Citrus Sinensis ID: 012808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MANTMQFSSIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHccccccccEEEcccccccccccEEEEEcccHHHHHHcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEccccccccccccccHHHHHHHHcccccccccEEEEccEEEEccccccEEEccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHccccEEEccccccccccEEEEcccccccccEEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEccccEEEEEEccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccEEEEEEcccccccEcEEEccccEEEEEEEEEcccEEEHHccccHcccccccccccEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEEEcccccccccccHHHHHHHHHHHccccccccEEEEEEEEEcccccccEEEEcccccHHHHHHHHHHHcccEEEEEEccccEEcccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHccccEEEEcccccccccEEEEcccccccccEEEEEEcccEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEccEEEEEEEEcHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MANTMQFSSIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSvrnscggrgglrvscegARIDVIErkksenlgvdeseKQLTCVMkfggsslaSAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVkarqydafdigfittddftnadileATYPAVAKRLhgdwitdlaipIVTGFLGKAWRTCAITtlgrggsdltaTTIGKALGLQEIQVWKDvdgvltcdpnihphakpvpyltfDEAAELAYFGAqvlhpqsmrparegdipvrvknsynpnapgtlirrsrDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEvslsltldpsklwSRELIQQASV
Flexible Loop (DISEMBL)
MANTMQFSSIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSvrnscggrgglrvscegaridvierkksenlgvdesekqltCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITtlgrggsdlTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGdipvrvknsynpnapgtlirrsrdmsKAVLTSivlkrnvtmLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSlsltldpsklwsreliqqasv
Low Complexity Region (SEG)
MANTMQFSSIIQKNSLHCQALSWQRFAFAKcvssssrlcvsvrnscGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASV
Disordered region (IsUnstruct)
*********IIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIE***************LTCVMKFGGSSLA*AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH***********************************SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW**********
Disordered Region (DISOPRED)
**************SL*C***************************CGGRGGLRVSCEGARID********************CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASV
Disordered Region (DISEMBL)
MANTMQFSSIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASV
Disordered Region (DISPRO)
*****QFSSIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERK***********KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANTMQFSSIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
O23653	544	Aspartokinase 2, chloropl	yes	no	0.953	0.799	0.765	0.0
Q9S702	559	Aspartokinase 3, chloropl	no	no	0.989	0.806	0.739	0.0
Q9LYU8	569	Aspartokinase 1, chloropl	no	no	0.877	0.702	0.804	0.0
Q57991	473	Probable aspartokinase OS	yes	no	0.767	0.739	0.378	2e-62
P08660	449	Lysine-sensitive aspartok	N/A	no	0.743	0.755	0.361	3e-43
O60163	519	Probable aspartokinase OS	yes	no	0.760	0.668	0.305	2e-40
P00561	820	Bifunctional aspartokinas	N/A	no	0.771	0.429	0.320	1e-38
O81852	916	Bifunctional aspartokinas	no	no	0.857	0.426	0.295	7e-37
P49079	920	Bifunctional aspartokinas	N/A	no	0.789	0.391	0.293	8e-37
Q9SA18	911	Bifunctional aspartokinas	no	no	0.769	0.385	0.303	9e-37

>sp|O23653|AK2_ARATH Aspartokinase 2, chloroplastic OS=Arabidopsis thaliana GN=AK2 PE=1 SV=2

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/443 (76%), Positives = 383/443 (86%), Gaps = 8/443 (1%)

Query: 20  ALSWQRFAFAK---CVS----SSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENL 72
           ALS +R  FA    C S    SSS +   V +SC   G LRVSCE  R+D+++RK+ E  
Sbjct: 15  ALSSKRLEFASKGACFSVTLPSSSAVFRDVEHSCRNIG-LRVSCEALRVDLLQRKEPETC 73

Query: 73  GVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGE 132
               + K+LTCVMKFGGSS+ SAERM+EVA LILSFP+ERPVIVLSAMGKTTNKLL AGE
Sbjct: 74  DSSGTGKELTCVMKFGGSSVESAERMKEVANLILSFPDERPVIVLSAMGKTTNKLLKAGE 133

Query: 133 KAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPR 192
           KAV+CGVTN+  I+ELSF+K+LH RT  ELG++ ++I  HLE L QLLKGI+M+KELT R
Sbjct: 134 KAVTCGVTNVESIEELSFIKELHLRTAHELGVETTVIEKHLEGLHQLLKGISMMKELTLR 193

Query: 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKR 252
           +RDYLVSFGECMSTR+F+AYLNKIG KARQYDAF+IGFITTDDFTNADILEATYPAV+K 
Sbjct: 194 TRDYLVSFGECMSTRLFSAYLNKIGHKARQYDAFEIGFITTDDFTNADILEATYPAVSKT 253

Query: 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
           L GDW  + A+P+VTG+LGK WR+CAITTLGRGGSDLTATTIGKALGL+EIQVWKDVDGV
Sbjct: 254 LVGDWSKENAVPVVTGYLGKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 313

Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
           LTCDPNI+P A+ VPYLTFDEAAELAYFGAQVLHP SMRPAR+GDIPVRVKNSYNP APG
Sbjct: 314 LTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPG 373

Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432
           T+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF+TFEDLGISVDVVATS
Sbjct: 374 TVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLAKVFTTFEDLGISVDVVATS 433

Query: 433 EVSLSLTLDPSKLWSRELIQQAS 455
           EVS+SLTLDP+KLW RELIQ+ +
Sbjct: 434 EVSISLTLDPAKLWGRELIQRVN 456

Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 4

>sp|Q9S702|AK3_ARATH Aspartokinase 3, chloroplastic OS=Arabidopsis thaliana GN=AK3 PE=1 SV=1

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/457 (73%), Positives = 390/457 (85%), Gaps = 6/457 (1%)

Query: 1   MANTMQFSSI----IQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSC 56
           MA +MQF  +    +  NS   +  S +   F+  VSS+     +V  SC     LRV+C
Sbjct: 1   MAASMQFYGVKTPELALNSKRIE-FSSKGLNFSALVSSARVFSRNVDRSCKNIA-LRVTC 58

Query: 57  EGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIV 116
           E  R++++ERK SE   ++++EK+LTCVMKFGGSS+ASAERM +VA+LILSFP+E+PV+V
Sbjct: 59  EAGRVELLERKASETFKLNKTEKKLTCVMKFGGSSVASAERMIQVAKLILSFPDEKPVVV 118

Query: 117 LSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEEL 176
           LSAM KTTNKLL+AGEKAV CGVTN+  I+ELS++K+LH RT  ELG++ ++IA HLE L
Sbjct: 119 LSAMAKTTNKLLMAGEKAVCCGVTNVDTIEELSYIKELHIRTAHELGVETAVIAEHLEGL 178

Query: 177 EQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236
           EQLLKG+AM+KELT RSRDYLVSFGECMSTR+FAAYLNKIG KARQYDAF+IG ITTDDF
Sbjct: 179 EQLLKGVAMMKELTLRSRDYLVSFGECMSTRLFAAYLNKIGHKARQYDAFEIGIITTDDF 238

Query: 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGK 296
           TNADILEATYPAV+K+L GDW  + A+P+VTGFLGK WR+CA+TTLGRGGSDLTATTIGK
Sbjct: 239 TNADILEATYPAVSKKLLGDWSKENALPVVTGFLGKGWRSCAVTTLGRGGSDLTATTIGK 298

Query: 297 ALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREG 356
           ALGL+EIQVWKDVDGVLTCDPNI+  A+PVP+LTFDEAAELAYFGAQVLHP SMRPAREG
Sbjct: 299 ALGLREIQVWKDVDGVLTCDPNIYCGAQPVPHLTFDEAAELAYFGAQVLHPLSMRPAREG 358

Query: 357 DIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVF 416
           +IPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF
Sbjct: 359 NIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGFLAKVF 418

Query: 417 STFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ 453
           STFE LGISVDVVATSEVS+SLTLDPSK  SRELIQ 
Sbjct: 419 STFEKLGISVDVVATSEVSISLTLDPSKFCSRELIQH 455

Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|Q9LYU8|AK1_ARATH Aspartokinase 1, chloroplastic OS=Arabidopsis thaliana GN=AK1 PE=1 SV=1

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/404 (80%), Positives = 362/404 (89%), Gaps = 4/404 (0%)

Query: 53  RVSCEGARI---DVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFP 109
           +VS  G+R     V+E KK+E +  +  EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP
Sbjct: 56  KVSGSGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFP 114

Query: 110 NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSII 169
            E PVIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I
Sbjct: 115 EESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVI 174

Query: 170 ATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229
            T+LEELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IG
Sbjct: 175 LTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIG 234

Query: 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDL 289
           FITTDDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDL
Sbjct: 235 FITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDL 294

Query: 290 TATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
           TATTIGKALGL+EIQVWKDVDGVLTCDP I+  A PVPYLTFDEAAELAYFGAQVLHPQS
Sbjct: 295 TATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQS 354

Query: 350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
           MRPAREG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ 
Sbjct: 355 MRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQV 414

Query: 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ 453
           GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ
Sbjct: 415 GFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQ 458

Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|Q57991|AK_METJA Probable aspartokinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0571 PE=1 SV=1

 Score =  240 bits (612), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 231/375 (61%), Gaps = 25/375 (6%)

Query: 81  LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCG 138
           +T VMKFGG+S+ S ER+R VA+++     E   +V+  SAM + TN L+   ++A+   
Sbjct: 1   MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD-- 58

Query: 139 VTNISCI-DELSFVKDLHHRTVDELGID--------RSIIATHLEELEQLLKGIAMLKEL 189
           V +I+ + D + F+++ H++ ++E  I         + II + +EELE++L G+A L EL
Sbjct: 59  VRDIAKVGDFIKFIREKHYKAIEE-AIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGEL 117

Query: 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYP 247
           TP+SRDY++SFGE +S+ I +  +  +G K+   +  + G IT ++F +A +  LE    
Sbjct: 118 TPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE---- 173

Query: 248 AVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307
            V +RL    + +  IP+VTGF+G       ITTLGRGGSD +A  IG  L    I++W 
Sbjct: 174 -VKERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230

Query: 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN 367
           DV GV T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E  IP+ VKN++ 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290

Query: 368 PNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
           P + GTLI    +MS +++ +I   +NV +++I    M+G  G  A++F    +  ++V 
Sbjct: 291 PESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVI 350

Query: 428 VVA--TSEVSLSLTL 440
           +++  +SE ++SL +
Sbjct: 351 LISQGSSETNISLVV 365

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|P08660|AK3_ECOLI Lysine-sensitive aspartokinase 3 OS=Escherichia coli (strain K12) GN=lysC PE=1 SV=2

 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 199/368 (54%), Gaps = 29/368 (7%)

Query: 83  CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
            V KFGG+S+A  + M   A+++LS  N R ++VLSA    TN L+     A++ G+   
Sbjct: 5   VVSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPG 58

Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYL 197
              ++L  ++++    ++ L     I     EE+E+LL+ I +L E      +P   D L
Sbjct: 59  ERFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDEL 114

Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD-----ILEATYPAVAKR 252
           VS GE MST +F   L +  V+A+ +D   +   T D F  A+     + E     +  R
Sbjct: 115 VSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPR 173

Query: 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
           L+   +      I  GF+G   +    TTLGRGGSD TA  + +AL    + +W DV G+
Sbjct: 174 LNEGLV------ITQGFIGSENKG-RTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGI 226

Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
            T DP +   AK +  + F EAAE+A FGA+VLHP ++ PA   DIPV V +S +P A G
Sbjct: 227 YTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGG 286

Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432
           TL+    + +  +  ++ L+RN T+L + S  ML   GFLA+VF       ISVD++ TS
Sbjct: 287 TLVCNKTE-NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS 345

Query: 433 EVSLSLTL 440
           EVS++LTL
Sbjct: 346 EVSVALTL 353

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|O60163|AK_SCHPO Probable aspartokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19F5.04 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 199/399 (49%), Gaps = 52/399 (13%)

Query: 83  CVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGK------TTNKLLLAGEKA 134
            V KFGG+S+     +   +VA+  LS   +R  +V SA         TT +L+ A E A
Sbjct: 16  VVQKFGGTSVGKFPIKIAVDVAKEYLS--TKRVALVCSARSTDTKAEGTTTRLIRATEAA 73

Query: 135 VSCGVTNISCI------DELSFVKDLHHRTVDELGI-DRSIIATHLE--ELEQLLKGIAM 185
           +   V ++  +      D +   +D     + ++GI D  I A H +  ELEQ L  I +
Sbjct: 74  LRPAVGSVHDLVRIIETDHVQAARDF----IQDVGIQDELIDAFHADCVELEQYLNAIRV 129

Query: 186 LKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEAT 245
           L E++PR+RD ++  GE +S R  AA L   G+ +   D   I     D+      L+A+
Sbjct: 130 LSEVSPRTRDLVIGMGERLSCRFMAAVLKDQGIDSEFIDMSHI----IDEQREWRNLDAS 185

Query: 246 YPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEI 303
           + A         +T +   +P+VTGF G       ++ +GRG +D  A  +   L   E+
Sbjct: 186 FYAYLASQLASKVTAVGNKVPVVTGFFGMV-PGGLLSQIGRGYTDFCAALLAVGLNADEL 244

Query: 304 QVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVK 363
           Q+WK+VDG+ T DP   P A+ +P +T +EAAEL Y+G++V+HP +M       IP+R+K
Sbjct: 245 QIWKEVDGIFTADPRKVPTARLLPLITPEEAAELTYYGSEVIHPFTMSQVVHARIPIRIK 304

Query: 364 NSYNPNAPGTLIRR----------------------SRDMSKAVLTSIVLKRNVTMLDIV 401
           N  NP   GT+I                        S  ++    T++ +K  + +++I 
Sbjct: 305 NVGNPRGKGTVIFPDTISRHGSATPPHPPKIMPDDISASLANKGATAVTIKDTIMVINIQ 364

Query: 402 STRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTL 440
           S R +  +GFLA +F+  +   ++VD++ TSEV +S+ L
Sbjct: 365 SNRKISAHGFLASIFAILDKYKLAVDLITTSEVHVSMAL 403

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 185/371 (49%), Gaps = 19/371 (5%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSC--GVT 140
           V+KFGG+S+A+AER   VA+++ S   +  V  VLSA  K TN L+   EK +S    + 
Sbjct: 3   VLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALP 62

Query: 141 NISCIDELSFVKDLHHRTVDELGID----RSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
           NIS  + + F + L      + G      ++ +     +++ +L GI++L +        
Sbjct: 63  NISDAERI-FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAA 121

Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--TNADILEATYPAVAKRLH 254
           L+  GE MS  I A  L   G      D  +   +    +  +  DI E+T    A R+ 
Sbjct: 122 LICRGEKMSIAIMAGVLEARGHNVTVIDPVE-KLLAVGHYLESTVDIAESTRRIAASRIP 180

Query: 255 GDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
            D +      ++ GF     +   +  LGR GSD +A  +   L     ++W DVDGV T
Sbjct: 181 ADHMV-----LMAGFTAGNEKG-ELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYT 234

Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
           CDP   P A+ +  +++ EA EL+YFGA+VLHP+++ P  +  IP  +KN+ NP APGTL
Sbjct: 235 CDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTL 294

Query: 375 IRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS 432
           I  SRD  +  +  I    N+ M  +    M G  G  A+VF+      ISV ++  ++S
Sbjct: 295 IGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSS 354

Query: 433 EVSLSLTLDPS 443
           E S+S  +  S
Sbjct: 355 EYSISFCVPQS 365

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1

 Score =  155 bits (391), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 219/426 (51%), Gaps = 35/426 (8%)

Query: 43  RNSCGGRGGLRVSCE------GARIDVIERKKSENLGVDE---SEKQLTCVMKFGGSSLA 93
           R + GG GGL + CE       A    +    + NL VD+    + ++  V KFGG+ + 
Sbjct: 43  RKTTGGGGGL-IRCELPDFHLSATATTVSGVSTVNL-VDQVQIPKGEMWSVHKFGGTCVG 100

Query: 94  SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153
           +++R+R VAE+I++  +ER ++V+SAM K T+ +     KA S    + S +  L  V +
Sbjct: 101 NSQRIRNVAEVIINDNSERKLVVVSAMSKVTDMMYDLIRKAQS---RDDSYLSALEAVLE 157

Query: 154 LHHRTVDEL--GIDRSIIATHLEE----LEQLLKGIAMLKELTPRSRDYLVSFGECMSTR 207
            H  T  +L  G D +   +HL      L+ +L+ I +    +    D++   GE  S +
Sbjct: 158 KHRLTARDLLDGDDLASFLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAGHGELWSAQ 217

Query: 208 IFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW--ITDLAIPI 265
           + +  + K G++ +  D  D+  +     T+++ ++  +    KRL   W  +    I I
Sbjct: 218 MLSYVVRKTGLECKWMDTRDVLIVNP---TSSNQVDPDFGESEKRLD-KWFSLNPSKIII 273

Query: 266 VTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP 325
            TGF+    +    TTL R GSD +A  +G  L  +++ +W DVDGV + DP     A  
Sbjct: 274 ATGFIASTPQNIP-TTLKRDGSDFSAAIMGALLRARQVTIWTDVDGVYSADPRKVNEAVI 332

Query: 326 VPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI-RRSRDMSKA 384
           +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N +APGT+I +   D    
Sbjct: 333 LQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNLSAPGTIICQPPEDDYDL 392

Query: 385 VLTSIVLK----RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSLSL 438
            LT+ V       N+ ++++  T M G  G  + +F   +D+G +V ++  A+SE S+  
Sbjct: 393 KLTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKDVGANVIMISQASSEHSVCF 452

Query: 439 TLDPSK 444
            + P K
Sbjct: 453 AV-PEK 457

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1

 Score =  155 bits (391), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/385 (29%), Positives = 196/385 (50%), Gaps = 25/385 (6%)

Query: 75  DESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKA 134
           D  +  +  V KFGG+ + ++ER+  VA+++L  P+ER ++V+SAM K T+ +     KA
Sbjct: 87  DLPKGDMWSVHKFGGTCMGTSERIHNVADIVLRDPSERKLVVVSAMSKVTDMMYNLVNKA 146

Query: 135 VSCGVTNISCIDELSFVKDLHHRTVDEL--GIDRSIIATHLE----ELEQLLKGIAMLKE 188
            S   + I+ +DE   V D H  T  +L  G D +   + L      L+ +L+ I +   
Sbjct: 147 QSRDDSYIAVLDE---VFDKHMTTAKDLLAGEDLARFLSQLHADISNLKAMLRAIYIAGH 203

Query: 189 LTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPA 248
            T    D++V  GE  S ++ +  + K G      D  ++  +     + A+ ++  Y  
Sbjct: 204 ATESFSDFVVGHGELWSAQMLSYAIQKSGTPCSWMDTREVLVVNP---SGANQVDPDYLE 260

Query: 249 VAKRLHGDWITDLAIP--IVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW 306
             KRL   W +       I TGF+         TTL R GSD +A  IG  +  +++ +W
Sbjct: 261 SEKRLE-KWFSRCPAETIIATGFIASTPENIP-TTLKRDGSDFSAAIIGSLVKARQVTIW 318

Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
            DVDGV + DP     A  +  L++ EA E++YFGA VLHP+++ P  + +IP+ ++N +
Sbjct: 319 TDVDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIF 378

Query: 367 NPNAPGTLI-----RRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFED 421
           N +APGT+I       + D+ +A + +      + ++++  T M G  G    +F   +D
Sbjct: 379 NTSAPGTMICQQPANENGDL-EACVKAFATIDKLALVNVEGTGMAGVPGTANAIFGAVKD 437

Query: 422 LGISVDVV--ATSEVSLSLTLDPSK 444
           +G +V ++  A+SE S+   + P K
Sbjct: 438 VGANVIMISQASSEHSVCFAV-PEK 461

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1

 Score =  154 bits (390), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 195/379 (51%), Gaps = 28/379 (7%)

Query: 83  CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
            V KFGG+ + ++ER+++VA +++   +ER ++V+SAM K T+ +     +A S    + 
Sbjct: 85  AVHKFGGTCVGNSERIKDVAAVVVKDDSERKLVVVSAMSKVTDMMYDLIHRAES---RDD 141

Query: 143 SCIDELSFVKDLHHRTV------DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
           S +  LS V + H  T       DEL    + +   +  L+ +L+ I +    T    D+
Sbjct: 142 SYLSALSGVLEKHRATAVDLLDGDELSSFLARLNDDINNLKAMLRAIYIAGHATESFSDF 201

Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI--TTDDFTNADILEATYPAVAKRLH 254
           +V  GE  S ++ AA + K G+     DA D+  +  T+ +  + D +E+      KRL 
Sbjct: 202 VVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVESE-----KRLE 256

Query: 255 GDWITD--LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
             W T     I I TGF+    +    TTL R GSD +A  +       ++ +W DVDGV
Sbjct: 257 -KWFTQNSAKIIIATGFIASTPQNIP-TTLKRDGSDFSAAIMSALFRSHQLTIWTDVDGV 314

Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
            + DP     A  +  L++ EA E++YFGA VLHP+++ P  + DIP+ ++N +N +APG
Sbjct: 315 YSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNLSAPG 374

Query: 373 TLIRRSRDMSKAVLTSIVLK-----RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
           T+I R  D          +K      N+ ++++  T M G  G  + +FS  +++G +V 
Sbjct: 375 TMICRQIDDEDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKEVGANVI 434

Query: 428 VV--ATSEVSLSLTLDPSK 444
           ++  A+SE S+   + P K
Sbjct: 435 MISQASSEHSVCFAV-PEK 452

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
255543571	556	aspartate kinase, putative [Ricinus comm	0.969	0.794	0.830	0.0
225451597	567	PREDICTED: aspartokinase 3, chloroplasti	0.973	0.783	0.815	0.0
224065286	486	predicted protein [Populus trichocarpa]	0.875	0.820	0.873	0.0
224131436	487	predicted protein [Populus trichocarpa]	0.877	0.821	0.866	0.0
351726461	564	precursor monofunctional aspartokinase [	0.912	0.737	0.820	0.0
356559490	567	PREDICTED: aspartokinase 1, chloroplasti	0.912	0.733	0.825	0.0
296082278	479	unnamed protein product [Vitis vinifera]	0.813	0.774	0.894	0.0
359473780	575	PREDICTED: aspartokinase 1, chloroplasti	0.949	0.753	0.794	0.0
356570251	562	PREDICTED: aspartokinase 1, chloroplasti	0.973	0.790	0.750	0.0
15241295	544	aspartokinase 2 [Arabidopsis thaliana] g	0.953	0.799	0.765	0.0

