-~~~~vra~~~I~~Gee~~~~~~r~~-~l~~~f~C~C--~~C~~~~  278 (456)
                      .++++||||.||+...+   +| .++.++|+|+|++|||||+++.... .....|.|.|  +.|.+.+
T Consensus       124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~~~~~~C~Cgs~~Crg~l  191 (192)
T 2w5y_A          124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFL  191 (192)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC-------CCBCCCCCTTCCSBC
T ss_pred             hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcCCCCceeECCCCCCcCcC
Confidence            46789999999998753   33 3789999999999999986653211 1134789988  5788754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.82  E-value=1.6e-07  Score=78.74  Aligned_cols=120  Identities=13%  Similarity=0.093  Sum_probs=93.1

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ......+..+..+|++++|+..+++++..     .|.+   ..++..++.++..+|++++|+.++++++.+     .|++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~   85 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINE   85 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC
Confidence            33455666777899999999999988753     4555   456678999999999999999999999874     3445


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      |.   .++++|.++..+|++++|++.|++|+++.-     ++|....+..........+..
T Consensus        86 ~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~l~~l~~  138 (142)
T 2xcb_A           86 PR---FPFHAAECHLQLGDLDGAESGFYSARALAA-----AQPAHEALAARAGAMLEAVTA  138 (142)
T ss_dssp             TH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TCGGGHHHHHHHHHHHHHHHH
T ss_pred             cH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHHHHHHh
Confidence            44   578999999999999999999999998763     566666655555555555543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.81  E-value=1.4e-07  Score=83.21  Aligned_cols=130  Identities=8%  Similarity=0.037  Sum_probs=103.7

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++.+.+..  ...+....++.+++.+|..+|++++|++++++++.+.+ ..|.+++
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~  104 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHH
Confidence            34455666778899999999999999876543  34566788999999999999999999999999999988 4454555


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      ..+..++++|.++..+|++++|+.++++|+++.... | +......++..++.+.
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~la~~~  157 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-D-DQVAIACAFRGLGDLA  157 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-c-chHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999997654 2 2233344455555544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.80  E-value=1.6e-07  Score=79.73  Aligned_cols=115  Identities=12%  Similarity=0.122  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      .......+..+..+|++++|+..+++++.+     .|.+   ..++.+++.++..+|+|++|+.++++++.+     .|+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~   87 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIX   87 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence            344556677788899999999999988754     4555   455678999999999999999999999864     244


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      +|   ..++++|.++..+|++++|+..|++|+++..     ++|....+.......
T Consensus        88 ~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~  135 (148)
T 2vgx_A           88 EP---RFPFHAAECLLQXGELAEAESGLFLAQELIA-----NXPEFXELSTRVSSM  135 (148)
T ss_dssp             CT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-----TCGGGHHHHHHHHHH
T ss_pred             Cc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----CCCcchHHHHHHHHH
Confidence            44   4689999999999999999999999988763     455554444443333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.80  E-value=2.1e-07  Score=82.65  Aligned_cols=123  Identities=11%  Similarity=0.078  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc----------HHHHHHHHHHHHHHccCHHHHHHHHHH
Q 012772          306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN----------LMQTREKLIKILMELEDWKEALAYCQL  375 (456)
Q Consensus       306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~----------~~~~~~~L~~~~~~~g~~~~A~~~~~~  375 (456)
                      ..+..+...+..+..+|++++|+..|++++.+...  .+....          ...++.+++.+|..+|+|++|+.++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34556667788888999999999999999864321  111111          147888999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          376 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       376 ~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      ++.+        +|.....++.+|.++..+|++++|++.|++|+++     .|+++...   ..++.+...
T Consensus       114 al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~~  168 (198)
T 2fbn_A          114 VLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIR---NSYELCVNK  168 (198)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHH---HHHHHHHHH
T ss_pred             HHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHH---HHHHHHHHH
Confidence            9975        3455678999999999999999999999999987     45555444   444444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.79  E-value=3.5e-07  Score=78.47  Aligned_cols=99  Identities=12%  Similarity=0.096  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      ...+...+..+...|++++|++.|++++.+     .|.+   ..++.+++.+|..+|+|++|+.++++++.+        
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------   74 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APAN---PIYLSNRAAAYSASGQHEKAAEDAELATVV--------   74 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            344556666778899999999999999864     3444   567889999999999999999999999975        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      +|.....++++|.++..+|++++|+..|++|+++.
T Consensus        75 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34446789999999999999999999999999875

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.78  E-value=1.4e-09  Score=74.82  Aligned_cols=46  Identities=30%  Similarity=0.746  Sum_probs=37.5

Q ss_pred             CCCCCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchh
Q 012772           23 NSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQV   69 (456)
Q Consensus        23 ~~~~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~   69 (456)
                      .+.....|..|++. .+.+|++|+.+.|||++||..+|+.|+.||..
T Consensus         5 ~~~~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~~   50 (52)
T 2jw6_A            5 AERKEQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ   50 (52)
T ss_dssp             ------CCSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTTTC
T ss_pred             ccccCCcCCCCCCC-CcCcCCCCCCEeecCHHHHHHHHHHHCHHHcc
Confidence            34456899999986 78999999999999999999999999999973

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.78  E-value=1.7e-07  Score=92.12  Aligned_cols=130  Identities=10%  Similarity=0.089  Sum_probs=108.6

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++.+..+. +...+..+.++.++|.+|..+|+|++|++++++++.+.+..  ++.+
T Consensus       143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~  219 (378)
T 3q15_A          143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDR  219 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHH
Confidence            34455666778899999999999999887543 22244678999999999999999999999999999998765  5666


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      ..+..+++||.++..+|++++|+.++++|+++.+..   .+|....++..|+.+..
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999887   55666677777777653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.78  E-value=1.1e-07  Score=90.17  Aligned_cols=129  Identities=10%  Similarity=0.028  Sum_probs=104.4

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+..+|++++|++.+++++.+..+  .++....+.++.++|.+|..+|++++|+.++++++..++. ++.+++..+..
T Consensus       122 ~~~~~~~~~~~~Ai~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  198 (293)
T 3u3w_A          122 AAYVLKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA-LHDNEEFDVKV  198 (293)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHTCCC--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SSCCHHHHHHH
T ss_pred             HHHHHcccCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccchhHHHHH
Confidence            33456778999999999999874222  2233345778999999999999999999999999998876 45688999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                      ++++|.++..+|++++|++++++|+++....  .+++....++..++.+...+.
T Consensus       199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          199 RYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999998765  255666777777776655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.77  E-value=2e-07  Score=88.34  Aligned_cols=112  Identities=19%  Similarity=0.132  Sum_probs=94.5

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      .....+..+..+|++++|+..+++++.+.+..  +.+.. ...++.++|.+|..+|+|++|++++++++.+...  ..++
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~  232 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSM  232 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcH
Confidence            34455666778999999999999999876543  23333 3388999999999999999999999999998754  4677


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHh
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENA-IKSMTEAVEILRIT  425 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA-~~~l~~Al~i~~~~  425 (456)
                      ..++..++++|.++..+|++++| ..++++|+.+.+..
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999999999 88899999999875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.77  E-value=1.8e-07  Score=88.74  Aligned_cols=125  Identities=12%  Similarity=-0.027  Sum_probs=99.1

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+..+|++++|++.|++++.+..+. + +....+.++.+++.+|..+|++++|+.++++++.++...  ++....+..
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~  119 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKA-G-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF  119 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence            445667899999999999999887653 2 334568899999999999999999999999999988653  445566889


Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       395 l~~La~~~~~~-g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      +.++|.++..+ |++++|+.+|++|+++.... | ++.....++.+++.+..
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~  169 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQD-Q-SVALSNKCFIKCADLKA  169 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC-C-ChHHHHHHHHHHHHHHH
Confidence            99999999996 99999999999999998753 1 12233455566665543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.76  E-value=1.4e-07  Score=89.50  Aligned_cols=112  Identities=17%  Similarity=0.125  Sum_probs=97.6

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+..+|++++|+..+++++...++ ++.+++..+.++.+++.+|..+|+|++|++++++++.+.+..  .+++.
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~  234 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMAL  234 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHH
Confidence            444556677899999999999999987655 344677788899999999999999999999999999988764  56778


Q ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Q 012772          391 LGLQYYTCGKLEWFLGD-TENAIKSMTEAVEILRIT  425 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~-~~eA~~~l~~Al~i~~~~  425 (456)
                      .+..++++|.++..+|+ +++|++++++|+.+.+..
T Consensus       235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            89999999999999995 699999999999999965

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.75  E-value=5.9e-08  Score=97.88  Aligned_cols=117  Identities=10%  Similarity=0.056  Sum_probs=100.1

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcC-CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYH-PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~-p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      .+..+..+|++++|++.+++++++.....+ ..++..+.++.++|.+|..+|++++|+.++++++.+.+...++.++..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            455567889999999999999998765443 3477888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772          393 LQYYTCGKLEWFL--GDTENAIKSMTEAVEILRITHGTNSPFMKE  435 (456)
Q Consensus       393 ~~l~~La~~~~~~--g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~  435 (456)
                      ..+.++|.++...  +++++|+.+|++|+++     .|++|....
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~  176 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS  176 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence            9999999877765  4699999999999986     467776543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.75  E-value=2.2e-07  Score=78.11  Aligned_cols=111  Identities=20%  Similarity=0.167  Sum_probs=95.4

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|++.+++++.+....  ++......++.+++.++..+|++++|++++++++.+.+..  .+++
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~  126 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRI  126 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchH
Confidence            34456666788999999999999999876553  3455668889999999999999999999999999987764  4678


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      ..+..+..+|.++..+|++++|.+++++|+++...
T Consensus       127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999998764

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=98.74  E-value=3.2e-09  Score=75.15  Aligned_cols=44  Identities=36%  Similarity=0.774  Sum_probs=40.0

Q ss_pred             CCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchhh
Q 012772           26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL   70 (456)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l   70 (456)
                      ....|..|.+. .+.+|++|+.+.|||++||..+|+.|+.+|..+
T Consensus        12 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~   55 (60)
T 2od1_A           12 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQT   55 (60)
T ss_dssp             CSSCCTTTSSC-CCEECTTTSCCEESSHHHHHHHHHHHTTTSSCS
T ss_pred             CCCccccCCCc-ccccCCCCCCeeecCHHHHHHHHHHHhHHHccc
Confidence            46889999985 788999999999999999999999999999854

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.74  E-value=8.8e-07  Score=71.64  Aligned_cols=104  Identities=13%  Similarity=0.108  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ......+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|++++|+.++++++.... -.+..+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~   75 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-ccchhH
Confidence            34455666677889999999999998764     2443   46778999999999999999999999998765 346677


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +..+..++.+|.++..+|++++|.+.+++++++
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            777999999999999999999999999999985

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=2.7e-07  Score=76.82  Aligned_cols=111  Identities=15%  Similarity=0.161  Sum_probs=89.4

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+...|++++|++.+++++.     +.|++.....++..++.+|..+|+|++|+.++++++..        +|.
T Consensus        31 ~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~   97 (148)
T 2dba_A           31 LRKEGNELFKCGDYGGALAAYTQALG-----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------DGG   97 (148)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TSC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH-----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------Ccc
Confidence            34555667788999999999998864     35666666888999999999999999999999999875        233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  439 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~  439 (456)
                      ....++.+|.++..+|++++|+..|++++++     .|+++.+...+..
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~  141 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEALRN  141 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHH
Confidence            3677899999999999999999999999975     4666655544433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.73  E-value=9.2e-07  Score=72.80  Aligned_cols=100  Identities=13%  Similarity=0.123  Sum_probs=83.5

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|+|++|+.++++++.+        +|
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p   74 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------DG   74 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------Cc
Confidence            3445566677889999999999998764     3444   567889999999999999999999999875        23


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      .....++.+|.++..+|++++|+..+++|+++-...
T Consensus        75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence            445689999999999999999999999999987663

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=98.71  E-value=1.1e-08  Score=74.61  Aligned_cols=45  Identities=38%  Similarity=0.890  Sum_probs=40.9

Q ss_pred             CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchhhHh
Q 012772           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSR   72 (456)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~l~~   72 (456)
                      ...|..|.+. .+.+|.+|+.+.|||++||..+|+.|+.+|..+..
T Consensus        15 ~~~C~~C~~~-~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~   59 (70)
T 2d8q_A           15 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ   59 (70)
T ss_dssp             CCBCSSSCCB-CCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred             CCcCCCCCCc-ccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence            5799999986 78899999999999999999999999999996653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.71  E-value=2.9e-07  Score=87.24  Aligned_cols=126  Identities=10%  Similarity=0.026  Sum_probs=99.6

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH-
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG-  392 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~-  392 (456)
                      .+..+..+|++++|++.+++++.+..+  ..+....+.++.++|.+|..+|+|++|+.++++++.+.+.. + +.+... 
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~-~~~~~~~  196 (293)
T 2qfc_A          121 VAAYVLKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-H-DNEEFDV  196 (293)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHTTCCC--SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-C-CCHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-ccccchH
Confidence            344456788999999999988765432  12333467899999999999999999999999999988854 3 334433 


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      ..++++|.++..+|++++|++++++|+++...  ..++.....+...++.+..
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~  247 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLR  247 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999854  3466667777777777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.70  E-value=1.2e-07  Score=101.42  Aligned_cols=91  Identities=21%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+..+|++++|++.|++++++     .|+   ...++.+|+.+|..+|++++|++++++++++        +|..+..
T Consensus        50 g~~l~~~g~~~eA~~~~~~Al~l-----~P~---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a  113 (723)
T 4gyw_A           50 ASVLQQQGKLQEALMHYKEAIRI-----SPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADA  113 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            33344445555555555544432     122   2344455555555555555555555555443        2333444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +++||.++..+|++++|++.|++|+++
T Consensus       114 ~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A          114 HSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555555555555555555555555543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.69  E-value=5.5e-07  Score=88.68  Aligned_cols=123  Identities=13%  Similarity=0.146  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh--------cCCCCccHHHHHHHHHHHHHHccCHHHHHHHH
Q 012772          302 KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALAYC  373 (456)
Q Consensus       302 ~~~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~--------l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~  373 (456)
                      ....+.+..+...+..+..+|++++|++.|++++++....        ....++....++.+++.+|..+|+|++|++++
T Consensus       217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  296 (370)
T 1ihg_A          217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  296 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3344556667778888899999999999999999864432        11135566788999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 012772          374 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  437 (456)
Q Consensus       374 ~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~  437 (456)
                      ++++.+        +|..+..++.+|.++..+|++++|++.|++|+++     -|+++.....+
T Consensus       297 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-----~P~~~~~~~~l  347 (370)
T 1ihg_A          297 LEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAEL  347 (370)
T ss_dssp             HHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             HHHHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            999963        4556788999999999999999999999999986     35565544433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.68  E-value=4.8e-07  Score=79.79  Aligned_cols=126  Identities=13%  Similarity=0.094  Sum_probs=100.6

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+...|++++|++.+++++.+.+. .+........++.+++.++..+|++++|+.++++++.+.+..  ++...
T Consensus        69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~  145 (203)
T 3gw4_A           69 LHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVA  145 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHH
Confidence            345566677899999999999999988653 343444778899999999999999999999999999987653  44566


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  441 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~  441 (456)
                      .+..+..+|.++..+|++++|..++++|+++.... | +......++..+.
T Consensus       146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~~~  194 (203)
T 3gw4_A          146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL-E-DSEAVNELMTRLN  194 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHhccc
Confidence            78889999999999999999999999999999876 2 2233344444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.68  E-value=5.1e-07  Score=89.06  Aligned_cols=132  Identities=11%  Similarity=0.065  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  385 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g  385 (456)
                      ....+...+..+...|++++|+..+++++.+     .|.++. ...++..++.+|..+|++++|+.++++++.+.+..  
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--  119 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--  119 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--
Confidence            3455667777788899999999999999864     455554 56788999999999999999999999999998876  


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      .++|..+..++.+|.++..+|++++|+.++++|+++....  .+++....++..++.+....
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~  179 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAK  179 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHc
Confidence            6789999999999999999999999999999999998876  25566666666666655443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.68  E-value=4e-07  Score=89.48  Aligned_cols=111  Identities=11%  Similarity=0.002  Sum_probs=95.8

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|++.+++++.+.++.  ++......++.+||.+|..+|++++|++++++++.+.+..   .+|
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~  258 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPD  258 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGG
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CCh
Confidence            34455666778999999999999999887654  3445778899999999999999999999999999998876   566


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      ..+..+++||.++..+|++++|..++++|+++....
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            778999999999999999999999999999986553

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=98.67  E-value=7.3e-09  Score=94.84  Aligned_cols=61  Identities=28%  Similarity=0.349  Sum_probs=43.9

Q ss_pred             ccccccCCCcCCCeeEE--eC--CEEEEEEecCCCCCCcccCChhhHHHhhCCccccC--CCCCCCc
Q 012772          218 VISIINHSCLPNAVLVF--EG--RLAVVRAVQHVPKGAEGQFDDIQESAILEGYRCKD--DGCSGFL  278 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f--~~--~~~~vra~~~I~~Gee~~~~~~r~~~l~~~f~C~C--~~C~~~~  278 (456)
                      .+.++||||.||+...+  .+  .++.+.|+|+|++|||||++|...-.-...|.|.|  +.|.|.+
T Consensus       165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~~~~~C~CGs~~CrG~l  231 (232)
T 3ooi_A          165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSGFL  231 (232)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTTCTTCBCCCCCTTCCSBC
T ss_pred             ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCCCCCcEeECCCCcCcCcC
Confidence            45688999999998753  23  47889999999999999976642111123688877  4687654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.65  E-value=2.5e-07  Score=85.82  Aligned_cols=114  Identities=12%  Similarity=0.117  Sum_probs=97.4

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ..+...|..+..+|++++|+..+++++.     ..|.++....++..+|.+|..+|+|++|+.++++++..     -|.+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~p~~   85 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFT-----YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----YQID   85 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGG-----GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----CCCC
Confidence            4456677778889999999999998864     45888888999999999999999999999999999875     2567


Q ss_pred             hHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 012772          389 PLLGLQYYTCGKLEWF--------LGDTENAIKSMTEAVEILRITHGTNSPFMKELI  437 (456)
Q Consensus       389 p~~~~~l~~La~~~~~--------~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~  437 (456)
                      |.....++.+|.++..        +|++++|+..|+++++.     -|+++.....+
T Consensus        86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~  137 (261)
T 3qky_A           86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDAT  137 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHH
Confidence            8888999999999999        99999999999999875     36777666555

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.63  E-value=1.6e-07  Score=75.96  Aligned_cols=97  Identities=12%  Similarity=0.087  Sum_probs=77.3

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  400 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  400 (456)
                      +|++++|+..++++++     +++.++....++.+++.+|..+|+|++|+.++++++..        +|.....++.+|.
T Consensus         3 ~g~~~~A~~~~~~al~-----~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~   69 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAM   69 (117)
T ss_dssp             ----CCCHHHHHHHHS-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHH-----cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHH
Confidence            5788999999998875     33446778899999999999999999999999999865        2333668899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772          401 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  435 (456)
Q Consensus       401 ~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~  435 (456)
                      ++..+|++++|+..+++|+++.     |++|.+..
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~   99 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAET-----SDDETIQS   99 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHH-----CCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHH
Confidence            9999999999999999998763     56665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.63  E-value=2.5e-06  Score=72.37  Aligned_cols=107  Identities=14%  Similarity=0.120  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      ........+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|+|++|+.++++++..       
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------   76 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL-------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            3455666777788899999999999998764     3433   567889999999999999999999999875       


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                       +|.....++.+|.++..+|++++|+.++++|+++     .|+++...
T Consensus        77 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~  118 (166)
T 1a17_A           77 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAK  118 (166)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHH
T ss_pred             -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH
Confidence             2344668899999999999999999999999976     45555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.61  E-value=3.6e-07  Score=87.32  Aligned_cols=124  Identities=15%  Similarity=0.103  Sum_probs=93.3

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+..+|++++|++.+++++++..+. + +....+.++.+++.+|..+|++++|+.++++++.+++..  ++....+..
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~  118 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANN-R-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMA  118 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence            344667789999999999988876543 2 344567888899999999999999999999999887642  344567788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      +.++|.++.. |++++|+.+|++|+++.... | +......++.+++.+..
T Consensus       119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~~  166 (307)
T 2ifu_A          119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLLV  166 (307)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHHH
Confidence            8999999988 99999999999999988763 2 22334456666665543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.61  E-value=1.3e-06  Score=69.13  Aligned_cols=108  Identities=24%  Similarity=0.242  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      +......+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|++++|+.++++++..        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            344556667777899999999999998764     3444   457788999999999999999999999875        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL  436 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~  436 (456)
                      .|.....++.+|.++..+|++++|.+.+++++++     .|+++.....
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~  111 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQLKEG  111 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----CCCCHHHHHH
Confidence            2334567899999999999999999999999864     5666655433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.61  E-value=5.9e-07  Score=76.22  Aligned_cols=109  Identities=11%  Similarity=-0.048  Sum_probs=87.7

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...|..+...|++++|++.+++++++     .|++   ..++..++.+|..+|++++|+.++++++.+        .|.-
T Consensus        35 ~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~   98 (150)
T 4ga2_A           35 FYFAKLYYEAKEYDLAKKYICTYINV-----QERD---PKAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQ   98 (150)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCC
Confidence            34566778899999999999999864     3555   567889999999999999999999999975        3444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIK-SMTEAVEILRITHGTNSPFMKELILKLE  441 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~-~l~~Al~i~~~~~G~~h~~~~~~~~~l~  441 (456)
                      ...+++||.++..+|++++|.+ ++++|+++     -|+||.+..+...|-
T Consensus        99 ~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           99 KDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHH
Confidence            5679999999999999987665 46899875     578888766655543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.60  E-value=1.5e-06  Score=82.06  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=104.8

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      .+...+..+...|++++|+..+++++..     .|.++. ...++..++.++...|++++|++++++++.+.+..  +++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~   79 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ   79 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence            4455667778899999999999999864     455544 46888999999999999999999999999998876  678


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      |..+..+..+|.++..+|++++|+.++++|+++....  .+++....+...++.+...
T Consensus        80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~  135 (338)
T 3ro2_A           80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHA  135 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999998875  2444445555555555443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.60  E-value=8.9e-07  Score=87.33  Aligned_cols=130  Identities=11%  Similarity=0.051  Sum_probs=107.7

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|++.+++++++....  +.......++..++.+|..+|++++|+.++++++.+....  .+++
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  300 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GERE  300 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHH
Confidence            33455666778999999999999999886653  3455677889999999999999999999999999998865  6677


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      ..+..+..+|.++..+|++++|+.++++|+++....  .+++....++..|+.+..
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~  354 (411)
T 4a1s_A          301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHS  354 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999998876  245555666666666643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.60  E-value=6.4e-07  Score=83.03  Aligned_cols=118  Identities=8%  Similarity=0.041  Sum_probs=100.4

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHH--------------HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--------------EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~--------------~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      +|++++|+..+++++..     .|+++....+.              ..++.+|..+|+|++|+..+++++..     -|
T Consensus       110 ~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p  179 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YP  179 (261)
T ss_dssp             CHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred             chhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CC
Confidence            78999999999998764     47777777666              88899999999999999999998863     25


Q ss_pred             CChHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhcc
Q 012772          387 FHPLLGLQYYTCGKLEWFL----------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSS  453 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~----------g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~~~~~  453 (456)
                      +++.....++.+|.++..+          |++++|+..|+++++..     |+|+.+......|+.+..++...+++
T Consensus       180 ~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          180 DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            6777888999999999977          88999999999988754     79999999999999998888776654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.60  E-value=1.9e-06  Score=69.45  Aligned_cols=114  Identities=17%  Similarity=0.155  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      .......+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|++++++++..        
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   75 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICI--------   75 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhc--------
Confidence            344455666777889999999999998764     3433   567789999999999999999999999874        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      +|.....++.+|.++..+|++++|.+.+++++++     .|+++.   ....++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~~~~~  125 (131)
T 2vyi_A           76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL-----DPDNET---YKSNLKIAEL  125 (131)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CccchH---HHHHHHHHHH
Confidence            2333567899999999999999999999999986     445543   3444444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.59  E-value=2e-06  Score=77.15  Aligned_cols=106  Identities=12%  Similarity=0.141  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH----------------HHHHHHHccCHHHHHH
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK----------------LIKILMELEDWKEALA  371 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~----------------L~~~~~~~g~~~~A~~  371 (456)
                      +..++..+..+...|++++|+..+++++...     |+   -..++..                ++.+|..+|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-----ID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----HH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            3455667777888999999999999998652     22   2334444                9999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          372 YCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       372 ~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                      ++++++.+        +|.-...++.+|.++..+|++++|+..|++|+++     .|+++...
T Consensus        76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~  125 (208)
T 3urz_A           76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAAN  125 (208)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred             HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHH
Confidence            99999874        3444678999999999999999999999999986     46666543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.58  E-value=1.1e-06  Score=71.56  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=78.6

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+...|++++|++.+++++..     .|.+   ..++..++.++..+|++++|+.++++++..        .|.
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~   82 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL--------EPT   82 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC
Confidence            344555667789999999999988643     3433   567889999999999999999999999874        233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ....++.+|.++..+|++++|++++++++++
T Consensus        83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999986

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.58  E-value=2.7e-07  Score=93.00  Aligned_cols=98  Identities=8%  Similarity=-0.114  Sum_probs=85.1

Q ss_pred             CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      +...+.+++.||.++..+|++++|++++++++++.+...+ ..||..+..+.++|.+|..+|++++|+.++++|++|...
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3345677889999999999999999999999999998887 569999999999999999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHH
Q 012772          425 THGTNSPFMKELILKLEEA  443 (456)
Q Consensus       425 ~~G~~h~~~~~~~~~l~~~  443 (456)
                      ..++.++...++...++.+
T Consensus       127 ~~~~~~~~~~~~~~~~g~~  145 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWT  145 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHH
Confidence            9888887777666655433

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=98.57  E-value=2.4e-08  Score=90.82  Aligned_cols=63  Identities=27%  Similarity=0.364  Sum_probs=44.6

Q ss_pred             ccccccCCCcCCCeeEE--eC--CEEEEEEecCCCCCCcccCChhhHH-HhhCCccccCC--CCCCCccc
Q 012772          218 VISIINHSCLPNAVLVF--EG--RLAVVRAVQHVPKGAEGQFDDIQES-AILEGYRCKDD--GCSGFLLR  280 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f--~~--~~~~vra~~~I~~Gee~~~~~~r~~-~l~~~f~C~C~--~C~~~~~~  280 (456)
                      .+.++||||.||+...+  .+  .++.+.|+|+|++|||||+++.... ....+|.|.|-  .|.+.+..
T Consensus       146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~~~~~~C~CGs~~Crg~i~~  215 (222)
T 3ope_A          146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKCGFEKCRGIIGG  215 (222)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCCSCCCBCCCCCTTCCSBCC-
T ss_pred             cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCCcCCCEeeCCCcCCCCccCC
Confidence            35578999999998764  33  3789999999999999997664211 11236877765  58887643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.57  E-value=3.7e-07  Score=97.62  Aligned_cols=97  Identities=22%  Similarity=0.292  Sum_probs=83.8

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      +.+...+..+..+|++++|++.|++++++     .|+   ...++.+||.+|..+|++++|++++++++++        .
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l-----~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------~   73 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEV-----FPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------S   73 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            34455666778899999999999999875     243   4678899999999999999999999999975        4


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      |..+..+++||.++..+|++++|++.|++|+++
T Consensus        74 P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l  106 (723)
T 4gyw_A           74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI  106 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566778999999999999999999999999986

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.56  E-value=9.9e-07  Score=84.22  Aligned_cols=110  Identities=10%  Similarity=0.022  Sum_probs=89.4

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      +...+..+..+|++++|+..+++++.+.... + +....+.++.+++.+|.. |++++|++++++++.+++..  ...+.
T Consensus        79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~  153 (307)
T 2ifu_A           79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-G-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQ  153 (307)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhH
Confidence            3444556677899999999999999886542 2 223467888999999988 99999999999999988762  34456


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      .+..++++|.++..+|++++|+.+|++|+++....
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999998764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.56  E-value=1.7e-06  Score=84.62  Aligned_cols=127  Identities=16%  Similarity=0.135  Sum_probs=104.4

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      +...+..+...|++++|+..+++++.+     .|.++. ...++..++.++...|++++|+.++++++.+.+..  .++|
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~   84 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQL   84 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccH
Confidence            345566677889999999999999865     455544 57889999999999999999999999999998876  6788


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      ..+..++.+|.++..+|++++|+.++++|+++.....  +++....+...++.+...
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~  139 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHA  139 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998762  344555555555555433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.55  E-value=1.6e-06  Score=84.81  Aligned_cols=126  Identities=15%  Similarity=0.089  Sum_probs=81.0