>gi|255543571|ref|XP_002512848.1| aspartate kinase, putative [Ricinus communis] gi|223547859|gb|EEF49351.1| aspartate kinase, putative [Ricinus communis]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/449 (83%), Positives = 403/449 (89%), Gaps = 7/449 (1%)

Query: 10  IIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVR-NSCGGRGGLRVSCEGARIDVIERKK 68
           +  K +L CQA     FA +  V SS  L  SV+ +SC  R  LRVSCEG  IDV+ER K
Sbjct: 17  VFPKKALQCQAFG---FANSVAVPSSKGLFKSVKFSSCTSRV-LRVSCEGRNIDVLERNK 72

Query: 69  SENL--GVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK 126
           SE+   G  ESEKQ TCVMKFGGSSLASAERMREVA+LILSF +E P+IVLSAMGKTTNK
Sbjct: 73  SESSIDGNVESEKQFTCVMKFGGSSLASAERMREVADLILSFADETPIIVLSAMGKTTNK 132

Query: 127 LLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAML 186
           LLLAGEKAV CGVTN++ IDELSF+K+LH RTV+EL +D+S++ATHLEELEQLL GIAM+
Sbjct: 133 LLLAGEKAVCCGVTNVNAIDELSFIKELHLRTVEELKVDKSVVATHLEELEQLLNGIAMM 192

Query: 187 KELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATY 246
           KELTPR+RDYLVSFGECMSTRIFAAYLNKIG KARQYDAFD+G ITTDDFTNADILEATY
Sbjct: 193 KELTPRTRDYLVSFGECMSTRIFAAYLNKIGAKARQYDAFDMGIITTDDFTNADILEATY 252

Query: 247 PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW 306
           PAVAKRLHGDWI+D AIPIVTGFLGK WR+CAITTLGRGGSDLTATTIGKALGL+EIQVW
Sbjct: 253 PAVAKRLHGDWISDPAIPIVTGFLGKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVW 312

Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
           KDVDGVLTCDPNI+  A+PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY
Sbjct: 313 KDVDGVLTCDPNIYQRAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 372

Query: 367 NPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISV 426
           NPNAPGTLI R+RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FEDLGISV
Sbjct: 373 NPNAPGTLITRARDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISV 432

Query: 427 DVVATSEVSLSLTLDPSKLWSRELIQQAS 455
           DVVATSEVS+SLTLDPSKLWSRELIQQAS
Sbjct: 433 DVVATSEVSISLTLDPSKLWSRELIQQAS 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451597|ref|XP_002275779.1| PREDICTED: aspartokinase 3, chloroplastic-like [Vitis vinifera]

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/445 (81%), Positives = 398/445 (89%), Gaps = 1/445 (0%)

Query: 9   SIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKK 68
           ++  + SLHCQ L  QR  F   V+  SRLC SV++S   +  LRV C G  IDV+E+ K
Sbjct: 16  AVSSRRSLHCQPLWSQRVDFTLSVAGGSRLCRSVKDS-SRKNVLRVCCSGGSIDVLEKSK 74

Query: 69  SENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLL 128
           +EN   D   +QLT  MKFGGSS+ASAERMREVA+LILSFPNERPVIVLSAMGKTTNKLL
Sbjct: 75  TENQTTDGVTEQLTIAMKFGGSSVASAERMREVADLILSFPNERPVIVLSAMGKTTNKLL 134

Query: 129 LAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE 188
           LAGEKAVSCGV+N SCIDEL+F+K+LH RT DELG+D S+I+ HLEELEQLLKGIAM+KE
Sbjct: 135 LAGEKAVSCGVSNASCIDELTFIKELHLRTADELGVDSSVISAHLEELEQLLKGIAMMKE 194

Query: 189 LTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPA 248
           LT R++DYLVSFGECMSTR+FAAY+NKIG KARQYDAFDIGFITTDDFTNADILEATYPA
Sbjct: 195 LTLRTKDYLVSFGECMSTRLFAAYMNKIGAKARQYDAFDIGFITTDDFTNADILEATYPA 254

Query: 249 VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308
           VAKRL GDWI+D AIPIVTGFLGK WR+CA+TTLGRGGSDLTATT+GKALGL+EIQVWKD
Sbjct: 255 VAKRLLGDWISDPAIPIVTGFLGKGWRSCAVTTLGRGGSDLTATTLGKALGLREIQVWKD 314

Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
           VDGVLTCDPNI+ HAKPV YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN 
Sbjct: 315 VDGVLTCDPNIYSHAKPVEYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNR 374

Query: 369 NAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428
           NAPGTLI R+RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FE+LGISVDV
Sbjct: 375 NAPGTLITRTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDV 434

Query: 429 VATSEVSLSLTLDPSKLWSRELIQQ 453
           VATSEVS+SLTLDPSKLWSRELIQQ
Sbjct: 435 VATSEVSISLTLDPSKLWSRELIQQ 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065286|ref|XP_002301756.1| predicted protein [Populus trichocarpa] gi|222843482|gb|EEE81029.1| predicted protein [Populus trichocarpa]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/403 (87%), Positives = 379/403 (94%), Gaps = 4/403 (0%)

Query: 53  RVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNER 112
           +VSCE A +D++E  K +N    E+EK++TCVMKFGGSS+ASAERMREVAELILSFPNE 
Sbjct: 1   KVSCEAASVDLLETNKIDN----EAEKKITCVMKFGGSSVASAERMREVAELILSFPNES 56

Query: 113 PVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATH 172
           PVIVLSAMGKTTNKLLLAGEKAVSCGVTN+  I+ELSF+K+LH+RTV EL +D S+IA H
Sbjct: 57  PVIVLSAMGKTTNKLLLAGEKAVSCGVTNVDSIEELSFIKELHNRTVKELEVDESVIAKH 116

Query: 173 LEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232
           LEELEQLLKGIAM+KELTPR+RDYLVSFGECMSTRIFAAY+NKIG KARQYDAF+IGFIT
Sbjct: 117 LEELEQLLKGIAMMKELTPRTRDYLVSFGECMSTRIFAAYMNKIGAKARQYDAFEIGFIT 176

Query: 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTAT 292
           TDDFTNADILEATYPAVAK LHGDWI+D AIPIVTGFLGK WR+CAITTLGRGGSDLTAT
Sbjct: 177 TDDFTNADILEATYPAVAKSLHGDWISDPAIPIVTGFLGKGWRSCAITTLGRGGSDLTAT 236

Query: 293 TIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRP 352
           TIGKALGL EIQVWKDVDGVLTCDPNI+PHA+PVPYLTFDEAAELAYFGAQVLHPQSMRP
Sbjct: 237 TIGKALGLSEIQVWKDVDGVLTCDPNIYPHAEPVPYLTFDEAAELAYFGAQVLHPQSMRP 296

Query: 353 AREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412
           ARE DIPVRVKNSYNPNAPGTLI R+RDMSKAVLTSIVLKRNVTMLDI STRMLGQ+GFL
Sbjct: 297 AREADIPVRVKNSYNPNAPGTLITRARDMSKAVLTSIVLKRNVTMLDIASTRMLGQFGFL 356

Query: 413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS 455
           AKVFSTFEDLGISVDVVATSEVS+SLTLDPSKLWSRELIQQAS
Sbjct: 357 AKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQAS 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131436|ref|XP_002321084.1| predicted protein [Populus trichocarpa] gi|222861857|gb|EEE99399.1| predicted protein [Populus trichocarpa]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/404 (86%), Positives = 376/404 (93%), Gaps = 4/404 (0%)

Query: 52  LRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNE 111
           L+VSCE A +DV+E  K++N    ++E QLTCVMKFGGSSLASAERMREVAELILSF NE
Sbjct: 1   LKVSCEAASVDVLEMNKTDN----QAETQLTCVMKFGGSSLASAERMREVAELILSFRNE 56

Query: 112 RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIAT 171
           RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN+  I+ELS +K+LH  T  ELG+D S+IA 
Sbjct: 57  RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNVESIEELSIIKELHLLTAKELGVDESVIAK 116

Query: 172 HLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231
           HLEELEQLLKGIAM+KELTPR++DYLVSFGECMSTRIFAAY+NKIG KARQYDAF IGFI
Sbjct: 117 HLEELEQLLKGIAMMKELTPRTKDYLVSFGECMSTRIFAAYMNKIGAKARQYDAFKIGFI 176

Query: 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
           TTDDFTNADILEATYPAVA+ LHGDWI D AIPIVTGFLGK WR+CAITTLGRGGSDLTA
Sbjct: 177 TTDDFTNADILEATYPAVAQSLHGDWIRDTAIPIVTGFLGKGWRSCAITTLGRGGSDLTA 236

Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMR 351
           TTIGKALGL+EIQVWKDVDGVLTCDPNI+PHA+PVPYLTFDEAAELAYFGAQVLHPQSMR
Sbjct: 237 TTIGKALGLREIQVWKDVDGVLTCDPNIYPHAEPVPYLTFDEAAELAYFGAQVLHPQSMR 296

Query: 352 PAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGF 411
           PAREGDIPVRVKNSYN NAPGTLI R+RDMSKAVLTSIV+KRNVTMLDIVSTRMLGQ+GF
Sbjct: 297 PAREGDIPVRVKNSYNSNAPGTLITRTRDMSKAVLTSIVMKRNVTMLDIVSTRMLGQFGF 356

Query: 412 LAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS 455
           LAKVFS FEDLGISVDVVATSEVS+SLTLDPSKLWSRELIQQAS
Sbjct: 357 LAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQAS 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726461|ref|NP_001238151.1| precursor monofunctional aspartokinase [Glycine max] gi|5305740|gb|AAD41796.1| precursor monofunctional aspartokinase [Glycine max]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/418 (82%), Positives = 375/418 (89%), Gaps = 2/418 (0%)

Query: 40  VSVRNSCGGRGGLRVS-CEGARIDVIERKKSENLGVD-ESEKQLTCVMKFGGSSLASAER 97
           V  R   G R    V+ C+ +  DVIE+  +EN  V  E E   TCVMKFGGSS+ASA+R
Sbjct: 41  VCARRVWGNRVAFSVTTCKASTSDVIEKNATENGMVSSEGETSFTCVMKFGGSSVASADR 100

Query: 98  MREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157
           M+EVA LILSFP ERP++VLSAMGKTTNKLLLAGEKAVSCGV N+S I+EL F+KDLH R
Sbjct: 101 MKEVATLILSFPEERPIVVLSAMGKTTNKLLLAGEKAVSCGVINVSSIEELCFIKDLHLR 160

Query: 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIG 217
           TVD+LG+D S+I+ HLEELEQLLKGIAM+KELT R++DYLVSFGECMSTRIFAAYLNKIG
Sbjct: 161 TVDQLGVDGSVISKHLEELEQLLKGIAMMKELTKRTQDYLVSFGECMSTRIFAAYLNKIG 220

Query: 218 VKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC 277
           VKARQYDAF+IGFITTDDFTNADILEATYPAVAKRLHGDW++D AI IVTGFLGKA ++C
Sbjct: 221 VKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHGDWLSDPAIAIVTGFLGKARKSC 280

Query: 278 AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL 337
           A+TTLGRGGSDLTATTIGKALGL EIQVWKDVDGVLTCDPNI+P A+PVPYLTFDEAAEL
Sbjct: 281 AVTTLGRGGSDLTATTIGKALGLPEIQVWKDVDGVLTCDPNIYPKAEPVPYLTFDEAAEL 340

Query: 338 AYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397
           AYFGAQVLHPQSMRPARE DIPVRVKNSYNP APGTLI ++RDMSKAVLTSIVLKRNVTM
Sbjct: 341 AYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLITKARDMSKAVLTSIVLKRNVTM 400

Query: 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS 455
           LDI STRMLGQYGFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQAS
Sbjct: 401 LDIASTRMLGQYGFLAKVFSIFEELGISVDVVATSEVSVSLTLDPSKLWSRELIQQAS 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559490|ref|XP_003548032.1| PREDICTED: aspartokinase 1, chloroplastic-like [Glycine max]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/419 (82%), Positives = 376/419 (89%), Gaps = 3/419 (0%)

Query: 40  VSVRNSCGGRGGLRVS-CEGARI-DVIERKKSENLGVD-ESEKQLTCVMKFGGSSLASAE 96
           V  R   G R    V+ C+ +   DVIE+  +EN  V  E E   TCVMKFGGSS+ASAE
Sbjct: 39  VCARRVWGNRVAFNVTTCKASTTSDVIEKSVTENRVVSIEGETSFTCVMKFGGSSVASAE 98

Query: 97  RMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156
           RM+EVA LILSFP ERP++VLSAMGKTTNKLLLAGEKAVSCGVTN+S I+EL F+KDLH 
Sbjct: 99  RMKEVATLILSFPEERPIVVLSAMGKTTNKLLLAGEKAVSCGVTNVSSIEELCFIKDLHL 158

Query: 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKI 216
           RTVD+LG+D S+IA HLEELEQLLKGIAM+KELT R++DYLVSFGECMSTRIFAAYLNKI
Sbjct: 159 RTVDQLGVDGSVIAKHLEELEQLLKGIAMMKELTKRTQDYLVSFGECMSTRIFAAYLNKI 218

Query: 217 GVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT 276
           GVKARQYDAF+IGFITTDDFTNADILEATYPAVAKRLHGDW++D AI IVTGFLGKA ++
Sbjct: 219 GVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHGDWLSDPAIAIVTGFLGKAQKS 278

Query: 277 CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAE 336
           CA+TTLGRGGSDLTAT IGKALGL EIQVWKDVDGVLTCDPNI+P A+PVPYLTFDEAAE
Sbjct: 279 CAVTTLGRGGSDLTATAIGKALGLPEIQVWKDVDGVLTCDPNIYPKAEPVPYLTFDEAAE 338

Query: 337 LAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVT 396
           LAYFGAQVLHPQSMRPARE DIPVRVKNSYNP APGTLI ++RDMSKAVLTSIVLKRNVT
Sbjct: 339 LAYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLITKARDMSKAVLTSIVLKRNVT 398

Query: 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS 455
           MLDIVSTRMLGQYGFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQAS
Sbjct: 399 MLDIVSTRMLGQYGFLAKVFSIFEELGISVDVVATSEVSVSLTLDPSKLWSRELIQQAS 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082278|emb|CBI21283.3| unnamed protein product [Vitis vinifera]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/371 (89%), Positives = 356/371 (95%)

Query: 85  MKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISC 144
           MKFGGSS+ASAERMREVA+LILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGV+N SC
Sbjct: 1   MKFGGSSVASAERMREVADLILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVSNASC 60

Query: 145 IDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECM 204
           IDEL+F+K+LH RT DELG+D S+I+ HLEELEQLLKGIAM+KELT R++DYLVSFGECM
Sbjct: 61  IDELTFIKELHLRTADELGVDSSVISAHLEELEQLLKGIAMMKELTLRTKDYLVSFGECM 120

Query: 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIP 264
           STR+FAAY+NKIG KARQYDAFDIGFITTDDFTNADILEATYPAVAKRL GDWI+D AIP
Sbjct: 121 STRLFAAYMNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLLGDWISDPAIP 180

Query: 265 IVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAK 324
           IVTGFLGK WR+CA+TTLGRGGSDLTATT+GKALGL+EIQVWKDVDGVLTCDPNI+ HAK
Sbjct: 181 IVTGFLGKGWRSCAVTTLGRGGSDLTATTLGKALGLREIQVWKDVDGVLTCDPNIYSHAK 240

Query: 325 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA 384
           PV YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN NAPGTLI R+RDMSKA
Sbjct: 241 PVEYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNRNAPGTLITRTRDMSKA 300

Query: 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444
           VLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSK
Sbjct: 301 VLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSK 360

Query: 445 LWSRELIQQAS 455
           LWSRELIQQAS
Sbjct: 361 LWSRELIQQAS 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473780|ref|XP_002267220.2| PREDICTED: aspartokinase 1, chloroplastic-like [Vitis vinifera]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/434 (79%), Positives = 377/434 (86%), Gaps = 1/434 (0%)

Query: 22  SWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQL 81
           S  R  F+    SSS L  +  + C  R  LRV C+     V+  + SEN   D++ ++L
Sbjct: 30  SSNRIEFSASAISSSGLFAAFGDGCRRRV-LRVGCKKGVEAVLREEASENESSDDNVEKL 88

Query: 82  TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
            CVMKFGGSSLASAERMREVA+L+L F +ERPVIVLSAMGKTTN LLLAGEKAVSCGV+N
Sbjct: 89  ACVMKFGGSSLASAERMREVADLVLQFRDERPVIVLSAMGKTTNNLLLAGEKAVSCGVSN 148

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
            S IDELS VK+LH RTV ELG+D S+I+ HLEELEQLLKGIAM+KELT R+ DYLVSFG
Sbjct: 149 ASEIDELSLVKELHLRTVQELGLDSSVISGHLEELEQLLKGIAMMKELTFRTTDYLVSFG 208

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
           ECMSTRIFAAYLNKIG KARQYDAFDIGFITTDDFTNADILEATYPAVAKRL+ DWI D 
Sbjct: 209 ECMSTRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLYNDWINDP 268

Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
           AIPIVTGFLGK W++ A+TTLGRGGSDLTAT IG+ALGLQEIQVWKDVDGVLTCDP+I+P
Sbjct: 269 AIPIVTGFLGKGWKSGAVTTLGRGGSDLTATAIGRALGLQEIQVWKDVDGVLTCDPSIYP 328

Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM 381
            A PVPYLTFDEAAELAYFGAQVLHPQ+MRPARE DIPVRVKNSYNP APGTLI ++RDM
Sbjct: 329 RALPVPYLTFDEAAELAYFGAQVLHPQAMRPARESDIPVRVKNSYNPEAPGTLINKTRDM 388

Query: 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLD 441
           SKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FEDLGISVDVVATSEVS+SLTLD
Sbjct: 389 SKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLD 448

Query: 442 PSKLWSRELIQQAS 455
           PSKLWSRELIQQAS
Sbjct: 449 PSKLWSRELIQQAS 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570251|ref|XP_003553303.1| PREDICTED: aspartokinase 1, chloroplastic-like [Glycine max]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/465 (75%), Positives = 386/465 (83%), Gaps = 21/465 (4%)

Query: 1   MANTMQFS---------SIIQKNSLHCQALSW--QRFAFAKCVSSSSRLCVSVRNSCGGR 49
           MA+TMQ S         ++ ++    CQ   W   R  F   V    R+      S    
Sbjct: 1   MASTMQLSWVSKSTVPVALSRRVCCQCQPPLWLPWRIGFVTPVPLVRRV------SSERV 54

Query: 50  GGLRVSC-EGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSF 108
             LRVSC +    DV+E    E+ G  E+E   TCVMKFGGSS+A+AERMREVA LILSF
Sbjct: 55  AALRVSCSKETESDVVE---GESGGFAETEMSYTCVMKFGGSSVANAERMREVANLILSF 111

Query: 109 PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSI 168
           P ERP+IVLSAMGKTTN LLLAGEKAVSCGVTN   IDEL+ +KDLH RTV++LG+DR++
Sbjct: 112 PEERPIIVLSAMGKTTNMLLLAGEKAVSCGVTNADSIDELNIIKDLHLRTVEQLGVDRNV 171

Query: 169 IATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228
           I  HLEELEQLLKGIAM+KELTPR++DYLVSFGECMSTRIFAAYLN +GVKARQYDAF++
Sbjct: 172 IEKHLEELEQLLKGIAMMKELTPRTQDYLVSFGECMSTRIFAAYLNTLGVKARQYDAFEM 231

Query: 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSD 288
           G ITTDDFTNADILEATYPAVAKRLH DW++D AIPIVTGFLGKA ++CA+TTLGRGGSD
Sbjct: 232 GIITTDDFTNADILEATYPAVAKRLHSDWVSDPAIPIVTGFLGKARKSCAVTTLGRGGSD 291

Query: 289 LTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ 348
           LTATTIGKALGL EIQVWKDVDGVLTCDPNI P AKPVPYLTFDEAAELAYFGAQVLHPQ
Sbjct: 292 LTATTIGKALGLPEIQVWKDVDGVLTCDPNICPQAKPVPYLTFDEAAELAYFGAQVLHPQ 351

Query: 349 SMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ 408
           SMRPARE DIPVRVKNSYNP APGTLI ++RDMSKA+LTSIVLKRNVTMLDIVSTRMLGQ
Sbjct: 352 SMRPARESDIPVRVKNSYNPKAPGTLIAKTRDMSKALLTSIVLKRNVTMLDIVSTRMLGQ 411

Query: 409 YGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ 453
           +GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ
Sbjct: 412 FGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQ 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241295|ref|NP_196910.1| aspartokinase 2 [Arabidopsis thaliana] gi|145334399|ref|NP_001078581.1| aspartokinase 2 [Arabidopsis thaliana] gi|114149225|sp|O23653.2|AK2_ARATH RecName: Full=Aspartokinase 2, chloroplastic; AltName: Full=Aspartate kinase 2; Flags: Precursor gi|9757787|dbj|BAB08285.1| lysine-sensitive aspartate kinase [Arabidopsis thaliana] gi|332004599|gb|AED91982.1| aspartokinase 2 [Arabidopsis thaliana] gi|332004600|gb|AED91983.1| aspartokinase 2 [Arabidopsis thaliana]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/443 (76%), Positives = 383/443 (86%), Gaps = 8/443 (1%)

Query: 20  ALSWQRFAFAK---CVS----SSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENL 72
           ALS +R  FA    C S    SSS +   V +SC   G LRVSCE  R+D+++RK+ E  
Sbjct: 15  ALSSKRLEFASKGACFSVTLPSSSAVFRDVEHSCRNIG-LRVSCEALRVDLLQRKEPETC 73

Query: 73  GVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGE 132
               + K+LTCVMKFGGSS+ SAERM+EVA LILSFP+ERPVIVLSAMGKTTNKLL AGE
Sbjct: 74  DSSGTGKELTCVMKFGGSSVESAERMKEVANLILSFPDERPVIVLSAMGKTTNKLLKAGE 133

Query: 133 KAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPR 192
           KAV+CGVTN+  I+ELSF+K+LH RT  ELG++ ++I  HLE L QLLKGI+M+KELT R
Sbjct: 134 KAVTCGVTNVESIEELSFIKELHLRTAHELGVETTVIEKHLEGLHQLLKGISMMKELTLR 193

Query: 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKR 252
           +RDYLVSFGECMSTR+F+AYLNKIG KARQYDAF+IGFITTDDFTNADILEATYPAV+K 
Sbjct: 194 TRDYLVSFGECMSTRLFSAYLNKIGHKARQYDAFEIGFITTDDFTNADILEATYPAVSKT 253