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+...|++++|+..+++++.+..+.  +++.....++.+++.+|..+|++++|+.++++++.+....  ++++..+
T Consensus       192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~  267 (406)
T 3sf4_A          192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEA  267 (406)
T ss_dssp             HHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHH
Confidence            34444556677777777777777665442  3445566677777777777777777777777777766543  3556667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      ..+..+|.++..+|++++|+.++++|+++....-  +++....+...++.+.
T Consensus       268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~  317 (406)
T 3sf4_A          268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRACWSLGNAY  317 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777766541  2344444444554443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.55  E-value=1.7e-06  Score=84.38  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=94.9

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+..+|++++|+..+++++.+....  .+......++.+++.++..+|++++|+.++++++.+.+..-++.+|..+
T Consensus        58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  135 (373)
T 1hz4_A           58 VLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE  135 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence            34455667899999999999998876542  2334557778899999999999999999999999999988777889999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      ..+..+|.++..+|++++|+.++++|+++...
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999998765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.55  E-value=4.7e-07  Score=73.92  Aligned_cols=94  Identities=11%  Similarity=-0.062  Sum_probs=77.3

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|+..+++++..     .|++   ..++..++.++..+|++++|+..+++++.+     .|++   
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~---   84 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQK-----EPER---EEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKD---   84 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---
Confidence            34455667789999999999999764     3444   567789999999999999999999999864     2344   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...++.||.++..+|++++|+..|++++++
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            447899999999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.55  E-value=1.3e-06  Score=84.82  Aligned_cols=101  Identities=13%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC------------ccHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS------------VNLMQTREKLIKILMELEDWKEALAYCQL  375 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h------------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~  375 (456)
                      .......+..+..+|++++|+..|++++.+.     |.+            +....++.+++.+|..+|+|++|+.++++
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-----EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-----hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4445566777788999999999999998753     333            23468889999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          376 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       376 ~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++.+        .|.....++++|.++..+|++++|+..|++|+++
T Consensus       222 al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          222 ALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9975        3445678999999999999999999999999986

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.53  E-value=2.1e-06  Score=81.08  Aligned_cols=129  Identities=15%  Similarity=0.088  Sum_probs=106.0

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|++.+++++.+..+.  +++.....++..++.++..+|++++|+.++++++.+....  .+++..
T Consensus       187 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~  262 (338)
T 3ro2_A          187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVE  262 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHH
Confidence            345556677899999999999998876553  4556678899999999999999999999999999988764  567888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      +..+..+|.++..+|++++|..++++|+++....-  +++....+...|+.+...
T Consensus       263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~  315 (338)
T 3ro2_A          263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTA  315 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987762  345555566666666443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.52  E-value=4.5e-06  Score=66.61  Aligned_cols=94  Identities=22%  Similarity=0.317  Sum_probs=76.8

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++..        +|..
T Consensus        13 ~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~   76 (125)
T 1na0_A           13 YNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNN   76 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCcc
Confidence            34455567789999999999988754     2333   456788999999999999999999998864        2333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...++.+|.++...|++++|..++++++++
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           77 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            567889999999999999999999999876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.50  E-value=3.4e-07  Score=77.76  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=79.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      +.++|++++|++.++++.        +.++.-......||.+|..+|+|++|++++++++.+        +|.-...++.
T Consensus         7 ~~~~~~~e~ai~~~~~a~--------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~   70 (150)
T 4ga2_A            7 RRSKADVERYIASVQGST--------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRF   70 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHS--------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHcChHHHHHHHHHHhc--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            445677788887776664        234444556678999999999999999999999975        4455678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      ||.++..+|++++|+..|++|+++     .|+++.   +...|+.+.
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~  109 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVEL-----NPTQKD---LVLKIAELL  109 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHH
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHH
Confidence            999999999999999999999986     455554   344444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.50  E-value=2.2e-06  Score=81.16  Aligned_cols=109  Identities=16%  Similarity=0.105  Sum_probs=88.5

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      .....+..+...|++++|+..+++++.+.... | +....+.++.+++.+|..+ |++++|+.++++++.+....  ..+
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~  154 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSV  154 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CCh
Confidence            34455666778899999999999999886542 2 2333577889999999996 99999999999999987642  233


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      +..+..+.++|.++..+|++++|+.+|++|+++.
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  188 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4456789999999999999999999999999864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.50  E-value=7.3e-07  Score=73.38  Aligned_cols=90  Identities=12%  Similarity=0.093  Sum_probs=74.6

Q ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 012772          348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  427 (456)
Q Consensus       348 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G  427 (456)
                      ..+.+..+||.++..+|+|++|++++.+++.+        +|..+..++++|.++..+|++++|+..+++|+++-.. ..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~   76 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cc
Confidence            34567789999999999999999999999975        4555778999999999999999999999999998765 45


Q ss_pred             CCCchHHHHHHHHHHHHHH
Q 012772          428 TNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       428 ~~h~~~~~~~~~l~~~~~e  446 (456)
                      ..++....++..++.+...
T Consensus        77 ~~~~~~a~~~~~lg~~~~~   95 (127)
T 4gcn_A           77 ADYKLIAKAMSRAGNAFQK   95 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            5667777777777766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.49  E-value=1.4e-06  Score=84.61  Aligned_cols=116  Identities=14%  Similarity=0.139  Sum_probs=89.0

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+...|++++|++.+++++++     .|.+   ..++..++.+|..+|++++|+.++++++.+        +|...
T Consensus       218 ~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~  281 (365)
T 4eqf_A          218 GLGVLFHLSGEFNRAIDAFNAALTV-----RPED---YSLWNRLGATLANGDRSEEAVEAYTRALEI--------QPGFI  281 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCch
Confidence            3455566789999999999999764     3444   557889999999999999999999999875        45557


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM----KELILKLEEAQ  444 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~----~~~~~~l~~~~  444 (456)
                      ..+++||.++..+|++++|+.+|++|+++.....|++++..    ..+...|..+.
T Consensus       282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  337 (365)
T 4eqf_A          282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL  337 (365)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence            88999999999999999999999999999999888776544    34445555543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.48  E-value=1.1e-06  Score=89.64  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=84.9

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .|..+..+|++++|++.|++++++     .|.   ...++.+++.+|..+|+|++|++++++++.+        +|..+.
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~   75 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIEL-----NPS---NAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIK   75 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHH
Confidence            344567789999999999999875     333   3778899999999999999999999999975        566678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  435 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~  435 (456)
                      .++++|.++..+|++++|++.|++|+++     .|+++....
T Consensus        76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~  112 (477)
T 1wao_1           76 GYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKM  112 (477)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCTTHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence            8999999999999999999999999987     455655443

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=98.47  E-value=4.9e-08  Score=84.84  Aligned_cols=39  Identities=26%  Similarity=0.163  Sum_probs=32.0

Q ss_pred             cccccCCCcCCCeeE--EeC--CEEEEEEecCCCCCCcccCCh
Q 012772          219 ISIINHSCLPNAVLV--FEG--RLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       219 ~sl~NHSC~PN~~~~--f~~--~~~~vra~~~I~~Gee~~~~~  257 (456)
                      +.++||||.|||...  +.+  .++.+.|+|+|++|||||+++
T Consensus       108 aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY  150 (166)
T 3f9x_A          108 GRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY  150 (166)
T ss_dssp             GGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECC
T ss_pred             hheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEc
Confidence            567999999998765  344  368899999999999998654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.46  E-value=2.9e-06  Score=85.92  Aligned_cols=107  Identities=16%  Similarity=0.248  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-------CCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH-------PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~-------p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      ........+..+..+|+|++|+..|++++.+....-.       ..+.....++.+++.+|..+|+|++|+.++.++|.+
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            3445566777788899999999999999875421100       001234788899999999999999999999999975


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          380 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       380 ~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                              +|.....++++|.++..+|++++|+..|++|+++
T Consensus       347 --------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          347 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             --------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence                    3444678999999999999999999999999986

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.44  E-value=2.8e-06  Score=76.99  Aligned_cols=119  Identities=17%  Similarity=0.141  Sum_probs=93.1

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++.     ..|.++....++..++.+|..+|+|++|+..+++++..    + |.++
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~-P~~~   75 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----N-PTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C-TTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----C-cCCC
Confidence            345566677788999999999999875     35778888889999999999999999999999998853    3 5677


Q ss_pred             HHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWF------------------LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       390 ~~~~~l~~La~~~~~------------------~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      .....++.+|.++..                  +|++++|+..|+++++.     -|+++........+..+
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~  142 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFL  142 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHH
Confidence            777888888988875                  56788888888887654     36777666555444443

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=98.42  E-value=2.1e-07  Score=87.72  Aligned_cols=58  Identities=24%  Similarity=0.340  Sum_probs=41.4

Q ss_pred             cccccCCCcCCCeeE--Ee-C-----CEEEEEEecCCCCCCcccCChhhH--HHhhCCccccC--CCCCC
Q 012772          219 ISIINHSCLPNAVLV--FE-G-----RLAVVRAVQHVPKGAEGQFDDIQE--SAILEGYRCKD--DGCSG  276 (456)
Q Consensus       219 ~sl~NHSC~PN~~~~--f~-~-----~~~~vra~~~I~~Gee~~~~~~r~--~~l~~~f~C~C--~~C~~  276 (456)
                      +.++||||.||+...  +. +     .++.+.|+|+|++|||||++|-..  +....+|.|.|  +.|.+
T Consensus       217 aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~~~~~~~C~CGs~~CRg  286 (287)
T 3hna_A          217 SRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRH  286 (287)
T ss_dssp             GGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHHHTTTCCCCCCCTTCSC
T ss_pred             hheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcccccCCCcCEeeCCCCCCCC
Confidence            457799999999753  32 1     389999999999999999766422  22234788877  44543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.42  E-value=7.9e-06  Score=76.96  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=83.0

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .+...+..+..+|++++|+..|++++..     .|.+   ..++.+++.+|..+|+|++|+.++++++.+        +|
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p   69 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------DG   69 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CC
Confidence            3455666778899999999999999864     3444   567789999999999999999999999853        45


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      .....++.+|.++..+|++++|+..|++|+++--
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            5567899999999999999999999999998765

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=89.61  Aligned_cols=62  Identities=21%  Similarity=0.355  Sum_probs=45.3

Q ss_pred             ccccccCCCcCCCeeEE---eC--CEEEEEEecCCCCCCcccCChhhH----------HHh---hCCccccC--CCCCCC
Q 012772          218 VISIINHSCLPNAVLVF---EG--RLAVVRAVQHVPKGAEGQFDDIQE----------SAI---LEGYRCKD--DGCSGF  277 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f---~~--~~~~vra~~~I~~Gee~~~~~~r~----------~~l---~~~f~C~C--~~C~~~  277 (456)
                      .+.++||||.||+....   ++  .++.++|+|+|++|||||+++...          +.+   ...|.|.|  +.|.+.
T Consensus       205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG~  284 (290)
T 3bo5_A          205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTAF  284 (290)
T ss_dssp             GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCCCCTTCCSB
T ss_pred             chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccCCCcCCCcc
Confidence            45689999999998753   33  589999999999999998665321          111   23578888  578886


Q ss_pred             cc
Q 012772          278 LL  279 (456)
Q Consensus       278 ~~  279 (456)
                      +.
T Consensus       285 l~  286 (290)
T 3bo5_A          285 LP  286 (290)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.39  E-value=5.2e-06  Score=80.26  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|+..+++++.+     .|.+   ..++..++.++..+|++++|+.++++++.+        +|..
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~  284 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSV-----RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGY  284 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCc
Confidence            34455567789999999999998764     3444   567889999999999999999999999875        3555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT---NSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~---~h~~~~~~~~~l~~~~~e~~  448 (456)
                      ...++.+|.++..+|++++|+.+|++|+++.....|+   .++....+...|+.+...+.
T Consensus       285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            6789999999999999999999999999988766443   34556677777777765443

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=98.38  E-value=1.1e-07  Score=90.64  Aligned_cols=60  Identities=35%  Similarity=0.592  Sum_probs=33.4

Q ss_pred             ccccccCCCcCCCeeEEe-C-------CEEEEEEecCCCCCCcccCChhhH-----------HHhhCCccccC--CCCCC
Q 012772          218 VISIINHSCLPNAVLVFE-G-------RLAVVRAVQHVPKGAEGQFDDIQE-----------SAILEGYRCKD--DGCSG  276 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f~-~-------~~~~vra~~~I~~Gee~~~~~~r~-----------~~l~~~f~C~C--~~C~~  276 (456)
                      .+.++||||.||+..... +       .++.+.|+|+|++||||||++...           ..+...+.|.|  +.|.+
T Consensus       220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~CGs~~Crg  299 (302)
T 1ml9_A          220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRG  299 (302)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC------------------------------
T ss_pred             HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeCCCCcCcc
Confidence            457899999999976532 2       379999999999999999665311           01223578877  46766


Q ss_pred             C
Q 012772          277 F  277 (456)
Q Consensus       277 ~  277 (456)
                      .
T Consensus       300 ~  300 (302)
T 1ml9_A          300 Y  300 (302)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=98.37  E-value=2.3e-07  Score=87.91  Aligned_cols=41  Identities=29%  Similarity=0.429  Sum_probs=33.6

Q ss_pred             ccccccCCCcCCCeeE--E-e-----CCEEEEEEecCCCCCCcccCChh
Q 012772          218 VISIINHSCLPNAVLV--F-E-----GRLAVVRAVQHVPKGAEGQFDDI  258 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~--f-~-----~~~~~vra~~~I~~Gee~~~~~~  258 (456)
                      .+.++||||.||+...  + +     ..++.+.|+|+|++||||||++.
T Consensus       215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~  263 (300)
T 2r3a_A          215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQ  263 (300)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGG
T ss_pred             hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECC
Confidence            5678999999999874  3 2     14899999999999999996654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.37  E-value=1.4e-05  Score=77.90  Aligned_cols=125  Identities=14%  Similarity=0.067  Sum_probs=101.3

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCc-cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      .+..+..+|++++|+..+++++..    .++.++ ....++..++.++...|++++|+.++++++.+.+..  ++....+
T Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~   93 (373)
T 1hz4_A           20 RAQVAINDGNPDEAERLAKLALEE----LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYAL   93 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT----CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHH
Confidence            444556789999999999988753    233332 356678899999999999999999999999987763  3445667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      ..++++|.++..+|++++|+.++++|+++.....++++|........|+.+.
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999888877887777776666553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.36  E-value=5.2e-06  Score=72.14  Aligned_cols=91  Identities=18%  Similarity=0.113  Sum_probs=73.7

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+...+++++|++.++++..+     .|.+   ..+...++.+|..+|+|++|++++++++.+        +|.....
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~-----~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~  143 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIAL-----NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRA  143 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhH
Confidence            33445667888888888777643     3444   456778999999999999999999999865        4555678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++++|.++..+|++++|++.|++|+++
T Consensus       144 ~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          144 YQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            999999999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.34  E-value=2.5e-06  Score=76.97  Aligned_cols=96  Identities=17%  Similarity=0.097  Sum_probs=78.0

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIPV  379 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~-----------g~~~~A~~~~~~~l~~  379 (456)
                      ....+..+...|++++|+..+++++++     .|++   ..++.+++.++..+           |++++|+..+++++.+
T Consensus        42 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  113 (217)
T 2pl2_A           42 LYWLARTQLKLGLVNPALENGKTLVAR-----TPRY---LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV  113 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence            344566677889999999999999764     3444   56778899999999           9999999999999875


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          380 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       380 ~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                              .|.-...++.+|.++..+|++++|+..|++|+++-
T Consensus       114 --------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          114 --------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             --------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence                    34445677888999999999999999999988874

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.33  E-value=3e-06  Score=76.41  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=78.8

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+..+|++++|+..++++++     +.|.+   ..++..++.++..+|++++|+.++++++.+        .|..
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~   72 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERALK-----ENPQD---PEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRY   72 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT-----TSSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCc
Confidence            3455567788999999999998874     23444   667889999999999999999999999875        3445


Q ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFL-----------GDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~-----------g~~~eA~~~l~~Al~i  421 (456)
                      ...++.+|.++..+           |++++|+..|++|+++
T Consensus        73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  113 (217)
T 2pl2_A           73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV  113 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence            66789999999999           9999999999999986

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=1.2e-05  Score=73.06  Aligned_cols=104  Identities=10%  Similarity=0.081  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      +......+..+...|++++|++.+++++...      .+   ..++..++.++..+|++++|++++++++.+... .++.
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~   74 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRAD   74 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccc
Confidence            4556667777888999999999999998652      22   467789999999999999999999999987664 4567


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++..+..++.+|.++..+|++++|+.++++++.+
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  108 (258)
T 3uq3_A           75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE  108 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            7788999999999999999999999999999985

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=98.30  E-value=1.9e-07  Score=86.63  Aligned_cols=40  Identities=23%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             ccccccCCCcCCCeeEE-e----CCEEEEEEecCCCCCCcccCCh
Q 012772          218 VISIINHSCLPNAVLVF-E----GRLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f-~----~~~~~vra~~~I~~Gee~~~~~  257 (456)
                      .+.++||||.|||...+ .    +..+.++|+|+|++|||||+++
T Consensus       186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dY  230 (261)
T 2f69_A          186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY  230 (261)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECC
T ss_pred             ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEc
Confidence            35789999999998876 2    2344899999999999998654

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=98.30  E-value=1.8e-07  Score=88.82  Aligned_cols=40  Identities=28%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             ccccccCCCcCCCeeE--EeC------CEEEEEEecCCCCCCcccCCh
Q 012772          218 VISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~--f~~------~~~~vra~~~I~~Gee~~~~~  257 (456)
                      .+.++||||.||+...  +.+      .++.+.|+|+|++|||||+++
T Consensus       213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY  260 (299)
T 1mvh_A          213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDY  260 (299)
T ss_dssp             GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECC
T ss_pred             hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEc
Confidence            4568999999999763  322      489999999999999998654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.29  E-value=2e-05  Score=71.56  Aligned_cols=114  Identities=16%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|++++|+.++++++..        .|..
T Consensus       143 ~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~  206 (258)
T 3uq3_A          143 RLEGKEYFTKSDWPNAVKAYTEMIKR-----APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNF  206 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CHHH
Confidence            44555677889999999999998764     3443   467789999999999999999999999874        2444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~  443 (456)
                      ...++.+|.++..+|++++|..++++|+++.....  +.|...++...|+.+
T Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence            67799999999999999999999999999876542  445555566655543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.29  E-value=2.5e-05  Score=70.38  Aligned_cols=97  Identities=16%  Similarity=0.108  Sum_probs=80.6

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .+...+..+..+|++++|++.+++++.+.    ++.+.   .++..++.++..+|++++|+.++++++.        .+|
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~--------~~p   73 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLT----NNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIK--------KNY   73 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcc----CCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHH--------hCc
Confidence            34556667788999999999999998653    11333   4566799999999999999999999984        356


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .....++.+|.++..+|++++|+..+++|+++
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            67788999999999999999999999999976

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.28  E-value=3.6e-06  Score=69.06  Aligned_cols=84  Identities=10%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      -+|..+..+.++|..|...|+|++|++++++++.+        .|.-...++++|.++..+|++++|+..+++|+++   
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---   76 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---   76 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence            46788899999999999999999999999999864        3455678999999999999999999999999986   


Q ss_pred             hcCCCCchHHHHHHHHHHHH
Q 012772          425 THGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       425 ~~G~~h~~~~~~~~~l~~~~  444 (456)
                        .|+++.   ....++.+.
T Consensus        77 --~p~~~~---a~~~lg~~~   91 (126)
T 4gco_A           77 --DSKFIK---GYIRKAACL   91 (126)
T ss_dssp             --CTTCHH---HHHHHHHHH
T ss_pred             --hhhhhH---HHHHHHHHH
Confidence              445543   344444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.28  E-value=4.3e-06  Score=80.85  Aligned_cols=111  Identities=15%  Similarity=0.116  Sum_probs=93.2

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc---CCC
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY---PQF  387 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~---g~~  387 (456)
                      ....+..+...|++++|+..+++++.+     .|.+   ..++..++.+|..+|++++|+.++++++.+.....   +..
T Consensus       254 ~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  325 (368)
T 1fch_A          254 WNKLGATLANGNQSEEAVAAYRRALEL-----QPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG  325 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence            345566677889999999999998764     3433   56788999999999999999999999999876653   344


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  429 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~  429 (456)
                      ++..+..+..||.++..+|++++|...++++++++...+|.+
T Consensus       326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  367 (368)
T 1fch_A          326 GAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLP  367 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTCC
T ss_pred             cchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCCC
Confidence            677889999999999999999999999999999999998864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.28  E-value=8.4e-06  Score=73.54  Aligned_cols=112  Identities=19%  Similarity=0.105  Sum_probs=86.8

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCc----cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV----NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~----~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      ....+..+..+|++++|++.+++++++     .|.++    .++.++..++.++..+|++++|++++++++.+       
T Consensus        79 ~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------  146 (228)
T 4i17_A           79 YIGKSAAYRDMKNNQEYIATLTEGIKA-----VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------  146 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------
Confidence            344566677889999999999999764     35554    24577889999999999999999999999863       


Q ss_pred             CChH--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 012772          387 FHPL--LGLQYYTCGKLEWFLGDT---------------------------ENAIKSMTEAVEILRITHGTNSPFMKELI  437 (456)
Q Consensus       387 ~hp~--~~~~l~~La~~~~~~g~~---------------------------~eA~~~l~~Al~i~~~~~G~~h~~~~~~~  437 (456)
                       +|.  ....+++||.++..+|+.                           ++|+.+|++|+++     .|+++.+..++
T Consensus       147 -~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l  220 (228)
T 4i17_A          147 -TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNRTEIKQMQ  220 (228)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             -CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHH
Confidence             677  788899999999888887                           6777777777764     57777666554


Q ss_pred             HHH
Q 012772          438 LKL  440 (456)
Q Consensus       438 ~~l  440 (456)
                      ..+
T Consensus       221 ~~i  223 (228)
T 4i17_A          221 DQV  223 (228)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.28  E-value=1.6e-05  Score=75.89  Aligned_cols=115  Identities=18%  Similarity=0.181  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      +......+..+...|++++|++.+++++..     .|.++. ...++..++.++..+|++++|+.++++++..       
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------  301 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-------  301 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            334455677788899999999999988764     344443 4566788999999999999999999999875       


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                       +|.....++.+|.++..+|++++|...|++|+++     .|+++.....+..+
T Consensus       302 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~  349 (359)
T 3ieg_A          302 -EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-----NENDQQIREGLEKA  349 (359)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHH
T ss_pred             -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHHHHHHHHH
Confidence             3444668999999999999999999999999975     46666655444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.28  E-value=1.7e-05  Score=68.42  Aligned_cols=115  Identities=7%  Similarity=0.016  Sum_probs=91.4

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHHHHHhcCC
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELEDW--KEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~-~~~~g~~--~~A~~~~~~~l~~~e~~~g~  386 (456)
                      .....+..+...|++++|+..+++++.+.     |.+   ..++..++.+ +...|++  ++|+.++++++..       
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-------  110 (177)
T 2e2e_A           46 QWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAALATVLYYQASQHMTAQTRAMIDKALAL-------  110 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-------
Confidence            34456666778899999999999998653     444   4567788988 8899999  9999999999864       


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                       +|.....++.+|.++..+|++++|+..+++|+++     .|+++....++..+..++.
T Consensus       111 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~i~~~~~  163 (177)
T 2e2e_A          111 -DSNEITALMLLASDAFMQANYAQAIELWQKVMDL-----NSPRINRTQLVESINMAKL  163 (177)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTSCHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHHHHH
Confidence             2333567899999999999999999999999875     5566777777777776654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.28  E-value=4.4e-06  Score=65.39  Aligned_cols=93  Identities=17%  Similarity=0.112  Sum_probs=74.9

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+..+|++++|+..+++++..     .|.+   ..++..++.++..+|++++|++++++++..    .| . .....
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~-~-~~~~~   77 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQL-----DPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINV----IE-D-EYNKD   77 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----SC-C-TTCHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHh-----CcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----Cc-c-cchHH
Confidence            344566789999999999998764     2433   456789999999999999999999999864    22 2 11456


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFL-GDTENAIKSMTEAVE  420 (456)
Q Consensus       394 ~l~~La~~~~~~-g~~~eA~~~l~~Al~  420 (456)
                      .++.+|.++..+ |++++|++++++++.
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            789999999999 999999999999875

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=98.27  E-value=5.6e-07  Score=91.64  Aligned_cols=91  Identities=12%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             CCCHHHHHHHHhhHhccccccccCCCCcceeeeccccccccCCCcCCCee-EEeCCEEEEEEecCCCCCCccc--CChhh
Q 012772          183 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVL-VFEGRLAVVRAVQHVPKGAEGQ--FDDIQ  259 (456)
Q Consensus       183 ~~~~~~l~~~~~~~~~N~~~i~~~~~~~~g~glyp~~sl~NHSC~PN~~~-~f~~~~~~vra~~~I~~Gee~~--~~~~r  259 (456)
                      .++.+.+.-.++.+.+++|.+...++...+.+|+|.+.|+||||.||... .++++.++++|.++|++||||+  |.+..
T Consensus       237 ~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~~  316 (497)
T 3smt_A          237 SFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRS  316 (497)
T ss_dssp             CCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSCC
T ss_pred             ccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCCC
Confidence            46788888888999999999877666667899999999999999996543 3457889999999999999975  76644


Q ss_pred             HHHhh--CCccccCCC
Q 012772          260 ESAIL--EGYRCKDDG  273 (456)
Q Consensus       260 ~~~l~--~~f~C~C~~  273 (456)
                      ...|+  .||.+..-.
T Consensus       317 n~~Ll~~YGFv~~~Np  332 (497)
T 3smt_A          317 NAEFVIHSGFFFDNNS  332 (497)
T ss_dssp             HHHHHHHHSCCCTTCT
T ss_pred             hHHHHHHCCCCCCCCC
Confidence            44443  488876433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.26  E-value=1.1e-05  Score=73.53  Aligned_cols=91  Identities=9%  Similarity=0.051  Sum_probs=50.3

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      .+...|++++|++.+++++..     .|.+   ..++..++.++..+|++++|++++++++.      .+.+|.....++
T Consensus        80 ~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~  145 (252)
T 2ho1_A           80 VFQTEMEPKLADEEYRKALAS-----DSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFE  145 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH-----CcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHH
Confidence            344455555555555555432     1222   34445556666666666666666655543      234555556666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          397 TCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       397 ~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .+|.++..+|++++|+.++++++++
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~  170 (252)
T 2ho1_A          146 NLGLVSLQMKKPAQAKEYFEKSLRL  170 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            6666666666666666666666553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.25  E-value=4.8e-06  Score=80.77  Aligned_cols=122  Identities=13%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc--CCC-------CccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 012772          306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY--HPF-------SVNLMQTREKLIKILMELEDWKEALAYCQLT  376 (456)
Q Consensus       306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l--~p~-------h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~  376 (456)
                      ..+......+..+..+|++++|+..|++++.+.....  ...       ......++.+++.+|..+|+|++|+.+++++
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455566788888999999999999999986532110  000       0001137889999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          377 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       377 l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                      |.+        +|.....++++|.++..+|++++|+..|++|+++-     |+++.....+..+
T Consensus       257 l~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-----p~~~~a~~~L~~l  307 (338)
T 2if4_A          257 LTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-----PDDKAIRRELRAL  307 (338)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCHHHHHHHHHH
Confidence            974        34456789999999999999999999999998763     4555554444333

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=98.25  E-value=2.1e-07  Score=88.62  Aligned_cols=40  Identities=20%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             ccccccCCCcCCCeeEE-eC---CE-EEEEEecCCCCCCcccCCh
Q 012772          218 VISIINHSCLPNAVLVF-EG---RL-AVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f-~~---~~-~~vra~~~I~~Gee~~~~~  257 (456)
                      .++++||||.|||...+ ..   +. +.|+|+|+|++|||||+++
T Consensus       240 ~ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Y  284 (293)
T 1h3i_A          240 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY  284 (293)
T ss_dssp             CGGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEE
T ss_pred             ceeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEec
Confidence            35688999999999886 22   33 5899999999999998653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.25  E-value=1.3e-05  Score=77.53  Aligned_cols=93  Identities=14%  Similarity=0.053  Sum_probs=71.1

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+...|++++|++.+++++.+     .|.+. ...++..++.+|..+|++++|++++++++.+        +|.....
T Consensus       184 ~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  249 (365)
T 4eqf_A          184 SKSPVDSSVLEGVKELYLEAAHQ-----NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSL  249 (365)
T ss_dssp             -----CCHHHHHHHHHHHHHHHH-----SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHh-----CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            33445567777777777777653     34421 2456788999999999999999999999875        3444668


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++.+|.++..+|++++|+.++++|+++
T Consensus       250 ~~~l~~~~~~~g~~~~A~~~~~~al~~  276 (365)
T 4eqf_A          250 WNRLGATLANGDRSEEAVEAYTRALEI  276 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999987

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.25  E-value=9.4e-06  Score=72.13  Aligned_cols=104  Identities=10%  Similarity=-0.053  Sum_probs=83.2

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh-------
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV-------  383 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~-------  383 (456)
                      ....+..+...|++++|++.+++++.+     .|.+   ..++.+++.+|..+|++++|++++++++......       
T Consensus        40 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  111 (213)
T 1hh8_A           40 CFNIGCMYTILKNMTEAEKAFTRSINR-----DKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  111 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            344556677889999999999998764     2333   5778899999999999999999999998742210       