Query: 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
           L GDW  + A+P+VTG+LGK WR+CAITTLGRGGSDLTATTIGKALGL+EIQVWKDVDGV
Sbjct: 254 LVGDWSKENAVPVVTGYLGKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 313

Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
           LTCDPNI+P A+ VPYLTFDEAAELAYFGAQVLHP SMRPAR+GDIPVRVKNSYNP APG
Sbjct: 314 LTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPG 373

Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432
           T+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF+TFEDLGISVDVVATS
Sbjct: 374 TVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLAKVFTTFEDLGISVDVVATS 433

Query: 433 EVSLSLTLDPSKLWSRELIQQAS 455
           EVS+SLTLDP+KLW RELIQ+ +
Sbjct: 434 EVSISLTLDPAKLWGRELIQRVN 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2174708	544	CARAB-AK-LYS [Arabidopsis thal	0.888	0.744	0.802	9.9e-174
TAIR|locus:2078638	559	AK3 "aspartate kinase 3" [Arab	0.879	0.717	0.805	3.8e-172
TAIR|locus:2183896	569	AK-LYS1 "aspartate kinase 1" [	0.877	0.702	0.804	2e-168
UNIPROTKB|P08660	449	lysC "LysC" [Escherichia coli	0.75	0.761	0.369	2e-47
TIGR_CMR|SO_3986	451	SO_3986 "aspartokinase III, ly	0.754	0.762	0.351	3.8e-46
UNIPROTKB|Q9KUW8	479	VC_0391 "Aspartokinase" [Vibri	0.754	0.718	0.343	1.5e-44
TIGR_CMR|VC_0391	479	VC_0391 "aspartokinase III, ly	0.754	0.718	0.343	1.5e-44
POMBASE|SPBC19F5.04	519	SPBC19F5.04 "aspartate kinase	0.649	0.570	0.330	1.6e-43
TIGR_CMR|CPS_2004	456	CPS_2004 "aspartokinase III, l	0.811	0.811	0.319	2.8e-43
UNIPROTKB|P0A4Z8	421	ask "Aspartokinase" [Mycobacte	0.506	0.548	0.351	1.9e-39

TAIR|locus:2174708 CARAB-AK-LYS [Arabidopsis thaliana (taxid:3702)]

 Score = 1688 (599.3 bits), Expect = 9.9e-174, P = 9.9e-174
 Identities = 325/405 (80%), Positives = 366/405 (90%)

Query:    51 GLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPN 110
             GLRVSCE  R+D+++RK+ E      + K+LTCVMKFGGSS+ SAERM+EVA LILSFP+
Sbjct:    52 GLRVSCEALRVDLLQRKEPETCDSSGTGKELTCVMKFGGSSVESAERMKEVANLILSFPD 111

Query:   111 ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIA 170
             ERPVIVLSAMGKTTNKLL AGEKAV+CGVTN+  I+ELSF+K+LH RT  ELG++ ++I 
Sbjct:   112 ERPVIVLSAMGKTTNKLLKAGEKAVTCGVTNVESIEELSFIKELHLRTAHELGVETTVIE 171

Query:   171 THLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230
              HLE L QLLKGI+M+KELT R+RDYLVSFGECMSTR+F+AYLNKIG KARQYDAF+IGF
Sbjct:   172 KHLEGLHQLLKGISMMKELTLRTRDYLVSFGECMSTRLFSAYLNKIGHKARQYDAFEIGF 231

Query:   231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLT 290
             ITTDDFTNADILEATYPAV+K L GDW  + A+P+VTG+LGK WR+CAITTLGRGGSDLT
Sbjct:   232 ITTDDFTNADILEATYPAVSKTLVGDWSKENAVPVVTGYLGKGWRSCAITTLGRGGSDLT 291

Query:   291 ATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSM 350
             ATTIGKALGL+EIQVWKDVDGVLTCDPNI+P A+ VPYLTFDEAAELAYFGAQVLHP SM
Sbjct:   292 ATTIGKALGLREIQVWKDVDGVLTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSM 351

Query:   351 RPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYG 410
             RPAR+GDIPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYG
Sbjct:   352 RPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYG 411

Query:   411 FLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS 455
             FLAKVF+TFEDLGISVDVVATSEVS+SLTLDP+KLW RELIQ+ +
Sbjct:   412 FLAKVFTTFEDLGISVDVVATSEVSISLTLDPAKLWGRELIQRVN 456

GO:0004072 "aspartate kinase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=TAS

TAIR|locus:2078638 AK3 "aspartate kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1673 (594.0 bits), Expect = 3.8e-172, P = 3.8e-172
 Identities = 323/401 (80%), Positives = 367/401 (91%)

Query:    52 LRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNE 111
             LRV+CE  R++++ERK SE   ++++EK+LTCVMKFGGSS+ASAERM +VA+LILSFP+E
Sbjct:    54 LRVTCEAGRVELLERKASETFKLNKTEKKLTCVMKFGGSSVASAERMIQVAKLILSFPDE 113

Query:   112 RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIAT 171
             +PV+VLSAM KTTNKLL+AGEKAV CGVTN+  I+ELS++K+LH RT  ELG++ ++IA 
Sbjct:   114 KPVVVLSAMAKTTNKLLMAGEKAVCCGVTNVDTIEELSYIKELHIRTAHELGVETAVIAE 173

Query:   172 HLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231
             HLE LEQLLKG+AM+KELT RSRDYLVSFGECMSTR+FAAYLNKIG KARQYDAF+IG I
Sbjct:   174 HLEGLEQLLKGVAMMKELTLRSRDYLVSFGECMSTRLFAAYLNKIGHKARQYDAFEIGII 233

Query:   232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
             TTDDFTNADILEATYPAV+K+L GDW  + A+P+VTGFLGK WR+CA+TTLGRGGSDLTA
Sbjct:   234 TTDDFTNADILEATYPAVSKKLLGDWSKENALPVVTGFLGKGWRSCAVTTLGRGGSDLTA 293

Query:   292 TTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMR 351
             TTIGKALGL+EIQVWKDVDGVLTCDPNI+  A+PVP+LTFDEAAELAYFGAQVLHP SMR
Sbjct:   294 TTIGKALGLREIQVWKDVDGVLTCDPNIYCGAQPVPHLTFDEAAELAYFGAQVLHPLSMR 353

Query:   352 PAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGF 411
             PAREG+IPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGF
Sbjct:   354 PAREGNIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGF 413

Query:   412 LAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQ 452
             LAKVFSTFE LGISVDVVATSEVS+SLTLDPSK  SRELIQ
Sbjct:   414 LAKVFSTFEKLGISVDVVATSEVSISLTLDPSKFCSRELIQ 454

GO:0004072 "aspartate kinase activity" evidence=IEA;IGI

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=TAS

TAIR|locus:2183896 AK-LYS1 "aspartate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
 Identities = 325/404 (80%), Positives = 362/404 (89%)

Query:    53 RVSCEGARI---DVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFP 109
             +VS  G+R     V+E KK+E +  +  EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP
Sbjct:    56 KVSGSGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFP 114

Query:   110 NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSII 169
              E PVIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I
Sbjct:   115 EESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVI 174

Query:   170 ATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229
              T+LEELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IG
Sbjct:   175 LTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIG 234

Query:   230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDL 289
             FITTDDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDL
Sbjct:   235 FITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDL 294

Query:   290 TATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
             TATTIGKALGL+EIQVWKDVDGVLTCDP I+  A PVPYLTFDEAAELAYFGAQVLHPQS
Sbjct:   295 TATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQS 354

Query:   350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
             MRPAREG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ 
Sbjct:   355 MRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQV 414

Query:   410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ 453
             GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ
Sbjct:   415 GFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQ 458

GO:0004072 "aspartate kinase activity" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

UNIPROTKB|P08660 lysC "LysC" [Escherichia coli K-12 (taxid:83333)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 135/365 (36%), Positives = 198/365 (54%)

Query:    84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
             V KFGG+S+A  + M   A+++LS  N R ++VLSA    TN L+   E     G+    
Sbjct:     6 VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLVALAE-----GLEPGE 59

Query:   144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
               ++L  ++++    ++ L     I     EE+E+LL+ I +L E      +P   D LV
Sbjct:    60 RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115

Query:   199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
             S GE MST +F   L +  V+A+ +D   +   T D F  A   E    A+A+      +
Sbjct:   116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRA---EPDIAALAELAALQLL 171

Query:   259 TDL--AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
               L   + I  GF+G   +    TTLGRGGSD TA  + +AL    + +W DV G+ T D
Sbjct:   172 PRLNEGLVITQGFIGSENKG-RTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD 230

Query:   317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
             P +   AK +  + F EAAE+A FGA+VLHP ++ PA   DIPV V +S +P A GTL+ 
Sbjct:   231 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVC 290

Query:   377 RSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
                + +  +  ++ L+RN T+L + S  ML   GFLA+VF       ISVD++ TSEVS+
Sbjct:   291 NKTE-NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSV 349

Query:   437 SLTLD 441
             +LTLD
Sbjct:   350 ALTLD 354

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

TIGR_CMR|SO_3986 SO_3986 "aspartokinase III, lysine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 128/364 (35%), Positives = 205/364 (56%)

Query:    84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
             V KFGG+S+A    M   AE++L  P+ R ++V+SA    TN L+   +++++    +  
Sbjct:     5 VAKFGGTSVADYGAMNRCAEIVLGNPDCR-LVVVSASSGVTNLLVELTQESIN----DDG 59

Query:   144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE--LTPRSR---DYLV 198
              +  L  +  + +  +D+LG    + A     L++LL  +A+L E  ++ RS+   D L+
Sbjct:    60 RLQRLKQIAQIQYAILDKLGRPNDVAAA----LDKLLSRMAVLSEALVSARSKATMDELL 115

Query:   199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
             S GE  S+ +FAA L + G  +  +D   +  + TD  F  A+  +    A+  R H   
Sbjct:   116 SLGEQCSSALFAAVLREKGANSSAFDVRRV--LRTDSHFGRAEP-QVEQIALLSREHLLP 172

Query:   258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
             +    + +  GF+G A      TTLGRGGSD +A  + +AL    +++W DV G+ T DP
Sbjct:   173 LLSEQVIVTQGFIG-ADEAGQTTTLGRGGSDYSAALLAEALTASAVEIWTDVAGIYTTDP 231

Query:   318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
              + P+A P+  ++F+EAAE+A FGA+VLHP ++ PA    I V V +S  P   GT IR 
Sbjct:   232 RLAPNAHPIAEISFNEAAEMATFGAKVLHPATILPAVRQQIQVFVGSSKEPEKGGTWIRH 291

Query:   378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
               +    V  ++ L+R+ T+L++ S +ML   GFLA+ F+T     ISVD++ TSEV++S
Sbjct:   292 QVE-DAPVFRAVALRRDQTLLNLHSLQMLHAQGFLAETFATLARHKISVDLITTSEVNVS 350

Query:   438 LTLD 441
             LTLD
Sbjct:   351 LTLD 354

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|Q9KUW8 VC_0391 "Aspartokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 125/364 (34%), Positives = 202/364 (55%)

Query:    84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
             V KFGG+S+A+ E M   + +I + P  R ++V SA    TN LL+     V+      +
Sbjct:    34 VAKFGGTSVANFEAMSRCSAIIENNPQTR-LVVSSACSGVTN-LLVELANGVASTERRQA 91

Query:   144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
              + +L+   D+H+  +D+L  D + +    +E++ +L  +A   E      + +  D+LV
Sbjct:    92 ILQQLA---DIHYVIIDQLA-DPTRVE---KEVKAVLDSVASAAEAASFQSSKKLTDHLV 144

Query:   199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
             + GE +ST I    + + GV A ++D  ++  + TDD +  A+        +AK      
Sbjct:   145 ACGELISTYILTQLMRERGVDAVRFDIREV--LRTDDHYGRAEPQLKEIAQLAKEKLVP- 201

Query:   258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
             + +  + +  GF+G   +    TTLGRGGSD +A  I +A+    +++W DV G+ + DP
Sbjct:   202 LCEQYVVVTQGFIGSDAQGNT-TTLGRGGSDYSAALIAEAVQASGLEIWTDVPGIYSTDP 260

Query:   318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
              I P A P+P ++F EA+E+A FGA++LHP ++ PA    IPV V +S  P   GT IR+
Sbjct:   261 RIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFVGSSKEPEKGGTWIRK 320

Query:   378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
               + S  +  ++ L+ N TM+ + S +M   YGFLAKVF       ISVD++ TSE+S+S
Sbjct:   321 QVE-SAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILAKHKISVDLITTSEISVS 379

Query:   438 LTLD 441
             LTLD
Sbjct:   380 LTLD 383

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|VC_0391 VC_0391 "aspartokinase III, lysine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 125/364 (34%), Positives = 202/364 (55%)

Query:    84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
             V KFGG+S+A+ E M   + +I + P  R ++V SA    TN LL+     V+      +
Sbjct:    34 VAKFGGTSVANFEAMSRCSAIIENNPQTR-LVVSSACSGVTN-LLVELANGVASTERRQA 91

Query:   144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
              + +L+   D+H+  +D+L  D + +    +E++ +L  +A   E      + +  D+LV
Sbjct:    92 ILQQLA---DIHYVIIDQLA-DPTRVE---KEVKAVLDSVASAAEAASFQSSKKLTDHLV 144

Query:   199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
             + GE +ST I    + + GV A ++D  ++  + TDD +  A+        +AK      
Sbjct:   145 ACGELISTYILTQLMRERGVDAVRFDIREV--LRTDDHYGRAEPQLKEIAQLAKEKLVP- 201

Query:   258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
             + +  + +  GF+G   +    TTLGRGGSD +A  I +A+    +++W DV G+ + DP
Sbjct:   202 LCEQYVVVTQGFIGSDAQGNT-TTLGRGGSDYSAALIAEAVQASGLEIWTDVPGIYSTDP 260

Query:   318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
              I P A P+P ++F EA+E+A FGA++LHP ++ PA    IPV V +S  P   GT IR+
Sbjct:   261 RIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFVGSSKEPEKGGTWIRK 320

Query:   378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
               + S  +  ++ L+ N TM+ + S +M   YGFLAKVF       ISVD++ TSE+S+S
Sbjct:   321 QVE-SAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILAKHKISVDLITTSEISVS 379

Query:   438 LTLD 441
             LTLD
Sbjct:   380 LTLD 383

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

POMBASE|SPBC19F5.04 SPBC19F5.04 "aspartate kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 370 (135.3 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
 Identities = 107/324 (33%), Positives = 171/324 (52%)

Query:    69 SENLGVDESEKQLTCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGK---- 122
             ++N+  D S+  +  V KFGG+S+     +   +VA+  LS   +R  +V SA       
Sbjct:     4 AKNIENDPSKGWV--VQKFGGTSVGKFPIKIAVDVAKEYLS--TKRVALVCSARSTDTKA 59

Query:   123 --TTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT----VDELGI-DRSIIATHLE- 174
               TT +L+ A E A+   V ++   D +  ++  H +     + ++GI D  I A H + 
Sbjct:    60 EGTTTRLIRATEAALRPAVGSVH--DLVRIIETDHVQAARDFIQDVGIQDELIDAFHADC 117

Query:   175 -ELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233
              ELEQ L  I +L E++PR+RD ++  GE +S R  AA L   G+ +   D   I     
Sbjct:   118 VELEQYLNAIRVLSEVSPRTRDLVIGMGERLSCRFMAAVLKDQGIDSEFIDMSHI-IDEQ 176

Query:   234 DDFTNADILEATYPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
              ++ N D   + Y  +A +L    +T +   +P+VTGF G       ++ +GRG +D  A
Sbjct:   177 REWRNLDA--SFYAYLASQLASK-VTAVGNKVPVVTGFFGMV-PGGLLSQIGRGYTDFCA 232

Query:   292 TTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMR 351
               +   L   E+Q+WK+VDG+ T DP   P A+ +P +T +EAAEL Y+G++V+HP +M 
Sbjct:   233 ALLAVGLNADELQIWKEVDGIFTADPRKVPTARLLPLITPEEAAELTYYGSEVIHPFTMS 292

Query:   352 PAREGDIPVRVKNSYNPNAPGTLI 375
                   IP+R+KN  NP   GT+I
Sbjct:   293 QVVHARIPIRIKNVGNPRGKGTVI 316

GO:0004072 "aspartate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006531 "aspartate metabolic process" evidence=IC

GO:0006555 "methionine metabolic process" evidence=ISO

GO:0009088 "threonine biosynthetic process" evidence=ISO

GO:0009090 "homoserine biosynthetic process" evidence=ISO

GO:0016597 "amino acid binding" evidence=IEA

TIGR_CMR|CPS_2004 CPS_2004 "aspartokinase III, lysine-sensitive" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 123/385 (31%), Positives = 205/385 (53%)

Query:    76 ESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAV 135
             +S   LT V KFGG+S+A  + M   A +I +  N   ++V+SA    TN L+   +K V
Sbjct:     5 QSTSSLT-VAKFGGTSVADYQAMLRCANIIKN-DNSNRLVVVSASSGVTNLLVRLSQKNV 62

Query:   136 SCGVTNISCIDELSFVKD--LHHRTVD-ELGIDRSIIATHLEELEQLLKGIAMLKELTPR 192
             S  +     ++ +  ++     H + D E  +++ I +  L+EL Q    +  L + + +
Sbjct:    63 SV-IEQKDIVENIRAIQVNITQHLSSDVEAQLNQEINSL-LDELTQ--HALTQLLQYSTK 118

Query:   193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAV-AK 251
             + D +++FGE  S+RIFA  L  + +    ++   +  + T+      +++    +  + 
Sbjct:   119 TADAILAFGEQFSSRIFAQVLQSVDIPGEYFNVQQV--MKTNSLYGKAVVDLNQLSEQST 176

Query:   252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
             +L    + D  I +  GF+G+  +    TTLGRGGSD +A  + +AL    + +W DV G
Sbjct:   177 QLLAPKLIDKVI-VTQGFIGQDSQGHT-TTLGRGGSDYSAALLAEALNGTNLSIWTDVVG 234

Query:   312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
             + T DP I   A+ +  ++F EAAE+A FGA++LHP ++ PA   +IPV V +S  P   
Sbjct:   235 IFTTDPRITDQARAIKEISFGEAAEMATFGAKILHPATLIPAMRRNIPVFVGSSKEPEKG 294

Query:   372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431
             GT I++  D S     SI L+R  T++ + S  ML   GFLAKVF       +S+D++ T
Sbjct:   295 GTQIKQKVD-SNPTYRSIALRREQTLVTVKSPAMLHASGFLAKVFGVLAKHELSIDLITT 353

Query:   432 SEVSLSLTLDPSKLWSRELIQQASV 456
             SE+S++LT D     ++ LI  A V
Sbjct:   354 SEISVALTFDNPSGSTQSLITNAVV 378

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P0A4Z8 ask "Aspartokinase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 331 (121.6 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 85/242 (35%), Positives = 133/242 (54%)

Query:   191 PRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVA 250
             PR  D L++ GE +S  + A  +  +G  AR +     G ITT    NA I++ T P   
Sbjct:    63 PRELDMLLTAGERISNALVAMAIESLGAHARSFTGSQAGVITTGTHGNAKIIDVT-PG-- 119

Query:   251 KRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310
              RL    + +  + +V GF G +  T  +TTLGRGGSD TA  +  ALG    +++ DVD
Sbjct:   120 -RLQTA-LEEGRVVLVAGFQGVSQDTKDVTTLGRGGSDTTAVAMAAALGADVCEIYTDVD 177

Query:   311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA 370
             G+ + DP I  +A+ +  +TF+E  E+A  GA+VL  + +  AR  +IPV V++SY+ + 
Sbjct:   178 GIFSADPRIVRNARKLDTVTFEEMLEMAACGAKVLMLRCVEYARRHNIPVHVRSSYS-DR 236

Query:   371 PGTLIRRS-RD--MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
             PGT++  S +D  M   +LT +   R+   + IV    +   G+ AKVF    D  +++D
Sbjct:   237 PGTVVVGSIKDVPMEDPILTGVAHDRSEAKVTIVGLPDIP--GYAAKVFRAVADADVNID 294

Query:   428 VV 429
             +V
Sbjct:   295 MV 296

GO:0004072 "aspartate kinase activity" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IDA

GO:0019877 "diaminopimelate biosynthetic process" evidence=IDA

GO:0040007 "growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S702	AK3_ARATH	2, ., 7, ., 2, ., 4	0.7396	0.9890	0.8067	no	no
O23653	AK2_ARATH	2, ., 7, ., 2, ., 4	0.7652	0.9539	0.7996	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.2	0.976
4th Layer	2.7.2.4	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037944001	RecName- Full=Aspartokinase; EC=2.7.2.4; (569 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00030599001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (344 aa)	•		•			•	•		0.970
	GSVIVG00017913001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (430 aa)	•			•		•	•		0.947
	GSVIVG00026365001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (363 aa)	•		•				•		0.935
	GSVIVG00027272001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (403 aa)						•	•		0.875
	GSVIVG00017396001	RecName- Full=Homoserine dehydrogenase; EC=1.1.1.3; (377 aa)	•	•	•		•		•		0.872
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)	•			•		•	•		0.869
	GSVIVG00024074001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (589 aa)				•		•	•		0.839
	GSVIVG00012864001	SubName- Full=Chromosome undetermined scaffold_408, whole genome shotgun sequence; (369 aa)				•		•	•		0.810
	GSVIVG00016723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa)						•			0.808
	GSVIVG00032723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa)						•			0.807

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
PLN02551	521	PLN02551, PLN02551, aspartokinase	0.0
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	1e-159
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	1e-118
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	1e-113
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	1e-108
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	1e-103
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	9e-96
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	2e-92
cd04257	294	cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina	1e-86
PRK09436	819	PRK09436, thrA, bifunctional aspartokinase I/homos	2e-86
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	5e-84
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	8e-80
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	6e-69
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	5e-68
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	3e-63
PRK08961	861	PRK08961, PRK08961, bifunctional aspartate kinase/	5e-63
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	3e-62
cd04245	288	cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami	3e-62
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	3e-61
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	1e-58
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	1e-54
cd04259	295	cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki	5e-49
PRK09466	810	PRK09466, metL, bifunctional aspartate kinase II/h	2e-42
PRK08373	341	PRK08373, PRK08373, aspartate kinase; Validated	7e-42
cd04247	306	cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kina	2e-41
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	3e-40
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	1e-39
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	8e-37
TIGR02078	327	TIGR02078, AspKin_pair, Pyrococcus aspartate kinas	1e-34
PRK05925	440	PRK05925, PRK05925, aspartate kinase; Provisional	4e-34
cd04933	78	cd04933, ACT_AK1-AT_1, ACT domains located C-termi	7e-33
cd04912	75	cd04912, ACT_AKiii-LysC-EC-like_1, ACT domains loc	3e-22
cd04248	304	cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Aci	4e-17
cd04890	62	cd04890, ACT_AK-like_1, ACT domains found C-termin	2e-15
PRK09181	475	PRK09181, PRK09181, aspartate kinase; Validated	1e-13
cd04932	75	cd04932, ACT_AKiii-LysC-EC_1, ACT domains located	2e-12
cd04868	60	cd04868, ACT_AK-like, ACT domains C-terminal to th	2e-08
cd04935	75	cd04935, ACT_AKiii-DAPDC_1, ACT domains of a bifun	3e-08
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	4e-06
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	5e-06
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	2e-05
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	3e-05
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	3e-05
cd04934	73	cd04934, ACT_AK-Hom3_1, CT domains located C-termi	6e-05
cd04923	63	cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of t	2e-04
cd04936	63	cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of t	5e-04
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	0.004
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	0.004