Q ss_pred             cC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          384 YP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       384 ~g-~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      .| ..+|.....++++|.++..+|++++|+..+++|+++.
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A          112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            00 1557778999999999999999999999999998763

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.24  E-value=1.6e-05  Score=70.67  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=78.3

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|++.+++++       .|    ...++.+++.+|..+|++++|+.++++++.+        +|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-------~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~   68 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ-------DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK   68 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS-------SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc-------CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence            34556677778999999999887662       22    2468899999999999999999999999875        24


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      .....++++|.++..+|++++|+..+++|+++.
T Consensus        69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            456789999999999999999999999999864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.23  E-value=1.8e-05  Score=72.10  Aligned_cols=94  Identities=9%  Similarity=-0.063  Sum_probs=76.0

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+...|++++|++.+++++.      .+.++....++..++.++..+|++++|++++++++..    .    |...
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~----~~~~  175 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL----N----RNQP  175 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C----SCCH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C----cccH
Confidence            345556788999999998887754      3456667788889999999999999999999998764    2    2335


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      ..++.+|.++..+|++++|..+++++++
T Consensus       176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~  203 (252)
T 2ho1_A          176 SVALEMADLLYKEREYVPARQYYDLFAQ  203 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6788999999999999999999999876

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=98.22  E-value=5.9e-07  Score=75.95  Aligned_cols=39  Identities=15%  Similarity=0.156  Sum_probs=34.7

Q ss_pred             cccccCCCcC---CCeeEEeCCEEEEEEecCCCCCCcccCCh
Q 012772          219 ISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       219 ~sl~NHSC~P---N~~~~f~~~~~~vra~~~I~~Gee~~~~~  257 (456)
                      +.++||||.|   |+...-.++++.++|+|+|++|||++|++
T Consensus       100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY  141 (149)
T 2qpw_A          100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY  141 (149)
T ss_dssp             GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECC
T ss_pred             eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEcc
Confidence            4578999999   99987678899999999999999999765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.21  E-value=2.9e-05  Score=68.91  Aligned_cols=112  Identities=11%  Similarity=0.049  Sum_probs=78.5

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ..+..+...|++++|++.+++++..     .|.+   ..++..++.++... |++++|+.++++++.      .+.+|..
T Consensus        47 ~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~  112 (225)
T 2vq2_A           47 VRAEIYQYLKVNDKAQESFRQALSI-----KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTP  112 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcch
Confidence            3455566778888888888777653     2333   44667788888888 888888888888775      3466777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      ...++.+|.++...|++++|+.++++++++     .++++   .....++.+...
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~  159 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQFP---PAFKELARTKML  159 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCc---hHHHHHHHHHHH
Confidence            778888888888888888888888888764     34443   334455544443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.21  E-value=2.9e-05  Score=66.47  Aligned_cols=92  Identities=14%  Similarity=0.075  Sum_probs=70.6

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|++++++++..        +|....
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~  111 (186)
T 3as5_A           48 LGIAYVKTGAVDRGTELLERSLAD-----APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFN  111 (186)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHH
Confidence            444556678899998888888654     2333   456678888888999999999998888764        233456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .++.+|.++..+|++++|+.++++++++
T Consensus       112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A          112 VRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            7788899999999999999999988875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.20  E-value=2.5e-05  Score=62.80  Aligned_cols=92  Identities=24%  Similarity=0.335  Sum_probs=70.6

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|+.++++++..     .   |....
T Consensus         7 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~   70 (136)
T 2fo7_A            7 LGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----D---PRSAE   70 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C---TTCHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHc-----CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----C---CCchH
Confidence            344555678999999988888653     3333   456677888999999999999999888754     1   22345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .++.+|.++...|++++|++++++++.+
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            6788899999999999999999998875

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.20  E-value=1.6e-05  Score=73.22  Aligned_cols=101  Identities=13%  Similarity=0.135  Sum_probs=82.4

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|++.+++++.+     .|.+   ..++..++.+|...|++++|+.++++++.+        .|
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~  108 (275)
T 1xnf_A           45 LLYERGVLYDSLGLRALARNDFSQALAI-----RPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DP  108 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------Cc
Confidence            3445666777899999999999998764     3443   567789999999999999999999999875        23


Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 012772          390 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  431 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~  431 (456)
                      .....++.+|.++..+|++++|++++++++++     .|+++
T Consensus       109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~  145 (275)
T 1xnf_A          109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDP  145 (275)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCh
Confidence            33578899999999999999999999999874     45555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.19  E-value=3.5e-05  Score=68.36  Aligned_cols=95  Identities=9%  Similarity=0.017  Sum_probs=75.9

Q ss_pred             HHHHhhhhc-CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          313 KKTLALTSC-GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       313 ~~a~~~~~~-g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ..+..+... |++++|++.+++++.      .|.++....++..++.++...|++++|+.++++++..        .|..
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~  146 (225)
T 2vq2_A           81 NYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQF  146 (225)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTC
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence            345556678 899999998888764      3566777788889999999999999999999888764        2233


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...++.+|.++..+|++++|..++++++++
T Consensus       147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          147 PPAFKELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567888999999999999999999998875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.18  E-value=2.5e-05  Score=62.27  Aligned_cols=102  Identities=19%  Similarity=0.172  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 012772          326 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL  405 (456)
Q Consensus       326 ~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~  405 (456)
                      +|++.++++++     ..|.+   ..++..++.+|..+|++++|+.++++++.+        .|..+..++.||.++..+
T Consensus         3 ~a~~~~~~al~-----~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLA-----QGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHT-----TTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----hCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence            45555665543     23444   467889999999999999999999999864        344466789999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Q 012772          406 GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       406 g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~  445 (456)
                      |++++|+..|++|+++.... | +.....++...|..+..
T Consensus        67 g~~~~A~~~~~~al~~~~~~-~-~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQSR-G-DQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccc-c-cHHHHHHHHHHHHHhcc
Confidence            99999999999999987653 2 22233444444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.17  E-value=2.8e-05  Score=70.24  Aligned_cols=122  Identities=9%  Similarity=-0.009  Sum_probs=92.9

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH------------------ccCHHHHHHH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME------------------LEDWKEALAY  372 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~------------------~g~~~~A~~~  372 (456)
                      ....+..+...|++++|++.++++++     ..|.++....++..++.++..                  +|++++|+..
T Consensus        44 ~~~lg~~~~~~~~~~~A~~~~~~~l~-----~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           44 QLDLIYAYYKNADLPLAQAAIDRFIR-----LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH-----HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            44556677889999999999999875     458888877788888887765                  6799999999


Q ss_pred             HHHHHHHHHHhcCCCChHHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772          373 CQLTIPVYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  438 (456)
Q Consensus       373 ~~~~l~~~e~~~g~~hp~~~--------------~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~  438 (456)
                      +++++..    +| +++...              ...+.+|.++..+|++++|+..|+++++..     |++|...+.+.
T Consensus       119 ~~~~l~~----~P-~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~  188 (225)
T 2yhc_A          119 FSKLVRG----YP-NSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALP  188 (225)
T ss_dssp             HHHHHTT----CT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHH
T ss_pred             HHHHHHH----Cc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHH
Confidence            9988753    33 444322              223678999999999999999999998864     56777777777


Q ss_pred             HHHHHHHHH
Q 012772          439 KLEEAQAEA  447 (456)
Q Consensus       439 ~l~~~~~e~  447 (456)
                      .++.+..++
T Consensus       189 ~l~~~~~~~  197 (225)
T 2yhc_A          189 LMENAYRQM  197 (225)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            777775443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.15  E-value=1.8e-05  Score=72.93  Aligned_cols=97  Identities=15%  Similarity=0.060  Sum_probs=65.6

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...|..+...|++++|+..++++++.     .|.+..   ++..++.+|..+|++++|++++++++.     .|.+....
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~   73 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPY---IYNRRAVCYYELAKYDLAQKDIETYFS-----KVNATKAK   73 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCST---THHHHHHHHHHTTCHHHHHHHHHHHHT-----TSCTTTCC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHHHhhHHHHHHHHHHHHh-----ccCchhHH
Confidence            44555666777888888877777642     344433   455677777778888888887777764     23333334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +..++.+|.++..+|++++|++++++|+++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~  103 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR  103 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            667777788888888888888888877774

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.13  E-value=2.6e-05  Score=73.67  Aligned_cols=107  Identities=9%  Similarity=0.029  Sum_probs=86.9

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC-hHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-PLLG  392 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h-p~~~  392 (456)
                      .+..+...|++++|++.+++++..     .|.+   ..++..++.++..+|++++|+.++++++.......+... |...
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALSI-----APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence            455566789999999999888653     3444   567789999999999999999999999998776655433 5667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  433 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~  433 (456)
                      ..++.+|.++..+|++++|+.++++|+++     .|+++..
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~  272 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVL-----IPQNAST  272 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCSHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----CccchHH
Confidence            78999999999999999999999999986     3555544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.12  E-value=6e-05  Score=74.93  Aligned_cols=112  Identities=18%  Similarity=0.169  Sum_probs=90.1

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      .....+..+...|++++|++.+++++.+     .|.++. ...++..++.++..+|++++|+.++++++.+        +
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~  325 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------E  325 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence            3345577778889999999999998763     455544 3678899999999999999999999999875        4


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  439 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~  439 (456)
                      |.....++.+|.++..+|++++|+..+++|+++     .|+++.....+..
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~  371 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQQIREGLEK  371 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcchHHHHHHHHH
Confidence            555678999999999999999999999999983     5666665544443

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=98.11  E-value=2.5e-06  Score=85.94  Aligned_cols=86  Identities=20%  Similarity=0.219  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHhhHhccccccccCC----CCcceeeeccccccccCCCcCCCeeEEeCCEEEEEEecCCCCCCccc--CCh
Q 012772          184 ISINEIAENFSKLACNAHTICNSE----LRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEGQ--FDD  257 (456)
Q Consensus       184 ~~~~~l~~~~~~~~~N~~~i~~~~----~~~~g~glyp~~sl~NHSC~PN~~~~f~~~~~~vra~~~I~~Gee~~--~~~  257 (456)
                      ++.+.....++.+.+-+|.+...+    ....+.+|.|.+.|+||||.||+.+.|+++.++++|.++|++||||+  |.+
T Consensus       184 ~t~e~f~wA~~~v~SRsf~~~~~~~~~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~  263 (449)
T 3qxy_A          184 RSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQ  263 (449)
T ss_dssp             CCHHHHHHHHHHHHHHCBCCCCC-----CCCCCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSS
T ss_pred             CcHHHHHHHHHHHHHHhcccccCcccccccCCceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCC
Confidence            566666666666666667664321    23567899999999999999999999999999999999999999975  776


Q ss_pred             hhHHHhh--CCccc
Q 012772          258 IQESAIL--EGYRC  269 (456)
Q Consensus       258 ~r~~~l~--~~f~C  269 (456)
                      .....|+  .||..
T Consensus       264 ~~n~~ll~~YGF~~  277 (449)
T 3qxy_A          264 MANWQLIHMYGFVE  277 (449)
T ss_dssp             CCHHHHHHHHSCCC
T ss_pred             CCHHHHHHhCCCCC
Confidence            4444443  47765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.11  E-value=2.1e-05  Score=81.66  Aligned_cols=95  Identities=17%  Similarity=-0.000  Sum_probs=79.6

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+..+|++++|++.+++++++     .|++   ..++.+++.+|..+|++++|++++++++.+        +|.
T Consensus        26 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~   89 (568)
T 2vsy_A           26 WLMLADAELGMGDTTAGEMAVQRGLAL-----HPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDA--------APE   89 (568)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCC
Confidence            345566677789999999999988753     3444   667889999999999999999999999875        344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ....+++||.++..+|++++|++.|++|+++
T Consensus        90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  120 (568)
T 2vsy_A           90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQL  120 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999987

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.10  E-value=4.7e-05  Score=61.16  Aligned_cols=93  Identities=24%  Similarity=0.334  Sum_probs=74.6

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|++++++++..     .   |...
T Consensus        40 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~  103 (136)
T 2fo7_A           40 NLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----D---PRSA  103 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----C---TTCH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHH-----CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----C---CCCh
Confidence            3455566789999999999888753     3433   456778999999999999999999998864     2   2234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ..++.+|.++...|++++|..++++++++
T Consensus       104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A          104 EAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            57788999999999999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.10  E-value=3.6e-05  Score=68.69  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH---
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL---  390 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~---  390 (456)
                      .+..+...|++++|+..+++++++     .|++   ..++.+++.++..+|++++|+.++++++.+    . |+++.   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~-P~~~~a~~  126 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK-----APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL----E-ADNLAANI  126 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----C-TTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCHHHHH
Confidence            566677899999999999999864     3554   567889999999999999999999999874    1 22221   


Q ss_pred             -HHH----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772          391 -LGL----------------------------QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  441 (456)
Q Consensus       391 -~~~----------------------------~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~  441 (456)
                       +|.                            .++.+|..+..+|++++|+..|++|+++.     |+ +....++..+.
T Consensus       127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~-~~~~~~l~~i~  200 (208)
T 3urz_A          127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF-----PS-TEAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS-----CC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC-HHHHHHHHHHH
Confidence             111                            22334445555677788888888887653     33 33555666666


Q ss_pred             HHHHHH
Q 012772          442 EAQAEA  447 (456)
Q Consensus       442 ~~~~e~  447 (456)
                      +.+.++
T Consensus       201 ~~~~~~  206 (208)
T 3urz_A          201 RIEKEV  206 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.09  E-value=2.7e-05  Score=79.12  Aligned_cols=94  Identities=12%  Similarity=0.026  Sum_probs=78.2

Q ss_pred             CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~--------g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      |++++|++.+++++++     .|++   ..++.+++.+|..+        |++++|++++++++.+     .+.++..+.
T Consensus       193 g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~  259 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQM-----DVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRKASSNPD  259 (474)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGGGGGCHH
T ss_pred             hhHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCCcccCHH
Confidence            8999999999999864     3444   56778999999999        9999999999999976     121337788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  433 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~  433 (456)
                      .++++|.++..+|++++|+..|++|+++     .|+++..
T Consensus       260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a  294 (474)
T 4abn_A          260 LHLNRATLHKYEESYGEALEGFSQAAAL-----DPAWPEP  294 (474)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence            9999999999999999999999999986     4556543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.09  E-value=6.3e-05  Score=65.09  Aligned_cols=99  Identities=19%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------------
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------------  381 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e------------  381 (456)
                      .+..+..+|++++|++.|++++++     .|++   ..++..++.+|..+|++++|+..+.+++....            
T Consensus        11 lG~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A           11 IGDKKRTKGDFDGAIRAYKKVLKA-----DPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            344455667777777777777653     2443   34556666666666666666666655433210            


Q ss_pred             ---------------HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          382 ---------------RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       382 ---------------~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                                     +.. ..+|.-...+..+|.++..+|++++|++.|++++++
T Consensus        83 ~~~~~~~~~a~~~~~~a~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~  136 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAI-ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI  136 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence                           000 013444556788899999999999999999999876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.08  E-value=4.2e-05  Score=57.56  Aligned_cols=81  Identities=23%  Similarity=0.319  Sum_probs=64.2

Q ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 012772          348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  427 (456)
Q Consensus       348 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G  427 (456)
                      ....++..++.++...|++++|+.++++++..        +|.....++.+|.++..+|++++|+.++++|+++     .
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~   73 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----D   73 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----C
Confidence            34567788999999999999999999999864        2334567899999999999999999999999986     3


Q ss_pred             CCCchHHHHHHHHHHHH
Q 012772          428 TNSPFMKELILKLEEAQ  444 (456)
Q Consensus       428 ~~h~~~~~~~~~l~~~~  444 (456)
                      |+++.   ....++.+.
T Consensus        74 p~~~~---~~~~l~~~~   87 (91)
T 1na3_A           74 PNNAE---AKQNLGNAK   87 (91)
T ss_dssp             TTCHH---HHHHHHHHH
T ss_pred             CCCHH---HHHHHHHHH
Confidence            45543   344444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.08  E-value=1.2e-05  Score=62.79  Aligned_cols=71  Identities=25%  Similarity=0.250  Sum_probs=59.8

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      |.-..++..++.+|..+|+|++|+.++++++.+        .|.....++.||.++..+|++++|+..|++|+++....
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            334567889999999999999999999999874        23334489999999999999999999999999986653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.07  E-value=6.5e-05  Score=70.78  Aligned_cols=117  Identities=13%  Similarity=0.026  Sum_probs=87.1

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++..        .|..
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~  239 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVEL-----RPDD---AQLWNKLGATLANGNRPQEALDAYNRALDI--------NPGY  239 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCC
Confidence            34455567789999999999988764     3444   467789999999999999999999999864        2334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP----FMKELILKLEEAQ  444 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~----~~~~~~~~l~~~~  444 (456)
                      ...++.+|.++..+|++++|.+++++|+++....-++.+.    ....+...++.+.
T Consensus       240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (327)
T 3cv0_A          240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL  296 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence            5578899999999999999999999999886553222221    1444555555554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.07  E-value=3.6e-05  Score=69.37  Aligned_cols=109  Identities=14%  Similarity=0.092  Sum_probs=82.5

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+...|++++|++.+++++..     .|.+   ..++..++.++...|++++|+.++++++..        +|...
T Consensus       130 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~  193 (243)
T 2q7f_A          130 MLGTVLVKLEQPKLALPYLQRAVEL-----NEND---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHA  193 (243)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccH
Confidence            3455566789999999999888754     2333   456788999999999999999999988764        23335


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  442 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~  442 (456)
                      ..++.+|.++..+|++++|..++++++++     .|+++.....+..|..
T Consensus       194 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          194 DAFYNAGVTYAYKENREKALEMLDKAIDI-----QPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CcchHHHHHHHHHHHh
Confidence            57899999999999999999999999874     5677766655554443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.06  E-value=3.6e-05  Score=65.82  Aligned_cols=94  Identities=10%  Similarity=0.020  Sum_probs=76.2

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|++.+++++.     ..|.+   ..++..++.++...|++++|+.++++++..        .|..
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~   75 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYD-----ADAFD---VDVALHLGIAYVKTGAVDRGTELLERSLAD--------APDN   75 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCC-----TTSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH-----hCccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC
Confidence            4455566678999999988776643     23333   577889999999999999999999999875        3444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...+..+|.++...|++++|.+++++++.+
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  105 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEA  105 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            567899999999999999999999999986

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.06  E-value=6.4e-05  Score=67.67  Aligned_cols=91  Identities=15%  Similarity=0.024  Sum_probs=50.9

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+...|++++|++.+++++..     .|.+   ..++..++.++..+|++++|+.++++++..        .|.....
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~  161 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRA-----GMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEA  161 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-----TCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHH
Confidence            33344556666666666555442     2222   234555666666666666666666666543        1222335


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++.+|.++...|++++|+++++++++.
T Consensus       162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          162 RFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566666666666666666666666554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.06  E-value=1.5e-05  Score=73.48  Aligned_cols=91  Identities=10%  Similarity=-0.018  Sum_probs=76.2

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  398 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L  398 (456)
                      ..+|++++|++.++++++.    .+..++....++..++.++...|++++|+.++++++..        +|.....++.+
T Consensus        16 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l   83 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILAS----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYL   83 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhc----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHH
Confidence            4567889999988888653    22334567889999999999999999999999999875        34445678999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Q 012772          399 GKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       399 a~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      |.++...|++++|++++++|+++
T Consensus        84 a~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           84 GIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhc
Confidence            99999999999999999999986

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.05  E-value=5.3e-05  Score=72.26  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      ++.....+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|++++|+.++++++..        
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            445566777788899999999999998763     3444   467889999999999999999999999865        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .|.....++.+|.++...|++++|+..+++++++
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  100 (359)
T 3ieg_A           67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS  100 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred             CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            3444477899999999999999999999999864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.04  E-value=8.4e-05  Score=70.01  Aligned_cols=103  Identities=13%  Similarity=0.028  Sum_probs=81.1

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV----------  379 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~----------  379 (456)
                      .....|..+..+|++++|+..|+++++.     .|++   ..++..|+.++..+|++++|+.++++++..          
T Consensus       119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          119 LXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            3455666677889999999999999764     3555   467889999999999999999998876431          


Q ss_pred             -----------------HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          380 -----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       380 -----------------~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                                       +++.. ..+|.-...+++||.++..+|++++|+..|+++++.
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al-~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQV-AENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHH-hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence                             11111 125666678999999999999999999999999986

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.04  E-value=2.3e-05  Score=79.63  Aligned_cols=94  Identities=16%  Similarity=0.090  Sum_probs=79.8

Q ss_pred             HHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          311 LSKKTLALTSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       311 l~~~a~~~~~~g~~-~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      ....+..+...|++ ++|++.+++++++     .|.   ...++..++.+|..+|++++|++++++++.+        .|
T Consensus       105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p  168 (474)
T 4abn_A          105 LMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--------CK  168 (474)
T ss_dssp             HHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------CC
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CC
Confidence            34556667789999 9999999999864     243   3578899999999999999999999999864        23


Q ss_pred             HHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLEWFL---------GDTENAIKSMTEAVEI  421 (456)
Q Consensus       390 ~~~~~l~~La~~~~~~---------g~~~eA~~~l~~Al~i  421 (456)
                      . ...+++||.++..+         |++++|+..|++|+++
T Consensus       169 ~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  208 (474)
T 4abn_A          169 N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM  208 (474)
T ss_dssp             C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence            3 48899999999999         9999999999999986

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.04  E-value=3.3e-05  Score=60.58  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  429 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~  429 (456)
                      ...+..++.++...|+|++|++++++++.+        .|.....++++|.++..+|++++|++.+++|+++     .|+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence            466788999999999999999999999875        3333567899999999999999999999999875     344


Q ss_pred             C---chHHHHHHHHHHHHHHHHhhhcc
Q 012772          430 S---PFMKELILKLEEAQAEASYKLSS  453 (456)
Q Consensus       430 h---~~~~~~~~~l~~~~~e~~~~~~~  453 (456)
                      +   ......+..++.+...+...+.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVGSVQIP   97 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            4   12255667777776666554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.03  E-value=1.2e-05  Score=74.09  Aligned_cols=97  Identities=13%  Similarity=-0.001  Sum_probs=73.3

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|++.+++++.     .+++......++..++.++..+|++++|++++++++..        +|..
T Consensus        41 ~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~  107 (272)
T 3u4t_A           41 NRRAVCYYELAKYDLAQKDIETYFS-----KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTR  107 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT-----TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh-----ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cccc
Confidence            3445556678899999888888764     22333445777888999999999999999999888863        2333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...+..+|.++..+|++++|+.++++|+++
T Consensus       108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A          108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence            457888888888889988888888888775

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.02  E-value=3.1e-05  Score=65.92  Aligned_cols=97  Identities=12%  Similarity=0.151  Sum_probs=70.8

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW----------KEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~----------~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      .|++|++.+++++++     .|++   ..++.+++.++..++++          ++|+..++++|.+        .|...
T Consensus        17 ~feeA~~~~~~Ai~l-----~P~~---aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP~~~   80 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS-----NPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DPKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------CcCcH
Confidence            567777777777653     3444   56778888888888765          4777777777754        45556


Q ss_pred             HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLG-----------DTENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       393 ~~l~~La~~~~~~g-----------~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                      ..+++||.+|..+|           ++++|+++|++|+++     -|+++.+...+...
T Consensus        81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al~~~  134 (158)
T 1zu2_A           81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            67889999998775           899999999999987     56777666555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.02  E-value=5.6e-05  Score=71.50  Aligned_cols=109  Identities=14%  Similarity=0.117  Sum_probs=87.1

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  399 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La  399 (456)
                      ..|++++|+..+++++..     .|.+   ..++.+++.++..+|+|++|+.++++++..     .|++|.   .++++|
T Consensus       178 ~~~~~~eA~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~---~l~~l~  241 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADK-----CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPE---TLINLV  241 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHH-----SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHH
T ss_pred             CchHHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHH
Confidence            458999999999988753     3444   567789999999999999999999999864     245554   589999


Q ss_pred             HHHHHcCCHHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          400 KLEWFLGDTEN-AIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       400 ~~~~~~g~~~e-A~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      .++..+|+..+ +..+++++++     ..|+||.+.++..+......-+..
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~-----~~P~~~~~~d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKD-----AHRSHPFIKEYRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHHHHH
Confidence            99999999976 5688888875     579999999988777766554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.01  E-value=2.8e-05  Score=76.02  Aligned_cols=107  Identities=20%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+...|++++|++.+++++++     .|.+   ..++..++.++...|++++|++++++++..        +|....
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~  340 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRL-----CPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAA  340 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHH
Confidence            344455567777777776666543     2333   344566777777777777777777766542        345566


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      .++.||.++..+|++++|+..|++|+++        +|...+.+..|+.+.
T Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~  383 (388)
T 1w3b_A          341 AHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHH
Confidence            7777777777778888888777777753        233344555555443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.01  E-value=1.8e-05  Score=74.75  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=86.5

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ...+..+...|++++|+..+++++.+....-.+.. +....++..++.++..+|++++|+.++++++.+        +|.
T Consensus       197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~  268 (330)
T 3hym_B          197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQ  268 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------Ccc
Confidence            34555667889999999999999887654433322 334567889999999999999999999999875        233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                      ....++.+|.++..+|++++|..++++|+++     .|+++...
T Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~  307 (330)
T 3hym_B          269 NASTYSAIGYIHSLMGNFENAVDYFHTALGL-----RRDDTFSV  307 (330)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-----CSCCHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHcc-----CCCchHHH
Confidence            4567899999999999999999999999864     45665444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.00  E-value=3.6e-05  Score=72.60  Aligned_cols=113  Identities=12%  Similarity=0.022  Sum_probs=90.4

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC---
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF---  387 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~---  387 (456)
                      ....+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|++++|++++++++.......+..   
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  280 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDI-----NPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEA  280 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccc
Confidence            344566677889999999999998764     3433   45678899999999999999999999998654322222   


Q ss_pred             -ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 012772          388 -HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  431 (456)
Q Consensus       388 -hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~  431 (456)
                       +......+..+|.++..+|++++|...++++++++...+|-++.
T Consensus       281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  325 (327)
T 3cv0_A          281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSM  325 (327)
T ss_dssp             CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTSSCC
T ss_pred             hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhHHHh
Confidence             22267889999999999999999999999999999999887663

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=7.2e-05  Score=74.09  Aligned_cols=78  Identities=15%  Similarity=0.059  Sum_probs=43.0

Q ss_pred             CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      .+...++..+|+.+|..+|+|.+|+.++++++.....  ..+++..+..+..+|.++..+|++++|..+|++|+.+....
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  208 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK--LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI  208 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence            3444555555555666666666666655555443221  24555555566666666666666666666666665555443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.97  E-value=0.00017  Score=71.30  Aligned_cols=117  Identities=13%  Similarity=-0.045  Sum_probs=98.7

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..|..+..+|+|++|+..+++++....+  ..+++..+.++..++.+|..+|+|++|..++++++.+.... +..+...+
T Consensus       140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~  216 (434)
T 4b4t_Q          140 KLATLHYQKKQYKDSLALINDLLREFKK--LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI-YCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTT--SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHH
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC-CCchHHHH
Confidence            4455567789999999999998765443  34577889999999999999999999999999999987765 44556778


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  432 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~  432 (456)
                      ..+..+|.++...|++.+|..++.+|+++....-..++..
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~  256 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYE  256 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence            9999999999999999999999999999998876666643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.96  E-value=4.5e-05  Score=74.50  Aligned_cols=91  Identities=14%  Similarity=0.111  Sum_probs=58.8

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      +..+...|++++|++.+++++..     .|   ....++.+++.++...|++++|+.++++++.+        +|.....
T Consensus       142 ~~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  205 (388)
T 1w3b_A          142 GNLLKALGRLEEAKACYLKAIET-----QP---NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDA  205 (388)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh-----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHH
Confidence            33445567777777776666542     22   23455666777777777777777777777653        2334456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +.++|.++...|++++|+..+++|+++
T Consensus       206 ~~~lg~~~~~~~~~~~A~~~~~~al~~  232 (388)
T 1w3b_A          206 YINLGNVLKEARIFDRAVAAYLRALSL  232 (388)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            777777777777777777777777764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.93  E-value=0.00014  Score=75.11  Aligned_cols=109  Identities=12%  Similarity=0.031  Sum_probs=87.1

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ...+..+...|++++|++.+++++++..+.  +.++. ...++..++.+|...|++++|++++++++..     .   |.
T Consensus       479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---p~  548 (597)
T 2xpi_A          479 NELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-----S---TN  548 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S---SC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----C---CC
Confidence            345556778899999999999998765431  23444 4788999999999999999999999999875     2   33


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  435 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~  435 (456)
                      ....++.||.++...|++++|.+++++++++     .|+++....
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~  588 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAI-----SPNEIMASD  588 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHHHH
Confidence            4578899999999999999999999999986     566655443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.93  E-value=7.4e-05  Score=63.65  Aligned_cols=96  Identities=14%  Similarity=0.029  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC----CC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ----FH-PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~----~h-p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      .+..+.+++..+...|+|++|+..|+++|.+-.. +|.    +| |..+..++++|.++..+|++++|+..+.+|++++.
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            3556678899999999999999999999987543 221    22 34567999999999999999999999999999866


Q ss_pred             HhcCCCCchHHHHH----HHHHHHHHH
Q 012772          424 ITHGTNSPFMKELI----LKLEEAQAE  446 (456)
Q Consensus       424 ~~~G~~h~~~~~~~----~~l~~~~~e  446 (456)
                      +. |+-.|......    .+++.+...
T Consensus        89 ~~-~e~~pd~~~A~~~~~~~rG~aL~~  114 (159)
T 2hr2_A           89 RR-GELNQDEGKLWISAVYSRALALDG  114 (159)
T ss_dssp             HH-CCTTSTHHHHHHHHHHHHHHHHHH
T ss_pred             cc-ccCCCchHHHHHHHHHhHHHHHHH
Confidence            65 45566666666    666665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.92  E-value=1.1e-05  Score=63.40  Aligned_cols=96  Identities=14%  Similarity=0.154  Sum_probs=73.8

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-  387 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~-  387 (456)
                      ......+..+...|++++|++.+++++++     .|.+   ..++.+++.++..+|+|++|++++++++.+    .|.+ 
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~   72 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRY----TSTAE   72 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CSSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcc
Confidence            34455667778899999999999999864     3444   566789999999999999999999999863    3322 


Q ss_pred             -ChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772          388 -HPLLGLQYYTCGKLEWFLGDTENAIKSMT  416 (456)
Q Consensus       388 -hp~~~~~l~~La~~~~~~g~~~eA~~~l~  416 (456)
                       ....+..++.+|.++..+|++++|+..++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence             12247788999999999888877665443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.92  E-value=3.3e-05  Score=65.63  Aligned_cols=76  Identities=9%  Similarity=-0.060  Sum_probs=64.7

Q ss_pred             CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      -+|.-..++..++.++..+|+|++|+.++++++.+        .|.-...+++||.++..+|++++|+..|++|+++   
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---   99 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---   99 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence            45667788899999999999999999999999864        3444567999999999999999999999999986   


Q ss_pred             hcCCCCchH
Q 012772          425 THGTNSPFM  433 (456)
Q Consensus       425 ~~G~~h~~~  433 (456)
                        .|++|..
T Consensus       100 --~P~~~~~  106 (151)
T 3gyz_A          100 --GKNDYTP  106 (151)
T ss_dssp             --SSSCCHH
T ss_pred             --CCCCcHH
Confidence              4566644

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.92  E-value=0.0002  Score=71.02  Aligned_cols=97  Identities=13%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      .......+..+...|++++|+..+++++..     .|.+   ..++..++.+|..+|++++|+.++++++..        
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------   89 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQL--------   89 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            445566677788899999999999998754     3444   677888999999999999999999999875        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      +|.....++.+|.++..+|++++|+..++++++
T Consensus        90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  122 (450)
T 2y4t_A           90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK  122 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            244467899999999999999999999999986

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.91  E-value=4.4e-05  Score=64.94  Aligned_cols=74  Identities=14%  Similarity=0.079  Sum_probs=64.7

Q ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 012772          348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----------HPLLGLQYYTCGKLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       348 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~----------hp~~~~~l~~La~~~~~~g~~~eA~~~l~~  417 (456)
                      ..+..+..+|..+...|+|++|+.++.+++.+.....+..          .|..+..++++|.++..+|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3567778899999999999999999999999877654322          567778999999999999999999999999


Q ss_pred             HHHH
Q 012772          418 AVEI  421 (456)
Q Consensus       418 Al~i  421 (456)
                      |+++
T Consensus        89 al~~   92 (162)
T 3rkv_A           89 VLKR   92 (162)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9987

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.91  E-value=6.1e-05  Score=60.93  Aligned_cols=65  Identities=18%  Similarity=0.063  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ....+..+|..+...|+|++|+.++++++..        .|.....++++|.++..+|++++|+..+++|+++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3566788999999999999999999999875        2444678999999999999999999999999987

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.90  E-value=9.7e-05  Score=74.53  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      .+..+...+..+...|++++|+..|++++...     |+    ..++..++.++..+|++++|+.++++++..       
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------   68 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-------   68 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-------
Confidence            45566778888889999999999999998652     42    567889999999999999999999999864       


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                       +|.....++.+|.++..+|++++|+..|++++.+
T Consensus        69 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  102 (514)
T 2gw1_A           69 -KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN  102 (514)
T ss_dssp             -CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             -ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence             3445578899999999999999999999998765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.89  E-value=6.8e-05  Score=60.54  Aligned_cols=84  Identities=12%  Similarity=-0.044  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  431 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~  431 (456)
                      .+..++..+...|+|++|+.++++++..     .+.++.....++.+|.++..+|++++|++.++++++.     .|+++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            3567888999999999999999998763     3577888889999999999999999999999999874     57776


Q ss_pred             hHHHHHHHHHHHHH
Q 012772          432 FMKELILKLEEAQA  445 (456)
Q Consensus       432 ~~~~~~~~l~~~~~  445 (456)
                      .....+..++.+..
T Consensus        74 ~~~~~~~~la~~~~   87 (129)
T 2xev_A           74 KAAGGLLKLGLSQY   87 (129)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            66666677666644

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.89  E-value=0.00011  Score=72.40  Aligned_cols=88  Identities=13%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-WKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~-~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      +...|++++|++.+++++.+     .|.+   ..++.+++.++..+|+ +++|+.++++++.+        +|.-...++
T Consensus       107 ~~~~g~~~~Al~~~~~al~l-----~P~~---~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~  170 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDAIEL-----NAAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWH  170 (382)
T ss_dssp             HHHTCCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHH
T ss_pred             HHHCCChHHHHHHHHHHHHh-----CccC---HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHH
Confidence            34456777777777666543     2333   4455666667777775 77777777766643        333344566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          397 TCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       397 ~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++|.++..+|++++|+..|++|+++
T Consensus       171 ~~g~~~~~~g~~~eAl~~~~kal~l  195 (382)
T 2h6f_A          171 HRRVLVEWLRDPSQELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh
Confidence            6666666666666666666666653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.88  E-value=2.7e-05  Score=67.37  Aligned_cols=103  Identities=13%  Similarity=0.070  Sum_probs=77.0

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH----------
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY----------  380 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~----------  380 (456)
                      .+..+..+...|++++|+..+++++...     |++   ..++..++.++..+|++++|+.++++++...          
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~   80 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-----QSR---GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA   80 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-----HTS---HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc---HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence            3455666778899999999988886542     344   5677889999999999999998887664321          


Q ss_pred             ----HHhcCC------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          381 ----QRVYPQ------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       381 ----e~~~g~------------~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                          ....+.            .+|.-...++.+|.++..+|++++|+..|++++++
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  137 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV  137 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence                000111            14555678899999999999999999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.86  E-value=0.00026  Score=59.51  Aligned_cols=100  Identities=12%  Similarity=-0.003  Sum_probs=78.6

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+...|++++|++.+++++..     .|.+   ..++..++.++..+|++++|+.++++++..     .+.++.
T Consensus        50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~  116 (166)
T 1a17_A           50 YGNRSLAYLRTECYGYALGDATRAIEL-----DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD  116 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH
Confidence            344566677889999999999998764     3443   567789999999999999999999999864     234443


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                       +.....++..+..+|++++|++.+.++..++..
T Consensus       117 -~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          117 -AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence             344566677788899999999999999988854

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.85  E-value=5.8e-06  Score=84.23  Aligned_cols=108  Identities=13%  Similarity=-0.013  Sum_probs=81.8

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....|..+..+|++++|++.+++++++     .|.   ...++.++|.+|..+|++++|++++++++.+    . +.++
T Consensus        42 ~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~-p~~~  108 (477)
T 1wao_1           42 YYGNRSLAYLRTECYGYALGDATRAIEL-----DKK---YIKGYYRRAASNMALGKFRAALRDYETVVKV----K-PHDK  108 (477)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----S-TTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C-CCCH
Confidence            4455677788899999999999999764     344   4677889999999999999999999999875    2 2333


Q ss_pred             HHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHHHHHhcCCCCchH
Q 012772          390 LLGLQYYTCGKL--EWFLGDTENAIKSMT-----------EAVEILRITHGTNSPFM  433 (456)
Q Consensus       390 ~~~~~l~~La~~--~~~~g~~~eA~~~l~-----------~Al~i~~~~~G~~h~~~  433 (456)
                         ..+..++.+  +..+|++++|++.++           +|+++-....|+.++..
T Consensus       109 ---~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  162 (477)
T 1wao_1          109 ---DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG  162 (477)
T ss_dssp             ---THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccc
Confidence               355666666  888899999999999           88888888888888763

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.83  E-value=9.2e-05  Score=63.04  Aligned_cols=68  Identities=10%  Similarity=0.051  Sum_probs=60.1

Q ss_pred             CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +......+..++.++...|+|++|++++++++.+        .|.....++++|.++..+|++++|+..+++|+++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4556788899999999999999999999999875        2444678999999999999999999999999987

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.83  E-value=0.00015  Score=57.99  Aligned_cols=88  Identities=11%  Similarity=0.050  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  428 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~  428 (456)
                      ....+..++..+...|+|++|+.++++++..        .|.....++.+|.++..+|++++|+.++++++++... .++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NRE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cch
Confidence            3567788999999999999999999999875        2333567899999999999999999999999998764 345


Q ss_pred             CCchHHHHHHHHHHHHH
Q 012772          429 NSPFMKELILKLEEAQA  445 (456)
Q Consensus       429 ~h~~~~~~~~~l~~~~~  445 (456)
                      +++....+...++.+..
T Consensus        74 ~~~~~~~~~~~la~~~~   90 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYF   90 (131)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            55555666666666543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.82  E-value=0.00032  Score=72.44  Aligned_cols=106  Identities=13%  Similarity=0.087  Sum_probs=81.4

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH-HH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LG  392 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~-~~  392 (456)
                      .+..+...|++++|++.++++++.     .|.++   .++..++.+|...|++++|++++++++......  +.+|. .+
T Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~  516 (597)
T 2xpi_A          447 LGMQHMQLGNILLANEYLQSSYAL-----FQYDP---LLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWA  516 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHH
Confidence            334455667777777777776543     34443   567889999999999999999999999876543  34555 48


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  434 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~  434 (456)
                      ..++.+|.++...|++++|++.+++++++     +|+++.+.
T Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~  553 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYDAAIDALNQGLLL-----STNDANVH  553 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSCCHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHH
Confidence            89999999999999999999999999986     46665443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.79  E-value=6.6e-05  Score=64.66  Aligned_cols=88  Identities=9%  Similarity=0.092  Sum_probs=68.3

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      +..+|++++|+..+++++..     .|.+   ..++..++.+|...|++++|+.++++++.+.     +.+   ...++.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA-----NPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH-----CCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHH
Confidence            45678889999988888753     3444   4677899999999999999999999998753     233   457889


Q ss_pred             HHHH-HHHcCCH--HHHHHHHHHHHHH
Q 012772          398 CGKL-EWFLGDT--ENAIKSMTEAVEI  421 (456)
Q Consensus       398 La~~-~~~~g~~--~eA~~~l~~Al~i  421 (456)
                      +|.+ +...|++  ++|+..+++++++
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~  110 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL  110 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            9999 8899999  9999999999986

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.77  E-value=0.00023  Score=67.19  Aligned_cols=101  Identities=14%  Similarity=0.011  Sum_probs=74.9

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+...|++++|++.++++++.     .|++. ..........++...|++++|+..+++++..    .    |....
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----~----p~~~~  201 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQ-----DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK----C----SPTLL  201 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----S----CCCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhh-----CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----C----CCcHH
Confidence            344466789999999999998764     35543 2222233334455669999999999999864    3    33466


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  433 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~  433 (456)
                      .++++|.++..+|++++|+..|++|+++     .|++|.+
T Consensus       202 ~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~  236 (291)
T 3mkr_A          202 LLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPET  236 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence            8999999999999999999999999975     3566554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.73  E-value=0.00026  Score=73.36  Aligned_cols=96  Identities=11%  Similarity=-0.093  Sum_probs=80.3

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+..+|++++|++.+++++++     .|++   ..++.+++.+|..+|++++|++++++++..        +|.
T Consensus        60 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~  123 (568)
T 2vsy_A           60 VARLGRVRWTQQRHAEAAVLLQQASDA-----APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPE  123 (568)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            344566677889999999999999864     3444   567889999999999999999999999875        334


Q ss_pred             HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFL---GDTENAIKSMTEAVEIL  422 (456)
Q Consensus       391 ~~~~l~~La~~~~~~---g~~~eA~~~l~~Al~i~  422 (456)
                      ....++++|.++..+   |++++|.+.+++|++.-
T Consensus       124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            456789999999999   99999999999998764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.73  E-value=6.6e-05  Score=79.91  Aligned_cols=94  Identities=10%  Similarity=-0.022  Sum_probs=71.7

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....|..+...|++++|++.++++++.     .|++   ..++.+++.+|..+|++++|++.+++++.+.        |.
T Consensus       436 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~  499 (681)
T 2pzi_A          436 PLMEVRALLDLGDVAKATRKLDDLAER-----VGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTF--------PG  499 (681)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcc-----Ccch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Confidence            345566677889999999999998764     2444   5678899999999999999999999998642        22


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      -...+++||.++..+|++++ +..|++|+++
T Consensus       500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~  529 (681)
T 2pzi_A          500 ELAPKLALAATAELAGNTDE-HKFYQTVWST  529 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence            24556777777777777777 7777777764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.72  E-value=0.00012  Score=72.27  Aligned_cols=93  Identities=11%  Similarity=-0.011  Sum_probs=61.9

Q ss_pred             HHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          313 KKTLALTSCGN-HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       313 ~~a~~~~~~g~-~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ..+..+...|+ +++|+..+++++.+     .|.+   ..++.+++.++..+|++++|+..++++|.+        .|.-
T Consensus       136 ~~g~~l~~~g~d~~eAl~~~~~al~l-----~P~~---~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~  199 (382)
T 2h6f_A          136 FRRVLLKSLQKDLHEEMNYITAIIEE-----QPKN---YQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKN  199 (382)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccC
Confidence            34445556675 88888887777653     2333   456677777777777777777777777753        2333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...++++|.++..+|++++|+..+++|+++
T Consensus       200 ~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            456677777777777777777777777664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.69  E-value=0.00015  Score=58.38  Aligned_cols=71  Identities=14%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             CCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          343 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       343 ~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .+..+....++..++..+...|+|++|+.++++++..        .|.....++.+|.++..+|++++|++++++|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            4566778899999999999999999999999999863        3334678999999999999999999999999986

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.69  E-value=0.00049  Score=51.47  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=62.0

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+...|++++|+..+++++..     .|.+   ..++..++.++..+|++++|+.++++++.+        +|.
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~   75 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPN   75 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence            344555667789999999999999764     3444   467789999999999999999999999875        233


Q ss_pred             HHHHHHHHHHHHHHcC
Q 012772          391 LGLQYYTCGKLEWFLG  406 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g  406 (456)
                      ....+.++|.++..+|
T Consensus        76 ~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           76 NAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            4556788888887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.69  E-value=0.00044  Score=66.70  Aligned_cols=103  Identities=9%  Similarity=-0.037  Sum_probs=82.9

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      +......+..+...|++++|+..+++++++     .|++   ..++.+++.+|..+|++++|+.++++++.+        
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------  259 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQL--------  259 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------
Confidence            344556777788899999999999999875     3444   567889999999999999999999999875        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhc
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENA-IKSMTEAVEILRITH  426 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA-~~~l~~Al~i~~~~~  426 (456)
                      .|.....+.+||.++..+|++++| .+.|++.+..+...-
T Consensus       260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  299 (336)
T 1p5q_A          260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE  299 (336)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            333456789999999999999998 557788777665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.68  E-value=0.00019  Score=58.46  Aligned_cols=67  Identities=19%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +.....+..++..+...|+|++|+.++++++..        .|.....++.+|.++..+|++++|+..+++|+++
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            345677889999999999999999999999875        2344678999999999999999999999999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.68  E-value=0.00011  Score=78.24  Aligned_cols=95  Identities=13%  Similarity=0.011  Sum_probs=74.4

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  398 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L  398 (456)
                      ...|++++|++.+++++...-..-+..++....++..++.+|..+|++++|++.+++++..        +|.-...++++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence            5679999999999888621111122234445567789999999999999999999999874        34446789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Q 012772          399 GKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       399 a~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      |.++..+|++++|++.|++|+++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l  496 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT  496 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999986

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.67  E-value=0.0002  Score=60.16  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      ++....++..++.++...|+|++|+.++++++..        .|.-...++.+|.++..+|++++|++.|++|+++    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   84 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4556778889999999999999999999998864        3333566789999999999999999999999886    


Q ss_pred             cCCCCchH
Q 012772          426 HGTNSPFM  433 (456)
Q Consensus       426 ~G~~h~~~  433 (456)
                       .|+++..
T Consensus        85 -~p~~~~~   91 (148)
T 2vgx_A           85 -DIXEPRF   91 (148)
T ss_dssp             -STTCTHH
T ss_pred             -CCCCchH
Confidence             4666654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=0.00035  Score=57.40  Aligned_cols=71  Identities=15%  Similarity=0.062  Sum_probs=62.4

Q ss_pred             CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++.....+..++..+...|+|++|++++++++..     .++++.....++.+|.++..+|++++|+..+++++++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            3456778889999999999999999999998853     3566667899999999999999999999999999986

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.64  E-value=0.0011  Score=67.09  Aligned_cols=99  Identities=16%  Similarity=0.109  Sum_probs=78.7

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ....+..+...|++++|++.+++++..     .|.+.   .++..++.++..+|++++|+.++++++..        +|.
T Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~  376 (537)
T 3fp2_A          313 YYHRGQMYFILQDYKNAKEDFQKAQSL-----NPENV---YPYIQLACLLYKQGKFTESEAFFNETKLK--------FPT  376 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            344556677889999999999888763     34444   56778999999999999999999998865        233


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      ....++.+|.++..+|++++|+..+++|+++....
T Consensus       377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            34577888999999999999999999999987543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.64  E-value=0.00087  Score=67.43  Aligned_cols=114  Identities=14%  Similarity=0.095  Sum_probs=87.9

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~---~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ...+..+...|++++|+..+++++......  +.......++..++.++..   .|++++|+.++++++..        +
T Consensus       376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--------~  445 (514)
T 2gw1_A          376 NFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--------D  445 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--------C
Confidence            445666778899999999999998754321  2222234577899999999   99999999999999875        2


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                      |.....++.+|.++..+|++++|..++++|+++     .|+++.....+..+
T Consensus       446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~  492 (514)
T 2gw1_A          446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL-----ARTMEEKLQAITFA  492 (514)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----ccccHHHHHHHHHH
Confidence            344567899999999999999999999999986     56666665554433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.63  E-value=0.00043  Score=70.29  Aligned_cols=94  Identities=12%  Similarity=0.156  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      ....+...+..+..+|++++|++.|++++..     .|++   ..++..++.+|..+|++++|++.+++++.+       
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------   88 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-----DPNE---PVFYSNISACYISTGDLEKVIEFTTKALEI-------   88 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence            4566677888889999999999999999864     3444   577889999999999999999999999875       


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMT  416 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~  416 (456)
                       +|.-...++.+|.++..+|++++|+..|+
T Consensus        89 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~  117 (537)
T 3fp2_A           89 -KPDHSKALLRRASANESLGNFTDAMFDLS  117 (537)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             34455688999999999999999999883

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.61  E-value=0.00061  Score=62.89  Aligned_cols=89  Identities=15%  Similarity=0.100  Sum_probs=62.0

Q ss_pred             HHHHhhhh----cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhc
Q 012772          313 KKTLALTS----CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVY  384 (456)
Q Consensus       313 ~~a~~~~~----~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~  384 (456)
                      ..+..+..    .|++++|++.++++.+.     +     -..+...++.+|..    .+++++|++++++++..     
T Consensus        43 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----  107 (273)
T 1ouv_A           43 NLGVLYYQGQGVEKNLKKAASFYAKACDL-----N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----  107 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----
Confidence            34444555    77777777777776543     1     24566777778877    78888888888777653     


Q ss_pred             CCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 012772          385 PQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI  421 (456)
Q Consensus       385 g~~hp~~~~~l~~La~~~~~----~g~~~eA~~~l~~Al~i  421 (456)
                        .   ....+++||.++..    .|++++|+++|++|++.
T Consensus       108 --~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A          108 --K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             --T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             --C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence              1   24567788888887    88888888888888763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.60  E-value=0.00057  Score=56.59  Aligned_cols=75  Identities=17%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          346 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       346 h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      ++.-...+..++..+...|+|++|+.++++++..        +|.-...++.+|.++..+|++++|++.|++|+++    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4556777889999999999999999999998853        3334567889999999999999999999999986    


Q ss_pred             cCCCCchH
Q 012772          426 HGTNSPFM  433 (456)
Q Consensus       426 ~G~~h~~~  433 (456)
                       .|++|..
T Consensus        82 -~p~~~~~   88 (142)
T 2xcb_A           82 -DINEPRF   88 (142)
T ss_dssp             -CTTCTHH
T ss_pred             -CCCCcHH
Confidence             4666654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.58  E-value=0.0016  Score=51.03  Aligned_cols=78  Identities=9%  Similarity=-0.064  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  430 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h  430 (456)
                      .-...||..+..+|+|..|+.++++++.....-.. .-+.....+..||.++..+|++++|..++++|+.     +.|+|
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~   79 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEH   79 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTC
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCC
Confidence            33457899999999999999999999987652211 1245678889999999999999999999999987     47788


Q ss_pred             chHH
Q 012772          431 PFMK  434 (456)
Q Consensus       431 ~~~~  434 (456)
                      +...
T Consensus        80 ~~~~   83 (104)
T 2v5f_A           80 QRAN   83 (104)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.55  E-value=0.00054  Score=55.30  Aligned_cols=69  Identities=12%  Similarity=-0.008  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  431 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~  431 (456)
                      ....++..+...|++++|+..+++++..        .|.-...++.||.++..+|++++|+..|++|+++     .|+++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~   85 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI   85 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH
Confidence            3567888999999999999999999863        4444678899999999999999999999999986     45665


Q ss_pred             hH
Q 012772          432 FM  433 (456)
Q Consensus       432 ~~  433 (456)
                      ..
T Consensus        86 ~~   87 (121)
T 1hxi_A           86 AV   87 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.52  E-value=0.00055  Score=54.48  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=57.9

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +.....+..++..+...|++++|+.++++++..        +|.....++.+|.++..+|++++|+..+++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            445677788999999999999999999999864        2334678999999999999999999999999985

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.50  E-value=0.00062  Score=53.69  Aligned_cols=64  Identities=23%  Similarity=0.351  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ..++..++.++...|++++|++++++++..    .    |.....++.+|.++...|++++|+.++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----D----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            567788999999999999999999999864    2    233567899999999999999999999999875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.49  E-value=5.7e-05  Score=58.81  Aligned_cols=63  Identities=13%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .++..++.++...|++++|+.++++++..    .    |.....++.+|.++..+|++++|++.+++|+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL----D----PEESKYWLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHH----C----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHh----C----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34567889999999999999999999864    2    223557899999999999999999999999976

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.48  E-value=0.00041  Score=53.22  Aligned_cols=67  Identities=28%  Similarity=0.367  Sum_probs=55.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772          354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  432 (456)
Q Consensus       354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~-~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~  432 (456)
                      ...+..+...|+|++|++++++++..        +|.-.. .++.+|.++..+|++++|++.|++|+++     .|+++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   70 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA   70 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH
Confidence            35778899999999999999999874        233345 8899999999999999999999999976     456654


Q ss_pred             H
Q 012772          433 M  433 (456)
Q Consensus       433 ~  433 (456)
                      .
T Consensus        71 ~   71 (99)
T 2kc7_A           71 L   71 (99)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.47  E-value=0.00087  Score=52.27  Aligned_cols=65  Identities=12%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ....+..++..+...|+|++|+.++++++..    . +.   -...++.+|.++..+|++++|...+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL----D-PH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C-TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----C-CC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            3566788999999999999999999999864    2 22   3567899999999999999999999999986

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*

Probab=97.45  E-value=0.00015  Score=72.92  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             CCCHHHHHHHHhhHhccccccccCCCCcceeeeccccccccCCCcCCC---eeEEe--------CCEEEEEEecCCCCCC
Q 012772          183 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNA---VLVFE--------GRLAVVRAVQHVPKGA  251 (456)
Q Consensus       183 ~~~~~~l~~~~~~~~~N~~~i~~~~~~~~g~glyp~~sl~NHSC~PN~---~~~f~--------~~~~~vra~~~I~~Ge  251 (456)
                      .++.+...-.++.+.+.+|.+.+.    -+.+|.|.+-|+||||.||.   ...++        ++.++++|.++|++||
T Consensus       158 ~~t~~~f~wA~~~v~SRaf~~~~~----~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Ge  233 (440)
T 2h21_A          158 PVTLDDFFWAFGILRSRAFSRLRN----ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE  233 (440)
T ss_dssp             CCCHHHHHHHHHHHHHHCBCCC-------CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTS
T ss_pred             CCCHHHHHHHHHHhcccceeccCC----CceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCC
Confidence            356777777888888888865432    35799999999999999974   22322        3579999999999999


Q ss_pred             ccc--CChh-hHHHh--hCCcccc
Q 012772          252 EGQ--FDDI-QESAI--LEGYRCK  270 (456)
Q Consensus       252 e~~--~~~~-r~~~l--~~~f~C~  270 (456)
                      ||+  |.+. --..|  ..||...
T Consensus       234 ei~~sYG~~~~N~~LL~~YGFv~~  257 (440)
T 2h21_A          234 QVYIQYDLNKSNAELALDYGFIEP  257 (440)
T ss_dssp             BCEECSCTTCCHHHHHHHSSCCCS
T ss_pred             EEEEeCCCCCCHHHHHHhCCCCcC
Confidence            975  6654 33333  3588665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.41  E-value=0.00067  Score=58.39  Aligned_cols=68  Identities=13%  Similarity=-0.047  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      -..++..++.++..+|++++|+.++++++..    .|. + .-...++.||.++..+|+.++|+..|++++..+
T Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~-~-~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~~  174 (176)
T 2r5s_A          107 NFELACELAVQYNQVGRDEEALELLWNILKV----NLG-A-QDGEVKKTFMDILSALGQGNAIASKYRRQLYSI  174 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTT-T-TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----Ccc-c-ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            3567788999999999999999999998753    221 1 113467899999999999999999999998754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.36  E-value=0.00022  Score=57.00  Aligned_cols=62  Identities=19%  Similarity=0.095  Sum_probs=48.7

Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchH
Q 012772          362 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  433 (456)
Q Consensus       362 ~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~  433 (456)
                      .+|++++|+.++++++.+     +..+|.....+++||.++..+|++++|+..+++|+++     .|+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchHH
Confidence            468999999999999863     3457899999999999999999999999999999986     4555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.35  E-value=0.0014  Score=61.38  Aligned_cols=87  Identities=14%  Similarity=0.064  Sum_probs=45.1

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH-HHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQY  395 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~-~~~l  395 (456)
                      .+...|+|++|.++++.+..     .+|   .-. ....++.++.+.|+|++|+.++++++.       ..+|.. ....
T Consensus       111 ~L~~~g~y~eA~~~l~~~~~-----~~p---~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~-------~~d~~~~~~a~  174 (282)
T 4f3v_A          111 CEAAQGNYADAMEALEAAPV-----AGS---EHL-VAWMKAVVYGAAERWTDVIDQVKSAGK-------WPDKFLAGAAG  174 (282)
T ss_dssp             HHHHHTCHHHHHHHHTSSCC-----TTC---HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG-------CSCHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHh-----cCC---chH-HHHHHHHHHHHcCCHHHHHHHHHHhhc-------cCCcccHHHHH
Confidence            34455677777665543321     122   222 445555566666666666666543321       114433 2355


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 012772          396 YTCGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       396 ~~La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      +.||.++..+|++++|+..|++|.
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHh
Confidence            666666666666666666666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.34  E-value=0.0025  Score=59.59  Aligned_cols=93  Identities=9%  Similarity=-0.080  Sum_probs=73.4

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH-HHH
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGL  393 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~-~~~  393 (456)
                      ..+...++|++|+..++.+.      -.| ++. ...+...|+.++..+|++++|+.++++++.      |+.-|. ...
T Consensus       143 ~l~~~~~r~~dA~~~l~~a~------~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~d  209 (282)
T 4f3v_A          143 VVYGAAERWTDVIDQVKSAG------KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARA  209 (282)
T ss_dssp             HHHHHTTCHHHHHHHHTTGG------GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHH
T ss_pred             HHHHHcCCHHHHHHHHHHhh------ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHH
Confidence            34567899999998876331      112 333 356889999999999999999999998762      332266 666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .++.+|.++..+|+.++|...|++++++
T Consensus       210 a~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          210 IAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            8899999999999999999999999884