>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase

 Score =  827 bits (2137), Expect = 0.0
 Identities = 341/423 (80%), Positives = 370/423 (87%)

Query: 31  CVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGS 90
                         S      LRV+C   R++ +    SE      +EKQLT VMKFGGS
Sbjct: 2   VPVGGGSARRRSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGS 61

Query: 91  SLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150
           S+ASAERMREVA+LILSFP+ERPV+VLSAMGKTTN LLLAGEKAVSCGVTN+S I+ELS 
Sbjct: 62  SVASAERMREVADLILSFPDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSA 121

Query: 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFA 210
           +++LH RT DELG+D S++   L+ELEQLLKGIAM+KELTPR+RDYLVSFGE MSTRIFA
Sbjct: 122 IRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFA 181

Query: 211 AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFL 270
           AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI D A+P+VTGFL
Sbjct: 182 AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFL 241

Query: 271 GKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330
           GK W+T AITTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDP I+P+A PVPYLT
Sbjct: 242 GKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLT 301

Query: 331 FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390
           FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP APGTLI ++RDMSKAVLTSIV
Sbjct: 302 FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDMSKAVLTSIV 361

Query: 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSREL 450
           LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVS+SLTLDPSKLWSREL
Sbjct: 362 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSREL 421

Query: 451 IQQ 453
           IQQ
Sbjct: 422 IQQ 424

Length = 521

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score =  452 bits (1165), Expect = e-159
 Identities = 163/300 (54%), Positives = 198/300 (66%), Gaps = 7/300 (2%)

Query: 82  TCVMKFGGSSLASAERMREVAELIL-SFPNERPVIVLSAMGKTTNKLLLAGEKAVS---C 137
             VMKFGG+S+ SAER+R VA+L+         V+V+SAMG  T++LLLA E AVS    
Sbjct: 1   RLVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIA 60

Query: 138 GVTNISCIDELSFVKDLHHRTVDELGI-DRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
           GV +   I  L  +K       DE      SII + LEELE+LL GIA L ELTPRSRDY
Sbjct: 61  GVKDFIEILRLRHIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDY 120

Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
           +VSFGE +S  IF+A L  +G+KAR  D  + G IT D+F NA  L ATY  V KRL   
Sbjct: 121 IVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPM 180

Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
              D  IP+VTGF+G      AITTLGRGGSD +AT IG AL   EI +WKDVDGV+T D
Sbjct: 181 L-EDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTAD 238

Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
           P I P A+ +P L++ EA ELAYFGA+VLHP+++ PA E  IPVRVKN++NP APGTLI 
Sbjct: 239 PRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT 298

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score =  352 bits (906), Expect = e-118
 Identities = 136/365 (37%), Positives = 204/365 (55%), Gaps = 15/365 (4%)

Query: 83  CVMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVT 140
            V KFGG+S+A AER+  VA+++     E  + V+V+SAMG  T+ L+   E A S    
Sbjct: 4   IVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD- 62

Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
                      +D+    + +  I   +    + E +++L GIA+L E++PR RD L+S 
Sbjct: 63  ----AVAEQRHRDIASELILDPFIAARLAEV-IAEFKKVLLGIALLGEVSPRERDELLSL 117

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATYPAVAKRLHGDWIT 259
           GE +S  + AA LN +GV AR  D    G  T  +  NA IL E +   + + L      
Sbjct: 118 GERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEG--- 174

Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
              +P+V GF G        TTLGRGGSD +A  +  ALG  E+++W DVDGV T DP I
Sbjct: 175 --KVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRI 231

Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR 379
            P A+ +P ++++EA ELAY GA+VLHP+++ PA    IP+R+KN++NP+APGTLI    
Sbjct: 232 VPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAET 291

Query: 380 DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLT 439
           +  + V+  I L  NV ++ +    M G  GF A+VF    + GI+VD++  S   +S++
Sbjct: 292 ESDEPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSIS 351

Query: 440 LDPSK 444
               +
Sbjct: 352 FTVPE 356

Length = 447

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score =  340 bits (875), Expect = e-113
 Identities = 153/374 (40%), Positives = 233/374 (62%), Gaps = 16/374 (4%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           VMKFGG+S+   ER+R VA+L+  + +E    V+V+SAM   T+ LL   E+A+     +
Sbjct: 4   VMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVR--D 61

Query: 142 ISCIDEL-SFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELTPRS 193
           I+ + +  + +++ H++ ++E   D          I + +EELE+ L G++ L ELTPRS
Sbjct: 62  IAKVKDFIADLRERHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRS 121

Query: 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL 253
           RDY++SFGE +S  I +  L  +G+K+      + G IT  +F NA  L  TY  V +RL
Sbjct: 122 RDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERL 181

Query: 254 HGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313
               + +  IP+VTGF+G       ITTLGRGGSD +A  IG AL   EI +W DVDGV+
Sbjct: 182 EPL-LKEGVIPVVTGFIG-ETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVM 239

Query: 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
           T DP I P A+ +P +++ EA EL+YFGA+VLHP+++ PA E  IPVRVKN++NP  PGT
Sbjct: 240 TTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGT 299

Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T 431
           LI    + SK V+ ++ L +NV +++I    M+G  G  A++FS   + G++V +++  +
Sbjct: 300 LITSDSESSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS 359

Query: 432 SEVSLSLTLDPSKL 445
           SE ++SL +D + L
Sbjct: 360 SESNISLVVDEADL 373

Length = 465

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score =  326 bits (839), Expect = e-108
 Identities = 136/368 (36%), Positives = 197/368 (53%), Gaps = 28/368 (7%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
           V KFGG+S+A  + M   A+++LS PN   ++VLSA    TN L+   E A   G   ++
Sbjct: 3   VAKFGGTSVADFDAMNRSADIVLSNPN-TRLVVLSASAGVTNLLVALAEGAEP-GDERLA 60

Query: 144 CIDELSFVKDLHHRTVDELGIDRSI---IATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
            +DE   ++ + +  +D LG    +   I   LE +  L +  ++    +P   D LVS 
Sbjct: 61  LLDE---IRQIQYAILDRLGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSH 115

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA-----DILEATYPAVAKRLHG 255
           GE MST +F   L + GV+A  +D   +   T D F  A      + E     +   L  
Sbjct: 116 GELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGRAEPDVAALAELAQEQLLPLL-- 172

Query: 256 DWITDLAIPIVTGFLG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313
                  + +  GF+G  +  RT   TTLGRGGSD +A  + +AL    +++W DV G+ 
Sbjct: 173 ----AEGVVVTQGFIGSDEKGRT---TTLGRGGSDYSAALLAEALNASRVEIWTDVPGIY 225

Query: 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
           T DP I P AK +  ++F+EAAE+A FGA+VLHP ++ PA   +IPV V +S +P A GT
Sbjct: 226 TTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGT 285

Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE 433
            I    +       +I L+RN T+L + S  ML   GFLA+VF       ISVD++ TSE
Sbjct: 286 WICNDTENPPLF-RAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTSE 344

Query: 434 VSLSLTLD 441
           VS+SLTLD
Sbjct: 345 VSVSLTLD 352

Length = 448

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score =  308 bits (792), Expect = e-103
 Identities = 115/299 (38%), Positives = 180/299 (60%), Gaps = 16/299 (5%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
           V+KFGG+S+ASAER+R VA++I S  +   ++V+SA+G  TN+L+   E A S       
Sbjct: 3   VLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGDDAQAI 62

Query: 144 CIDELSFVKDLHHRTVDELGID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
            + E+   ++ H   + EL          + + + LE L+ LL+GI +L EL+ ++R  +
Sbjct: 63  VLQEI---RERHLDLIKELLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEV 119

Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
           +SFGE +S+R+ +AYL + G+ A   DA ++  +T D F NA +         +RL    
Sbjct: 120 LSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDGFLNAVVD---LKLSKERLA-QL 174

Query: 258 ITDLA-IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
           + +   + +  GF+         TTLGRGGSD +A  +   L  +E+++W DVDGV T D
Sbjct: 175 LAEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTAD 233

Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
           P   P A+ +  L++DEA ELAYFGA+VLHP++++PA   +IP+ +KN++NP APGTLI
Sbjct: 234 PRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLI 292

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score =  295 bits (756), Expect = 9e-96
 Identities = 133/364 (36%), Positives = 201/364 (55%), Gaps = 24/364 (6%)

Query: 84  VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V KFGG+S+ +AER+R VA+++L       + V+V+SAM   T+ L+   E+A       
Sbjct: 4   VQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPS-- 61

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
               + L  +++ H        ++R I     EEL++LL    +L E  PR  D ++SFG
Sbjct: 62  ---KEFLEKIREKH-----IEILERLIPQAIAEELKRLLDAELVL-EEKPREMDRILSFG 112

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA-DILEATYPAVAKRLHGDWITD 260
           E +S  + +A L ++GVKA      + G +T  +F  A  I+E     +   L       
Sbjct: 113 ERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEG---- 168

Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
             IP+V GF G A      TTLGRGGSD TA  +  AL   E +++ DVDG+ T DP I 
Sbjct: 169 -IIPVVAGFQG-ATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIV 226

Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD 380
           P A+ +  ++++E  ELA FGA+VLHP+++ PA    IP+ VK+++NP APGTLI  S  
Sbjct: 227 PDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTK 286

Query: 381 -MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLS 437
            M + ++  + L RN   + +    M G  GFLA+VF    + GI+VD++   +SE S+S
Sbjct: 287 EMEEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGINVDLITQSSSETSIS 345

Query: 438 LTLD 441
            T+D
Sbjct: 346 FTVD 349

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score =  278 bits (714), Expect = 2e-92
 Identities = 115/296 (38%), Positives = 160/296 (54%), Gaps = 74/296 (25%)

Query: 83  CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
            V KFGG+S+ASAER++ VA++I ++    R V+V+SAMG                GVT+
Sbjct: 2   VVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMG----------------GVTD 45

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
                                             L +L                 L+SFG
Sbjct: 46  ---------------------------------LLIELA---------------LLLSFG 57

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL--HGDWIT 259
           E +S R+ AA L   G+KAR  DA   G  T D+   A I+E +Y  + + L   G    
Sbjct: 58  ERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGK--- 114

Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
              +P+VTGF+G+      ITTLGRGGSD +A  +  ALG  E+++W DVDG+ T DP I
Sbjct: 115 ---VPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170

Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
            P A+ +P +++DEA ELAYFGA+VLHP+++ PAR+ +IP+RVKN++NP APGTLI
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLI 226

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

 Score =  266 bits (682), Expect = 1e-86
 Identities = 114/300 (38%), Positives = 175/300 (58%), Gaps = 17/300 (5%)

Query: 84  VMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
           V+KFGG+SLA+AER+R VA++IL+    E+  +V+SA GK T+ LL   E A S    + 
Sbjct: 3   VLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASS---GDD 59

Query: 143 SCIDELSFVKDLHHRTVDEL------GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
           +  D L  ++  H   + EL          S +   LEEL+ LL+GI +L EL    R  
Sbjct: 60  AYEDILQELESKHLDLITELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAK 119

Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
           ++SFGE +S R+ +A LN+ G+ A   DA ++  +T   + NA +         +R+   
Sbjct: 120 VLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDGGYLNAVVDIE---LSKERIK-A 174

Query: 257 WITDLA-IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
           W +    + +VTGF+         TTLGR GSD +A  +   L   ++++W DVDGV + 
Sbjct: 175 WFSSNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSA 233

Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
           DP     A+ +P L++ EA EL+YFGA+VLHP++++P  + +IP+ +KN++NP APGTLI
Sbjct: 234 DPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLI 293

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294

>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

 Score =  280 bits (720), Expect = 2e-86
 Identities = 120/374 (32%), Positives = 184/374 (49%), Gaps = 25/374 (6%)

Query: 84  VMKFGGSSLASAERMREVAELILS-FPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
           V+KFGG+S+A+AER   VA++I S    E+  +VLSA  K TN L+   EKA        
Sbjct: 3   VLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAA----KGD 58

Query: 143 SCIDELSFVKDLHHRTVDEL-----GIDRS----IIATHLEELEQLLKGIAMLKELTPRS 193
               E+   + + H  +D L     G D +     +     +L+ +L GI++L E     
Sbjct: 59  DAYPEILDAERIFHELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSV 118

Query: 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEAT--YPAVAK 251
              ++S GE +S  I AA L   G      D  +   +  D       LE+T       +
Sbjct: 119 NAAIISRGERLSIAIMAAVLEARGHDVTVIDPRE--LLLAD----GHYLESTVDIAESTR 172

Query: 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
           R+   +I    + ++ GF         + TLGR GSD +A  +   L     ++W DVDG
Sbjct: 173 RIAASFIPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDG 231

Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
           V T DP + P A+ +  L++ EA EL+YFGA+VLHP+++ P  +  IP  +KN++NP AP
Sbjct: 232 VYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAP 291

Query: 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV-- 429
           GTLI    D     +  I    N+ M ++    M G  G  ++VF+     GISV ++  
Sbjct: 292 GTLIGAESDEDSLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQ 351

Query: 430 ATSEVSLSLTLDPS 443
           ++SE S+S  +  S
Sbjct: 352 SSSEYSISFCVPQS 365

Length = 819

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score =  263 bits (674), Expect = 5e-84
 Identities = 126/362 (34%), Positives = 185/362 (51%), Gaps = 61/362 (16%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V KFGG+S+ S ER++  A ++L    E  + V+V+SAM   T+ L+   EKA+      
Sbjct: 4   VQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIR----- 58

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
                                                          +TPR RD LVS G
Sbjct: 59  ---------------------------------------------DAITPRERDELVSHG 73

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
           E +S+ +F+  L  +GVKA   D  + G IT D+F NA I      A  +RL    + + 
Sbjct: 74  ERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDII---ATEERLL-PLLEEG 129

Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
            I +V GF G A      TTLGRGGSD TA  +  AL    + ++ DV GV T DP +  
Sbjct: 130 IIVVVAGFQG-ATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVE 188

Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM 381
            AK +  ++++EA ELA FGA+VLHP+++ PA    +P+ V++S++P   GTLI  S + 
Sbjct: 189 AAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE-EGTLITNSMEN 247

Query: 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLT 439
              V   I L++NVT + +    MLG+ GFLA++F    +  I+VD+++   SE S+SLT
Sbjct: 248 PPLV-KGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLT 306

Query: 440 LD 441
           +D
Sbjct: 307 VD 308

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score =  248 bits (636), Expect = 8e-80
 Identities = 116/301 (38%), Positives = 166/301 (55%), Gaps = 19/301 (6%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
           V KFGG+S+A    M   A ++ S  +   ++V+SA    TN L+   + A S     I 
Sbjct: 3   VAKFGGTSVADYAAMLRCAAIVKSDAS-VRLVVVSASAGVTNLLVALADAAES--GEEIE 59

Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIA---THLEELEQLLKGIAMLKELTPRSRDYLVSF 200
            I +L  ++ +H   ++ LG    + A     LEEL QL +G A+L EL+P SRD L+SF
Sbjct: 60  SIPQLHEIRAIHFAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSF 119

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
           GE MS+ +F+  L + GV A  +D   +   T   F  A        A+A+      +  
Sbjct: 120 GERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGRAAPDL---NALAEL-AAKLLKP 174

Query: 261 LAIP--IVT-GFLGK--AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
           L     +VT GF+G     RT   TTLGRGGSD +A  + +AL  +E+Q+W DV G+ T 
Sbjct: 175 LLAGTVVVTQGFIGSTEKGRT---TTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT 231

Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
           DP I P A+ +  ++F EAAE+A FGA+VLHP ++ PA   +IPV V +S +P A GTLI
Sbjct: 232 DPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLI 291

Query: 376 R 376
            
Sbjct: 292 T 292

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score =  224 bits (574), Expect = 6e-69
 Identities = 112/367 (30%), Positives = 175/367 (47%), Gaps = 75/367 (20%)

Query: 84  VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V KFGG+S+   ER++ VAE + +      + V+V+SAMG TT                 
Sbjct: 5   VQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTT----------------- 47

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
                             DEL                    + + KE++P    R  D L
Sbjct: 48  ------------------DEL--------------------LDLAKEVSPLPDPRELDML 69

Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL-HGD 256
           +S GE +S  + A  L  +GVKAR +  +  G IT      A I +     + + L  GD
Sbjct: 70  LSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGD 129

Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
                 + +V GF G       ITTLGRGGSD TA  +  AL   E +++ DVDGV T D
Sbjct: 130 ------VVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTD 182

Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
           P I P A+ +  ++++E  ELA  GA+VLHP+S+  A++ ++P+RV++S++ + PGTLI 
Sbjct: 183 PRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS-DNPGTLIT 241

Query: 377 RSRD--MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEV 434
              +  M + V+T I   ++   + +V   +  + G  A++F    +  I+VD++  + V
Sbjct: 242 GEEEEIMEQPVVTGIAFDKDEAKVTVV--GVPDKPGIAAQIFGALAEANINVDMIVQN-V 298

Query: 435 SLSLTLD 441
           S     D
Sbjct: 299 SEDGKTD 305

Length = 404

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score =  216 bits (553), Expect = 5e-68
 Identities = 101/296 (34%), Positives = 149/296 (50%), Gaps = 64/296 (21%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLL-LAGEKAVSCGVT 140
           V KFGG+S+A  ER++ VAE I     +  + V+V+SAMG TT++L+ LA  K VS    
Sbjct: 3   VQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLA--KEVS---- 56

Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
                                                            +PR  D L+S 
Sbjct: 57  ----------------------------------------------PRPSPRELDMLLST 70

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLH-GDWIT 259
           GE +S  + A  LN++G+KA     +  G +T D   NA I++     + + L  GD   
Sbjct: 71  GEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGD--- 127

Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
              + +V GF G       ITTLGRGGSD TA  +  AL     +++ DVDGV T DP I
Sbjct: 128 ---VVVVAGFQG-VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI 183

Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
            P A+ +  +++DE  E+A  GA+VLHP+S+  A++ ++P+RV++S++ N PGTLI
Sbjct: 184 VPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN-PGTLI 238

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score =  211 bits (539), Expect = 3e-63
 Identities = 122/377 (32%), Positives = 184/377 (48%), Gaps = 21/377 (5%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK------LLLAGEKAVSC 137
           V+KFGGSSLASAE+ ++V  ++ S P ER ++V+SA GK   +      LL+   +AV  
Sbjct: 3   VVKFGGSSLASAEQFKKVLNIVKSDP-ERKIVVVSAPGKRFKEDTKVTDLLILYAEAV-- 59

Query: 138 GVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
            +      D    +   +     ELG+D  I+    E LE L            R  D  
Sbjct: 60  -LAGEDYEDIFEAIIARYAEIAKELGLDADILEKIEEILEHLANL---ASRNPDRLLDAF 115

Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
            + GE ++ ++ AAYLN  G+ AR  D  + G I TD+  NA +L  +Y  + K    D 
Sbjct: 116 KARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDE 175

Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
              L IP   GF G   +   I T  RGGSD+T   + + +     + + DVDG+   +P
Sbjct: 176 K--LVIP---GFFG-VTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANP 229

Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
            I  + K +  +T+ E  EL+Y G  V H +++ PA  G IP+ +KN+ NP  PGTLI  
Sbjct: 230 RIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVP 289

Query: 378 SRD-MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
            RD  +K  +T I   +  T + I    M  + GF  KV    ED GIS + + +    L
Sbjct: 290 DRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDL 349

Query: 437 SLTLDPSKLWSRELIQQ 453
           S+ +   +L + +   +
Sbjct: 350 SIIIRERQL-TPKKEDE 365

Length = 454

>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

 Score =  218 bits (557), Expect = 5e-63
 Identities = 111/371 (29%), Positives = 196/371 (52%), Gaps = 22/371 (5%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V+KFGG+S++   R   +A+++     E  R ++V+SA+   +N+L    E  ++     
Sbjct: 11  VLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNEL----EAIIAAAGAG 66

Query: 142 ISCIDELSFVKDLHHRTVDELGID-RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
            S    ++ ++  H   + ELG+D  +++A  L  L++LL GI  L   + R +  ++  
Sbjct: 67  DS-ASRVAAIRQRHRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQ 125

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD--WI 258
           GE +ST + AAYL   G+     DA +           ++   + Y +V+ +   D    
Sbjct: 126 GELLSTTLGAAYLEASGLDMGWLDAREW-LTALPQPNQSE--WSQYLSVSCQWQSDPALR 182

Query: 259 TDLA-----IPIVTGFLGK-AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
              A     + I  GF+ + A    A+  LGRGGSD +A      LG   +++W DV G+
Sbjct: 183 ERFAAQPAQVLITQGFIARNADGGTAL--LGRGGSDTSAAYFAAKLGASRVEIWTDVPGM 240

Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
            + +P   P A+ +  L +DEA E+A  GA+VLHP+S++P R+  IP+ + ++  P+  G
Sbjct: 241 FSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSG 300

Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432
           T I    +    V  +I  K  + ++ + +  M  Q GFLA VF+ F+  G+SVD++++S
Sbjct: 301 TSIDGDAEPVPGV-KAISRKNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSS 359

Query: 433 EVSLSLTLDPS 443
           E +++++LDPS
Sbjct: 360 ETNVTVSLDPS 370

Length = 861

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score =  201 bits (514), Expect = 3e-62
 Identities = 98/299 (32%), Positives = 143/299 (47%), Gaps = 70/299 (23%)

Query: 84  VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLL-LAGEKAVSCGVT 140
           V KFGG+S+AS ER++ VAE I        + V+V+SAMG TT++L+ LA  K +S    
Sbjct: 3   VQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELA--KEIS---- 56

Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
                                                              R  D L+S 
Sbjct: 57  ----------------------------------------------PRPPARELDVLLST 70

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
           GE +S  + A  LN++G+KA     +  G +T      A I++         +  D I +
Sbjct: 71  GEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIID---------IDPDRIRE 121