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.34  E-value=0.00087  Score=58.77  Aligned_cols=71  Identities=8%  Similarity=-0.078  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL----------LGLQYYTCGKLEWFLGDTENAIKSMTEA  418 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~----------~~~~l~~La~~~~~~g~~~eA~~~l~~A  418 (456)
                      .+..+..++..+...|+|++|+.++++++.+... . +++..          ....++++|.++..+|++++|+..+++|
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-T-EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-C-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-c-cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4566788999999999999999999999875322 1 11111          2478999999999999999999999999


Q ss_pred             HHH
Q 012772          419 VEI  421 (456)
Q Consensus       419 l~i  421 (456)
                      +++
T Consensus       115 l~~  117 (198)
T 2fbn_A          115 LKI  117 (198)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            987

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.32  E-value=0.0019  Score=59.46  Aligned_cols=89  Identities=19%  Similarity=0.134  Sum_probs=71.4

Q ss_pred             HHHHhhhh----cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhc
Q 012772          313 KKTLALTS----CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVY  384 (456)
Q Consensus       313 ~~a~~~~~----~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~  384 (456)
                      ..+..+..    .+++++|++.++++.+.       .   -..+...++.+|..    .|++++|+.++++++..     
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----  143 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----  143 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----
Confidence            34445667    89999999998888653       1   25678889999999    99999999999998863     


Q ss_pred             CCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 012772          385 PQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI  421 (456)
Q Consensus       385 g~~hp~~~~~l~~La~~~~~----~g~~~eA~~~l~~Al~i  421 (456)
                        .+   ...+++||.++..    .+++++|+++|++|++.
T Consensus       144 --~~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          144 --ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             --TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             --Cc---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence              12   4568889999998    89999999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.31  E-value=0.00054  Score=67.10  Aligned_cols=72  Identities=15%  Similarity=0.217  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRV--------YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~--------~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +..+..++..+...|+|++|+.++++++.+....        ....+|..+..++++|.++..+|++++|+.++++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            4556788999999999999999999999876542        11257888999999999999999999999999999985

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.30  E-value=0.00041  Score=64.99  Aligned_cols=64  Identities=20%  Similarity=0.188  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ...+..+|..+...|+|++|+.++++++..        +|..+..++++|.++..+|++++|+..+++|+++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            466788999999999999999999999875        4455678999999999999999999999999975

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.24  E-value=0.0011  Score=50.74  Aligned_cols=85  Identities=15%  Similarity=0.158  Sum_probs=60.5

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHH-HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ-TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~-~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ..+..+...|++++|+..++++++.     .|.+   .. ++..++.+|..+|++++|++++++++.+     .++++..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~   71 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT-----EPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPAL   71 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHH
Confidence            4555667789999999999998764     3444   34 7789999999999999999999999864     3444432


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      -   .        .+.+.++...|+++..+
T Consensus        72 ~---~--------~~~~~~a~~~~~~~~~~   90 (99)
T 2kc7_A           72 Q---A--------RKMVMDILNFYNKDMYN   90 (99)
T ss_dssp             H---H--------HHHHHHHHHHHCCTTHH
T ss_pred             H---H--------HHHHHHHHHHHHHHhcc
Confidence            1   1        14455666666655443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.18  E-value=0.0018  Score=60.69  Aligned_cols=68  Identities=15%  Similarity=0.034  Sum_probs=58.1

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL--GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~--~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      |.-..++.+++.+|..+|++++|+..+++++..        +|..  +..+.+|+.++..+|+.++|...|++++..+
T Consensus       216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~~  285 (287)
T 3qou_A          216 PEDAALATQLALQLHQVGRNEEALELLFGHLRX--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYAL  285 (287)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence            334567889999999999999999999999864        3333  6778999999999999999999999999865

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.09  E-value=0.0015  Score=65.92  Aligned_cols=75  Identities=8%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      +.....+.+++..+..+|+|++|+.++++++.+......       ...+..+..++++|.++..+|++++|+..+++|+
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            345778889999999999999999999999986432100       0134567899999999999999999999999999


Q ss_pred             HH
Q 012772          420 EI  421 (456)
Q Consensus       420 ~i  421 (456)
                      ++
T Consensus       345 ~~  346 (457)
T 1kt0_A          345 GL  346 (457)
T ss_dssp             HH
T ss_pred             hc
Confidence            86

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.01  E-value=0.0037  Score=48.27  Aligned_cols=62  Identities=16%  Similarity=0.105  Sum_probs=51.2

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  381 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e  381 (456)
                      ...+..+...|++++|+..+++++++     .|+++   .++..++.+|..+|++++|++++++++.+..
T Consensus        11 ~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A           11 YALAQEHLKHDNASRALALFEELVET-----DPDYV---GTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            44556677889999999999999864     34443   4778999999999999999999999998754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.86  E-value=0.0035  Score=59.15  Aligned_cols=83  Identities=11%  Similarity=0.036  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 012772          325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  404 (456)
Q Consensus       325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~  404 (456)
                      ++|+..++++++    .+.|.+   ..++..++.++..+|++++|...+++++.+     ++.++..  .+.++|.++..
T Consensus        81 ~~A~~~~~rAl~----~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~~~~~~~~~  146 (308)
T 2ond_A           81 DEAANIYERAIS----TLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL--VYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHT----TTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCccH--HHHHHHHHHHH
Confidence            788888888764    134444   456778888888999999999999998863     4444432  67778888888


Q ss_pred             cCCHHHHHHHHHHHHHH
Q 012772          405 LGDTENAIKSMTEAVEI  421 (456)
Q Consensus       405 ~g~~~eA~~~l~~Al~i  421 (456)
                      +|++++|++.|++|+++
T Consensus       147 ~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          147 AEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHCHHHHHHHHHHHHTS
T ss_pred             hcCHHHHHHHHHHHHhc
Confidence            88888888888888763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.86  E-value=0.0035  Score=55.75  Aligned_cols=65  Identities=12%  Similarity=-0.029  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI  421 (456)
Q Consensus       351 ~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~----~g~~~eA~~~l~~Al~i  421 (456)
                      .+..+|+.+|..    .+++++|++++++++..      ..+...+..+++||.+|..    .+++++|+.+|++|.+.
T Consensus        86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            445556666655    55666666666655431      1122567777788888877    67778888888887654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.77  E-value=0.034  Score=43.23  Aligned_cols=79  Identities=6%  Similarity=-0.118  Sum_probs=59.5

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      .+.+..+..+|+|.+|+..++.++......- ........++..|+.++.++|++++|+.++++++.     +-|+|+..
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~~~~   82 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHHH
Confidence            4556667788999999999999987643211 01345678889999999999999999999999985     35677665


Q ss_pred             HHHHHHHH
Q 012772          392 GLQYYTCG  399 (456)
Q Consensus       392 ~~~l~~La  399 (456)
                         +.+++
T Consensus        83 ---~~n~~   87 (104)
T 2v5f_A           83 ---NGNLK   87 (104)
T ss_dssp             ---HHHHH
T ss_pred             ---HhhHH
Confidence               44444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.77  E-value=0.0099  Score=56.00  Aligned_cols=95  Identities=11%  Similarity=-0.050  Sum_probs=50.1

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-------------HH-hcC
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY-------------QR-VYP  385 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~-------------e~-~~g  385 (456)
                      ..|++++|++.|+++++     +.|.++..  ++.+++.++..+|++++|+..+++++..-             +. ..|
T Consensus       111 ~~~~~~~A~~~~~~al~-----~~p~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~  183 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLA-----IEDIDPTL--VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK  183 (308)
T ss_dssp             HTTCHHHHHHHHHHHHT-----SSSSCTHH--HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC
T ss_pred             hcCCHHHHHHHHHHHHh-----ccccCccH--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            35666666666666653     23444321  44555555556666666666655554320             00 000


Q ss_pred             C-------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          386 Q-------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       386 ~-------------~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .             .+|.....+.++|.++..+|++++|+..|++|++.
T Consensus       184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            0             01222345566666676777777777777777653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.75  E-value=0.034  Score=47.08  Aligned_cols=101  Identities=14%  Similarity=0.162  Sum_probs=72.8

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHh---hcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC-
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKK---LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-  388 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~---~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h-  388 (456)
                      +....+.+.|.|+.|+-+...++.+...   ++.|  ..-++++..+|+++...|+|.+|..+++++|...+.+. ... 
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp--~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~-k~~s  101 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP--PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS-KTSK  101 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            3344455678999998888877766432   1111  12467788899999999999999999999999887432 211 


Q ss_pred             -----------------hHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 012772          389 -----------------PLLGLQYYTCGKLEWFLGDTENAIKSMT  416 (456)
Q Consensus       389 -----------------p~~~~~l~~La~~~~~~g~~~eA~~~l~  416 (456)
                                       +.=...-|++|..+.++|++++|+..|+
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                             1112467899999999999999887765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.74  E-value=0.013  Score=52.01  Aligned_cols=84  Identities=12%  Similarity=0.005  Sum_probs=54.2

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCc--cHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSV--NLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  394 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~--~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~  394 (456)
                      .+++++|++.++++.+        ..+  ....+..+|+.+|..    .+++++|+.++++++..      +.++.   .
T Consensus       102 ~~d~~~A~~~~~~A~~--------~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~---a  164 (212)
T 3rjv_A          102 ATDVAHAITLLQDAAR--------DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRTGY---A  164 (212)
T ss_dssp             SCCHHHHHHHHHHHTS--------STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCTTH---H
T ss_pred             ccCHHHHHHHHHHHHH--------cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCCHH---H
Confidence            4555555555554432        112  347777777777777    67788888887777531      45554   5


Q ss_pred             HHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 012772          395 YYTCGKLEWFL-G-----DTENAIKSMTEAVEI  421 (456)
Q Consensus       395 l~~La~~~~~~-g-----~~~eA~~~l~~Al~i  421 (456)
                      +++||.+|... |     ++++|+.+|++|.+.
T Consensus       165 ~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          165 EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            77777777654 3     677777777777765

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}

Probab=96.66  E-value=0.00098  Score=56.27  Aligned_cols=39  Identities=15%  Similarity=0.058  Sum_probs=33.5

Q ss_pred             ccccccCCCcC---CCeeEEeCCEEEEEEecCCCCCCcccCC
Q 012772          218 VISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEGQFD  256 (456)
Q Consensus       218 ~~sl~NHSC~P---N~~~~f~~~~~~vra~~~I~~Gee~~~~  256 (456)
                      -+.++||+|.|   |+...-.++++.++|+|+|++|+|+.+.
T Consensus        97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~  138 (151)
T 3db5_A           97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFY  138 (151)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEE
T ss_pred             ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEe
Confidence            34678999976   9988777999999999999999998743

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.61  E-value=0.046  Score=45.78  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=67.4

Q ss_pred             cHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          348 NLMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       348 ~~~~~~~~L~~~~~~~g---~~~~A~~~~~~~l~~~e~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      ...++..+++.++.+.+   ++++++.+++.++..       ++| .....+|+||..+.++|+|++|++++++++++  
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence            46788889999999876   777898888877653       256 56778999999999999999999999999986  


Q ss_pred             HhcCCCCchHHHHHHHHHHH
Q 012772          424 ITHGTNSPFMKELILKLEEA  443 (456)
Q Consensus       424 ~~~G~~h~~~~~~~~~l~~~  443 (456)
                         -|+|+....+...+.+.
T Consensus       101 ---eP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A          101 ---EPQNNQAKELERLIDKA  117 (152)
T ss_dssp             ---CTTCHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHH
Confidence               46777777666665544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.59  E-value=0.019  Score=47.21  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=69.0

Q ss_pred             HHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          315 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       315 a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      +..+...+.+++|++.++++.+.       .   -..+..+|+.+|..    .+++++|+++++++.+.       .+  
T Consensus        32 g~~y~~g~~~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~--   92 (138)
T 1klx_A           32 SLVSNSQINKQKLFQYLSKACEL-------N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND--   92 (138)
T ss_dssp             HHHTCTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC--
T ss_pred             HHHHHcCCCHHHHHHHHHHHHcC-------C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------CC--
Confidence            33444556778888888887643       1   25778899999998    89999999999998753       23  


Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI  421 (456)
Q Consensus       391 ~~~~l~~La~~~~~----~g~~~eA~~~l~~Al~i  421 (456)
                       ...+++||.+|..    .+++++|+++|++|.+.
T Consensus        93 -~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           93 -QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence             4578999999999    89999999999999874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.58  E-value=0.016  Score=44.29  Aligned_cols=83  Identities=10%  Similarity=0.014  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772          350 MQTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  426 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~  426 (456)
                      ...+..++.++...++   .++|..+++++|.        ..|.-...++.||.++...|+|++|+.+++++++.     
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-----   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--------LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS-----   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--------HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence            4455667777665443   6899999999996        35555667888899999999999999999998763     


Q ss_pred             CCCCchHHHHHHHHHHHHH
Q 012772          427 GTNSPFMKELILKLEEAQA  445 (456)
Q Consensus       427 G~~h~~~~~~~~~l~~~~~  445 (456)
                      .|+.|....+...++.++.
T Consensus        73 ~p~~~~~~~i~~~I~~A~~   91 (93)
T 3bee_A           73 NDPNLDRVTIIESINKAKK   91 (93)
T ss_dssp             CCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHh
Confidence            4457777778888887764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.49  E-value=0.0042  Score=59.79  Aligned_cols=96  Identities=8%  Similarity=-0.139  Sum_probs=51.1

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  389 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp  389 (456)
                      .....+..+...|++++|+..+++++++     .|++   ..++.+++.+|..+|+|++|+.++++++.+.        |
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p  295 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTE-----EEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKYA--------P  295 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------C
Confidence            3455677788899999999999999864     3444   5778999999999999999999999998642        3


Q ss_pred             HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHH
Q 012772          390 LLGLQYYTCGKLE-WFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       390 ~~~~~l~~La~~~-~~~g~~~eA~~~l~~Al~i  421 (456)
                      .-...+..|+.+. ...+..+++...|.+++..
T Consensus       296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             ---------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            3344566677763 3456677778888877654

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}

Probab=96.47  E-value=0.0015  Score=56.03  Aligned_cols=38  Identities=18%  Similarity=0.149  Sum_probs=33.0

Q ss_pred             cccccCCCc---CCCeeEEeCCEEEEEEecCCCCCCcccCC
Q 012772          219 ISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEGQFD  256 (456)
Q Consensus       219 ~sl~NHSC~---PN~~~~f~~~~~~vra~~~I~~Gee~~~~  256 (456)
                      +.++||+|.   +|+...-.++++.++|+|+|++|+|+.+.
T Consensus       102 mR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvw  142 (170)
T 3ep0_A          102 MTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVW  142 (170)
T ss_dssp             GGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEE
T ss_pred             eeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEe
Confidence            357899997   89887777899999999999999998754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.45  E-value=0.021  Score=44.76  Aligned_cols=63  Identities=11%  Similarity=-0.029  Sum_probs=51.7

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  381 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e  381 (456)
                      ....+..+...|++++|+..+++++.+     .|.+   ..++..++.+|..+|++++|+.++++++.+..
T Consensus        22 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           22 RFTLGKTYAEHEQFDAALPHLRAALDF-----DPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            344566677889999999999999864     3444   56778999999999999999999999998754

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}

Probab=96.04  E-value=0.0034  Score=55.02  Aligned_cols=39  Identities=13%  Similarity=0.065  Sum_probs=33.7

Q ss_pred             cccccCCCc---CCCeeEEeCCEEEEEEecCCCCCCcccCCh
Q 012772          219 ISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       219 ~sl~NHSC~---PN~~~~f~~~~~~vra~~~I~~Gee~~~~~  257 (456)
                      +.++||+|.   +|+...-.++++.++|+|+|++|+|+.+.+
T Consensus       132 mRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwY  173 (196)
T 3dal_A          132 MRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWY  173 (196)
T ss_dssp             GGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEE
T ss_pred             EEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEec
Confidence            467899997   798887779999999999999999988543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.82  E-value=0.096  Score=51.30  Aligned_cols=122  Identities=7%  Similarity=0.029  Sum_probs=84.3

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHh-hcCCC--C-----------ccHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKK-LYHPF--S-----------VNLMQTREKLIKILMELEDWKEALAYCQL  375 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~-~l~p~--h-----------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~  375 (456)
                      .+...+......|+.++|.+.+++++.+++. .|...  .           .....+...++..+...|++.+|+..+.+
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3333444444567888888888888877643 22211  1           12234455667778889999999999888


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHH
Q 012772          376 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELILK  439 (456)
Q Consensus       376 ~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h-~~~~~~~~~  439 (456)
                      ++.        .||..=..+..|-.++...|+..+|+..|++..+.+...+|-+- |.+..+...
T Consensus       197 ~~~--------~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~  253 (388)
T 2ff4_A          197 LTF--------EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  253 (388)
T ss_dssp             HHH--------HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            764        24444456667777888999999999999999999999999664 555555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.80  E-value=0.25  Score=48.24  Aligned_cols=107  Identities=17%  Similarity=0.031  Sum_probs=84.3

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+.-+.+.|+|.+|.+++.++..-..+.  .+...+++++-.-+.+|..++++.++..++.++..+...++  .||.+-
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~  179 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQ  179 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHH
Confidence            44556778999999999998887765442  23467888888889999999999999999999998877765  677555


Q ss_pred             HHH-HHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Q 012772          393 LQY-YTCGKLEW-FLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       393 ~~l-~~La~~~~-~~g~~~eA~~~l~~Al~i~~  423 (456)
                      ..+ ..-|.+++ ..++|.+|..+|-+|.+-+.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            544 44467777 79999999999999875544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.80  E-value=0.065  Score=60.22  Aligned_cols=109  Identities=14%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-----------------
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY-----------------  380 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~-----------------  380 (456)
                      +...|++++|++.|.++             .-...+..++..+.+.|+|++|+++++.+....                 
T Consensus      1115 ql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A         1115 QLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred             HHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence            34556666666655443             113445668888889999999999997655221                 


Q ss_pred             -----HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Q 012772          381 -----QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL  451 (456)
Q Consensus       381 -----e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~~~  451 (456)
                           +....  .+.. ..+.++|..+...|++++|..+|.+|-         +......++..+.+.++.++..+
T Consensus      1182 rleele~fI~--~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A         1182 RLAELEEFIN--GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred             CHHHHHHHHh--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHHHHHH
Confidence                 11111  1222 245568888889999999999999872         33344555555555555555443

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}

Probab=95.72  E-value=0.0051  Score=51.79  Aligned_cols=39  Identities=13%  Similarity=0.015  Sum_probs=34.0

Q ss_pred             cccccCCCc---CCCeeEEeCCEEEEEEecCCCCCCcccCCh
Q 012772          219 ISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       219 ~sl~NHSC~---PN~~~~f~~~~~~vra~~~I~~Gee~~~~~  257 (456)
                      +.++||+|.   +|+...-.++++.++|+|+|++|+|+.+.+
T Consensus        97 mr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y  138 (152)
T 3ihx_A           97 MMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWY  138 (152)
T ss_dssp             GGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEE
T ss_pred             eeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEec
Confidence            467999998   798887778999999999999999988543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=95.60  E-value=0.1  Score=52.45  Aligned_cols=80  Identities=8%  Similarity=-0.037  Sum_probs=46.9

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      .+++++|+..|+++.+.       .   -..+...|+.+|..    .+++++|+++++++++.       .+   ...++
T Consensus       128 ~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~  187 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQ-------G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCN  187 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred             CCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHH
Confidence            45556666555555321       1   13455566666665    55666666666666542       12   34566


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHH
Q 012772          397 TCGKLEWF----LGDTENAIKSMTEAVE  420 (456)
Q Consensus       397 ~La~~~~~----~g~~~eA~~~l~~Al~  420 (456)
                      .||.+|..    .+++++|.++|++|.+
T Consensus       188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  215 (490)
T 2xm6_A          188 QLGYMYSRGLGVERNDAISAQWYRKSAT  215 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence            67777766    6777777777777765

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.59  E-value=0.0086  Score=40.69  Aligned_cols=37  Identities=30%  Similarity=0.733  Sum_probs=30.7

Q ss_pred             CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhchh
Q 012772           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQV   69 (456)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~~   69 (456)
                      ...|.-|.. ...+.|++|.. +|||-.|.    +.|+..|.-
T Consensus        12 ~~~C~vC~~-~~kY~CPrC~~-~yCSl~C~----k~Hk~~C~~   48 (56)
T 2yqq_A           12 TVVCVICLE-KPKYRCPACRV-PYCSVVCF----RKHKEQCNP   48 (56)
T ss_dssp             CCCCTTTCS-CCSEECTTTCC-EESSHHHH----HHHHHHCCC
T ss_pred             CCccCcCcC-CCeeeCCCCCC-CeeCHHHH----HHHHhhCcC
Confidence            347999998 78899999998 89999997    477776764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.48  E-value=0.12  Score=52.38  Aligned_cols=54  Identities=13%  Similarity=0.022  Sum_probs=37.4

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  378 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  378 (456)
                      +...|++++|+++|++++.+     .|.++  ..++..++.++..+|++++|++.+++++.
T Consensus       331 ~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          331 EESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            44678889998888888752     44443  23566677777777777777777777764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=95.44  E-value=0.13  Score=51.56  Aligned_cols=79  Identities=10%  Similarity=-0.016  Sum_probs=41.2

Q ss_pred             cCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          321 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       321 ~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      .+++++|+..++++.+.       .+   ..+...|+.+|..    .+++++|+++++++...       .+   ...++
T Consensus        56 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~  115 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ-------GY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------GL---PQAQQ  115 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred             CcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHH
Confidence            56667777666666431       11   3445556666665    56666666666655431       12   12344


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHH
Q 012772          397 TCGKLEWF----LGDTENAIKSMTEAV  419 (456)
Q Consensus       397 ~La~~~~~----~g~~~eA~~~l~~Al  419 (456)
                      .||.+|..    .+++++|+.+|++|.
T Consensus       116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~  142 (490)
T 2xm6_A          116 NLGVMYHEGNGVKVDKAESVKWFRLAA  142 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            45555544    445555555555543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.36  E-value=0.068  Score=54.35  Aligned_cols=86  Identities=12%  Similarity=0.052  Sum_probs=62.1

Q ss_pred             cCChH-------HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          321 CGNHQ-------EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       321 ~g~~~-------~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .|+++       +|+..+++++.    .+.|.   -..++..++.++...|++++|...+++++.+     ++.++.  .
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~----~~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~  357 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAIS----TLLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--L  357 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTT----TTCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHH--H
T ss_pred             ccchhhhhhhhHHHHHHHHHHHH----HhCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCch--H
Confidence            68877       77777776653    12233   3567788899999999999999999999863     444442  4


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .+..+|.++..+|++++|++.|++|++
T Consensus       358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          358 VYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            666777777777777777777777765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.30  E-value=0.2  Score=38.02  Aligned_cols=65  Identities=11%  Similarity=-0.102  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012772          324 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  401 (456)
Q Consensus       324 ~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~  401 (456)
                      .++|..++++++.+        +|.-.+++..++..+...|+|++|+.+.++++.    ..|+ .|.+...-..+..+
T Consensus        25 ~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~----~~p~-~~~~~~i~~~I~~A   89 (93)
T 3bee_A           25 TDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD----SNDP-NLDRVTIIESINKA   89 (93)
T ss_dssp             CHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----CCCT-TCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCC-CccHHHHHHHHHHH
Confidence            68999999998864        334467778899999999999999999999875    3555 77776666666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.14  E-value=0.032  Score=47.18  Aligned_cols=48  Identities=8%  Similarity=0.063  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHH
Q 012772          324 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-----------DWKEALAYCQLTIPV  379 (456)
Q Consensus       324 ~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-----------~~~~A~~~~~~~l~~  379 (456)
                      +++|+..|++++++        +|....++.+++.+|..+|           +|++|++++++++++
T Consensus        62 ~~eAi~~le~AL~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           62 IQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            45777777777654        3445678889999999875           899999999999875

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=95.11  E-value=0.0067  Score=41.48  Aligned_cols=36  Identities=28%  Similarity=0.696  Sum_probs=29.6

Q ss_pred             CccCcCcCC---CCCCccCcCCCCcccccHHhhhhcHHHhHHhch
Q 012772           27 ISRCDGCFA---SSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ   68 (456)
Q Consensus        27 ~~~C~~C~~---~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC~   68 (456)
                      ...|.-|..   ....+.||+|.. +|||-.|.+    .|+ +|.
T Consensus        11 ~~~C~vC~~~~~~~akY~CPrC~~-rYCSl~C~k----~Hk-~Cs   49 (59)
T 1x4s_A           11 AGPCGFCPAGEVQPARYTCPRCNA-PYCSLRCYR----THG-TCA   49 (59)
T ss_dssp             CEEECSSCTTCCEEECEECTTTCC-EESSHHHHH----HHC-CGG
T ss_pred             CCcCcCCCCCcCCCccccCcCCCC-CccChHHHH----HHh-HhC
Confidence            468999986   356899999998 799999985    677 785

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.09  E-value=0.084  Score=43.20  Aligned_cols=76  Identities=12%  Similarity=0.030  Sum_probs=60.1

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  402 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~  402 (456)
                      ++++|++.|+++.+.     +  ++.-.     |+.+|...+.+++|+++++++.+.       .|   ...+++||.+|
T Consensus        10 d~~~A~~~~~~aa~~-----g--~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y   67 (138)
T 1klx_A           10 DLKKAIQYYVKACEL-----N--EMFGC-----LSLVSNSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHT-----T--CTTHH-----HHHHTCTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcC-----C--CHhhh-----HHHHHHcCCCHHHHHHHHHHHHcC-------CC---HHHHHHHHHHH
Confidence            567888888877542     2  22222     888888888999999999998764       33   46789999999


Q ss_pred             HH----cCCHHHHHHHHHHHHH
Q 012772          403 WF----LGDTENAIKSMTEAVE  420 (456)
Q Consensus       403 ~~----~g~~~eA~~~l~~Al~  420 (456)
                      ..    .+++++|.++|++|.+
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~   89 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACG   89 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHH
T ss_pred             HcCCCCCccHHHHHHHHHHHHc
Confidence            98    8999999999999976

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.07  E-value=0.4  Score=45.16  Aligned_cols=111  Identities=11%  Similarity=0.031  Sum_probs=71.5

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHH
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF--HPLLGLQYYTCGK  400 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~--hp~~~~~l~~La~  400 (456)
                      ++++|..+|+++..    .+ |+ ......+   ..++..+|+|++|....++++..+-.+-..+  .|.-+..+.++..
T Consensus       193 ~~q~A~~~f~El~~----~~-p~-~~~~~lL---ln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~  263 (310)
T 3mv2_B          193 TATSNFYYYEELSQ----TF-PT-WKTQLGL---LNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT  263 (310)
T ss_dssp             TTTHHHHHHHHHHT----TS-CS-HHHHHHH---HHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH----hC-CC-cccHHHH---HHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence            88999888887642    12 22 0111222   2279999999999999987766542211110  1333555777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          401 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       401 ~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      +...+|+  +|.+++.++++     .-|+||.+.+...+=+....-+..
T Consensus       264 l~~~lgk--~a~~l~~qL~~-----~~P~hp~i~d~~~k~~~Fd~~~~k  305 (310)
T 3mv2_B          264 LALMQGL--DTEDLTNQLVK-----LDHEHAFIKHHQEIDAKFDELVRK  305 (310)
T ss_dssp             HHHHTTC--TTHHHHHHHHH-----TTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCh--HHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHHHHH
Confidence            7778887  78888887765     458999999888775555443333

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.95  E-value=0.076  Score=59.68  Aligned_cols=95  Identities=9%  Similarity=-0.020  Sum_probs=69.3

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--------
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR--------  382 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~--------  382 (456)
                      ....|..+.+.|+|++|...|.++                ..+..++..|.++|++++|++.++++....-+        
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345666777888999888888764                35678899999999999999999888654221        


Q ss_pred             ---------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          383 ---------VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       383 ---------~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                               ..|-.-..-+..+.+++..|...|.+++|+.++++|+.+
T Consensus      1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1262 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             hhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence                     112111122335668888899999999999999999654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=94.89  E-value=0.041  Score=54.64  Aligned_cols=83  Identities=14%  Similarity=0.027  Sum_probs=56.5

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .|..+...|++++|++.++++.          +   ..++..+..++...|+|+.|...+..+         ..||.-  
T Consensus       154 LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~--  209 (449)
T 1b89_A          154 LASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE--  209 (449)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH--
T ss_pred             HHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh--
Confidence            4555666777777777666551          1   345566677777777777775554431         145554  


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                       +..+..+|...|++++|..+|++|+.+
T Consensus       210 -l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          210 -LEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             -HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             -HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence             446888899999999999999998743

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}

Probab=94.84  E-value=0.017  Score=51.82  Aligned_cols=39  Identities=13%  Similarity=-0.020  Sum_probs=33.6