Query: 261 L----AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
           L     + IV GF G       ITTLGRGGSD +A  +  ALG    +++ DVDGV T D
Sbjct: 122 LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTAD 180

Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
           P I P A+ +  +++DE  E+A  GA+VLHP+S+  A++  +P+RV +S++   PGTLI
Sbjct: 181 PRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE-PGTLI 238

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

 Score =  203 bits (518), Expect = 3e-62
 Identities = 98/298 (32%), Positives = 148/298 (49%), Gaps = 19/298 (6%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK------LLLAGEKAVSC 137
           V+KFGGSSLASAE+ ++V  ++ + P  R ++V+SA GK          LL+   +AV  
Sbjct: 3   VVKFGGSSLASAEQFQKVKAIVKADPE-RKIVVVSAPGKRFKDDTKVTDLLILYAEAV-- 59

Query: 138 GVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
            +           + D +    DELG+  SI+    E LE L               D L
Sbjct: 60  -LAGEDTESIFEAIVDRYAEIADELGLPMSILEEIAEILENLANL---DYANPDYLLDAL 115

Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
            + GE ++ ++ AAYLN  G+ AR     D G + TD+  NA IL  +Y  + K      
Sbjct: 116 KARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKK-----L 170

Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
                  ++ GF G + +   I T  RGGSD+T   + +       + + DVDG+   +P
Sbjct: 171 RDSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANP 229

Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
            I  + KP+  +T+ E  EL+Y G  V H +++ PA E  IP+ +KN+ +P APGTLI
Sbjct: 230 RIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLI 287

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score =  199 bits (508), Expect = 3e-61
 Identities = 99/302 (32%), Positives = 134/302 (44%), Gaps = 64/302 (21%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V+KFGGSS++S ER+R +A +++   +E  R V+V  A  + T++LL  GE         
Sbjct: 1   VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL------- 53

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
                                                   G A    +T R  D L + G
Sbjct: 54  ----------------------------------------GYARGLRITDRETDALAAMG 73

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
           E MS  + AA L + G+KA   D    GF + +      I          RL        
Sbjct: 74  EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKI----TKVSTDRLKSLLENG- 128

Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
            +PI++GF G   +     TLGRGGSD TA  +  AL    + +  DVDGV T DP   P
Sbjct: 129 ILPILSGFGGTDEK--ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVP 186

Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN--------PNAPGT 373
            AK +  LT++EAAELAY GA VL P++  PA    IPVR+ N+ N        P+  GT
Sbjct: 187 DAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALALFTPDGGGT 246

Query: 374 LI 375
           LI
Sbjct: 247 LI 248

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score =  197 bits (503), Expect = 1e-58
 Identities = 106/357 (29%), Positives = 175/357 (49%), Gaps = 73/357 (20%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGK-----TTNKLLLAGEKAVS 136
           V KFGG+S+++ ER +     I     E  + V+V+SAMG+      T+ LL        
Sbjct: 5   VQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLL-------- 56

Query: 137 CGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
                       S V +                                  E++ R +D 
Sbjct: 57  ------------SLVGEEF-------------------------------SEISKREQDL 73

Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
           L+S GE +S+ +F+  LN+ G+KA        G IT D+FTNA I+E        R+  +
Sbjct: 74  LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVN----PDRIL-E 128

Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
            + +  + +V GF G       ITTLGRGGSD TA  +G AL  + + ++ DVDG++T D
Sbjct: 129 ALEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTAD 187

Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI- 375
           P I   A+ +  ++++E  ++AY GA+V+HP+++  A + +IP+R++++Y+ ++PGTLI 
Sbjct: 188 PRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYS-DSPGTLIT 246

Query: 376 -----RRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
                +   D+ + ++T I    NVT + + +      Y    +VF    + GISVD
Sbjct: 247 SLGDAKGGIDVEERLITGIAHVSNVTQIKVKAKE--NAYDLQQEVFKALAEAGISVD 301

Length = 403

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score =  182 bits (463), Expect = 1e-54
 Identities = 86/294 (29%), Positives = 150/294 (51%), Gaps = 55/294 (18%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V KFGG+S+++ ER  +VA+ +    +E  +PV+V+SAMG                    
Sbjct: 3   VQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMG-------------------- 42

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
                          R  D    D          L  L+       +++PR  D L+S G
Sbjct: 43  ---------------RKGDPYATD---------TLINLVYAEN--SDISPRELDLLMSCG 76

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
           E +S  +  + L   G+KA        G +T D+++NA I++     V  +     + + 
Sbjct: 77  EIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIK-----VNPKKILSALKEG 131

Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
            + +V GF G       +TTLGRGGSD TA  +G AL  + ++++ DVDG++T DP + P
Sbjct: 132 DVVVVAGFQG-VTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVP 190

Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
           +A+ +  ++++E  ++A+ GA+V+HP+++  A + +IP+R++++ + N PGTLI
Sbjct: 191 NARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN-PGTLI 243

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

 Score =  168 bits (428), Expect = 5e-49
 Identities = 97/301 (32%), Positives = 158/301 (52%), Gaps = 18/301 (5%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V+KFGG+S++S  R   +A+L     N   +P+IV SA+   +NKL    ++A+     +
Sbjct: 3   VLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHS 62

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRS-IIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
                  + ++  H    ++L +D   ++A  L +L++ L GI++LK+ +PR+R  +++ 
Sbjct: 63  -----LFNAIQSRHLNLAEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLAL 117

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD--WI 258
           GE MSTR+ AAYL   G+K +  DA ++    T              A  +  + D    
Sbjct: 118 GELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGGET--MNYLSARCESEYADALLQ 174

Query: 259 TDLA----IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
             LA    + I  GF+ +         LGRGGSD +A      L     ++W DV G+ T
Sbjct: 175 KRLADGAQLIITQGFIARNAHG-ETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFT 233

Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
            +P+  PHA+ +  L +DEA E+A  GA+VLHP+ + PAR  +IP+ V+++  P   GTL
Sbjct: 234 ANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTL 293

Query: 375 I 375
           I
Sbjct: 294 I 294

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295

>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

 Score =  160 bits (406), Expect = 2e-42
 Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 32/326 (9%)

Query: 86  KFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCI 145
           KFGGSSLA A+  R VA ++  +     ++V+SA GKTTN+L+   + + +  ++     
Sbjct: 16  KFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQTDRLSAHQVQ 75

Query: 146 DEL-SFVKDLHHRTVDEL---GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
             L  + +DL    ++ L      RS+++  + +LE+L   +     +       +V  G
Sbjct: 76  QTLRRYQQDL----IEGLLPAEQARSLLSRLISDLERLAALLD--GGINDAQYAEVVGHG 129

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEA-TYPAVAKRL--HGDWI 258
           E  S R+ AA LN+ G+ A   DA    F+  +      + E  +YP + + L  H    
Sbjct: 130 EVWSARLMAALLNQQGLPAAWLDARS--FLRAERAAQPQVDEGLSYPLLQQLLAQHPGKR 187

Query: 259 TDLAIPIVTGFLGK--AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
                 +VTGF+ +  A  T     LGR GSD +AT IG   G++ + +W DV GV + D
Sbjct: 188 L-----VVTGFISRNEAGETV---LLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSAD 239

Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
           P     A  +P L  DEA+ELA   A VLH ++++P    DI ++++ SY P    T I 
Sbjct: 240 PRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIE 299

Query: 377 RSRDMSKAVLTSIVLKRNVTMLDIVS 402
           R       VL S    R VT LD V 
Sbjct: 300 R-------VLASGTGARIVTSLDDVC 318

Length = 810

>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated

 Score =  151 bits (383), Expect = 7e-42
 Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 30/282 (10%)

Query: 84  VMKFGGSSLASAERMREVAELILS-FPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
           V+KFGGSS+       E  EL+         V+V+SA+   T+KLL   E      +  I
Sbjct: 7   VVKFGGSSVRYD--FEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETFDKEALEEI 64

Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRS-RDYLVSFG 201
                     ++H      LGID  I++ +L++L           +L   + RDY++SFG
Sbjct: 65  E---------EIHEEFAKRLGIDLEILSPYLKKL------FNSRPDLPSEALRDYILSFG 109

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI-LEATYPAVAKRLHGDWITD 260
           E +S  +FA  L   G+K +  D ++I       F NA I ++ +   V K L  + +  
Sbjct: 110 ERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDIKKSKRNV-KIL-YELLER 166

Query: 261 LAIPIVTGFLG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
             +P+V GF+G    +R     TLGRGGSD +A  +G  L  + + +  DV+G+ T DP 
Sbjct: 167 GRVPVVPGFIGNLNGFRA----TLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222

Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360
           + P A+ +PYL++DEA   A  G + LH +++ P  +G IP+
Sbjct: 223 LVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPV-KGKIPI 263

Length = 341

>gnl|CDD|239780 cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

 Score =  149 bits (377), Expect = 2e-41
 Identities = 97/308 (31%), Positives = 155/308 (50%), Gaps = 24/308 (7%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE-RPVIVLSAMGK------TTNKLLLAGEKAVS 136
           V KFGG+S+          +++ ++    +  +V SA         TTN+LL A ++A+ 
Sbjct: 4   VQKFGGTSVGKFP-DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALD 62

Query: 137 CGVTNISCIDELSFVKDLHHRTVDELGIDRSI-------IATHLEELEQLLKGIAMLKEL 189
                   I E   ++  H     +   +  +       I    E L + L+   +L E+
Sbjct: 63  AQEKAFHDIVED--IRSDHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEI 120

Query: 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAV 249
           +PR++D ++S GE +S R  AA L   GV A      D+  I   DF+   + +  Y  +
Sbjct: 121 SPRTKDLVISTGEKLSCRFMAAVLRDRGVDAE---YVDLSHIVDLDFSIEALDQTFYDEL 177

Query: 250 AKRLHGDWITDLA--IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307
           A+ L G+ IT     +P+VTGF G       ++ +GRG +DL A      L   E+Q+WK
Sbjct: 178 AQVL-GEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQIWK 235

Query: 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN 367
           +VDG+ T DP   P A+ +P +T +EAAEL Y+G++V+HP +M    +  IP+R+KN  N
Sbjct: 236 EVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVEN 295

Query: 368 PNAPGTLI 375
           P   GT+I
Sbjct: 296 PRGEGTVI 303

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Length = 306

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score =  148 bits (375), Expect = 3e-40
 Identities = 100/323 (30%), Positives = 148/323 (45%), Gaps = 70/323 (21%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V KFGG+S+ S ER++ VAE I+   N+  + V+V+SAM   TN+LL             
Sbjct: 5   VQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLL------------- 51

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
                       L  + VD +                           T R  D L+S G
Sbjct: 52  -----------GLAKQ-VDSVP--------------------------TARELDVLLSAG 73

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
           E +S  + A  LNK+G  AR         +T +   +A I         K +    IT+L
Sbjct: 74  EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATI---------KHIDTSTITEL 124

Query: 262 A----IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
                I IV GF G+      ITTLGRGGSD TA  +  AL   E Q++ DVDGV TCDP
Sbjct: 125 LEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183

Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
            +  +A+ +  + F     +A  GA+VLH  S++ A +  +P+RV +S+     GTLI+ 
Sbjct: 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVGE-GTLIKG 242

Query: 378 SRDMSKAVLTSIVLKRNVTMLDI 400
                   +  I L+R++ ++++
Sbjct: 243 EAGTQA--VCGIALQRDLALIEV 263

Length = 392

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score =  142 bits (359), Expect = 1e-39
 Identities = 84/289 (29%), Positives = 120/289 (41%), Gaps = 66/289 (22%)

Query: 82  TCVMKFGGSSLASAERMREVAELILSFPNE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVT 140
             V+K GGSSL   + ++ +AE I         V+V+S  G  T+KLL A          
Sbjct: 2   RIVIKLGGSSLTDKDEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAG---- 57

Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
                         H      L ++  + A                          +VS 
Sbjct: 58  -----------FVRHTAGATGLVLEAQLAAELN---------------------RIVVSL 85

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
           GE +  R  A  L+  G+ A + D  D   I        ++LEA                
Sbjct: 86  GERLGARAVALLLSDGGLPAVRLDLVDTEAI-------KELLEAGV-------------- 124

Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
             +P++TGF G+   T   TTLGRG SD  A  + +ALG  ++ +  DVDGV T DP  +
Sbjct: 125 --VPVITGFGGEN-DTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKN 181

Query: 321 PHAKPVPYLTFDEAAELA-----YFGAQVLHPQSMRPAREGDIPVRVKN 364
           P AK +P L++DEA EL        G +V HP +++ AR G IPV + N
Sbjct: 182 PDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score =  141 bits (359), Expect = 8e-37
 Identities = 104/358 (29%), Positives = 163/358 (45%), Gaps = 72/358 (20%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V KFGG+S+ S ER++ VA+ I          V+V+SAMGKTT                 
Sbjct: 5   VQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTT----------------- 47

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
                                           +EL +L K I+       R  D L+S G
Sbjct: 48  --------------------------------DELVKLAKEIS--SNPPRREMDMLLSTG 73

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
           E +S  + +  L+++G  A       +G +T  +   A ILE     + + L    +   
Sbjct: 74  EQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVV-- 131

Query: 262 AIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
              +V GF G        ITTLGRGGSD +A  +  ALG    +++ DV GVLT DP + 
Sbjct: 132 ---VVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLV 188

Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI--RRS 378
           P A+ +  ++ DE  ELA  GA VLHP+++  AR   +P+ V++S++ +APGTL+     
Sbjct: 189 PEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-DAPGTLVTSPPP 247

Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTR----MLG---QYGFLAKVFSTFEDLGISVDVV 429
           R  S   L  + L + V  +++   +    +L    + G  A++F      G++VD++
Sbjct: 248 RPRS---LGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQGVNVDLI 302

Length = 587

>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative

 Score =  131 bits (331), Expect = 1e-34
 Identities = 90/281 (32%), Positives = 139/281 (49%), Gaps = 33/281 (11%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVL-SAMGKTTNKLLLAGEKAVSCGVTNI 142
           V+KFGGSS+  A    E  EL+ S   E+ VIV+ SA+   T+ L+             I
Sbjct: 3   VVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTFDKSAALEI 60

Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRS-RDYLVSFG 201
                     +++     ELG+D +I++ +L+EL           +L   + RDY++S G
Sbjct: 61  E---------EIYEEFAKELGVDLNILSPYLKELFNP-------PDLPKEALRDYILSLG 104

Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA--DILEATYPAVAKRLHGDWIT 259
           E +S  IFA      G+  +  D +DI F    DF NA  DI ++   A  K L+ + + 
Sbjct: 105 ERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAFIDIKKSKRNA--KILY-EVLE 155

Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
              IP++ GF G         TLGRGGSD +A  +G  L  + + +  DV+G+ T DP +
Sbjct: 156 SGKIPVIPGFYGN--LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213

Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360
            P A+ +PYL+++E    A  G + L  ++   A+E  IPV
Sbjct: 214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPV 254

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327

>gnl|CDD|235646 PRK05925, PRK05925, aspartate kinase; Provisional

 Score =  132 bits (333), Expect = 4e-34
 Identities = 109/382 (28%), Positives = 179/382 (46%), Gaps = 35/382 (9%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERP-VIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
           V KFGG+SL +AE +R V ++I     E+P  +V+SA+   T+ L         C ++  
Sbjct: 5   VYKFGGTSLGTAESIRRVCDIICK---EKPSFVVVSAVAGVTDLLEEF------CRLSKG 55

Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGE 202
                   +++ H     ELGI+ S+ +   E LE         +E++   +  +++ GE
Sbjct: 56  KREALTEKIREKHEEIAKELGIEFSL-SPWWERLEHFEDV----EEISSEDQARILAIGE 110

Query: 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW----I 258
            +S  +  AY     +     +A  +  I TDD      L A  P +A  +   W    +
Sbjct: 111 DISASLICAYCCTYVLPLEFLEARQV--ILTDD----QYLRAV-PDLA-LMQTAWHELAL 162

Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
            + AI I+ GF+G A  +   T LGRGGSD +A+ I +    +E++++ DV+G+ T DP 
Sbjct: 163 QEDAIYIMQGFIG-ANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPK 221

Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
           I   A+ +P L+F+E   LA FGA+VLHP  ++P     IP+ V ++++    GT I  S
Sbjct: 222 IIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYAS 281

Query: 379 RDMS--KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
                 +  + ++ LK+N   L  V    LG    L  V      LGI   +V    + +
Sbjct: 282 DKEVSYEPRIKALSLKQN-QALWSVDYNSLGLVR-LEDVLGILRSLGIVPGLVMAQNLGV 339

Query: 437 SLTLDPSKLWS---RELIQQAS 455
             T+D   +     + L    S
Sbjct: 340 YFTIDDDDISEEYPQHLTDALS 361

Length = 440

>gnl|CDD|153205 cd04933, ACT_AK1-AT_1, ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

 Score =  118 bits (298), Expect = 7e-33
 Identities = 55/59 (93%), Positives = 56/59 (94%)

Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ 453
           VTMLDI STRMLGQYGFLAKVFS FE LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ
Sbjct: 1   VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSEVSISLTLDPSKLWSRELIQQ 59

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 78

>gnl|CDD|153184 cd04912, ACT_AKiii-LysC-EC-like_1, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 89.6 bits (223), Expect = 3e-22
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQA 454
           +T+L+I S RMLG +GFLAKVF  F   G+SVD+++TSEVS+SLTLDP+K  S +L+  A
Sbjct: 1   ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSEVSVSLTLDPTKNLSDQLLLDA 60

Query: 455 SV 456
            V
Sbjct: 61  LV 62

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|239781 cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

 Score = 81.3 bits (201), Expect = 4e-17
 Identities = 84/323 (26%), Positives = 141/323 (43%), Gaps = 53/323 (16%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNER---PVIVLSAMGKTTNKLLLAGEKAVSCGV- 139
           V K GG+S++       V + I+  P+      V V+SA    TN  LL  +K  + G+ 
Sbjct: 3   VEKIGGTSMS---AFGAVLDNIILKPDSDLYGRVFVVSAYSGVTN-ALLEHKKTGAPGIY 58

Query: 140 -----TNISCIDELSFVKD-LH--HRTVDELGIDR----SIIATHLEELEQLLKGIAM-- 185
                 + +  + LS +K  +   +    ++G+D     + I   +++    L  +A   
Sbjct: 59  QHFVDADEAWREALSALKQAMLKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLC 118

Query: 186 ------LKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239
                 L E    +R+ L S GE  S    A  L   GV AR  D    G+  + D T  
Sbjct: 119 SSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDL--SGWRDSGDMTLD 176

Query: 240 DILEATYPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCA---ITTLGRGGSDLTATTI 294
           + +   +  +          D    +PIVTG+       CA   +    RG S++T + I
Sbjct: 177 ERISEAFRDI----------DPRDELPIVTGYAK-----CAEGLMREFDRGYSEMTFSRI 221

Query: 295 GKALGLQEIQVWKDVDGVLTCDPNI--HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRP 352
               G  E  + K+   + + DP +     A+P+    +D A +LA  G + +HP++ + 
Sbjct: 222 AVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKG 280

Query: 353 AREGDIPVRVKNSYNPNAPGTLI 375
            R+  IP+RVKN++ P+ PGTLI
Sbjct: 281 LRQAGIPLRVKNTFEPDHPGTLI 303

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Length = 304

>gnl|CDD|153162 cd04890, ACT_AK-like_1, ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 69.9 bits (172), Expect = 2e-15
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445
           T ++I    M G+ GFL K+F   E  GISVD++ TSE S++L LD S L
Sbjct: 1   TAIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSENSVTLYLDDSLL 50

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 62

>gnl|CDD|236396 PRK09181, PRK09181, aspartate kinase; Validated

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 90/377 (23%), Positives = 152/377 (40%), Gaps = 56/377 (14%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPN--ERP---VIVLSAMGKTTNKLLLAGEKAVSCG 138
           V K GG+S++       V + I+  P   E     + V+SA G  T+  LL  +K    G
Sbjct: 6   VEKIGGTSMS---AFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTD-ALLEHKKTGEPG 61

Query: 139 V-------TNISCIDELSFVKD---LHHRTVDELGIDRS----IIATHLEELEQLLKGIA 184
           V        + +  + L  V+      +  +   G+D +     I   +EE    L  + 
Sbjct: 62  VYALFAKANDEAWREALEAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQ 121

Query: 185 --------MLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236
                    L E     R+ L S GE  S    A  L   GV AR  D    G+   D  
Sbjct: 122 RLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDL--TGWDDDDPL 179

Query: 237 TNADILEATYPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCA---ITTLGRGGSDLTA 291
           T  + ++  +  +          D+   +PIVTG+       C    + T  RG S++T 
Sbjct: 180 TLDERIKKAFKDI----------DVTKELPIVTGYAK-----CKEGLMRTFDRGYSEMTF 224

Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNI--HPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
           + I    G  E  + K+   + + DP +       P+    +D A +LA  G + +HP++
Sbjct: 225 SRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKA 283

Query: 350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
            +  R+  IP+R+KN++ P  PGTLI +     +  +  I     V  L++    M+G+ 
Sbjct: 284 AKGLRQAGIPLRIKNTFEPEHPGTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGED 343

Query: 410 GFLAKVFSTFEDLGISV 426
           G+  ++        +S 
Sbjct: 344 GYDLEILEILTRHKVSY 360

Length = 475

>gnl|CDD|153204 cd04932, ACT_AKiii-LysC-EC_1, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQAS 455
           T++ + S  ML   GFLAKVF       ISVD++ TSE+S++LTLD +   S +L+ QA 
Sbjct: 2   TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSEISVALTLDNTGSTSDQLLTQAL 61

Query: 456 V 456
           +
Sbjct: 62  L 62

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKL 445
             + IV   M G  G  AK+FS   + GI+VD+++ S  EV++S T+D S L
Sbjct: 1   AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDL 52

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60

>gnl|CDD|153207 cd04935, ACT_AKiii-DAPDC_1, ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 20/49 (40%), Positives = 35/49 (71%)

Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPS 443
           + ++ + +  M  Q GFLA VF+ F+  G+SVD+V+TSE +++++LDP 
Sbjct: 1   IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPD 49

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
             VDGV   DP  +P+AK   +LT+DE       G +V+   +    R+ ++P+ V   +
Sbjct: 156 TKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMDATAFTLCRDNNLPIVV---F 209

Query: 367 NPNAPGTLIR 376
           N N PG L++
Sbjct: 210 NINEPGNLLK 219

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
            +VDGV   DP  +P AK    +++DE  +    G +V+   ++   R   IP+ V   +
Sbjct: 154 TNVDGVYDADPKKNPDAKKYDRISYDELLKK---GLKVMDATALTLCRRNKIPIIV---F 207