Q ss_pred             cccccCCCc---CCCeeEEeCCEEEEEEecCCCCCCcccCCh
Q 012772          219 ISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       219 ~sl~NHSC~---PN~~~~f~~~~~~vra~~~I~~Gee~~~~~  257 (456)
                      +.++||+|.   +|+...-.++++.++|+|+|.+|+|+.+.+
T Consensus       141 mRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwY  182 (237)
T 3ray_A          141 MRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWY  182 (237)
T ss_dssp             GGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEE
T ss_pred             eeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEee
Confidence            468999996   688887778999999999999999988554

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=94.77  E-value=0.44  Score=42.38  Aligned_cols=97  Identities=9%  Similarity=-0.036  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012772          328 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  402 (456)
Q Consensus       328 ~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~  402 (456)
                      ..++..++.+..+.|-|..-.-+-.+..-|..|..     .|+-+.|.+.|+.+.++.+.-+||.||.+.....+.+..|
T Consensus        98 ~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFy  177 (227)
T 2o8p_A           98 KAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYIL  177 (227)
T ss_dssp             HHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Confidence            34556666666666666541111111222233332     4678899999999999999889999999988888888887


Q ss_pred             HH-cCCHHHHHHHHHHHHHHHHH
Q 012772          403 WF-LGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       403 ~~-~g~~~eA~~~l~~Al~i~~~  424 (456)
                      .. +++.++|..+.++|.++.+.
T Consensus       178 YEIln~p~~Ac~lAk~Afd~~~~  200 (227)
T 2o8p_A          178 SEKYGEKKQVFNMLNSLGKILEL  200 (227)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHH
Confidence            76 68899999999999997643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.51  E-value=0.2  Score=46.62  Aligned_cols=86  Identities=12%  Similarity=-0.046  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHH
Q 012772          325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTC  398 (456)
Q Consensus       325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~-----g~~~~A~~~~~~~l~~~e~~~g~~hp~~-~~~l~~L  398 (456)
                      .+|..++++++++-.      +..-..++..|+.+|...     |+.++|.++++++|.+        +|.- ....+..
T Consensus       180 ~~A~a~lerAleLDP------~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v~Y  245 (301)
T 3u64_A          180 HAAVMMLERACDLWP------SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHITY  245 (301)
T ss_dssp             HHHHHHHHHHHHHCT------THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHhCC------CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHHHH
Confidence            556666666665522      222466888999999985     9999999999999974        3332 4567777


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHHHHH
Q 012772          399 GKLEWF-LGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       399 a~~~~~-~g~~~eA~~~l~~Al~i~~~  424 (456)
                      |..+.. +|++++|..+|++|+++=-.
T Consensus       246 A~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          246 ADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            888877 59999999999999885433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.23  E-value=0.47  Score=40.05  Aligned_cols=99  Identities=13%  Similarity=0.035  Sum_probs=69.7

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----
Q 012772          355 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN----  429 (456)
Q Consensus       355 ~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~----  429 (456)
                      .-+..+.+.|.|+.|+-.+..++.+.+.--....| ..+..+..+|.+++..|+|..|..+|++|+...+...-..    
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            34455677899999999999988876531112234 3455888999999999999999999999999888542111    


Q ss_pred             -------------CchHHHHHHHHHHHHHHHHhhhcc
Q 012772          430 -------------SPFMKELILKLEEAQAEASYKLSS  453 (456)
Q Consensus       430 -------------h~~~~~~~~~l~~~~~e~~~~~~~  453 (456)
                                   -+.-.++..+++.|..++...+.|
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence                         112246778888888776655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=93.68  E-value=0.23  Score=49.51  Aligned_cols=57  Identities=23%  Similarity=0.207  Sum_probs=29.1

Q ss_pred             HHHHHHHH-H--HHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 012772          352 TREKLIKI-L--MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-----DTENAIKSMTEAV  419 (456)
Q Consensus       352 ~~~~L~~~-~--~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g-----~~~eA~~~l~~Al  419 (456)
                      +..+|+.+ |  ...|++++|+++++++.+.       .   ....+++||.+|. .|     ++++|+.+|++|.
T Consensus       250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-------g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-------D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            34455554 2  2345555555555554421       1   2335556666655 44     5666666666555

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=93.41  E-value=0.044  Score=54.42  Aligned_cols=54  Identities=9%  Similarity=0.029  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++.++|..+...|+|++|..++.++                ..+..||.++.++|++++|++.+++|..+
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~  177 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST  177 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence            7889999999999999999999876                47889999999999999999999999544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.24  E-value=0.66  Score=45.94  Aligned_cols=101  Identities=6%  Similarity=-0.116  Sum_probs=76.8

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      .+.|.-+.+.|++++|.+.|.++....   .++  ...+++.-.++.++...++|..+..+..++.....   ...+|.+
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~---~~~d~~~  206 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKA---IST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE---KGGDWER  206 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHH---TCC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---TCCCTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhc---CCh--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh---cCCCHHH
Confidence            456666778899999999999886543   233  45678888999999999999999999999876544   3445544


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          392 -GLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       392 -~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                       +....--|.+++..++|.+|.++|.++..
T Consensus       207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence             34444557778889999999999987654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.20  E-value=0.85  Score=37.87  Aligned_cols=87  Identities=11%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 012772          325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  404 (456)
Q Consensus       325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~  404 (456)
                      ++.++.|+++.......-+......+.+.-..|. +...++.++|.+.++.++.+        |...|..+...|+.-..
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiR  106 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFELS  106 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHH
Confidence            6667777777643211101122223333333332 24568999999999999885        44447777778888888


Q ss_pred             cCCHHHHHHHHHHHHH
Q 012772          405 LGDTENAIKSMTEAVE  420 (456)
Q Consensus       405 ~g~~~eA~~~l~~Al~  420 (456)
                      +|+...|.+.|.+|+.
T Consensus       107 qgnl~kARkILg~AiG  122 (161)
T 4h7y_A          107 QGNVKKSKQLLQKAVE  122 (161)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhc
Confidence            9999999999999998

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.20  E-value=0.22  Score=48.07  Aligned_cols=66  Identities=17%  Similarity=0.036  Sum_probs=53.9

Q ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          347 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +....++..++.++...|++++|+.++++++.+-        |. ...+..+|+++...|++++|.+.|.+|+.+
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3344555667777777899999999999999862        22 456788999999999999999999999986

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.15  E-value=1.2  Score=35.86  Aligned_cols=86  Identities=13%  Similarity=0.042  Sum_probs=61.3

Q ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772          348 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  426 (456)
Q Consensus       348 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~  426 (456)
                      ...++..++|.++.....-..    -++.+.+.+.++...+| ..-..+|.||..+.++|+|++|+.+.+..+++     
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-----  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence            556888889998888655322    23344455556665667 56679999999999999999999999888774     


Q ss_pred             CCCCchHHHHHHHHHH
Q 012772          427 GTNSPFMKELILKLEE  442 (456)
Q Consensus       427 G~~h~~~~~~~~~l~~  442 (456)
                      -|+++....+...+.+
T Consensus       104 eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A          104 EPQNNQAKELERLIDK  119 (126)
T ss_dssp             CTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            4566666655554443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=92.83  E-value=0.42  Score=39.87  Aligned_cols=71  Identities=10%  Similarity=-0.026  Sum_probs=51.3

Q ss_pred             HHHHHHHHhhhhcC---ChHHHHHHHHHHHHHHHhhcCCCCc-cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 012772          309 NILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  384 (456)
Q Consensus       309 ~~l~~~a~~~~~~g---~~~~a~~~~~~~~~~~~~~l~p~h~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~  384 (456)
                      ++.+.-|..+..+.   +.++++.+++.+++.       ++| ..-+.++.|+..|.++|+|++|+++++++|++     
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-----  100 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----  100 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Confidence            34455666666665   556777777776643       123 35678899999999999999999999999864     


Q ss_pred             CCCChHH
Q 012772          385 PQFHPLL  391 (456)
Q Consensus       385 g~~hp~~  391 (456)
                      -|+|+.-
T Consensus       101 eP~n~QA  107 (152)
T 1pc2_A          101 EPQNNQA  107 (152)
T ss_dssp             CTTCHHH
T ss_pred             CCCCHHH
Confidence            2456553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=92.63  E-value=0.47  Score=47.16  Aligned_cols=80  Identities=14%  Similarity=0.027  Sum_probs=55.6

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-----DWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-----~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      ...+++++|++.|+++.+.     +     ...+..+|+.+|. .|     ++++|+.+++++.        +.+   ..
T Consensus       262 ~~~~d~~~A~~~~~~Aa~~-----g-----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~---~~  319 (452)
T 3e4b_A          262 PELGDVEQMMKYLDNGRAA-----D-----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GRE---VA  319 (452)
T ss_dssp             GGGCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTC---HH
T ss_pred             CCCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCC---HH
Confidence            3578889998888887532     1     2456778888887 44     8888888887764        233   35


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWF----LGDTENAIKSMTEAVE  420 (456)
Q Consensus       394 ~l~~La~~~~~----~g~~~eA~~~l~~Al~  420 (456)
                      .+++||.+|..    ..++++|..+|++|.+
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            67777877765    2377778888877764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.50  E-value=6.7  Score=38.10  Aligned_cols=81  Identities=17%  Similarity=0.097  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  431 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~  431 (456)
                      +-..|+.+|...|+|.+|++.+.+++.-.++.-  +-..+.-.+..-.++|..+|++.++..+|.+|..+....+  .||
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d--d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p  176 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLD--DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPP  176 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS--CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCH
Confidence            445899999999999999999999988776642  2344444555668889999999999999999999988765  677


Q ss_pred             hHHHH
Q 012772          432 FMKEL  436 (456)
Q Consensus       432 ~~~~~  436 (456)
                      .+...
T Consensus       177 ~i~a~  181 (394)
T 3txn_A          177 KVQGA  181 (394)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.24  E-value=2.9  Score=41.49  Aligned_cols=104  Identities=11%  Similarity=0.009  Sum_probs=76.3

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCC-CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH-HH
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GL  393 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~-h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~-~~  393 (456)
                      .-+.++|++.+|.+++..+..   ...+.. ....++.+...+.+|...++|.+|..+..++..-....  +.+|.+ +.
T Consensus       145 ~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~  219 (445)
T 4b4t_P          145 EIKKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLE  219 (445)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHH
Confidence            335567999999998777652   334433 33467777888899999999999999998875433222  445554 55


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      .+.-.|.++.+.++|.+|-.+|.++.+....
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            6666788999999999999999988776544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.45  E-value=2.1  Score=43.28  Aligned_cols=89  Identities=8%  Similarity=0.008  Sum_probs=67.8

Q ss_pred             hhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          318 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       318 ~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      +...|++++|.+++++..+   .-+.|    -..+++.|+..|.+.|++++|.+++.++...      +..|. ..++..
T Consensus       115 ~~~~g~~~~A~~l~~~M~~---~g~~P----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------G~~Pd-~~ty~~  180 (501)
T 4g26_A          115 AVAKDDPEMAFDMVKQMKA---FGIQP----RLRSYGPALFGFCRKGDADKAYEVDAHMVES------EVVPE-EPELAA  180 (501)
T ss_dssp             HHHHTCHHHHHHHHHHHHH---TTCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCCCC-HHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHH---cCCCC----ccceehHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCC-HHHHHH
Confidence            4456899999999887753   22333    2567888999999999999999999887631      33343 357788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      |-..+...|+.++|.++|++-.+
T Consensus       181 Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          181 LLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHH
Confidence            88889999999999999987543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=91.44  E-value=0.55  Score=44.22  Aligned_cols=55  Identities=9%  Similarity=-0.073  Sum_probs=41.6

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI  377 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l  377 (456)
                      .+...|++++|++.+++.+.     .+| +...+.++..++.++..+|+.+.|.+..+++.
T Consensus       109 i~~~~g~~eeAL~~l~~~i~-----~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B          109 AQAILGDLDKSLETCVEGID-----NDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             HHHHHTCHHHHHHHHHHHHT-----SSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhc-----cCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34456999999988776532     122 25678888899999999999999999987654

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=91.07  E-value=2.1  Score=38.55  Aligned_cols=78  Identities=12%  Similarity=-0.005  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH---hcCCCCchHHHHHHHHH
Q 012772          366 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLE  441 (456)
Q Consensus       366 ~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~---~~G~~h~~~~~~~~~l~  441 (456)
                      -+.|.+.|+++..+.+.-+||.||.+.....+.+..|.. +++.++|..+.++|.+--..   +++.++  +.+...-|.
T Consensus       147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~eld~l~ees--ykDstlImq  224 (248)
T 3uzd_A          147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDS--YKDSTLIMQ  224 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTT--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCccc--hHHHHHHHH
Confidence            357888899999999889999999999999999888877 68999999888887664333   234443  344434444


Q ss_pred             HHHH
Q 012772          442 EAQA  445 (456)
Q Consensus       442 ~~~~  445 (456)
                      .++.
T Consensus       225 LLRD  228 (248)
T 3uzd_A          225 LLRD  228 (248)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=90.35  E-value=6.5  Score=35.69  Aligned_cols=55  Identities=11%  Similarity=0.063  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 012772          367 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEI  421 (456)
Q Consensus       367 ~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i  421 (456)
                      +.|.+.|+++..+.+.-+||.||.+.....+.+..|.. +++.++|..+.++|.+-
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            47888899999999888999999999988888888877 68988888877766543

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=89.80  E-value=11  Score=33.75  Aligned_cols=58  Identities=12%  Similarity=0.070  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Q 012772          367 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       367 ~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~  424 (456)
                      +.|.+.|++++++.+.-+||.||.+.....+.+..|.. +++.++|..+.++|.+--..
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~  205 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA  205 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            57888999999999888999999999988888888776 79999999888887764333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=88.97  E-value=4  Score=41.82  Aligned_cols=87  Identities=15%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             hcCCh-HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHHHHHhcCCCC
Q 012772          320 SCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED----------WKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       320 ~~g~~-~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~----------~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ..|++ ++|++.+.+++.+     .|.|+   .+++.-+.++..+|+          +++|++++.+++.        .+
T Consensus        40 ~~~~~~eeal~~~~~~l~~-----nP~~~---taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--------~~  103 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA-----NPDFA---TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--------VN  103 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--------HC
T ss_pred             HcCCCCHHHHHHHHHHHHH-----CchhH---HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--------hC
Confidence            34544 5778888888753     35554   444555555666666          8999999888875        34


Q ss_pred             hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLG--DTENAIKSMTEAVEIL  422 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g--~~~eA~~~l~~Al~i~  422 (456)
                      |.-...++.-+-++...|  +++++++.+.+|+++-
T Consensus       104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d  139 (567)
T 1dce_A          104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD  139 (567)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc
Confidence            444555666677777778  6689999998888863

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=88.97  E-value=6  Score=35.94  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCccHHHHH--HHHHHHHHHc-----c-----CHHHHHHHHHHHHHHHHHhc--CCCChHHH
Q 012772          327 VVSTYKMIEKLQKKLYHPFSVNLMQTR--EKLIKILMEL-----E-----DWKEALAYCQLTIPVYQRVY--PQFHPLLG  392 (456)
Q Consensus       327 a~~~~~~~~~~~~~~l~p~h~~~~~~~--~~L~~~~~~~-----g-----~~~~A~~~~~~~l~~~e~~~--g~~hp~~~  392 (456)
                      ...++..++.+..+.|-|....-..+.  ..-|..|..+     |     --+.|.+.|+++.++.+.-+  ||.||.+.
T Consensus       117 L~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRL  196 (268)
T 3efz_A          117 ILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYL  196 (268)
T ss_dssp             HHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence            345566677776666655332212222  2223334332     2     23578889999999998889  99999999


Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWF-LGDTENAIKSMTEAVEI  421 (456)
Q Consensus       393 ~~l~~La~~~~~-~g~~~eA~~~l~~Al~i  421 (456)
                      ....+.+..|.. +++.++|..+.++|.+-
T Consensus       197 GLaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          197 ATILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999988876 68999999999998876

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=88.81  E-value=3.5  Score=37.35  Aligned_cols=78  Identities=14%  Similarity=0.102  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH---hcCCCCchHHHHHHHHHH
Q 012772          367 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE  442 (456)
Q Consensus       367 ~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~---~~G~~h~~~~~~~~~l~~  442 (456)
                      +.|.+.|+++.++.+.-+||.||.+.....+.+..|.. +++.++|..+.++|.+--..   +++.++  +.+....|+.
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L~ees--ykDstlImQL  250 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEES--YKDSTLIMQL  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhh--hHHHHHHHHH
Confidence            56888999999998889999999999999999888877 68999998888877654332   244444  4444444444


Q ss_pred             HHHH
Q 012772          443 AQAE  446 (456)
Q Consensus       443 ~~~e  446 (456)
                      ++..
T Consensus       251 LRDN  254 (261)
T 3ubw_A          251 LRDN  254 (261)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.72  E-value=3.2  Score=33.25  Aligned_cols=65  Identities=14%  Similarity=0.044  Sum_probs=44.2

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCc-cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      .+.-|..+..+....+.    ++.+.+.+.++...++ ..-..++.||..+.++|+|.+|++++..+|.+
T Consensus        38 ~F~yAw~Lv~S~~~~d~----~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           38 QFEYAWCLVRTRYNDDI----RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHTTSSSHHHH----HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHH----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34555555555444432    2233344455554434 56788899999999999999999999999864

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=88.36  E-value=12  Score=33.33  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 012772          366 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEI  421 (456)
Q Consensus       366 ~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i  421 (456)
                      -+.|.+.|+++.++.+.-+||.||.+.....+.+..|.. +++.++|..+.++|.+-
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~  205 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE  205 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            357888899999999989999999999988899888776 58899998888887653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=88.21  E-value=2.2  Score=43.00  Aligned_cols=63  Identities=17%  Similarity=0.097  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  420 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~  420 (456)
                      .+.+..||.+..+.+.+..|..||.+++.+        .|..|..++.||.++...|+.-+|.-+|.||+.
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            456677888888889999999999999864        688899999999999999999999999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=87.69  E-value=3.3  Score=38.79  Aligned_cols=86  Identities=7%  Similarity=-0.069  Sum_probs=55.1

Q ss_pred             cCCh-HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          321 CGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       321 ~g~~-~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g--~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      .|.+ ++|++++.+++.+     -|.|+   .+.+.-+.++..+|  ++++++++..++|..    .|.. .   ...+.
T Consensus        45 ~~e~s~~aL~~t~~~L~~-----nP~~~---taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~-y---~aW~~  108 (306)
T 3dra_A           45 AEEYSERALHITELGINE-----LASHY---TIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKN-Y---QIWNY  108 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTC-C---HHHHH
T ss_pred             cCCCCHHHHHHHHHHHHH-----CcHHH---HHHHHHHHHHHHcccccHHHHHHHHHHHHHH----Cccc-H---HHHHH
Confidence            3444 6899988888764     35554   44555566777788  999999999998853    2322 2   22222


Q ss_pred             HHHHH----HHc---CCHHHHHHHHHHHHHHH
Q 012772          398 CGKLE----WFL---GDTENAIKSMTEAVEIL  422 (456)
Q Consensus       398 La~~~----~~~---g~~~eA~~~l~~Al~i~  422 (456)
                      -+.++    ...   ++++++++++.+++++-
T Consensus       109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~  140 (306)
T 3dra_A          109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSD  140 (306)
T ss_dssp             HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccCCHHHHHHHHHHHHHhC
Confidence            22222    334   67888888888887643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=87.45  E-value=11  Score=30.88  Aligned_cols=82  Identities=15%  Similarity=-0.024  Sum_probs=58.4

Q ss_pred             ccHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          347 VNLMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       347 ~~~~~~~~~L~~~~~~~g---~~~~A~~~~~~~l~~~e~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      ....++..++|..++...   +..+++.+.+.++.        .+| ..-..+|.||..+.++|+|++|+.+.+..+++ 
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~-  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-
Confidence            356777888888888754   44566666655543        233 46668999999999999999999998887763 


Q ss_pred             HHhcCCCCchHHHHHHHHH
Q 012772          423 RITHGTNSPFMKELILKLE  441 (456)
Q Consensus       423 ~~~~G~~h~~~~~~~~~l~  441 (456)
                          -|++.....+...+.
T Consensus       107 ----eP~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A          107 ----ERNNKQVGALKSMVE  121 (144)
T ss_dssp             ----CCCCHHHHHHHHHHH
T ss_pred             ----CCCcHHHHHHHHHHH
Confidence                566666665555444

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=87.36  E-value=5.4  Score=36.19  Aligned_cols=57  Identities=19%  Similarity=0.129  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Q 012772          367 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       367 ~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~  424 (456)
                      +.|.+.|+++.++. .-+||.||.+.....+.+..|.. +++.++|..+.++|.+--..
T Consensus       173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~  230 (260)
T 2npm_A          173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE  230 (260)
T ss_dssp             HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            56888899999988 88999999999988888888877 79999999888887764433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.03  E-value=4  Score=43.09  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHHhcC-CCChHHHHHHHHH---------H-HHHHHcCCHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPV--YQRVYP-QFHPLLGLQYYTC---------G-KLEWFLGDTENAIKSMTE  417 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~--~e~~~g-~~hp~~~~~l~~L---------a-~~~~~~g~~~eA~~~l~~  417 (456)
                      .....||..+.+.|+++.|++.+.++-+.  ...++- ...+.....+-++         | .++..+|++++|+++|.+
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence            56789999999999999999999875221  111111 2222222222121         2 245567899999988764


Q ss_pred             ------HHHHHHHhcCCCCchHHHHHHHHHH
Q 012772          418 ------AVEILRITHGTNSPFMKELILKLEE  442 (456)
Q Consensus       418 ------Al~i~~~~~G~~h~~~~~~~~~l~~  442 (456)
                            |+.+- ++||+.+..+.+++...++
T Consensus       762 ~~~~~~A~~lA-~~~~~~~~~i~~~~~~~~~  791 (814)
T 3mkq_A          762 SQRFSEAAFLG-STYGLGDNEVNDIVTKWKE  791 (814)
T ss_dssp             TTCHHHHHHHH-HHTTCCHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHH-HHhCCChHHHHHHHHHHHH
Confidence                  55544 4577776446666655553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=86.91  E-value=10  Score=35.18  Aligned_cols=76  Identities=11%  Similarity=-0.096  Sum_probs=51.0

Q ss_pred             cCCCCccHHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-----
Q 012772          342 YHPFSVNLMQTREKLIKILME---L--E------DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-----  405 (456)
Q Consensus       342 l~p~h~~~~~~~~~L~~~~~~---~--g------~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~-----  405 (456)
                      +...++.-+..+...+.+...   .  |      ...+|....++++++      ...-.-|..+.-||.+|...     
T Consensus       144 l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL------DP~~~~GsA~~~LG~lY~~vPp~~g  217 (301)
T 3u64_A          144 LSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL------WPSYQEGAVWNVLTKFYAAAPESFG  217 (301)
T ss_dssp             HTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH------CTTHHHHHHHHHHHHHHHHSCTTTT
T ss_pred             HHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHhCCCccC
Confidence            334445556666666655432   1  3      345666666666654      22333577888999999885     


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 012772          406 GDTENAIKSMTEAVEILR  423 (456)
Q Consensus       406 g~~~eA~~~l~~Al~i~~  423 (456)
                      |+.++|+.+|+||++|--
T Consensus       218 Gd~ekA~~~ferAL~LnP  235 (301)
T 3u64_A          218 GGMEKAHTAFEHLTRYCS  235 (301)
T ss_dssp             CCHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHhCC
Confidence            999999999999999753

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=86.18  E-value=4.5  Score=32.70  Aligned_cols=81  Identities=15%  Similarity=-0.012  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          349 LMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       349 ~~~~~~~L~~~~~~~g---~~~~A~~~~~~~l~~~e~~~g~~hp-~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      ..++..++|..+++..   +..+++.+...++.        .+| ..-..+|.||..+.++|+|++|+++.+..+++   
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~--------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---  107 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---  107 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence            4577788888887754   44456666554442        346 46778999999999999999999998877653   


Q ss_pred             hcCCCCchHHHHHHHHHH
Q 012772          425 THGTNSPFMKELILKLEE  442 (456)
Q Consensus       425 ~~G~~h~~~~~~~~~l~~  442 (456)
                        -|++.....+...+.+
T Consensus       108 --eP~N~QA~~Lk~~Ie~  123 (134)
T 3o48_A          108 --ERNNKQVGALKSMVED  123 (134)
T ss_dssp             --CTTCHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHH
Confidence              4566666655555444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.60  E-value=19  Score=33.65  Aligned_cols=21  Identities=14%  Similarity=-0.211  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHH
Q 012772          395 YYTCGKLEWFLGDTENAIKSM  415 (456)
Q Consensus       395 l~~La~~~~~~g~~~eA~~~l  415 (456)
                      +.-+|..+++.|++.+|+.+|
T Consensus       137 H~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A          137 HNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhhcCCHHHHHHHH
Confidence            444577777778888888776

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=85.49  E-value=8.2  Score=38.77  Aligned_cols=82  Identities=13%  Similarity=0.022  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 012772          324 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW  403 (456)
Q Consensus       324 ~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~  403 (456)
                      +++|.+++++...   .-+.|+    ..+++.|+..|.+.|++++|.++++++..     .| .-|. ..+++.|=..+.
T Consensus        86 l~~A~~lf~~M~~---~G~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-----~g-~~Pd-~~tyn~lI~~~~  151 (501)
T 4g26_A           86 LSRGFDIFKQMIV---DKVVPN----EATFTNGARLAVAKDDPEMAFDMVKQMKA-----FG-IQPR-LRSYGPALFGFC  151 (501)
T ss_dssp             HHHHHHHHHHHHH---TTCCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TT-CCCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---hCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCCc-cceehHHHHHHH
Confidence            4555555554432   222232    34678899999999999999999988753     12 2233 456777778888


Q ss_pred             HcCCHHHHHHHHHHHH
Q 012772          404 FLGDTENAIKSMTEAV  419 (456)
Q Consensus       404 ~~g~~~eA~~~l~~Al  419 (456)
                      ..|+.++|.+++++-.
T Consensus       152 ~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A          152 RKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            9999999999998754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=85.16  E-value=3.3  Score=42.42  Aligned_cols=86  Identities=9%  Similarity=-0.112  Sum_probs=63.9

Q ss_pred             hcC--ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          320 SCG--NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       320 ~~g--~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      .-|  +++++++.+.+++++     .|.|   ..+++.-+.+...+| .++++++++.+++.        .+|.-...++
T Consensus       119 ~l~~~~~~~el~~~~k~l~~-----d~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--------~~p~n~saW~  182 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEA-----DERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLIT--------RNFSNYSSWH  182 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--------TTCCCHHHHH
T ss_pred             HcccccHHHHHHHHHHHHhh-----cccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHH--------HCCCCccHHH
Confidence            345  679999999988864     3444   455666677777888 89999999988874        4566667777


Q ss_pred             HHHHHHHHc--------------CCHHHHHHHHHHHHHH
Q 012772          397 TCGKLEWFL--------------GDTENAIKSMTEAVEI  421 (456)
Q Consensus       397 ~La~~~~~~--------------g~~~eA~~~l~~Al~i  421 (456)
                      ..+.++..+              +.+++|++++.+|+.+
T Consensus       183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence            777777764              5578888888888865

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=84.17  E-value=3.3  Score=36.74  Aligned_cols=62  Identities=10%  Similarity=-0.050  Sum_probs=52.5

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQ  381 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~e  381 (456)
                      ..|+.+.|...|+.+..+..+-++|.||..+.+.-|.+..|.+ +++-++|..+.+++.++.+
T Consensus       137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~  199 (227)
T 2o8p_A          137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILE  199 (227)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            3466788899999999998888999999998888888877665 6899999999999988653

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=84.01  E-value=8.8  Score=28.12  Aligned_cols=59  Identities=20%  Similarity=0.148  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hcCCCCchHHHHHHHHHHHHHHHHh
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~--~~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      .|..+..-|.-.-..|++++|..+|.+|++.+..  .+.++...-..+..++.+-...++.
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~   70 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISY   70 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4555555566667899999999999999999876  3566666555566776666555544

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=82.56  E-value=12  Score=27.50  Aligned_cols=59  Identities=15%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHHh
Q 012772          391 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEASY  449 (456)
Q Consensus       391 ~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~--~G~~h~~~~~~~~~l~~~~~e~~~  449 (456)
                      .|..+..-|.-.-..|++++|..+|.+|++.+...  +.++...-..+..++.+-...++.
T Consensus        18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~   78 (83)
T 2w2u_A           18 MARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEV   78 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555567899999999999999988763  556655444455666665554443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.19  E-value=5.6  Score=32.54  Aligned_cols=78  Identities=12%  Similarity=-0.022  Sum_probs=49.2

Q ss_pred             cCCHHHHHHHHHHH----------HHHHHHHHhhhhcCCh---HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 012772          295 VRSKEEIKKIASEV----------NILSKKTLALTSCGNH---QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM  361 (456)
Q Consensus       295 ~~~~~~~~~~~~~~----------~~l~~~a~~~~~~g~~---~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~  361 (456)
                      +++++++..+-++.          ++.++-|..+..+...   .+++.+++.+...     +|.  ..-+.++.||..+.
T Consensus        16 ~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~--~~RdcLYyLAvg~y   88 (144)
T 1y8m_A           16 PLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AES--RRRECLYYLTIGCY   88 (144)
T ss_dssp             CCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCS--THHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Ccc--chhHHHHHHHHHHH
Confidence            45666665543222          3345566665554443   3444444444321     222  46778899999999


Q ss_pred             HccCHHHHHHHHHHHHHH
Q 012772          362 ELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       362 ~~g~~~~A~~~~~~~l~~  379 (456)
                      ++|+|.+|++++..+|.+
T Consensus        89 kl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           89 KLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TTTCHHHHHHHHHHHHHT
T ss_pred             HhhhHHHHHHHHHHHHhc
Confidence            999999999999998863

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.93  E-value=4.2  Score=40.87  Aligned_cols=76  Identities=11%  Similarity=0.070  Sum_probs=62.6

Q ss_pred             HhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 012772          339 KKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF---HPLLGLQYYTCGKLEWFLGDTENAIKSM  415 (456)
Q Consensus       339 ~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~---hp~~~~~l~~La~~~~~~g~~~eA~~~l  415 (456)
                      ...++-+....+.+.+.|...|...+.+++|..+..++      .+|..   ....+..+|-+|+++.-+++|.+|.++|
T Consensus       220 ta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~------~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L  293 (523)
T 4b4t_S          220 IASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKL------EYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI  293 (523)
T ss_dssp             HCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHH------CSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcC------cCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34566666667788888899999999999999997765      47744   3577889999999999999999999999


Q ss_pred             HHHHH
Q 012772          416 TEAVE  420 (456)
Q Consensus       416 ~~Al~  420 (456)
                      ..|+.
T Consensus       294 ~~A~r  298 (523)
T 4b4t_S          294 IAAIR  298 (523)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98763

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.70  E-value=5.7  Score=32.08  Aligned_cols=77  Identities=12%  Similarity=0.001  Sum_probs=49.4

Q ss_pred             cCCHHHHHHHHHHH----------HHHHHHHHhhhhcCCh---HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 012772          295 VRSKEEIKKIASEV----------NILSKKTLALTSCGNH---QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM  361 (456)
Q Consensus       295 ~~~~~~~~~~~~~~----------~~l~~~a~~~~~~g~~---~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~  361 (456)
                      +++++++..+.++.          ++.+.-|..+..+.+.   .+++.+++.+.+       .+....-+.++-||..+.
T Consensus        17 ~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~y   89 (134)
T 3o48_A           17 PLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCY   89 (134)
T ss_dssp             CCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHH
Confidence            45666665543322          3345566666555443   344555444432       111246788899999999


Q ss_pred             HccCHHHHHHHHHHHHH
Q 012772          362 ELEDWKEALAYCQLTIP  378 (456)
Q Consensus       362 ~~g~~~~A~~~~~~~l~  378 (456)
                      ++|+|++|++++..+|.
T Consensus        90 klgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           90 KLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHTCHHHHHHHHHHHHT
T ss_pred             HhhhHHHHHHHHHHHHh
Confidence            99999999999998885

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=81.49  E-value=4.4  Score=36.25  Aligned_cols=55  Identities=11%  Similarity=0.064  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Q 012772          325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPV  379 (456)
Q Consensus       325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~  379 (456)
                      +.|.+.|+.+..+....|+|.||..+.+.-+.+..|.+ +++-++|..+++++.+-
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~  202 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD  202 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46677888888888778999999999988888887776 79999999999988763

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=81.20  E-value=37  Score=32.00  Aligned_cols=19  Identities=32%  Similarity=0.258  Sum_probs=13.9

Q ss_pred             HHHHHHHHcCCHHHHHHHH
Q 012772          397 TCGKLEWFLGDTENAIKSM  415 (456)
Q Consensus       397 ~La~~~~~~g~~~eA~~~l  415 (456)
                      -+|..+++.+++.+|+.+|
T Consensus       141 ~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          141 VVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHH
Confidence            4577777778888877775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=81.07  E-value=11  Score=36.31  Aligned_cols=79  Identities=16%  Similarity=0.157  Sum_probs=59.5

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCCh
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHP  389 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g-~~hp  389 (456)
                      +...+..+...|++.+++..+++++.     .+|.+-   .++..|+.++...|+..+|++.|++.-..+..-+| .-.|
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~-----~~P~~E---~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~  245 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTF-----EHPYRE---PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  245 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            33445556678999999987777653     345553   45678999999999999999999999998888888 5567


Q ss_pred             HHHHHHHH
Q 012772          390 LLGLQYYT  397 (456)
Q Consensus       390 ~~~~~l~~  397 (456)
                      .+-..+..
T Consensus       246 ~l~~l~~~  253 (388)
T 2ff4_A          246 TLRALNER  253 (388)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555444

>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9

Probab=80.53  E-value=0.57  Score=32.98  Aligned_cols=13  Identities=31%  Similarity=0.772  Sum_probs=10.9

Q ss_pred             CcccccHHhhhhc
Q 012772           47 VVWYCGSNCQKLD   59 (456)
Q Consensus        47 ~v~yCs~~C~~~~   59 (456)
                      +++|||+.|+..|
T Consensus        27 ~rPFCSeRCr~iD   39 (68)
T 1lv3_A           27 FRPFCSKRCQLID   39 (68)
T ss_dssp             CCSSSSHHHHHHH
T ss_pred             CCcccCHHHHhhh
Confidence            4589999999775

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=80.51  E-value=5  Score=35.84  Aligned_cols=55  Identities=16%  Similarity=0.115  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Q 012772          325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPV  379 (456)
Q Consensus       325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~  379 (456)
                      +.|.+.|+.+..+..+.|+|.||..+.+.-+.+..|.+ +++-++|..+++++.+-
T Consensus       150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~  205 (236)
T 3iqu_A          150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE  205 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45677888888888788999999999988888887765 69999999999988763

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.22  E-value=15  Score=40.14  Aligned_cols=93  Identities=5%  Similarity=-0.127  Sum_probs=62.1

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  395 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l  395 (456)
                      +.+...|+.++|.++++...+...+-+.|+    ..+++.|+..|.+.|++++|.+++.++..   .-..|+.    .+|
T Consensus       135 dglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~---~G~~PDv----vTY  203 (1134)
T 3spa_A          135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKD---AGLTPDL----LSY  203 (1134)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCCCCH----HHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCcH----HHH
Confidence            345567999999998877654433333332    45788999999999999999999988753   2222443    334


Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHH
Q 012772          396 YTCGKLEWFLGDT-ENAIKSMTEAV  419 (456)
Q Consensus       396 ~~La~~~~~~g~~-~eA~~~l~~Al  419 (456)
                      +.|=..+...|+. ++|.+++++..
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~  228 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMS  228 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4444445566774 67777776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	2e-11
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	6e-11
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	7e-11

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          RC  C A +  K+CS CQ  WYC   CQ   W+ H   C
Sbjct: 10 RCAYCSAEA-SKRCSRCQNEWYCCRECQVKHWEKHGKTC 47

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 6e-11
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          C  C   + + +C+ C  V YC + CQ+ DWK H+  C
Sbjct: 2  CVNCGREA-MSECTGCHKVNYCSTFCQRKDWKDHQHIC 38

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 7e-11
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           S   C  C   +  + CS C    YCGS CQ  DW+ H   C
Sbjct: 6  DSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHIC 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	99.0
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	98.99
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.98
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.98
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	98.98
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.97
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	98.97
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.96
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.89
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.89
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.7
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.67
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.66
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	98.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.61
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.53
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.48
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.36
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.28
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.26
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	98.22
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.2
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.2
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.15
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.13
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	98.13
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.02
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	97.98
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.9
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.84
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.76
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.7
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.68
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.48
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.39
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.35
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.15
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.03
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.08
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.88
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.45
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	95.26
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.09
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.17
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	93.61
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.57
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	93.13
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	91.95
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	91.35
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	91.26
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	90.77
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	90.68
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	90.56
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	88.39
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	88.14
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	87.35
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	81.26

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.21  E-value=3.2e-10  Score=95.59  Aligned_cols=136  Identities=15%  Similarity=0.123  Sum_probs=110.1

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCC-----CccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-----SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  384 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~-----h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~  384 (456)
                      .....+.....+|+|++|+..|++++++.... +..     +...+.++.+++.+|..+|+|++|+..+++++.++.+..
T Consensus        11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~-~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhh-hhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            34455667778899999999999999886543 221     233567889999999999999999999999999988753


Q ss_pred             ---CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          385 ---PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       385 ---g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                         +..++..+..++++|.++..+|++++|+..|++|+++.....| +.+....++..+++....|
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHHHc
Confidence               3556788889999999999999999999999999999988766 5566777777766655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.7e-09  Score=84.59  Aligned_cols=121  Identities=13%  Similarity=0.152  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ...-+.+..+...|+|++|++.|.+++.+     .|.+   ..++.+++.+|..+|+|++|++.+.+++.+... .+..+
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~   75 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDY   75 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHH
Confidence            33445666778899999999999999864     4554   457889999999999999999999999987654 56778


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                      +.+|..+..+|.++..++++++|++++++|+..      ..++   +++..+.+++..+
T Consensus        76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~------~~~~---~~~~~l~~~~k~l  125 (128)
T d1elra_          76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE------HRTP---DVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCH---HHHHHHHHHHHHH
Confidence            999999999999999999999999999999863      1334   3445555555443

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.3e-11  Score=74.22  Aligned_cols=37  Identities=38%  Similarity=0.976  Sum_probs=34.3

Q ss_pred             CcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhc
Q 012772           30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (456)
Q Consensus        30 C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC   67 (456)
                      |..|.++ .+.+|++|+.|.|||++||+.+|+.|+.+|
T Consensus         2 C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C   38 (38)
T d2jw6a1           2 CVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHIC   38 (38)
T ss_dssp             CSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTT
T ss_pred             ccccCcc-ccccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            8889876 678999999999999999999999999988

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.99  E-value=9.3e-11  Score=107.68  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=61.6

Q ss_pred             CCCHHHHHHHHhhHhccccccccCCCCcceeeeccccccccCCCcCCCeeEEe-----------CCEEEEEEecCCCCCC
Q 012772          183 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE-----------GRLAVVRAVQHVPKGA  251 (456)
Q Consensus       183 ~~~~~~l~~~~~~~~~N~~~i~~~~~~~~g~glyp~~sl~NHSC~PN~~~~f~-----------~~~~~vra~~~I~~Ge  251 (456)
                      .++.+.....++.+.+++|.+.+    ..|.+|||.++|+||||.||+...|+           ++.++|||.|||++||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~~----~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GE  232 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRLR----NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE  232 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC-------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTS
T ss_pred             ccCHHHHHHHHHHhhcccccccc----cccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCC
Confidence            35666677777788888887644    56789999999999999999998875           2578999999999999


Q ss_pred             ccc--CChh--hHHHh-hCCcccc
Q 012772          252 EGQ--FDDI--QESAI-LEGYRCK  270 (456)
Q Consensus       252 e~~--~~~~--r~~~l-~~~f~C~  270 (456)
                      ||+  |.+.  ..+.| ..||.+.
T Consensus       233 EI~isYG~~~~n~~ll~~yGFv~~  256 (261)
T d2h2ja2         233 QVYIQYDLNKSNAELALDYGFIEP  256 (261)
T ss_dssp             BCEECSCSSCCHHHHHHHSSCCCS
T ss_pred             EEEEecCCCCCHHHHHHhCCCCCC
Confidence            975  6532  22233 2477653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.1e-09  Score=83.43  Aligned_cols=113  Identities=24%  Similarity=0.274  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          307 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       307 ~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      ++..+.+++..+...|++++|+..|++++.+     -|++   ..++.++|.+|..+|++++|+..+.+++.+       
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcc---hhhhhcccccccccccccccchhhhhHHHh-------
Confidence            3556677888899999999999999999864     2444   568889999999999999999999999864       


Q ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  440 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l  440 (456)
                       .|.-...++++|.++..+|++++|++.|++|++     .-|++|.+...+..+
T Consensus        67 -~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          67 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK-----HEANNPQLKEGLQNM  114 (117)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TCTTCHHHHHHHHHH
T ss_pred             -ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHH
Confidence             233445799999999999999999999999996     356777666554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.4e-08  Score=86.47  Aligned_cols=125  Identities=12%  Similarity=0.113  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCC-------CccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 012772          305 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-------SVNLMQTREKLIKILMELEDWKEALAYCQLTI  377 (456)
Q Consensus       305 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~-------h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l  377 (456)
                      ++.+..+.+.+..++.+|+|++|++.|++++..........       +.....++.+++.+|..+|+|++|+.++.++|
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            33456666788888899999999999999987643322222       23456677889999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 012772          378 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  442 (456)
Q Consensus       378 ~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~  442 (456)
                      .+        +|.-...++.+|.++..+|++++|+..|++|+++     .|+++.+...+..+..
T Consensus        90 ~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          90 EL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHH
T ss_pred             hc--------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence            76        4555668999999999999999999999999885     5778777665554433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-08  Score=85.08  Aligned_cols=112  Identities=13%  Similarity=0.084  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 012772          306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  385 (456)
Q Consensus       306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g  385 (456)
                      +.++.+..++..+...|+|++|+..|++++.+     .|+   -..++.+++.++..+|++++|+..+++++.+      
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------   73 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPS---NAIYYGNRSLAYLRTECYGYALGDATRAIEL------   73 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc-----chh---hhhhhhhhHHHHHhccccchHHHHHHHHHHH------
Confidence            45666778888899999999999999999864     344   4677889999999999999999999999975      


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772          386 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  438 (456)
Q Consensus       386 ~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~  438 (456)
                        .|.....++.+|.++..+|++++|+..+++|+.+     .|+++.....+.
T Consensus        74 --~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~~~~~~l~  119 (159)
T d1a17a_          74 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKYQ  119 (159)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHH
T ss_pred             --cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHH
Confidence              3556677999999999999999999999999885     567776655443

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.2e-10  Score=75.99  Aligned_cols=42  Identities=38%  Similarity=0.844  Sum_probs=37.8

Q ss_pred             CCCccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhc
Q 012772           25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (456)
Q Consensus        25 ~~~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC   67 (456)
                      .....|..|.++ .+.+|++|+.|+|||++||+.+|+.|+.+|
T Consensus         6 ~~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dj8a1           6 DSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHIC   47 (47)
T ss_dssp             CCSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTS
T ss_pred             cCCCcCCCCCcc-ccccCCCCCCeeeCCHHHHHHHHHHHhhhC
Confidence            356889999976 577899999999999999999999999988

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.97  E-value=9.9e-09  Score=85.86  Aligned_cols=128  Identities=11%  Similarity=0.049  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 012772          305 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--------VNLMQTREKLIKILMELEDWKEALAYCQLT  376 (456)
Q Consensus       305 ~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h--------~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~  376 (456)
                      .+++..+.+++..++.+|+|.+|+..|++++.+.........        ...+.++.++|.+|..+|+|++|++++.++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            345566677888888999999999999999875432221111        223567789999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          377 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       377 l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                      |.+        +|.-...++.+|.++..+|++++|+..|++|+++     .|+++.+.   ..+..+...+.
T Consensus        94 l~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-----~P~n~~~~---~~l~~~~~kl~  149 (153)
T d2fbna1          94 LKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIR---NSYELCVNKLK  149 (153)
T ss_dssp             HHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHH---HHHHHHHHHHH
T ss_pred             ccc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHH
Confidence            864        4555679999999999999999999999999987     46666554   44555554443

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.3e-10  Score=75.57  Aligned_cols=40  Identities=43%  Similarity=0.987  Sum_probs=36.4

Q ss_pred             CccCcCcCCCCCCccCcCCCCcccccHHhhhhcHHHhHHhc
Q 012772           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (456)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~~~~~H~~EC   67 (456)
                      .+.|.+|.++ ...+|++|+.++|||++||..||+.|+.+|
T Consensus         8 ~~~C~~Cg~~-~~~~Cs~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dana1           8 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTC   47 (47)
T ss_dssp             CCCCSSSCCC-CCEECTTTSCSEESSHHHHHHTHHHHTTTC
T ss_pred             CCcCcCCCCh-hhccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            4579999987 567999999999999999999999999887

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=9.8e-09  Score=89.14  Aligned_cols=103  Identities=13%  Similarity=0.124  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      +..+.+.+..+...|+|++|+..|++++.+     .|.+   ..++.++|.+|..+|+|++|+.++++++.+        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~---~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            345566777888999999999999999865     2444   678889999999999999999999999853        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  426 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~  426 (456)
                      .|.....++++|.++..+|++++|+..|++|+++--...
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            556667899999999999999999999999999875543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.89  E-value=2.8e-08  Score=84.40  Aligned_cols=121  Identities=15%  Similarity=0.215  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCC-------CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772          306 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP-------FSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  378 (456)
Q Consensus       306 ~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p-------~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  378 (456)
                      +.+..+.+.+..+...|+|.+|+..|++++.........       .+.....++.+++.+|..+|+|++|+.++.+++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            445667778888999999999999999998765432222       2344667788999999999999999999999986


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 012772          379 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  439 (456)
Q Consensus       379 ~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~  439 (456)
                      +        +|.-...++.+|.++..+|++++|+..|++|+.+     .|+++.+...+..
T Consensus        93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~P~n~~~~~~l~~  140 (168)
T d1kt1a1          93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAARLQIFM  140 (168)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHH
T ss_pred             c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence            5        5566778999999999999999999999999864     5677665444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=4.4e-08  Score=83.10  Aligned_cols=122  Identities=13%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc--------CCCCccHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 012772          304 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY--------HPFSVNLMQTREKLIKILMELEDWKEALAYCQL  375 (456)
Q Consensus       304 ~~~~~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l--------~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~  375 (456)
                      +......+...+..+...|+|++|++.|++++.......        ...++....++.++|.+|..+|+|++|+..+.+
T Consensus        23 ~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  102 (169)
T d1ihga1          23 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  102 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhh
Confidence            333445555667777889999999999999876543211        123456778889999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772          376 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  438 (456)
Q Consensus       376 ~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~  438 (456)
                      +|.+        +|.-+..++.+|.++..+|++++|+..|++|+++     .|+++.+...+.
T Consensus       103 al~~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~~~~~~l~  152 (169)
T d1ihga1         103 ALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAELL  152 (169)
T ss_dssp             HHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred             hhhh--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Confidence            9854        4556678999999999999999999999999986     556665544433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.3e-08  Score=77.97  Aligned_cols=106  Identities=12%  Similarity=0.080  Sum_probs=79.3

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          317 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       317 ~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+.+.+++++|++.|++++.+     .|.   ...++.++|.++...   +++++|+.++++++..      ...|....
T Consensus         8 ~~~~~~~l~~Ae~~Y~~aL~~-----~p~---~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~~~~~   73 (122)
T d1nzna_           8 ELVSVEDLLKFEKKFQSEKAA-----GSV---SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-----SCC---CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhh-----CCC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCchHHH
Confidence            445667889999999998764     344   466788999999864   4556677776665531      22356667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  441 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~  441 (456)
                      .+++||.+|..+|++++|+++|++|+++     .|+|+....++..+.
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~-----~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQT-----EPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHh-----CcCCHHHHHHHHHHH
Confidence            8999999999999999999999999996     478877666555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=2.3e-07  Score=85.66  Aligned_cols=130  Identities=12%  Similarity=-0.007  Sum_probs=106.7

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+..+|+|++|++.|+++.++..+.  .+++..+.++.+++.+|..+|++++|++++++++.++...  +.....+
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~  117 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGA  117 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHH
Confidence            44555778899999999999999987664  4456689999999999999999999999999999998865  5666778


Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       393 ~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                      ..+.++|.++.. .|++++|+.+|++|+++....  .+.+....++.+++.+..++.
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g  172 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDG  172 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcC
Confidence            899999999865 699999999999999998875  234556667777777754443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.66  E-value=8.5e-08  Score=75.44  Aligned_cols=91  Identities=12%  Similarity=-0.022  Sum_probs=78.3

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+..+|++++|+..+++++..     .|++   ..++..+|.++..+|++++|+.++++++.+        +|.-.
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~   84 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQK-----EPER---EEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDI   84 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccc-----cccc---chhhhhhhhhhhhhhhHHHhhccccccccc--------ccccc
Confidence            3455667889999999999999764     3544   577889999999999999999999999875        56667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      ..++.||.++..+|++++|++.|+|.+
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            789999999999999999999999975

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=98.64  E-value=6.5e-09  Score=83.12  Aligned_cols=43  Identities=21%  Similarity=0.135  Sum_probs=36.4

Q ss_pred             eccccccccCCCcCCCeeEEe--CCEEEEEEecCCCCCCcccCCh
Q 012772          215 LYPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       215 lyp~~sl~NHSC~PN~~~~f~--~~~~~vra~~~I~~Gee~~~~~  257 (456)
                      ..+.++++||||.|||...++  +..+.++|+|+|++||||++++
T Consensus        61 ~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GEEL~~dY  105 (119)
T d2g46a1          61 ALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISY  105 (119)
T ss_dssp             CCSTTSSCCCCSSCCCEEEECSSSSEEEEECSSCBCTTEEECCCC
T ss_pred             ecCCeEEEEecCCcCceEEEECCCCEEEEEECcccCCCCEEEEec
Confidence            345688999999999998876  4679999999999999998554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.6e-07  Score=70.28  Aligned_cols=89  Identities=9%  Similarity=-0.068  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  429 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~  429 (456)
                      +.-...+|.++.++|+|.+|+.++++++.+... .+..++..+..+++||.++..+|++++|++++++|+++     -|+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcC
Confidence            344568999999999999999999999988764 45566788999999999999999999999999999987     477


Q ss_pred             CchHHHHHHHHHHHHHHH
Q 012772          430 SPFMKELILKLEEAQAEA  447 (456)
Q Consensus       430 h~~~~~~~~~l~~~~~e~  447 (456)
                      |+.   +..+|+..+..+
T Consensus        79 ~~~---a~~Nl~~~~~~l   93 (95)
T d1tjca_          79 HQR---ANGNLKYFEYIM   93 (95)
T ss_dssp             CHH---HHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHh
Confidence            764   556666655544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=5.2e-07  Score=77.13  Aligned_cols=123  Identities=7%  Similarity=-0.017  Sum_probs=98.2

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCC--------------CccHHHHHHHHHHHHHHccCHHHHHHHH
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--------------SVNLMQTREKLIKILMELEDWKEALAYC  373 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~--------------h~~~~~~~~~L~~~~~~~g~~~~A~~~~  373 (456)
                      .+.....+..+...|++++|++.|.+++.++...+-+.              ....+.+...++.++..+|+|++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            45556666777789999999999999988754322111              1235577889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-chHHHHHH
Q 012772          374 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PFMKELIL  438 (456)
Q Consensus       374 ~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h-~~~~~~~~  438 (456)
                      ++++.        .+|.--..+..|+.++..+|++++|+..|+++.+.+...+|-+- |.+..+..
T Consensus        91 ~~al~--------~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~  148 (179)
T d2ff4a2          91 EALTF--------EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE  148 (179)
T ss_dssp             HHHHH--------HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             HHHHH--------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence            99986        36666788999999999999999999999999999999999873 44444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=5.5e-07  Score=80.80  Aligned_cols=97  Identities=11%  Similarity=0.101  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      ......+..+...|++++|++.|++++.+     .|++   ..++.++|.+|..+|++++|++.+++++.+        +
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~  101 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAI-----RPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------D  101 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCCC---HHHHhhhchHHHHHHHHHHhhhhhhHHHHH--------H
Confidence            34456677788999999999999999864     3555   567889999999999999999999999974        3


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      |..+..++++|.++..+|++++|++.+++|+++
T Consensus       102 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         102 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            344457899999999999999999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.6e-07  Score=77.85  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 012772          308 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  387 (456)
Q Consensus       308 ~~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~  387 (456)
                      +-.+..++..+..+|+|++|++.|.++        .+.+   .+++.++|.+|..+|++++|++++++++.+        
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------   65 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV--------QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR--------   65 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS--------SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc--------CCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------
Confidence            345566777788899999998877542        2334   356789999999999999999999999974        


Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          388 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       388 hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      .|..+..++++|.++..+|++++|++.+++|+..+
T Consensus        66 dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          66 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            35667899999999999999999999999999754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.5e-06  Score=80.54  Aligned_cols=124  Identities=14%  Similarity=0.080  Sum_probs=104.7

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCC--ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      .|..+..+|++++|++++++++..    . |.+  ...+.++..++.+|..+|++++|+.++++++.+....  ++++..
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~----~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~   90 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEE----L-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYA   90 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT----C-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhh----C-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cchHHH
Confidence            455667899999999999998753    2 333  2346678899999999999999999999999887754  677888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  444 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~  444 (456)
                      +..+..++.++...|++.+|...+.+|+.+.....++.++....+...++.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  143 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  143 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988888777776666554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.6e-06  Score=80.31  Aligned_cols=116  Identities=18%  Similarity=0.198  Sum_probs=86.1

Q ss_pred             HHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q 012772          314 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  393 (456)
Q Consensus       314 ~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~  393 (456)
                      .+..+..+|++++|+..+++++..     .|++   ..++..+|.+|..+|++++|++++++++.+        .|..+.
T Consensus       178 l~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~  241 (323)
T d1fcha_         178 LGVLFNLSGEYDKAVDCFTAALSV-----RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIR  241 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             hHHHHHHHHHHhhhhccccccccc-----cccc---ccchhhhhhcccccccchhHHHHHHHHHHH--------hhccHH
Confidence            344556789999999999988753     3444   567789999999999999999999999864        244456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHH
Q 012772          394 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS---PFMKELILKLEEAQA  445 (456)
Q Consensus       394 ~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h---~~~~~~~~~l~~~~~  445 (456)
                      .+++||.++..+|++++|+.+|++|+++.....+..+   .....+...|..+..
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~  296 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS  296 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999998776544332   233334444444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.4e-06  Score=73.71  Aligned_cols=104  Identities=11%  Similarity=-0.015  Sum_probs=83.3

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-------h
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR-------V  383 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~-------~  383 (456)
                      ....+..+...|++++|++.|++++++        ++....++.++|.++..+|++++|+..+++++...+.       .
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            345666778899999999999999864        3344678899999999999999999999999864321       1


Q ss_pred             cC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          384 YP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       384 ~g-~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      .| ..++.-+..++++|.++..+|++++|...+.+|+.+-
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            22 2234446788999999999999999999999988764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=5.6e-06  Score=75.99  Aligned_cols=112  Identities=16%  Similarity=0.108  Sum_probs=92.4

Q ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          310 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQFH  388 (456)
Q Consensus       310 ~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~e~~~g~~h  388 (456)
                      .+...+..+...|++++|++.+++++.+....  ........+...++.+|.. .|++++|++++++++.+++..  ...
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~  154 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSV  154 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--Cch
Confidence            34455666778999999999999999887653  3455567888899988855 699999999999999988754  445


Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          389 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       389 p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      +..+..+.++|.++..+|++++|++.|++++.+....
T Consensus       155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            6778899999999999999999999999998876543

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=98.22  E-value=2.2e-07  Score=85.62  Aligned_cols=39  Identities=36%  Similarity=0.557  Sum_probs=32.2

Q ss_pred             cccccCCCcCCCeeEE--eC------CEEEEEEecCCCCCCcccCCh
Q 012772          219 ISIINHSCLPNAVLVF--EG------RLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       219 ~sl~NHSC~PN~~~~f--~~------~~~~vra~~~I~~Gee~~~~~  257 (456)
                      +.++||||.||+....  .+      .++.+.|+|+|++|||||++|
T Consensus       213 aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY  259 (284)
T d1ml9a_         213 TRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDY  259 (284)
T ss_dssp             GGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECT
T ss_pred             hheeeccccCCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEec
Confidence            5689999999998753  21      478999999999999999654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.3e-06  Score=79.05  Aligned_cols=110  Identities=18%  Similarity=0.191  Sum_probs=80.3

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      ..+..+...|++++|++.++.+...     .|.   .......++.++..+|++++|++++++++.+        +|..+
T Consensus       276 ~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~  339 (388)
T d1w3ba_         276 NLANALKEKGSVAEAEDCYNTALRL-----CPT---HADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFA  339 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhhcc-----CCc---cchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCH
Confidence            3445556677888888777766532     233   3455677888888999999999998888753        55667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  446 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~~l~~~~~e  446 (456)
                      ..+++||.++..+|++++|++.|++|+++     -|++   .+....|+.+..+
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~---~~a~~~lg~~~~~  385 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTF---ADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHH
Confidence            78999999999999999999999999875     3444   4555666665443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.7e-06  Score=67.32  Aligned_cols=89  Identities=11%  Similarity=0.059  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCc
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  431 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~  431 (456)
                      ...++|..+...|+|++|++++.++|.+        +|.....++++|.++..+|++++|++.+++|+++-... ...++
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~   76 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYR   76 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc-HHHHH
Confidence            3457999999999999999999999975        44556689999999999999999999999999987664 44566


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 012772          432 FMKELILKLEEAQAEASY  449 (456)
Q Consensus       432 ~~~~~~~~l~~~~~e~~~  449 (456)
                      ....++..++.+...+..
T Consensus        77 ~~a~~~~~lg~~~~~~~~   94 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEK   94 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            667777777777654443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.1e-05  Score=60.88  Aligned_cols=84  Identities=7%  Similarity=-0.065  Sum_probs=66.1