Query: 367 NPNAPGTLIR 376
           N   PG L+R
Sbjct: 208 NGLKPGNLLR 217

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
             VDGV   DP   P AK    LT+DE  ++     +V+ P +   AR+  IP+ V   +
Sbjct: 162 NKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGL---KVMDPTAFSLARDNGIPIIV---F 215

Query: 367 NPNAPGTLIR 376
           N N PG L R
Sbjct: 216 NINKPGNLKR 225

Length = 238

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score = 44.7 bits (107), Expect = 3e-05
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
            +VDGV   DP   P AK    LT+DE  E      +V+   ++  AR+  IP+ V   +
Sbjct: 156 TNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKIPIIV---F 209

Query: 367 NPNAPGTLIR 376
           N N PG L R
Sbjct: 210 NMNKPGNLKR 219

Length = 231

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
            +VDGV T DP  +  AK    +T++EA +      +V+   +   AR+ ++P+ V   +
Sbjct: 157 TNVDGVYTADPKKNKDAKKYDTITYNEALKK---NLKVMDLTAFALARDNNLPIVV---F 210

Query: 367 NPNAPGTLIR 376
           N + PG L +
Sbjct: 211 NIDKPGALKK 220

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|153206 cd04934, ACT_AK-Hom3_1, CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 16/46 (34%), Positives = 32/46 (69%)

Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTL 440
           + +++I S +    +GFLA++F+  +   +SVD+++TSEV +S+ L
Sbjct: 1   ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTSEVHVSMAL 46

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153195 cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 400 IVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
           IV   M    G  AK+F    + GI++++++TSE+ +S
Sbjct: 5   IVGAGMRSHPGVAAKMFKALAEAGINIEMISTSEIKIS 42

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63

>gnl|CDD|153208 cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 400 IVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLD 441
           IV   M    G  AK+F    + GI++++++TSE+ +S  +D
Sbjct: 5   IVGAGMRSHPGVAAKMFEALAEAGINIEMISTSEIKISCLID 46

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the AKs of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single AKs found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis strain 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans AKs are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the second ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the second ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria AKs are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the second and fourth cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 14/68 (20%), Positives = 35/68 (51%)

Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE 433
            +R   +    +L  + ++  + ++ IV   M    G  A++F    +  I++ ++++SE
Sbjct: 362 ALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSE 421

Query: 434 VSLSLTLD 441
           +S+S  +D
Sbjct: 422 ISISFVVD 429

Length = 447

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 19/53 (35%), Positives = 34/53 (64%)

Query: 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLD 441
           ++++ NV  L I    M+G+ G  AK+F T  + GI++ +++TSEV +S  +D
Sbjct: 342 VLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVID 394

Length = 587

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	100.0
PLN02551	521	aspartokinase	100.0
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	100.0
PRK09084	448	aspartate kinase III; Validated	100.0
PRK09034	454	aspartate kinase; Reviewed	100.0
PRK06291	465	aspartate kinase; Provisional	100.0
PRK09181	475	aspartate kinase; Validated	100.0
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	100.0
PRK05925	440	aspartate kinase; Provisional	100.0
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	100.0
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	100.0
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	100.0
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	100.0
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	100.0
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	100.0
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	100.0
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	100.0
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	100.0
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	100.0
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	100.0
PRK08841	392	aspartate kinase; Validated	100.0
PRK08373	341	aspartate kinase; Validated	100.0
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	100.0
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	100.0
PRK08210	403	aspartate kinase I; Reviewed	100.0
PRK06635	404	aspartate kinase; Reviewed	100.0
PRK07431	587	aspartate kinase; Provisional	100.0
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	100.0
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	100.0
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	100.0
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	100.0
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	100.0
PRK12314	266	gamma-glutamyl kinase; Provisional	100.0
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.98
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	99.97
PRK14557	247	pyrH uridylate kinase; Provisional	99.97
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	99.97
PRK00358	231	pyrH uridylate kinase; Provisional	99.97
PRK14558	231	pyrH uridylate kinase; Provisional	99.97
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	99.97
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	99.96
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	99.95
PRK13402	368	gamma-glutamyl kinase; Provisional	99.95
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	99.95
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.94
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.94
PRK05429	372	gamma-glutamyl kinase; Provisional	99.94
PRK00942	283	acetylglutamate kinase; Provisional	99.94
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.94
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	99.93
PRK14556	249	pyrH uridylate kinase; Provisional	99.93
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.93
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.92
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.92
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	99.92
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	99.9
PLN02512	309	acetylglutamate kinase	99.89
CHL00202	284	argB acetylglutamate kinase; Provisional	99.88
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.87
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	99.87
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.86
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	99.85
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.84
PTZ00489	264	glutamate 5-kinase; Provisional	99.82
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	99.82
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.74
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.7
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.7
PRK05279	441	N-acetylglutamate synthase; Validated	99.69
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.69
PRK12353	314	putative amino acid kinase; Reviewed	99.68
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.66
PLN02825	515	amino-acid N-acetyltransferase	99.63
PRK12352	316	putative carbamate kinase; Reviewed	99.62
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.6
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.56
COG1608	252	Predicted archaeal kinase [General function predic	99.51
PRK12686	312	carbamate kinase; Reviewed	99.48
PRK04531	398	acetylglutamate kinase; Provisional	99.41
PRK12354	307	carbamate kinase; Reviewed	99.41
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.38
KOG1154	285	consensus Gamma-glutamyl kinase [Amino acid transp	99.33
PRK09411	297	carbamate kinase; Reviewed	99.19
COG2054	212	Uncharacterized archaeal kinase related to asparto	98.89
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	98.83
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	98.75
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	98.69
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	98.61
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	98.6
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	98.58
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	98.57
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	98.55
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	98.5
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	98.48
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	98.42
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	98.33
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	98.33
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	98.32
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	98.31
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	98.3
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	98.28
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	98.28
cd04920	63	ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK	98.22
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	98.2
PRK06635	404	aspartate kinase; Reviewed	98.11
PRK06291	465	aspartate kinase; Provisional	98.11
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	98.1
PLN02551	521	aspartokinase	98.04
PRK07431	587	aspartate kinase; Provisional	98.04
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	98.01
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	98.01
PRK09034	454	aspartate kinase; Reviewed	97.99
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	97.97
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	97.93
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	97.9
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	97.86
cd04917	64	ACT_AKiii-LysC-EC_2 ACT domains located C-terminal	97.83
PRK05925	440	aspartate kinase; Provisional	97.75
PRK08210	403	aspartate kinase I; Reviewed	97.75
PRK09181	475	aspartate kinase; Validated	97.66
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	97.58
PRK08841	392	aspartate kinase; Validated	97.57
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	97.47
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	97.47
PRK09084	448	aspartate kinase III; Validated	97.37
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	97.29
cd04910	71	ACT_AK-Ectoine_1 ACT domains located C-terminal to	97.05
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	96.99
KOG2436	520	consensus Acetylglutamate kinase/acetylglutamate s	96.19
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	93.48
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	93.36
COG3830	90	ACT domain-containing protein [Signal transduction	91.24
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	90.52
PRK04435	147	hypothetical protein; Provisional	90.01
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	89.73
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	88.63
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	86.16
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	86.06
cd02116	60	ACT ACT domains are commonly involved in specifica	85.17
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	84.93
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	83.78
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	82.89
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	82.69
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	82.25
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	82.15
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.67
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	80.07

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-93  Score=707.32  Aligned_cols=449  Identities=71%  Similarity=1.022  Sum_probs=421.8

Q ss_pred             Cccccccccccccccc---ccccccccccccccccccccceecccCCCcccceeEEeecCcceeeeccccccccccccCC
Q 012808            2 ANTMQFSSIIQKNSLH---CQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESE   78 (456)
Q Consensus         2 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (456)
                      ++++|++|+.+++..-   -.+..+++.+|+.-.+++.+.++  .++||++ ++|++|+..++...+++.+++....+ +
T Consensus         1 ~a~~~~~~~~~~~l~l~~~r~~~~~~~~~f~~~~~~~~~~~~--~~s~~~i-~~~~~~~~~r~~l~~~k~~e~~~s~g-~   76 (559)
T KOG0456|consen    1 MASTQVYGVKTPRLALTSKRLEFSSKGVDFSTLKKSSLPIGR--GSSCRNI-SLRVSCEAVRVVLLERKNPETDPSNG-E   76 (559)
T ss_pred             CCceeEEeecCCCcccccccccccccCccchhhccccccccC--Cccceec-eeeeeeeeeeEeeecccCcccCccCC-C
Confidence            4689999997665442   25566778888887777764445  5667777 89999999999999999888855555 7


Q ss_pred             CcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        79 ~~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      +..|+|+|||||||++++++..++..+..+++++++||+|||+++|+.|+.+++++..|+..+.+..++++.|++.|++.
T Consensus        77 k~~~~V~KFGGsSV~s~~~~i~v~~l~~~~~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIke~Hi~t  156 (559)
T KOG0456|consen   77 KGLTCVMKFGGSSVGSAERMIEVAVLILYFPDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIKELHIRT  156 (559)
T ss_pred             cceEEEEecCCccccccchhhhhhHHHHhcCCCCeEEEEEccccchhhhhhhhhheecccccCcchHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                      +++|+.+...+.++++.|+++|+|+++++|.+++++|++++|||++|+++|+++|+..|+++.++|+.++++++.+++.+
T Consensus       157 a~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~  236 (559)
T KOG0456|consen  157 AHELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTN  236 (559)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN  318 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~  318 (456)
                      .++.+.+++.+.+.+...|..++.|||++||.|..++.|.++++||||||++|+.||.+||++++++|+|||||+|+||+
T Consensus       237 ~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~  316 (559)
T KOG0456|consen  237 DDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPR  316 (559)
T ss_pred             hhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCc
Confidence            99988899888887777788889999999999988889999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEEE
Q 012808          319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML  398 (456)
Q Consensus       319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nvalI  398 (456)
                      ++|.|+++|.++++||.||+|||++|+||-+++|+++.+|||||+|.+||.+|||.|++++++++...++|+.++|+.+|
T Consensus       317 ~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~m~k~~~TsI~lK~nv~ml  396 (559)
T KOG0456|consen  317 IYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRDMSKAGLTSIVLKRNVTML  396 (559)
T ss_pred             cCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchhhhhccceEEEEeccEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             EEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCcHHHHhhh
Q 012808          399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQA  454 (456)
Q Consensus       399 sv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~~~l~~~~  454 (456)
                      .|.+.+|.+..||++++|.+|+++||+||+|+|||++||++++.+++++|||||++
T Consensus       397 dI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~  452 (559)
T KOG0456|consen  397 DIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGE  452 (559)
T ss_pred             EecccchhhhhhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999863

>PLN02551 aspartokinase

Probab=100.00  E-value=7.3e-88  Score=716.39  Aligned_cols=411  Identities=82%  Similarity=1.210  Sum_probs=369.3

Q ss_pred             cccCCCcccceeEEeecCcceeeeccccccccccccCCCcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCC
Q 012808           41 SVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAM  120 (456)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~  120 (456)
                      +...++.+++.+++.|..+......+..++........+++++|+|||||||+|+++|++|+++|.+..+.++|||||||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVvSA~   91 (521)
T PLN02551         12 RSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGSSVASAERMREVADLILSFPDERPVVVLSAM   91 (521)
T ss_pred             ccccccchhHHHHhhhhhhhhHhhhhcccccccccccccCceEEEEECCCccCCHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            33344444457888887777655555555665566667779999999999999999999999999987666789999999


Q ss_pred             CcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhh
Q 012808          121 GKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF  200 (456)
Q Consensus       121 g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~  200 (456)
                      +|+||.|+++++.+..++..+.++.+.++.++++|..++++|+.+...+..++++|+++++++.++++++++.+|+|+|+
T Consensus        92 ~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~  171 (521)
T PLN02551         92 GKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSF  171 (521)
T ss_pred             CCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhH
Confidence            99999999998888765544455677899999999999999998888899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCcee
Q 012808          201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT  280 (456)
Q Consensus       201 GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vt  280 (456)
                      ||++|+.||+++|++.|+++.++|++++|++|++.|+++++.+.+++++.+.+...|...+.|||++||+|.++++|++|
T Consensus       172 GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~t  251 (521)
T PLN02551        172 GERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAIT  251 (521)
T ss_pred             HHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEE
Confidence            99999999999999999999999999999999999999998877888887777655555678999999999982389999


Q ss_pred             eccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCE
Q 012808          281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV  360 (456)
Q Consensus       281 tlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv  360 (456)
                      |||||||||||+++|.+|+|++++||||||||||+|||++|+|++|++|||+||.||++|||+||||+|++||++++|||
T Consensus       252 tLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi  331 (521)
T PLN02551        252 TLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV  331 (521)
T ss_pred             ecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCceEEeeccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEE
Q 012808          361 RVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTL  440 (456)
Q Consensus       361 ~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V  440 (456)
                      +|+|+|+|+.+||+|+...++.+..|++|+.++|+++|+|.+.+|.+.+||++++|+.|+++||+|+||++|+.+|+|++
T Consensus       332 ~vknt~~p~~~GT~I~~~~~~~~~~v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v  411 (521)
T PLN02551        332 RVKNSYNPTAPGTLITKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSISLTL  411 (521)
T ss_pred             EEEecCCCCCCCcEEecccccCCCcccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEeccCCEEEEEE
Confidence            99999999999999987655455579999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCcHHHH
Q 012808          441 DPSKLWSRELI  451 (456)
Q Consensus       441 ~~~d~~~~~l~  451 (456)
                      +.++++.++.+
T Consensus       412 ~~~~~~~~~~i  422 (521)
T PLN02551        412 DPSKLWSRELI  422 (521)
T ss_pred             ehhHhhhhhhH
Confidence            99987664333

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=100.00  E-value=5.5e-78  Score=629.17  Aligned_cols=351  Identities=40%  Similarity=0.652  Sum_probs=309.8

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCCC--CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~--~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      |+|+|||||||+|+++|++++++|++..+  .++|||+||||++||.|+++++.+.....     ...    .++|...+
T Consensus         3 ~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~-----~~~----~~~~~~~~   73 (447)
T COG0527           3 LIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD-----AVA----EQRHRDIA   73 (447)
T ss_pred             eEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccc-----hhH----HHHHHHHH
Confidence            78999999999999999999999998653  57889999999999999999876543221     111    55666676


Q ss_pred             HHhCCCHH---HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC
Q 012808          160 DELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF  236 (456)
Q Consensus       160 ~~l~~~~~---~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~  236 (456)
                      .++..+..   .+.....++++.+.++....+.+++.+|+|+|+||++|+.||+++|+++|++|.+++++++++.+++.|
T Consensus        74 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~  153 (447)
T COG0527          74 SELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNH  153 (447)
T ss_pred             HHHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcc
Confidence            66665442   233334444677888889999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeecchHH-HHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccC
Q 012808          237 TNADILEATYPA-VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC  315 (456)
Q Consensus       237 ~~a~i~~~~~~~-i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta  315 (456)
                      +++++....+.+ +.+     +++.+.|||++||+|.+ ++|+++|||||||||||++||++|+|++|.||||||||||+
T Consensus       154 ~~a~i~~~~~~~~l~~-----~~~~~~v~Vv~GF~G~~-~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~Ta  227 (447)
T COG0527         154 GNARILDEDSERRLLR-----LLEEGKVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTA  227 (447)
T ss_pred             cccccchhhhhhhHHH-----HhcCCcEEEecCceeec-CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccC
Confidence            999887655544 322     35678999999999999 58999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCe
Q 012808          316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNV  395 (456)
Q Consensus       316 DP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nv  395 (456)
                      |||++|+|++|++|||+||+||+++|||||||+|++|+++++||++|+|+++|+.+||+|.++.......+++|+.++|+
T Consensus       228 DPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~~~~v~gIa~~~~~  307 (447)
T COG0527         228 DPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAETESDEPVVKGIALDDNV  307 (447)
T ss_pred             CCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCCCCceEEecCCcCCCCceEEEEeCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999998864434689999999999


Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC--CCEEEEEEcCCCcCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKLWS  447 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS--e~sIsi~V~~~d~~~  447 (456)
                      ++|++.+..|.+.+|+++++|.+|+++||+|+||.++  +.+|+|+++.++...
T Consensus       308 ~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~  361 (447)
T COG0527         308 ALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPR  361 (447)
T ss_pred             EEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHH
Confidence            9999999999999999999999999999999999755  899999999888644

>PRK09084 aspartate kinase III; Validated

Probab=100.00  E-value=1.4e-75  Score=615.46  Aligned_cols=353  Identities=37%  Similarity=0.540  Sum_probs=319.1

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE  161 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  161 (456)
                      |+|+|||||||+|++++++|+++|++. +.+++||||||+|+||.|+++++.+..+    .++.+.++.++++|..++++
T Consensus         1 m~V~KFGGtSv~~~e~i~~v~~ii~~~-~~~~vvVVSA~~~~Td~L~~~~~~~~~~----~~~~~~~~~i~~~h~~~~~~   75 (448)
T PRK09084          1 LVVAKFGGTSVADFDAMNRSADIVLSN-PNTRLVVLSASAGVTNLLVALAEGAEPG----DERLALLDEIRQIQYAILDR   75 (448)
T ss_pred             CEEEEECccCcCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCchHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999873 4678999999999999999988776542    45777899999999999999


Q ss_pred             hCCCH---HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          162 LGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       162 l~~~~---~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                      |..+.   ..+++++++|+++++++..  +.+++.+|+|+|+||++|+.+++++|+++|+++.++|++++ ++|+++|++
T Consensus        76 l~~~~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~~~  152 (448)
T PRK09084         76 LGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGR  152 (448)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHhhhh--cCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCCCc
Confidence            97654   3588899999999998866  77889999999999999999999999999999999999998 899999999


Q ss_pred             cceeecch-HHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808          239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP  317 (456)
Q Consensus       239 a~i~~~~~-~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP  317 (456)
                      ++++.... ..+.+.+.+ +++.+ |||++||+|.+ .+|.++|||||||||+|+++|.+|+|+++++|||||||||+||
T Consensus       153 ~~~~~~~~~~~~~~~~~~-~~~~~-v~Vv~Gf~g~~-~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP  229 (448)
T PRK09084        153 AEPDVAALAELAQEQLLP-LLAEG-VVVTQGFIGSD-EKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP  229 (448)
T ss_pred             ccccHHHHHHHHHHHHHH-hhcCC-cEEecCeeecC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence            88754322 233333333 34566 99999999998 6999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEE
Q 012808          318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM  397 (456)
Q Consensus       318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nval  397 (456)
                      +++|+|+++++|||+||.||+++|++++||++++|+++++||++|+|+++|+.+||+|..... ....|++|+.++|+++
T Consensus       230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~-~~~~v~~it~~~~i~l  308 (448)
T PRK09084        230 RIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE-NPPLFRAIALRRNQTL  308 (448)
T ss_pred             CCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC-CCCeeEEEEeeCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999987543 2347999999999999


Q ss_pred             EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      |+|.+.+|.+.+|+++++|+.|+++||+|+||++|+.+|||+|++++..
T Consensus       309 Itv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~sse~sIs~~i~~~~~~  357 (448)
T PRK09084        309 LTLHSLNMLHARGFLAEVFGILARHKISVDLITTSEVSVSLTLDTTGST  357 (448)
T ss_pred             EEEecCCCCccccHHHHHHHHHHHcCCeEEEEeccCcEEEEEEechhhh
Confidence            9999999999999999999999999999999999999999999988753

>PRK09034 aspartate kinase; Reviewed

Probab=100.00  E-value=1.6e-75  Score=616.19  Aligned_cols=352  Identities=33%  Similarity=0.477  Sum_probs=317.3

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------CchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVKDL  154 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~-------vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~  154 (456)
                      |+|+|||||||+|++++++|+++|++. .++++||||||+|       +||.|+++++.+.+.    .++.+.++.++++
T Consensus         1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~----~~~~~~~~~~~~~   75 (454)
T PRK09034          1 MKVVKFGGSSLASAEQFKKVLNIVKSD-PERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAG----EDYEDIFEAIIAR   75 (454)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHhcc-CCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcC----CcHHHHHHHHHHH
Confidence            689999999999999999999999965 4578999999986       999999988776542    3567789999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808          155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD  234 (456)
Q Consensus       155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~  234 (456)
                      |..++++|+.+...+++..++|+++...+   .+.+++.+|+|+|+||++|+.+|+++|+++|+++.++|++++|++|++
T Consensus        76 ~~~~~~~L~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~  152 (454)
T PRK09034         76 YAEIAKELGLDADILEKIEEILEHLANLA---SRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTD  152 (454)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecC
Confidence            99999999887776677777777776543   467889999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808          235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT  314 (456)
Q Consensus       235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t  314 (456)
                      .|+++.+...++.++.+.     ...+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|++++||||||||||
T Consensus       153 ~~~~a~i~~~~~~~~~~~-----~~~~~v~Vv~GFig~~-~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~t  226 (454)
T PRK09034        153 EPGNAQVLPESYDNLKKL-----RDRDEKLVIPGFFGVT-KDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYA  226 (454)
T ss_pred             CcCceeEcHhhHHHHHHH-----HhcCCEEEecCccccC-CCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCc
Confidence            999998866565554432     2356799999999999 5999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc-ceeeEEEEec
Q 012808          315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK-AVLTSIVLKR  393 (456)
Q Consensus       315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~-~~i~~I~~~~  393 (456)
                      +|||++|+|+++++|||+||.||+++|++||||+|++||++++|||+|+|+++|+++||+|+...+... ..|++|+.++
T Consensus       227 aDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~~~~~Vk~It~~~  306 (454)
T PRK09034        227 ANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNKNKNPITGIAGDK  306 (454)
T ss_pred             CCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccCccccceEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999987643322 4799999999


Q ss_pred             CeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       394 nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      |+++|++.+.+|.+.+|+++++|+.|+++||+|+|+++|+.+|||+|+++++..
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ss~~sis~~v~~~~~~~  360 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDLSIIIRERQLTP  360 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEcCCCcEEEEEEeHHHhhH
Confidence            999999999999999999999999999999999999999999999999887643

>PRK06291 aspartate kinase; Provisional

Probab=100.00  E-value=3e-73  Score=600.94  Aligned_cols=364  Identities=42%  Similarity=0.691  Sum_probs=329.9

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      |++|+|||||||+|++++++++++|++.  .+.+++||||||+|+||.|+++++.+... ...+++.+.++.++++|..+
T Consensus         1 ~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~   79 (465)
T PRK06291          1 MRLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDV-RDIAKVKDFIADLRERHYKA   79 (465)
T ss_pred             CcEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999964  34578999999999999999988765431 11245777899999999999


Q ss_pred             HHHhCCCH-------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          159 VDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       159 ~~~l~~~~-------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                      +++|..++       ..++.++++|+++++++..+++++++.+|+|+++||++|+.|++++|++.|+++.++++++++++
T Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~  159 (465)
T PRK06291         80 IEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII  159 (465)
T ss_pred             HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEE
Confidence            99997543       24788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG  311 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G  311 (456)
                      |++.|+++.+.+.++.++.+.+.. +++.+.|||++||+|.+ .+|+++|+|||||||+|+++|.+|+|+++++||||||
T Consensus       160 t~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~vpVv~Gfig~~-~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~G  237 (465)
T PRK06291        160 TDSNFGNARPLPKTYERVKERLEP-LLKEGVIPVVTGFIGET-EEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG  237 (465)
T ss_pred             ecCCCCceeechhhHHHHHHHHHH-HhhcCcEEEEeCcEEcC-CCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCC
Confidence            999999888766677777665544 46788999999999998 5999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEE
Q 012808          312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVL  391 (456)
Q Consensus       312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~  391 (456)
                      |||+||+++|+|+++++|+|+||.+|+++|++++||+|++||+++|||++|+|+++|+++||+|..........|++|+.
T Consensus       238 i~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~~~~~V~~It~  317 (465)
T PRK06291        238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSESSKRVVKAVTL  317 (465)
T ss_pred             CCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccccCcccceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999998765434457999999


Q ss_pred             ecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          392 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       392 ~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      ++|+++|++.|.+|.+.+|+++++|++|+++||+|+|++  +|+.+|+|+|+.++...
T Consensus       318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~  375 (465)
T PRK06291        318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEK  375 (465)
T ss_pred             eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHH
Confidence            999999999999999999999999999999999999998  68999999999987543

>PRK09181 aspartate kinase; Validated

Probab=100.00  E-value=1.2e-70  Score=579.35  Aligned_cols=346  Identities=25%  Similarity=0.336  Sum_probs=290.7

Q ss_pred             ceEEEEeCccccCCHHHHHHHHH-HHHcCC----CCCcEEEEcCCCcCchHHHHhhHHH-------HhcCCCccchHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAE-LILSFP----NERPVIVLSAMGKTTNKLLLAGEKA-------VSCGVTNISCIDEL  148 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~-iI~~~~----~~~~vvVVSA~g~vTd~Ll~~~~~~-------~~~~~~~~~~~~~l  148 (456)
                      +.+|+|||||||   +++++|.+ ++.+..    ..+++||||||||+||+|+++.+++       ...+ .+.++.+.+
T Consensus         3 ~~~V~KFGGtSv---~~~~~v~~~iv~~~~~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~-~~~~~~~~l   78 (475)
T PRK09181          3 MHTVEKIGGTSM---SAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLEHKKTGEPGVYALFAKA-NDEAWREAL   78 (475)
T ss_pred             ceEEEEECCCcH---HHHHHHHhheEeccccccCCCCeEEEEeCCCcchHHHHHhHhhcchhHHHHHHHh-cCccHHHHH
Confidence            359999999999   45666777 444331    2578999999999999999866411       1110 234677789


Q ss_pred             HHHHHHHHHHHHHhCCCH-------HH-------HHHHHHHHHHHHH-HhhhcccCCHHHHHHHHhhhHHHHHHHHHHHH
Q 012808          149 SFVKDLHHRTVDELGIDR-------SI-------IATHLEELEQLLK-GIAMLKELTPRSRDYLVSFGECMSTRIFAAYL  213 (456)
Q Consensus       149 ~~i~~~~~~~~~~l~~~~-------~~-------i~~~~~~L~~ll~-gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L  213 (456)
                      +.|+++|..++++|..+.       +.       +..+|.+++++++ ++.++++++++.+|+|+|+||++|+.||+.+|
T Consensus        79 ~~i~~~~~~i~~~L~~~~~~~~~~~~~i~~~~~~~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~L  158 (475)
T PRK09181         79 EAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLL  158 (475)
T ss_pred             HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHHH
Confidence            999999999999997421       12       3667777788777 88889999999999999999999999999999


Q ss_pred             HHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHH
Q 012808          214 NKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATT  293 (456)
Q Consensus       214 ~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~  293 (456)
                      +++|+++.++|+..+  ...+      . ....+++.+.+.. |...+.|||++||++ + ++|++||||||||||||++
T Consensus       159 ~~~Gi~a~~ld~~~~--~~~~------~-~~~~~~i~~~l~~-~~~~~~v~Vv~GF~~-~-~~G~itTLGRGGSDyTAai  226 (475)
T PRK09181        159 QNRGVNARFVDLTGW--DDDD------P-LTLDERIKKAFKD-IDVTKELPIVTGYAK-C-KEGLMRTFDRGYSEMTFSR  226 (475)
T ss_pred             HhCCCCeEEeccccc--cCCc------c-cchHHHHHHHHhh-hccCCcEEEecCCcC-C-CCCCEEecCCChHHHHHHH
Confidence            999999999987543  1111      1 1123444444332 223567999999975 5 4799999999999999999


Q ss_pred             HHHHcCCceEEEeecCCccccCCCCCC--CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCC
Q 012808          294 IGKALGLQEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP  371 (456)
Q Consensus       294 lA~~L~A~~l~i~TDV~GV~taDP~~v--~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~  371 (456)
                      +|++|+|++++|||||+ |||+|||++  |+|++|++|||+||.||+++||+||||+|++||++++||++|+|+++|+.+
T Consensus       227 lAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~~  305 (475)
T PRK09181        227 IAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHP  305 (475)
T ss_pred             HHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCCC
Confidence            99999999999999996 999999999  699999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCC
Q 012808          372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPS  443 (456)
Q Consensus       372 GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~  443 (456)
                      ||+|+....+....|++|+.++|+++|+|.+.+|.+.+|+++++|++|+++||+|+|+++|+.+|||+|+.+
T Consensus       306 GT~I~~~~~~~~~~ik~It~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~  377 (475)
T PRK09181        306 GTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATNANTITHYLWGS  377 (475)
T ss_pred             CeEEecCcccccccceeEeccCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCC
Confidence            999987543334568999999999999999999999999999999999999999999999999999999887

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=100.00  E-value=4.6e-70  Score=605.24  Aligned_cols=352  Identities=26%  Similarity=0.363  Sum_probs=300.9

Q ss_pred             cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      +.|+|+|||||||+|++++++|+++|++..+.+++||||||+|+||+|+++++.+..   ......+.++.++++|..++
T Consensus        10 M~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVVSA~~~~Td~L~~~~~~~~~---~~~~~~~~l~~i~~~h~~~~   86 (810)
T PRK09466         10 MGRQLHKFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQT---DRLSAHQVQQTLRRYQQDLI   86 (810)
T ss_pred             ceeEEEEECccccCCHHHHHHHHHHHhhhccCCEEEEEcCCCCCHHHHHHHHHHhhc---CchhHHHHHHHHHHHHHHHH
Confidence            357999999999999999999999999765556899999999999999998875532   12345677899999999999


Q ss_pred             HHhCCCHH------HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808          160 DELGIDRS------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT  233 (456)
Q Consensus       160 ~~l~~~~~------~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~  233 (456)
                      ++|..+..      .|.+.+++|+++++     ++++++.+|+|+|+||++|+.||+.+|+++|+++.++|++++  ++.
T Consensus        87 ~~L~~~~~~~~~~~~i~~~~~~l~~~l~-----~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~--i~~  159 (810)
T PRK09466         87 EGLLPAEQARSLLSRLISDLERLAALLD-----GGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSF--LRA  159 (810)
T ss_pred             HHhhcchhhhHHHHHHHHHHHHHHHHhh-----ccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHh--eec
Confidence            99976431      25556666666665     378899999999999999999999999999999999999995  555


Q ss_pred             cCCCCccee-ecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          234 DDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       234 ~~~~~a~i~-~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                      +.+.++++. ..+.+.+.+.+.+   ..+.+||++||+|.+ ++|++||||||||||||+++|++|+|++++||||||||
T Consensus       160 ~~~~~~~i~~~~~~~~l~~~~~~---~~~~v~Vv~GF~g~~-~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi  235 (810)
T PRK09466        160 ERAAQPQVDEGLSYPLLQQLLAQ---HPGKRLVVTGFISRN-EAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGV  235 (810)
T ss_pred             CCCCCcccchhhhHHHHHHHHhc---cCCeEEEeeCccccC-CCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence            555556653 2334444443321   134799999999999 59999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEe
Q 012808          313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLK  392 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~  392 (456)
                      ||+|||++|+|++|++|||+||.||+++||+||||+|++|++++||||+|+|+|+|+.+||+|..... ....+++|+.+
T Consensus       236 ~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~-~~~~v~~It~~  314 (810)
T PRK09466        236 YSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA-SGTGARIVTSL  314 (810)
T ss_pred             ccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc-cccceeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999976422 23358999999


Q ss_pred             cCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808          393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW  446 (456)
Q Consensus       393 ~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~  446 (456)
                      +|+++|++.+.+|.+.+|+++++|+.|+++||+|+|++  +++.+|+|+++.++..
T Consensus       315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~  370 (810)
T PRK09466        315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVAD  370 (810)
T ss_pred             CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHH
Confidence            99999999998888999999999999999999999996  5577899999866543

>PRK05925 aspartate kinase; Provisional

Probab=100.00  E-value=2.8e-69  Score=564.53  Aligned_cols=346  Identities=27%  Similarity=0.417  Sum_probs=303.0

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      .|+|+|||||||+|++++++++++|++.  .+++||||||+|+||.|+++++.+.      ....+.++.++++|..+++
T Consensus         2 ~~~V~KFGGtSv~~~e~i~~v~~ii~~~--~~~vVVvSA~~~~Td~L~~~~~~a~------~~~~~~~~~i~~~~~~~~~   73 (440)
T PRK05925          2 APLVYKFGGTSLGTAESIRRVCDIICKE--KPSFVVVSAVAGVTDLLEEFCRLSK------GKREALTEKIREKHEEIAK   73 (440)
T ss_pred             CcEEEEECccccCCHHHHHHHHHHHhcC--CCEEEEECCCCCCHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999863  5689999999999999999877542      2234578899999999999


Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcc
Q 012808          161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD  240 (456)
Q Consensus       161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~  240 (456)
                      +|..+. .+..++++|+++++    .++++++.+|+++++||++|+.|++++|++.|+++.++|++++ ++|++.|++++
T Consensus        74 ~l~~~~-~~~~~~~~L~~~~~----~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~  147 (440)
T PRK05925         74 ELGIEF-SLSPWWERLEHFED----VEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAV  147 (440)
T ss_pred             Hhhcch-hhhHHHHHHHHHHH----hCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCccccc
Confidence            997543 25566677777765    4577889999999999999999999999999999999999998 89999999888


Q ss_pred             eeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCC
Q 012808          241 ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH  320 (456)
Q Consensus       241 i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v  320 (456)
                      ++   .+.+.+.+....++.+.|||++||+|.+ ++|+++|||||||||+|+++|.+|+|+++++|||||||||+||+++
T Consensus       148 ~~---~~~~~~~~~~~~~~~~~v~Vv~GF~g~~-~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~  223 (440)
T PRK05925        148 PD---LALMQTAWHELALQEDAIYIMQGFIGAN-SSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKII  223 (440)
T ss_pred             cC---HHHHHHHHHHhhccCCcEEEecCcceeC-CCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCC
Confidence            74   2333344443334566899999999999 5999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC--CccceeeEEEEecCeEEE
Q 012808          321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--MSKAVLTSIVLKRNVTML  398 (456)
Q Consensus       321 ~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--~~~~~i~~I~~~~nvalI  398 (456)
                      |+|++|++++|+||.+|+++|++++||++++||+++|||++|+|+++|+++||+|.+...  .....|++|+.++|+++|
T Consensus       224 ~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~~~~~~ik~It~~~~~~~i  303 (440)
T PRK05925        224 KDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEVSYEPRIKALSLKQNQALW  303 (440)
T ss_pred             CCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccccCCCceEEEEEeCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999987531  233469999999999999


Q ss_pred             EEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       399 sv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      ++.+..  ..+++++++|+.|+++||+|+++++++.+|+|+++.++..
T Consensus       304 ~v~~~~--~~~~~~~~if~~l~~~~I~vd~i~s~~~sis~~i~~~~~~  349 (440)
T PRK05925        304 SVDYNS--LGLVRLEDVLGILRSLGIVPGLVMAQNLGVYFTIDDDDIS  349 (440)
T ss_pred             EEecCC--cchhHHHHHHHHHHHcCCcEEEEeccCCEEEEEEechhcc
Confidence            997643  3578899999999999999999988899999999988753

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=100.00  E-value=1.4e-68  Score=596.80  Aligned_cols=356  Identities=32%  Similarity=0.505  Sum_probs=314.4

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      |+|+|||||||++++++++++++|++.. +.++|||||||+|+||.|+++++.+.+.   +.++.+.++.++++|. +++
T Consensus         1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vVVVSA~~~vTd~L~~~~~~~~~~---~~~~~~~~~~~~~~h~-~~~   76 (819)
T PRK09436          1 MRVLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAAKG---DDAYPEILDAERIFHE-LLD   76 (819)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHhhcccCCEEEEEcCCcCcHHHHHHHHHHHhcC---CchHHHHHHHHHHHHH-HHH
Confidence            6899999999999999999999999753 3578999999999999999988876542   2345566788888884 222


Q ss_pred             Hh---CCC------HHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          161 EL---GID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       161 ~l---~~~------~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                      .+   ...      ...|.+++++|++++++++++++++++.+|+|+|+||++|+.|++++|++.|+++.++|++++ ++
T Consensus        77 ~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~  155 (819)
T PRK09436         77 GLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPREL-LL  155 (819)
T ss_pred             HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHe-EE
Confidence            22   111      135888999999999999999999999999999999999999999999999999999999998 88


Q ss_pred             eecCCCCccee-ecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          232 TTDDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       232 t~~~~~~a~i~-~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      |++.|++++++ +.+.+.+++.    +...+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||
T Consensus       156 t~~~~~~~~~~~~~~~~~i~~~----~~~~~~v~Vv~Gfig~~-~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVd  230 (819)
T PRK09436        156 ADGHYLESTVDIAESTRRIAAS----FIPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVD  230 (819)
T ss_pred             ecCCCCCceechHhhHHHHHHH----HhcCCcEEEecCcccCC-CCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCC
Confidence            88888888774 3333334333    23457899999999998 699999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV  390 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~  390 (456)
                      ||||+||+++|+|++|++|||+||.+|+++|++++||+|++||+++|||++|+|+++|+.+||+|+.+.++....|++|+
T Consensus       231 Gvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~~~~~~Vk~It  310 (819)
T PRK09436        231 GVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESDEDSLPVKGIS  310 (819)
T ss_pred             ceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCcccccccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999876433445799999


Q ss_pred             EecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       391 ~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      .++|+++|+++|.+|.+.+|+++++|++|+++||+|+|++  +|+.+|+|+|++++...
T Consensus       311 ~~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~  369 (819)
T PRK09436        311 NLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAK  369 (819)
T ss_pred             EeCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHH
Confidence            9999999999999999999999999999999999999998  68999999999987643

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=100.00  E-value=1.4e-66  Score=585.31  Aligned_cols=358  Identities=29%  Similarity=0.486  Sum_probs=313.3

Q ss_pred             cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHH
Q 012808           80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR  157 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~  157 (456)
                      +.|+|+|||||||+|++++++++++|++.  .+++++||||||+|+||+|+++++.+.+     .++.+.++.|+++|..
T Consensus         7 ~~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~-----~~~~~~~~~i~~~~~~   81 (861)
T PRK08961          7 DRWVVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGA-----GDSASRVAAIRQRHRE   81 (861)
T ss_pred             CCcEEEEECccccCCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhc-----cCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999853  2467899999999999999998764432     3567789999999999


Q ss_pred             HHHHhCCCHH-HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC-
Q 012808          158 TVDELGIDRS-IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-  235 (456)
Q Consensus       158 ~~~~l~~~~~-~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~-  235 (456)
                      ++++|+.+.. .+.+.+++|+++++++.++++.+++.+|.++|+||++|+.||+++|++.|+++.++|++++ ++++++ 
T Consensus        82 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-~~~~~~~  160 (861)
T PRK08961         82 LLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREW-LTALPQP  160 (861)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHh-EeecCcc
Confidence            9999976543 6889999999999999999999999999999999999999999999999999999999998 556552 


Q ss_pred             CC--Ccceeecch-HHHHHHHhhccccC-CceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808          236 FT--NADILEATY-PAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG  311 (456)
Q Consensus       236 ~~--~a~i~~~~~-~~i~~~l~~~ll~~-~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G  311 (456)
                      +.  ..+...... ....+.+...++.. +.|||++||+|.+ .+|+++||||||||++|+++|.+|+|+++++||||||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~-~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~G  239 (861)
T PRK08961        161 NQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARN-ADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPG  239 (861)
T ss_pred             ccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeC-CCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence            11  122211110 11222233222333 3599999999998 5899999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEE
Q 012808          312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVL  391 (456)
Q Consensus       312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~  391 (456)
                      |||+||+++|+|++|++|||+||.+|+++|++++||+|++||+++||||+|+|+++|+.+||+|..+. +....|++|+.
T Consensus       240 v~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~-~~~~~v~~It~  318 (861)
T PRK08961        240 MFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDA-EPVPGVKAISR  318 (861)
T ss_pred             cccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCC-CCCCcceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999998754 23457999999


Q ss_pred             ecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808          392 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL  445 (456)
Q Consensus       392 ~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~  445 (456)
                      ++|+++|+|.+.+|.+.+|+++++|+.|+++||+|+||++|+.+|+|++++.+.
T Consensus       319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~sse~sis~~i~~~~~  372 (861)
T PRK08961        319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSSETNVTVSLDPSEN  372 (861)
T ss_pred             ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEEcCCCEEEEEEccccc
Confidence            999999999999999999999999999999999999999999999999998775

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=100.00  E-value=1.7e-66  Score=517.00  Aligned_cols=288  Identities=39%  Similarity=0.565  Sum_probs=259.8

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE  161 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  161 (456)
                      |+|+|||||||+|++++++++++|+.. ++++|||||||+|+||.|+++++.+.++.  ..++.+.++.++++|..++++
T Consensus         1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~~vTd~L~~~~~~~~~~~--~~~~~~~l~~l~~~h~~~~~~   77 (292)
T cd04258           1 MVVAKFGGTSVADYAAMLRCAAIVKSD-ASVRLVVVSASAGVTNLLVALADAAESGE--EIESIPQLHEIRAIHFAILNR   77 (292)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHhcc-CCCEEEEEeCCCCchHHHHHHHHHHhcCC--cchhhHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999975 56789999999999999999888765532  123455799999999999999


Q ss_pred             hCCCHH---HHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          162 LGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       162 l~~~~~---~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                      |..+..   .|..++++|+++++++.++++++++.+|+|+++||++|+.+++++|+++|+++.++|++++ ++|+++|++
T Consensus        78 L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~  156 (292)
T cd04258          78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR  156 (292)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCcc
Confidence            987653   5888999999999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             cceeecc-hHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808          239 ADILEAT-YPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP  317 (456)
Q Consensus       239 a~i~~~~-~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP  317 (456)
                      ++++... ..++.+.+..  +.++.|||++||+|.+ .+|++|||||||||++|+++|.+|+|+++++||||+||||+||
T Consensus       157 a~~~~~~~~~~~~~~~~~--~~~~~v~Vv~Gf~g~~-~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP  233 (292)
T cd04258         157 AAPDLNALAELAAKLLKP--LLAGTVVVTQGFIGST-EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDP  233 (292)
T ss_pred             ccccHHHHHHHHHHHHHH--hhcCCEEEECCccccC-CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCC
Confidence            9885432 3333333322  2355899999999998 5999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      +++|+|+++++|||+||.||+++|++++||+|+.|+++++|||+|+|+++|+++||+|+
T Consensus       234 ~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~  292 (292)
T cd04258         234 RICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT  292 (292)
T ss_pred             CCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence            99999999999999999999999999999999999999999999999999999999995

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>TIGR00657 asp_kinases aspartate kinase

Probab=100.00  E-value=6.8e-66  Score=542.12  Aligned_cols=349  Identities=37%  Similarity=0.593  Sum_probs=301.4

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      +|+|+|||||||+|++++++++++|....  +.+++||||||+++||.|+++++.+...     ...+.++.+.++|..+
T Consensus         1 ~~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-----~~~~~~~~i~~~~~~~   75 (441)
T TIGR00657         1 ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPG-----PSKEFLEKIREKHIEI   75 (441)
T ss_pred             CCEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHH
Confidence            57999999999999999999999999642  4578999999999999999988766432     1256789999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                      +++|. +.    ...++++++...+.. ...+++.+|+++++||++|+.+++++|+++|++++++++.+.+++++++|++
T Consensus        76 ~~~l~-~~----~~~~~~~~~~~~~~~-~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~  149 (441)
T TIGR00657        76 LERLI-PQ----AIAEELKRLLDAELV-LEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGR  149 (441)
T ss_pred             HHHhh-hH----HHHHHHHHHHHHHHh-hhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCc
Confidence            99997 32    233334444433321 1224678899999999999999999999999999999999999999998887


Q ss_pred             cc-eeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808          239 AD-ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP  317 (456)
Q Consensus       239 a~-i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP  317 (456)
                      +. +...+...+.     .+++.+.|||++||+|.+ .+|+++++||||||++|+++|.+|+|+++++||||||||++||
T Consensus       150 ~~~~~~~~~~~l~-----~~l~~~~vpVv~G~~g~~-~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP  223 (441)
T TIGR00657       150 ARVIIEILTERLE-----PLLEEGIIPVVAGFQGAT-EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP  223 (441)
T ss_pred             eeecHhhhHHHHH-----HHHhcCCEEEEeCcEeeC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence            65 3333333222     235678999999999998 5899999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC-CccceeeEEEEecCeE
Q 012808          318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD-MSKAVLTSIVLKRNVT  396 (456)
Q Consensus       318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~-~~~~~i~~I~~~~nva  396 (456)
                      +++|++++++++||+||.+|+++|++++||+|++|+++++||++|+|+++|+.+||+|.+..+ +.+..+++|+.++|++
T Consensus       224 ~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~~~~~i~~It~~~~v~  303 (441)
T TIGR00657       224 RIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTKEMEEPIVKGLSLDRNQA  303 (441)
T ss_pred             CCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEecCCCCCCCceEEEeCCCccccCccceEEEeCCEE
Confidence            999999999999999999999999999999999999999999999999999999999987643 3344699999999999