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  390 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~  390 (456)
                      ..+.+..+..+|+|.+|+..+++++++.... ...++....++.+|+.++..+|++++|+++++++|.+     -|+|+ 
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~~~-   80 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEHQ-   80 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcCCH-
Confidence            3455667788999999999999999876543 3345678899999999999999999999999999975     35665 


Q ss_pred             HHHHHHHHHHHHH
Q 012772          391 LGLQYYTCGKLEW  403 (456)
Q Consensus       391 ~~~~l~~La~~~~  403 (456)
                        ..+++|+.+..
T Consensus        81 --~a~~Nl~~~~~   91 (95)
T d1tjca_          81 --RANGNLKYFEY   91 (95)
T ss_dssp             --HHHHHHHHHHH
T ss_pred             --HHHHHHHHHHH
Confidence              46666666543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.15  E-value=5.2e-06  Score=68.84  Aligned_cols=96  Identities=11%  Similarity=0.078  Sum_probs=73.2

Q ss_pred             HHHHHHH--HHHHHHccCHHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          350 MQTREKL--IKILMELEDWKEALAYCQLTIPVYQRVYPQ----FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       350 ~~~~~~L--~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~----~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      +.++..+  +..+...|+|++|+..+++++.+.......    .++..+..++++|.+|..+|++++|+..+++|+.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4444445  667778899999999999999998865331    2456788999999999999999999999999999998


Q ss_pred             HhcC---CCCchHHHHHHHHHHHHH
Q 012772          424 ITHG---TNSPFMKELILKLEEAQA  445 (456)
Q Consensus       424 ~~~G---~~h~~~~~~~~~l~~~~~  445 (456)
                      ....   ..++....++.+++.+..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~  111 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALD  111 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHH
Confidence            7633   333445555566665543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.3e-06  Score=78.29  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=78.1

Q ss_pred             HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q 012772          313 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  392 (456)
Q Consensus       313 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~  392 (456)
                      +.|..+...|++++|++.++++++.     .|++   ..++..++.+|..+|++++|+.++++++..        +|..+
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~   67 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQ-----EPDN---TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLA   67 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            4456677789999999999998753     3555   456788999999999999999999999864        34556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          393 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       393 ~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ..++.||.++..+|++++|+..+.++.+.
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~   96 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRL   96 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccccccccccccc
Confidence            78999999999999999999999988774

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.8e-07  Score=77.35  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             ccccccCCCcCCCeeEE--e---CCEEEEEEecCCCCCCcccCCh
Q 012772          218 VISIINHSCLPNAVLVF--E---GRLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       218 ~~sl~NHSC~PN~~~~f--~---~~~~~vra~~~I~~Gee~~~~~  257 (456)
                      .+.++||||.||+....  .   +..+.++|+|+|++||||++++
T Consensus        98 ~~rfiNHsc~pN~~~~~~~~~~~~~~i~~~A~RdI~~GEEL~~dY  142 (171)
T d2f69a2          98 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY  142 (171)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECC
T ss_pred             cceeeEccCCCCceEEEEEecCCCeEEEEEEccCcCCCCEEEEEe
Confidence            45689999999997642  2   2468899999999999998553

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.1e-05  Score=74.43  Aligned_cols=95  Identities=12%  Similarity=-0.017  Sum_probs=79.6

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ++.+..+..+|++++|++.|+++++.     .|++   ..++..+|.++..+|++++|+.++.+++.+        +|..
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~   86 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQ-----DPKH---MEAWQYLGTTQAENEQELLAISALRRCLEL--------KPDN   86 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------cccc
Confidence            34566677899999999999998752     3444   667889999999999999999999999875        3444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                      ...++.+|.++..+|++++|.+.+++++.+.
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  117 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYT  117 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             ccccccccccccccccccccccchhhHHHhc
Confidence            5678999999999999999999999998753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=5.3e-05  Score=69.49  Aligned_cols=112  Identities=13%  Similarity=0.100  Sum_probs=99.1

Q ss_pred             HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          312 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       312 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      ...+..+...|++++|++.+++++.+...  .+..+..+.+...++.++...|++..|...+.+++.+.....++.++..
T Consensus        55 ~~lg~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~  132 (366)
T d1hz4a_          55 SVLGEVLHCKGELTRSLALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  132 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence            34455677889999999999999887654  3566778888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          392 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      +..+..+|.++...|++++|...+.+++.+....
T Consensus       133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_         133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999887654

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.98  E-value=1.5e-06  Score=78.83  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=31.2

Q ss_pred             cccccCCCcCCCeeE--EeC------CEEEEEEecCCCCCCcccCCh
Q 012772          219 ISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEGQFDD  257 (456)
Q Consensus       219 ~sl~NHSC~PN~~~~--f~~------~~~~vra~~~I~~Gee~~~~~  257 (456)
                      +-++||||.||+...  +.+      .++.+.|+|+|++||||||+|
T Consensus       213 aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DY  259 (269)
T d1mvha_         213 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDY  259 (269)
T ss_dssp             GGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECC
T ss_pred             eEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEec
Confidence            457899999999764  322      368899999999999999654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=9.7e-06  Score=72.27  Aligned_cols=69  Identities=12%  Similarity=-0.008  Sum_probs=60.4

Q ss_pred             CCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          345 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       345 ~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .++..+.++..+|.+|..+|+|++|++.++++|.+        +|.-+..++++|.++..+|++++|++.|++|+++
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence            34556788899999999999999999999999975        3344567999999999999999999999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=1.6e-05  Score=68.04  Aligned_cols=79  Identities=20%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  430 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h  430 (456)
                      ..+...|..+...|+|++|+.++.+++.+        .|..+..++++|.+|..+|++++|+..+++|+++     .|++
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-----~p~~   71 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQS   71 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-----CCCc
Confidence            34567899999999999999999999976        3556789999999999999999999999999865     3444


Q ss_pred             chHHHHHHHHHHHHH
Q 012772          431 PFMKELILKLEEAQA  445 (456)
Q Consensus       431 ~~~~~~~~~l~~~~~  445 (456)
                         ......|+.+..
T Consensus        72 ---~~a~~~lg~~~~   83 (201)
T d2c2la1          72 ---VKAHFFLGQCQL   83 (201)
T ss_dssp             ---HHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHH
Confidence               334455555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.76  E-value=6.9e-05  Score=58.02  Aligned_cols=79  Identities=11%  Similarity=0.011  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCch
Q 012772          353 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  432 (456)
Q Consensus       353 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~  432 (456)
                      ...+|..+...|++++|+..+++++..        +|.-...++.||.++..+|++++|+..|++|+++     .|+++ 
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-   84 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-   84 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc-----ccccc-
Confidence            456788999999999999999999864        3445688999999999999999999999999987     34444 


Q ss_pred             HHHHHHHHHHHHHHH
Q 012772          433 MKELILKLEEAQAEA  447 (456)
Q Consensus       433 ~~~~~~~l~~~~~e~  447 (456)
                        +....|+.+....
T Consensus        85 --~a~~~la~~y~~~   97 (112)
T d1hxia_          85 --AVHAALAVSHTNE   97 (112)
T ss_dssp             --HHHHHHHHHHHHH
T ss_pred             --cchHHHHHHHHHC
Confidence              4445555554433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.70  E-value=4.5e-05  Score=62.20  Aligned_cols=101  Identities=11%  Similarity=0.100  Sum_probs=65.1

Q ss_pred             CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHHHHHhcCCCChHH
Q 012772          322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL----------EDWKEALAYCQLTIPVYQRVYPQFHPLL  391 (456)
Q Consensus       322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~----------g~~~~A~~~~~~~l~~~e~~~g~~hp~~  391 (456)
                      +.|++|+..|++++++     .|+|+   .++.+++.++..+          +.+++|+.++++++.+        .|.-
T Consensus        11 ~~fe~A~~~~e~al~~-----~P~~~---~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--------~P~~   74 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKS-----NPLDA---DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DPKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred             ccHHHHHHHHHHHHhh-----CCcch---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------cchh
Confidence            4678888888888754     36664   5566778777654          4556777777777753        4555


Q ss_pred             HHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHh--cCCCCchHHHHHH
Q 012772          392 GLQYYTCGKLEWFLGD----TENAIKSMTEAVEILRIT--HGTNSPFMKELIL  438 (456)
Q Consensus       392 ~~~l~~La~~~~~~g~----~~eA~~~l~~Al~i~~~~--~G~~h~~~~~~~~  438 (456)
                      ...+++||.+|..+|+    ..++...+++|++.++..  .-|+++.+...+.
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~  127 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  127 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHH
Confidence            6678899999887653    344555555555555533  3466666654443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.9e-05  Score=61.12  Aligned_cols=63  Identities=14%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +.+...|..|...|+|++|+.++++++.+        +|.-...++++|.++..+|++++|+..+++|+++
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~   73 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL   73 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH
Confidence            34456788899999999999999999975        5667889999999999999999999999999987

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.0002  Score=66.15  Aligned_cols=87  Identities=13%  Similarity=0.096  Sum_probs=62.8

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      ..++++++|++.+++++++     -|.|   ..++.+.+.++..+| ++++|+.++.+++.+        +|.-...+++
T Consensus        54 ~~~e~~~~Al~~~~~ai~l-----nP~~---~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~  117 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIEL-----NAAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHH  117 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HhCCchHHHHHHHHHHHHH-----CCCC---hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHH
Confidence            4467788888888888764     2333   456677777777766 478888888877754        5556677777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +|.++..+|++++|++.+.+|+++
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~  141 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQ  141 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhh
Confidence            788888888888888888887765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.57  E-value=0.00017  Score=60.06  Aligned_cols=72  Identities=8%  Similarity=0.048  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~-------~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +..+...|..+...|+|.+|+.++.+++.+.+..++.       ..+.....+.++|.+|..+|++++|+..+++|+.+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            4556678899999999999999999999987655543       24556778889999999999999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00026  Score=59.05  Aligned_cols=72  Identities=14%  Similarity=0.038  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          350 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-------HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       350 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~-------hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +..+...|..+...|+|++|+..+++++.+.....+..       ++.....+.++|.+|..+|++++|+.++++|+.+
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            45556788999999999999999999998765444433       3455667888999999999999999999999987

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00022  Score=55.52  Aligned_cols=61  Identities=15%  Similarity=0.124  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          353 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       353 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +...|..+...|+|++|+.++.++|..        .|.-+..++++|.++..+|++++|+..+.+|+.+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh
Confidence            345788999999999999999999864        4556779999999999999999999999999976

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.39  E-value=0.00023  Score=59.19  Aligned_cols=87  Identities=13%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 012772          353 REKLIKILMELEDWKEALAYCQLTIPVYQRVYP--------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  424 (456)
Q Consensus       353 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g--------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~  424 (456)
                      ....+..+...|+|++|++.+.++|...+....        ..+|.....+.++|.++..+|++++|+..+.+|+++   
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---  106 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---  106 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh---
Confidence            345677888999999999999999987654332        236888899999999999999999999999999875   


Q ss_pred             hcCCCCchHHHHHHHHHHHHHHH
Q 012772          425 THGTNSPFMKELILKLEEAQAEA  447 (456)
Q Consensus       425 ~~G~~h~~~~~~~~~l~~~~~e~  447 (456)
                        -|+++   ..+..++.+...+
T Consensus       107 --~p~~~---~a~~~~g~~~~~l  124 (169)
T d1ihga1         107 --DPSNT---KALYRRAQGWQGL  124 (169)
T ss_dssp             --CTTCH---HHHHHHHHHHHHT
T ss_pred             --hhhhh---hHHHhHHHHHHHc
Confidence              34554   4445555554433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.35  E-value=0.00058  Score=55.75  Aligned_cols=89  Identities=11%  Similarity=-0.005  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH--------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~h--------p~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~  423 (456)
                      .+...|..+...|+|.+|+..+++++.++........        +.....+.++|.+|..+|++++|++.+++|+++  
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--   96 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--   96 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--
Confidence            3455677888999999999999999987654333322        223457789999999999999999999999875  


Q ss_pred             HhcCCCCchHHHHHHHHHHHHHHHH
Q 012772          424 ITHGTNSPFMKELILKLEEAQAEAS  448 (456)
Q Consensus       424 ~~~G~~h~~~~~~~~~l~~~~~e~~  448 (456)
                         .|++   ...+..++.+...+-
T Consensus        97 ---~p~~---~ka~~~~g~~~~~lg  115 (153)
T d2fbna1          97 ---DKNN---VKALYKLGVANMYFG  115 (153)
T ss_dssp             ---STTC---HHHHHHHHHHHHHHT
T ss_pred             ---cchh---hhhhHHhHHHHHHcC
Confidence               3333   445556665554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00016  Score=71.46  Aligned_cols=85  Identities=14%  Similarity=0.060  Sum_probs=61.8

Q ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012772          319 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  398 (456)
Q Consensus       319 ~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~L  398 (456)
                      ...|++++|+..+++++...          ..+++.+||.++...|+|++|+.++++++.+        .|..|..+++|
T Consensus       131 ~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~L  192 (497)
T d1ya0a1         131 NKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQL  192 (497)
T ss_dssp             ------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHH
Confidence            34566677766666554331          2356788999999999999999999999975        68889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Q 012772          399 GKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       399 a~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      |.++...|+..+|+.+|.||+.+
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhC
Confidence            99999999999999999999853

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00082  Score=61.85  Aligned_cols=87  Identities=9%  Similarity=-0.060  Sum_probs=64.4

Q ss_pred             hhcC-ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 012772          319 TSCG-NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  397 (456)
Q Consensus       319 ~~~g-~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~  397 (456)
                      ...| ++++|+..+++++++        ++.-..++.+++.++..+|++++|++++.+++.+        +|.-...+++
T Consensus        88 ~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~  151 (315)
T d2h6fa1          88 KSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQH  151 (315)
T ss_dssp             HHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHH
Confidence            3434 478888888777654        3334667778888888888888888888888754        4444567788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          398 CGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       398 La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      +|.++..+|++++|++.+.+|+++
T Consensus       152 ~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         152 RQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            888888888888888888888775

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.03  E-value=0.0021  Score=57.46  Aligned_cols=99  Identities=15%  Similarity=0.002  Sum_probs=71.6

Q ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---------------
Q 012772          316 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY---------------  380 (456)
Q Consensus       316 ~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~---------------  380 (456)
                      .....+|++++|+..++++++.        +|.-..++..|+.+|...|+|++|++.+++++.+.               
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3456789999999999988753        34446778899999999999999999998776541               


Q ss_pred             -----HHhc-C------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 012772          381 -----QRVY-P------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  422 (456)
Q Consensus       381 -----e~~~-g------~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~  422 (456)
                           +..+ +      ..+|.-...+...+.++...|++++|...+++|.+..
T Consensus        76 a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          76 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                 0111 1      1245545555666777777888888888888877654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.037  Score=42.58  Aligned_cols=80  Identities=15%  Similarity=-0.002  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 012772          350 MQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  425 (456)
Q Consensus       350 ~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~e~~~g~~hp~-~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~  425 (456)
                      .++..+.|..+..-   .++++++.++++++.        .+|. ....+|.||..|.++|+|++|+++++++++|    
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~--------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh--------cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc----
Confidence            67888888888754   566677777766543        2343 3578999999999999999999999999986    


Q ss_pred             cCCCCchHHHHHHHHHH
Q 012772          426 HGTNSPFMKELILKLEE  442 (456)
Q Consensus       426 ~G~~h~~~~~~~~~l~~  442 (456)
                       -|+|.....+...+.+
T Consensus       103 -eP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1         103 -ERNNKQVGALKSMVED  118 (124)
T ss_dssp             -CTTCHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHH
Confidence             6788877777666554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.08  E-value=0.026  Score=46.82  Aligned_cols=78  Identities=17%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-C
Q 012772          309 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-F  387 (456)
Q Consensus       309 ~~l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~-~  387 (456)
                      ......+..+...|++++|+..+++++.+     .|.+   -.++..++.++..+|++.+|++.|++....+..-+|- -
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~-----~P~~---e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFE-----HPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            44455667778899999999999999764     3444   5677889999999999999999999999998888884 3


Q ss_pred             ChHHHHH
Q 012772          388 HPLLGLQ  394 (456)
Q Consensus       388 hp~~~~~  394 (456)
                      .|.+...
T Consensus       140 ~~~l~~l  146 (179)
T d2ff4a2         140 GPTLRAL  146 (179)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5655333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0082  Score=46.57  Aligned_cols=81  Identities=10%  Similarity=0.035  Sum_probs=53.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-ch
Q 012772          354 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS-PF  432 (456)
Q Consensus       354 ~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h-~~  432 (456)
                      .+|+..+..+++|++|.+.|+++|.+     .|.+   ...++++|.++...++.++    +++|+.+++..+-.+. |.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~-----~p~~---~~~~~n~a~~L~~s~~~~d----~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA-----GSVS---KSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCC---HHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHhcchHH----HHHHHHHHHHHHhccCCch
Confidence            57888899999999999999999853     3444   4578999999987655543    2344444444443332 33


Q ss_pred             HHHHHHHHHHHHHH
Q 012772          433 MKELILKLEEAQAE  446 (456)
Q Consensus       433 ~~~~~~~l~~~~~e  446 (456)
                      ..+.+..|+.+..+
T Consensus        71 ~~~~~~~Lg~~y~~   84 (122)
T d1nzna_          71 QRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34566666666543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.14  Score=49.49  Aligned_cols=60  Identities=15%  Similarity=0.058  Sum_probs=49.6

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  378 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  378 (456)
                      +...+..+...|++++|+..|++++.+        +|....++++||.++...|++.+|+.++.++|.
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344455666789999999999999865        344467789999999999999999999999985

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.26  E-value=0.024  Score=51.55  Aligned_cols=84  Identities=11%  Similarity=0.048  Sum_probs=45.1

Q ss_pred             ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012772          323 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  400 (456)
Q Consensus       323 ~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g--~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~  400 (456)
                      ++++|+..+++++..     +|.+   ..+...++.++..++  ++++|+..+.+++..    .|.   ......+.+|.
T Consensus        88 ~~~~al~~~~~~l~~-----~pk~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~---~~~~~~~~~~~  152 (334)
T d1dcea1          88 LVKAELGFLESCLRV-----NPKS---YGTWHHRCWLLSRLPEPNWARELELCARFLEA----DER---NFHCWDYRRFV  152 (334)
T ss_dssp             HHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTT---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-----CCCc---HHHHHHhhHHHHHhccccHHHHHHHHHHHHhh----Cch---hhhhhhhHHHH
Confidence            344555555544432     2333   344455555555544  467777777776653    222   22223445666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHH
Q 012772          401 LEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       401 ~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      ++...|++++|++.+++++++
T Consensus       153 ~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         153 AAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTT
T ss_pred             HHHhccccHHHHHHHHHHHHc
Confidence            666677777777776666544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.09  E-value=0.041  Score=48.68  Aligned_cols=68  Identities=13%  Similarity=-0.005  Sum_probs=55.0

Q ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 012772          359 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  438 (456)
Q Consensus       359 ~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i~~~~~G~~h~~~~~~~~  438 (456)
                      -....|++++|+..++++++        .+|.-+.....||.++...|++++|++.|++++++     .|+++.....+.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~--------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-----~P~~~~~~~~l~   71 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLR   71 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcHHHHHHHH
Confidence            34567999999999999984        67888889999999999999999999999999875     345554444443


Q ss_pred             H
Q 012772          439 K  439 (456)
Q Consensus       439 ~  439 (456)
                      .
T Consensus        72 ~   72 (264)
T d1zbpa1          72 H   72 (264)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.17  E-value=0.083  Score=41.76  Aligned_cols=49  Identities=10%  Similarity=0.058  Sum_probs=32.8

Q ss_pred             CChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHH
Q 012772          322 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-----------WKEALAYCQLTIP  378 (456)
Q Consensus       322 g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~-----------~~~A~~~~~~~l~  378 (456)
                      +.+++|+..|++++++     .|++   ..++.++|.+|..+|+           |++|.+++++++.
T Consensus        55 ~~~~~Ai~~~~kAl~l-----~P~~---~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          55 QMIQEAITKFEEALLI-----DPKK---DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-----cchh---hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            4567788888877754     3444   5677889999987753           4556666666554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.61  E-value=0.13  Score=46.26  Aligned_cols=85  Identities=13%  Similarity=0.032  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 012772          324 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIK-------ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  396 (456)
Q Consensus       324 ~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~-------~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~  396 (456)
                      .++|++++++++.     ..|++......+..+..       .+...|++++|+.++++++.        .+|.-...++
T Consensus        45 ~~~al~~~~~~l~-----~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~--------~~pk~~~~~~  111 (334)
T d1dcea1          45 DESVLELTSQILG-----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--------VNPKSYGTWH  111 (334)
T ss_dssp             SHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--------HCTTCHHHHH
T ss_pred             cHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH--------hCCCcHHHHH
Confidence            4789999888875     34777654433333333       34445667777777777764        3566667778


Q ss_pred             HHHHHHHHcCC--HHHHHHHHHHHHHH
Q 012772          397 TCGKLEWFLGD--TENAIKSMTEAVEI  421 (456)
Q Consensus       397 ~La~~~~~~g~--~~eA~~~l~~Al~i  421 (456)
                      .+|.++..+++  +++|+..+.+|+++
T Consensus       112 ~~~~~~~~~~~~~~~~a~~~~~~al~~  138 (334)
T d1dcea1         112 HRCWLLSRLPEPNWARELELCARFLEA  138 (334)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhccccHHHHHHHHHHHHhh
Confidence            88888777654  78999999999887

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.57  E-value=0.16  Score=38.94  Aligned_cols=63  Identities=13%  Similarity=-0.052  Sum_probs=43.4

Q ss_pred             HHHHHHHhhhhcC---ChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 012772          310 ILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  379 (456)
Q Consensus       310 ~l~~~a~~~~~~g---~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  379 (456)
                      +-+.-|..+..+.   +.++++.+++.+++.     .|.  ...+.++.||..|.++|+|++|+.++.++|.+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~--~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----Cch--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            3355555554332   345666666655431     222  24578899999999999999999999999875

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=93.13  E-value=0.4  Score=40.55  Aligned_cols=64  Identities=9%  Similarity=-0.010  Sum_probs=55.1

Q ss_pred             ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhc
Q 012772          363 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRITH  426 (456)
Q Consensus       363 ~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~~~~  426 (456)
                      .|.-++|...|+++..+...-++|.||.+.....|.+..+.. +++.++|.++.++|.+.+....
T Consensus       136 ~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai  200 (220)
T d2o8pa1         136 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQI  200 (220)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            477889999999999999888999999999999999888776 6899999999999966555543

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.95  E-value=1.7  Score=36.87  Aligned_cols=55  Identities=11%  Similarity=0.057  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 012772          366 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVE  420 (456)
Q Consensus       366 ~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~  420 (456)
                      -++|.+.|++++.+...-+++.||.+.....+.+..+.. .|+.++|.++.++|.+
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            457889999999998888999999999999999988876 5888888888776664

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.033  Score=34.43  Aligned_cols=30  Identities=20%  Similarity=0.517  Sum_probs=25.7

Q ss_pred             ccCcCcCCCCCCccCcCCCCcccccHHhhhh
Q 012772           28 SRCDGCFASSNLKKCSACQVVWYCGSNCQKL   58 (456)
Q Consensus        28 ~~C~~C~~~~~~~~C~~C~~v~yCs~~C~~~   58 (456)
                      ..|.-|......++||.|.. +|||-.|-+.
T Consensus         8 ~lC~vC~~~~~KY~CP~C~~-~yCSL~CyK~   37 (46)
T d1x4sa1           8 GFCPAGEVQPARYTCPRCNA-PYCSLRCYRT   37 (46)
T ss_dssp             CSSCTTCCEEECEECTTTCC-EESSHHHHHH
T ss_pred             ccChhhhCccccccCCCCCC-ceechHHHhh
Confidence            46888888878899999988 7999999863

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.26  E-value=3  Score=35.12  Aligned_cols=58  Identities=12%  Similarity=0.027  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Q 012772          366 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       366 ~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~  423 (456)
                      -++|.+.|++++.+.+.-+++.||.+.....+.+..+.. .|+.++|.++.++|.+-..
T Consensus       142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai  200 (230)
T d2o02a1         142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI  200 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            357899999999999888999999999998888888776 6999999999888876443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.77  E-value=1.1  Score=39.50  Aligned_cols=51  Identities=10%  Similarity=-0.050  Sum_probs=33.0

Q ss_pred             ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 012772          363 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  421 (456)
Q Consensus       363 ~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al~i  421 (456)
                      .|+.+.|...+++++..        +|.....+...+.....+|++++|+.+|++|+..
T Consensus       182 ~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         182 SKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             SCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             ccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            45666666666666542        2233444556667777788888888888888653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=90.68  E-value=1  Score=34.20  Aligned_cols=81  Identities=16%  Similarity=0.096  Sum_probs=59.0

Q ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 012772          320 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  395 (456)
Q Consensus       320 ~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l  395 (456)
                      .+.++++|++.++++.+.       .|   ..+...|+.+|..    ..++++|+++++++.+.       .||   ...
T Consensus        35 ~~~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~   94 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL-------NS---GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------NDQ---DGC   94 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCH---HHH
T ss_pred             cccCHHHHHHHHhhhhcc-------cc---hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-------Ccc---hHH
Confidence            345778888887776431       22   3566778888875    45889999999988643       333   457


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHH
Q 012772          396 YTCGKLEWF----LGDTENAIKSMTEAVE  420 (456)
Q Consensus       396 ~~La~~~~~----~g~~~eA~~~l~~Al~  420 (456)
                      +.||.+|..    ..+.++|..+|++|.+
T Consensus        95 ~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          95 LILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            889999876    4578999999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.56  E-value=1.1  Score=39.49  Aligned_cols=61  Identities=8%  Similarity=-0.043  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 012772          352 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  419 (456)
Q Consensus       352 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~~g~~~eA~~~l~~Al  419 (456)
                      .....+..+..+|++++|...+.+++.    ..|.+ +.  ..+..++......|++++|+..|++|+
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~----~~~~~-~~--~~w~~~~~~~~~~~~~~~ar~i~~~al  161 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLA----IEDID-PT--LVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSC-TH--HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHH----HhcCC-hH--HHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            344556666677777777777666653    12222 21  223444455555566666666666654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=88.39  E-value=3.3  Score=34.90  Aligned_cols=89  Identities=11%  Similarity=0.019  Sum_probs=58.8

Q ss_pred             HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCC
Q 012772          311 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQ  386 (456)
Q Consensus       311 l~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~e~~~g~  386 (456)
                      ++..+..+..+|++++|++.|+++.+.     +  +   ..+...|+.+|..    ..++..|..+++.+..       .
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g--~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~-------~   67 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKACDL-----K--E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-------L   67 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT-----T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------T
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHC-----C--C---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc-------c
Confidence            344455666789999999999988542     2  2   4567889999887    5688889888777543       2


Q ss_pred             CChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 012772          387 FHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAV  419 (456)
Q Consensus       387 ~hp~~~~~l~~La~~~~~----~g~~~eA~~~l~~Al  419 (456)
                      .||.   ....||.++..    ..+.+.|...+++|.
T Consensus        68 ~~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~  101 (265)
T d1ouva_          68 NYSN---GCHLLGNLYYSGQGVSQNTNKALQYYSKAC  101 (265)
T ss_dssp             TCHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             cccc---hhhccccccccccccchhhHHHHHHHhhhh
Confidence            3442   23455555543    345666777666664

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=88.14  E-value=6.3  Score=32.79  Aligned_cols=58  Identities=19%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Q 012772          366 WKEALAYCQLTIPVYQRV--YPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILR  423 (456)
Q Consensus       366 ~~~A~~~~~~~l~~~e~~--~g~~hp~~~~~l~~La~~~~~-~g~~~eA~~~l~~Al~i~~  423 (456)
                      .++|.+.|++++.+.+..  ++|.||.+.....+.+..+.. +++.++|.++.++|.+-..
T Consensus       123 ~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~~  183 (223)
T d3efza1         123 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAE  183 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            356889999999988874  569999988888888888776 7999999999999987543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=87.35  E-value=0.92  Score=38.67  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 012772          351 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  420 (456)
Q Consensus       351 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~e~~~g~~hp~~~~~l~~La~~~~~----~g~~~eA~~~l~~Al~  420 (456)
                      +++.+|+..+...|++++|+++++++.+.       .+   +...+.||.+|..    ..++..|..+++++..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            46778999999999999999999998643       23   3468889999987    4577888888777654

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.26  E-value=2.1  Score=36.17  Aligned_cols=56  Identities=13%  Similarity=0.084  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHH
Q 012772          325 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVY  380 (456)
Q Consensus       325 ~~a~~~~~~~~~~~~~~l~p~h~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~  380 (456)
                      ++|.+.|+.+..+..+-+.|.||..+.+.-|.+..|.+ +|+-++|.++++++++-.
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~a  199 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEA  199 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            36677888888887778999999999988888876665 799999999999987643