Q ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +|++.|.+|.+ +|+++++|+.|+++||+|++++  +|+.+|+|+|+.++...
T Consensus       304 ~Isv~g~~~~~-~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~  355 (441)
T TIGR00657       304 RVTVSGLGMKG-PGFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQ  355 (441)
T ss_pred             EEEEECCCCCC-ccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHH
Confidence            99999999998 9999999999999999999996  67899999999887543

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=100.00  E-value=2.1e-66  Score=515.43  Aligned_cols=281  Identities=35%  Similarity=0.514  Sum_probs=250.1

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCC-------cCchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMG-------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL  154 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g-------~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~  154 (456)
                      |.|+|||||||+|++++++++++|+.. .++++||||||+       |+||.|+++++.+.+.    .++.+.++.++++
T Consensus         1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~----~~~~~~~~~i~~~   75 (288)
T cd04245           1 MKVVKFGGSSLASAEQFQKVKAIVKAD-PERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAG----EDTESIFEAIVDR   75 (288)
T ss_pred             CEEEEECcCccCCHHHHHHHHHHHHhc-CCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcC----cchHHHHHHHHHH
Confidence            689999999999999999999999965 467899999998       5999999988766442    2456789999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808          155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD  234 (456)
Q Consensus       155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~  234 (456)
                      |..++++|+.+.+.+++..+.++++.+.   ...++++.+|+|+++||++|+.+|+.+|++.|+++.++|++++|++|++
T Consensus        76 h~~~~~~L~~~~~~~~~i~~~~~~l~~~---~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~  152 (288)
T cd04245          76 YAEIADELGLPMSILEEIAEILENLANL---DYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTD  152 (288)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecC
Confidence            9999999987765555555555555442   2356889999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808          235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT  314 (456)
Q Consensus       235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t  314 (456)
                      .|+++++...+.+++.+.     +..+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||||||
T Consensus       153 ~~~~a~~~~~~~~~~~~~-----~~~~~v~Vv~Gf~g~~-~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvyt  226 (288)
T cd04245         153 EPGNAQILPESYQKIKKL-----RDSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYA  226 (288)
T ss_pred             CccccccchhhHHHHHHH-----HhCCCEEEEeCccccC-CCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceEC
Confidence            999998876666655543     3457899999999998 5999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      +||+++|+|+++++|||+||.||+++|++||||+|+.|+++++|||+|+|+++|+.+||+|.
T Consensus       227 aDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~  288 (288)
T cd04245         227 ANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV  288 (288)
T ss_pred             CCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence            99999999999999999999999999999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=100.00  E-value=1e-65  Score=514.21  Aligned_cols=290  Identities=55%  Similarity=0.830  Sum_probs=264.6

Q ss_pred             EEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808           83 CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE  161 (456)
Q Consensus        83 ~V~KFGGsSv~s~~~~~~va~iI~~~-~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  161 (456)
                      +|+|||||||+|++++++++++|++. .+++++||||||+|+||.|+++++.+....  ..++.+.++.+.++|..++++
T Consensus         2 ~V~KFGGtSv~~~~~~~~v~~iI~~~~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~--~~~~~~~l~~i~~~h~~~~~~   79 (298)
T cd04244           2 LVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSGR--IAGVKDFIEILRLRHIKAAKE   79 (298)
T ss_pred             EEEEECcccCCCHHHHHHHHHHHHHhhcCCCEEEEEeCCCCcHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999974 346789999999999999999887664321  235667799999999999999


Q ss_pred             hCCCH------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC
Q 012808          162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD  235 (456)
Q Consensus       162 l~~~~------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~  235 (456)
                      |..+.      +.|+.++++|+++++++..+++++++.+|+|+|+||++|+.|++++|+++|+++.++++++++++|+++
T Consensus        80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~  159 (298)
T cd04244          80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDN  159 (298)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCc
Confidence            98653      458899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccC
Q 012808          236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC  315 (456)
Q Consensus       236 ~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta  315 (456)
                      ++++.+...++.++.+.+.. +++.+.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|++++|||||+|||++
T Consensus       160 ~~~a~~~~~~~~~i~~~l~~-ll~~~~vpVv~Gfig~~-~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~  237 (298)
T cd04244         160 FGNARPLPATYERVRKRLLP-MLEDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTA  237 (298)
T ss_pred             ccccccchhHHHHHHHHHHH-HhhcCCEEEEeCccccC-CCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence            88877665566777766653 46678999999999998 58999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       316 DP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      ||+++|+|+++++|||+||.+|+++|++++||+|++||+++||||+|+|+++|+.+||+|+
T Consensus       238 dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~  298 (298)
T cd04244         238 DPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT  298 (298)
T ss_pred             CCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence            9999999999999999999999999999999999999999999999999999999999995

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=4e-65  Score=508.54  Aligned_cols=286  Identities=39%  Similarity=0.619  Sum_probs=257.9

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      |+|+|||||||+|++++++++++|.+.. +.+++||||||+|+||.|+++++.+.+.   +..+...++.++++|..+++
T Consensus         1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vvVvSA~~gvTd~L~~~~~~~~~~---~~~~~~~l~~i~~~h~~~~~   77 (294)
T cd04257           1 MKVLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASSG---DDAYEDILQELESKHLDLIT   77 (294)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCcHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999653 4678999999999999999988866542   22355679999999999999


Q ss_pred             HhCCCH------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808          161 ELGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD  234 (456)
Q Consensus       161 ~l~~~~------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~  234 (456)
                      +|..+.      ..|++.+++|+++++++.++++++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ ++|++
T Consensus        78 ~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~  156 (294)
T cd04257          78 ELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDG  156 (294)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecC
Confidence            997653      35888999999999999999999999999999999999999999999999999999999996 88999


Q ss_pred             CCCCcceee-cchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808          235 DFTNADILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL  313 (456)
Q Consensus       235 ~~~~a~i~~-~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~  313 (456)
                      +|+++++.. .+..++.+.+.    ..+.|||++||+|.+ .+|.++||||||||++|+++|.+|+|+++++||||||||
T Consensus       157 ~~~~a~~~~~~~~~~l~~~~~----~~~~v~Vv~Gfig~~-~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvy  231 (294)
T cd04257         157 GYLNAVVDIELSKERIKAWFS----SNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVY  231 (294)
T ss_pred             CCCceEechHhhHHHHHHHHh----cCCCEEEecCcccCC-CCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccC
Confidence            999888854 33444444322    227899999999998 589999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      |+||+++|+|+++++|||+||.+|+++|++++||+|++|++++|||++|+|+++|+.+||+|+
T Consensus       232 t~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~  294 (294)
T cd04257         232 SADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS  294 (294)
T ss_pred             CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence            999999999999999999999999999999999999999999999999999999999999994

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=7.4e-65  Score=506.39  Aligned_cols=285  Identities=40%  Similarity=0.642  Sum_probs=256.7

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE  161 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  161 (456)
                      |+|+|||||||+|++++++++++|.+..+.+++||||||+|+||.|+++++.+....   ..+.+.++.++++|..++++
T Consensus         1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~vvVvSA~~gvTd~L~~~~~~a~~~~---~~~~~~l~~i~~~h~~~~~~   77 (293)
T cd04243           1 MKVLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGD---DAQAIVLQEIRERHLDLIKE   77 (293)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCCCcHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999875456889999999999999999888765432   23344689999999999999


Q ss_pred             hCCCH------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC
Q 012808          162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD  235 (456)
Q Consensus       162 l~~~~------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~  235 (456)
                      |..+.      ..|..++++|+++++++.++++++++.+|+|+++||+||+.|++.+|+++|+++.++|++++ +++++.
T Consensus        78 L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~  156 (293)
T cd04243          78 LLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDG  156 (293)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHe-EEecCC
Confidence            98654      35888999999999999999999999999999999999999999999999999999999987 888888


Q ss_pred             CCCcceeecc-hHHHHHHHhhccccC-CceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808          236 FTNADILEAT-YPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL  313 (456)
Q Consensus       236 ~~~a~i~~~~-~~~i~~~l~~~ll~~-~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~  313 (456)
                      ++++.+.... ...+...     +.. +.|||++||+|.+ .+|+++|||||||||+|+++|.+|+|+++++||||||||
T Consensus       157 ~~~~~~~~~~s~~~~~~~-----~~~~~~v~Vv~Gfig~~-~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiy  230 (293)
T cd04243         157 FLNAVVDLKLSKERLAQL-----LAEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVY  230 (293)
T ss_pred             CCcchhhhHHHHHHHHHH-----HhcCCCEEEecCccccC-CCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccC
Confidence            8888764432 3333332     233 7899999999998 599999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      |+||+++|+|++|++|||+||.+|+++|++++||+|++|+++++||++|+|+++|+.+||+|+
T Consensus       231 t~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~  293 (293)
T cd04243         231 TADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS  293 (293)
T ss_pred             CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence            999999999999999999999999999999999999999999999999999999999999994

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=100.00  E-value=1e-64  Score=505.50  Aligned_cols=284  Identities=34%  Similarity=0.550  Sum_probs=253.0

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      |+|+|||||||+|++++++++++|++..  +++++||||||+|+||.|+++++.+..     ..+.+.++.+.++|..++
T Consensus         1 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~-----~~~~~~l~~i~~~~~~~~   75 (295)
T cd04259           1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALL-----DEHHSLFNAIQSRHLNLA   75 (295)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhc-----cChHHHHHHHHHHHHHHH
Confidence            6899999999999999999999998642  357899999999999999998876643     225667999999999999


Q ss_pred             HHhCCCH-HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          160 DELGIDR-SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       160 ~~l~~~~-~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                      ++|..+. ..|+..+++|+++++++.++++++++.+|+|+|+||++|+.||+.+|++.|+++.++|++++ +++++++++
T Consensus        76 ~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~~~~~~~~  154 (295)
T cd04259          76 EQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGG  154 (295)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHh-eeecccccc
Confidence            9998654 46889999999999999999999999999999999999999999999999999999999998 777777754


Q ss_pred             c-------cee-ecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          239 A-------DIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       239 a-------~i~-~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      +       ++. +.+..++.+.+    ...+.|||++||+|.+ ++|++|||||||||++|+++|.+|+|+++++||||+
T Consensus       155 ~~~~~~~a~v~~~~~~~~l~~~l----~~~~~v~Vv~GFig~~-~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~  229 (295)
T cd04259         155 ETMNYLSARCESEYADALLQKRL----ADGAQLIITQGFIARN-AHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVP  229 (295)
T ss_pred             cccccccceehhhhhHHHHHHHH----hcCCceeEeCCceeeC-CCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence            3       331 22333444332    2235799999999999 599999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      |||++||+++|+|++|++|||+||.+|+++|++++||+|++|+++++||++|+|+++|+.+||+|+
T Consensus       230 Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~  295 (295)
T cd04259         230 GLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT  295 (295)
T ss_pred             ccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999995

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=100.00  E-value=2.4e-64  Score=503.97  Aligned_cols=288  Identities=32%  Similarity=0.500  Sum_probs=246.1

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCC------cCchHHHHhhHHHHhcCCCccchHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMG------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKD  153 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g------~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~  153 (456)
                      |+|+|||||||+|++  ++++++|.+.  .+.+++||||||+      |+||.|+++++.+....  ..++.+.++.+++
T Consensus         2 ~~V~KFGGtSv~~~~--~~v~~~i~~~~~~~~~~vVVvSA~~~~~~~~gvTd~L~~~~~~a~~~~--~~~~~~~l~~i~~   77 (306)
T cd04247           2 WVVQKFGGTSVGKFP--DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQ--EKAFHDIVEDIRS   77 (306)
T ss_pred             CEEEEeCchhhccHH--HHHHHHHHhhhccCCceEEEEeccccCCCccChHHHHHHHHHHHHhhc--cccHHHHHHHHHH
Confidence            789999999999984  7999866642  2457899999998      99999999988765321  3467788999999


Q ss_pred             HHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEeccc
Q 012808          154 LHHRTVDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF  226 (456)
Q Consensus       154 ~~~~~~~~l~~~~-------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~  226 (456)
                      +|..++++|..+.       ..+++++++|+++++++.++++++++.+|+|+|+||+||+.||+.+|++.|+++.++|++
T Consensus        78 ~h~~~~~~L~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~  157 (306)
T cd04247          78 DHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLS  157 (306)
T ss_pred             HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHH
Confidence            9999999997643       247788999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeecCCCCcceeecchHHHHHHHhhcccc-CCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808          227 DIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV  305 (456)
Q Consensus       227 ~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~-~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i  305 (456)
                      ++ +.++..  ........+.++.+.+...+.+ .+.|||++||+|.+ .+|++||||||||||+|+++|..|+|++++|
T Consensus       158 ~~-i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~-~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i  233 (306)
T cd04247         158 HI-VDLDFS--IEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQI  233 (306)
T ss_pred             Hh-eecCCC--ccccccchhHHHHHHHHHHhhccCCceEEeeccEecC-CCCCeEEeCCCchHHHHHHHHHHcCCCEEEE
Confidence            96 444332  1111111112233333332222 46799999999998 5899999999999999999999999999999


Q ss_pred             eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEee
Q 012808          306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR  377 (456)
Q Consensus       306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~  377 (456)
                      ||||+||||+||+++|+|++|++|||+||.||+++|++||||+|++||+++||||+|+|+++|+.+||+|.+
T Consensus       234 ~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~  305 (306)
T cd04247         234 WKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP  305 (306)
T ss_pred             eecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999975

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=100.00  E-value=1.6e-60  Score=495.59  Aligned_cols=309  Identities=39%  Similarity=0.624  Sum_probs=275.3

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      |++|+|||||+|.+++.+++++++|+..  .+.+++|||||++++||+|+++++....                      
T Consensus         1 ~~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~----------------------   58 (401)
T TIGR00656         1 ELIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIR----------------------   58 (401)
T ss_pred             CcEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhc----------------------
Confidence            5689999999999999999999999854  3467899999999999999876431100                      


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                                                  ...++..+|.++++||++|+.+++++|+++|+++.++++.+.++++++.+++
T Consensus        59 ----------------------------~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~  110 (401)
T TIGR00656        59 ----------------------------DAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGN  110 (401)
T ss_pred             ----------------------------cCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCc
Confidence                                        1235677899999999999999999999999999999999988999998888


Q ss_pred             cceeecch-HHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808          239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP  317 (456)
Q Consensus       239 a~i~~~~~-~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP  317 (456)
                      +++.+... ..+.+     +++.+.|||++||+|.+ .+|.++|+||||||++|+++|.+|+|+++++|||||||||+||
T Consensus       111 ~~~~~~~~~~~l~~-----~l~~~~vpVi~g~~~~~-~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP  184 (401)
T TIGR00656       111 AKIDIIATEERLLP-----LLEEGIIVVVAGFQGAT-EKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDP  184 (401)
T ss_pred             eEeeecchHHHHHH-----HHhCCCEEEecCcceeC-CCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence            87765444 33332     35678999999999988 5899999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEE
Q 012808          318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM  397 (456)
Q Consensus       318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nval  397 (456)
                      +++|+|+++++|||+||.+|+++|++++||+|++||++++||++|+|+++|+ +||+|.+..+ ..+.+++|+.++|+++
T Consensus       185 ~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~-~gT~I~~~~~-~~~~v~~I~~~~~va~  262 (401)
T TIGR00656       185 RVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE-EGTLITNSME-NPPLVKGIALRKNVTR  262 (401)
T ss_pred             CCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC-CCeEEEeCcc-cCCceEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999999998 8999987532 2246999999999999


Q ss_pred             EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CCCEEEEEEcCCCcCc
Q 012808          398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWS  447 (456)
Q Consensus       398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se~sIsi~V~~~d~~~  447 (456)
                      |++.|.+|.+.+|+++++|++|++++|+++++++  |+.+|+|+|+++|...
T Consensus       263 vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~  314 (401)
T TIGR00656       263 VTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTVDETDADE  314 (401)
T ss_pred             EEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHH
Confidence            9999999999999999999999999999999998  8899999998776543

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK08841 aspartate kinase; Validated

Probab=100.00  E-value=8.2e-61  Score=495.07  Aligned_cols=300  Identities=33%  Similarity=0.483  Sum_probs=263.6

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .|+|+|||||||+|++++++++++|+..  .+.+++||||||+++||.|++.+...                        
T Consensus         2 ~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~------------------------   57 (392)
T PRK08841          2 PLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQV------------------------   57 (392)
T ss_pred             CeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhh------------------------
Confidence            3799999999999999999999999863  34578999999999999998743210                        


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                          .                       ...+++.+|.++++||++|+.|++.+|++.|+++.++++++.++++++.+.+
T Consensus        58 ----~-----------------------~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~  110 (392)
T PRK08841         58 ----D-----------------------SVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHND  110 (392)
T ss_pred             ----c-----------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCC
Confidence                0                       0124567899999999999999999999999999999999988999888877


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN  318 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~  318 (456)
                      +++...+...+.+     +++.+.|||++||+|.+ ++|+++|||||||||+|+++|.+|+|+++++|||||||||+||+
T Consensus       111 ~~i~~~~~~~i~~-----ll~~~~vpVv~Gf~g~~-~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~  184 (392)
T PRK08841        111 ATIKHIDTSTITE-----LLEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR  184 (392)
T ss_pred             ceechhhHHHHHH-----HHhCCCEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCC
Confidence            7775544433332     35678899999999998 58999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEEE
Q 012808          319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML  398 (456)
Q Consensus       319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nvalI  398 (456)
                      ++|+|+++++|||+||.||+++|+++|||+|++||+++|||++|+|+++| .+||+|..+.  ....|++|+.++|+++|
T Consensus       185 ~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~-~~GT~I~~~~--~~~~i~~i~~~~~~~~i  261 (392)
T PRK08841        185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV-GEGTLIKGEA--GTQAVCGIALQRDLALI  261 (392)
T ss_pred             CCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC-CCCeEEEecc--CCCcEEEEEEeCCeEEE
Confidence            99999999999999999999999999999999999999999999999997 5799997543  23479999999999999


Q ss_pred             EEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       399 sv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ++.+.       .++++|+.|+++||+++++++++.+++|+|+..++..
T Consensus       262 ~v~~~-------~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v~~~~~~~  303 (392)
T PRK08841        262 EVESE-------SLPSLTKQCQMLGIEVWNVIEEADRAQIVIKQDACAK  303 (392)
T ss_pred             Eeccc-------hHHHHHHHHHHcCCCEEEEEecCCcEEEEECHHHHHH
Confidence            99762       4689999999999999999999999999998776544

>PRK08373 aspartate kinase; Validated

Probab=100.00  E-value=1.8e-60  Score=482.04  Aligned_cols=323  Identities=30%  Similarity=0.463  Sum_probs=267.1

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .|+|+|||||||+|  ++++++++|.... +++++||||||+|+||.|+++++.+         +.+.++.+.++|.+++
T Consensus         4 ~m~V~KFGGsSv~~--~~~~v~~ii~~~~~~~~vvVVVSA~~gvTd~L~~l~~~~---------~~~~l~~i~~~h~~~~   72 (341)
T PRK08373          4 KMIVVKFGGSSVRY--DFEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETF---------DKEALEEIEEIHEEFA   72 (341)
T ss_pred             CCEEEEECCcchHh--HHHHHHHHHHHHhcCCCEEEEecCCchHHHHHHHHHHHH---------hHHHHHHHHHHHHHHH
Confidence            68999999999998  5999999998543 4578999999999999999987643         2457899999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA  239 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a  239 (456)
                      ++|+.+..   .+.++|+++++.+.-+  .+++.+|+|+|+||++|+.+++.+|+++|+++.+++++++ +.|++.++++
T Consensus        73 ~~L~~~~~---~~~~~l~~~~~~~~~~--~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a  146 (341)
T PRK08373         73 KRLGIDLE---ILSPYLKKLFNSRPDL--PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNA  146 (341)
T ss_pred             HHhccchh---hHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccce
Confidence            99987653   3445566666553322  3578899999999999999999999999999999999998 8888889988


Q ss_pred             ceeec-chHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808          240 DILEA-TYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN  318 (456)
Q Consensus       240 ~i~~~-~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~  318 (456)
                      ++... +...+ +.+.. +++.+.|||++||+| + .+|.++|||||||||+|+++|.+|+|++++||||||||||+||+
T Consensus       147 ~i~~~~s~~~~-~~l~~-~l~~g~VpVv~Gf~g-~-~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~  222 (341)
T PRK08373        147 FIDIKKSKRNV-KILYE-LLERGRVPVVPGFIG-N-LNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK  222 (341)
T ss_pred             eechhhhhhhH-HHHHH-HHhCCcEEEEeCCcc-C-CCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCC
Confidence            77321 11111 22322 357789999999999 6 58999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeEEE
Q 012808          319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML  398 (456)
Q Consensus       319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nvalI  398 (456)
                      ++|+|+++++|||+||.+|+++|++++||+|++|+++ +||++|+|+++| .+||+|+.... ....++++ +.+|.+.|
T Consensus       223 ~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~-~~GT~I~~~~~-~~~~~~~~-~~~~~~~i  298 (341)
T PRK08373        223 LVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-KIPIIFGRTRDW-RMGTLVSNESS-GMPILVHK-VGEEHAEI  298 (341)
T ss_pred             CCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-CCcEEEecCCCC-CCCcEEecCCC-CCceEEEE-ecCCEEEE
Confidence            9999999999999999999999999999999999999 999999999998 58999987543 23568888 89999999


Q ss_pred             EEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808          399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL  445 (456)
Q Consensus       399 sv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~  445 (456)
                      ++.+.  ...+|+-               .+.-.+..+.+.|+.+++
T Consensus       299 ~~~~~--~~~~~~~---------------~~~~~~~~~~~~~~~~~~  328 (341)
T PRK08373        299 LVVGV--EEEIGYP---------------VYEEGEFWFKIKVPKEEL  328 (341)
T ss_pred             EEecc--CCCCCCC---------------ceecCCceEEEecCHHHH
Confidence            99973  2334321               234556666666666554

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=100.00  E-value=7.6e-58  Score=452.40  Aligned_cols=279  Identities=28%  Similarity=0.401  Sum_probs=223.9

Q ss_pred             EEEEeCccccCCHHHHHHHHHHHHcCCC--CCcEEEEcCCCcCchHHHHh---hHHHHhcCC--CccchHHHHHHHHHHH
Q 012808           83 CVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLA---GEKAVSCGV--TNISCIDELSFVKDLH  155 (456)
Q Consensus        83 ~V~KFGGsSv~s~~~~~~va~iI~~~~~--~~~vvVVSA~g~vTd~Ll~~---~~~~~~~~~--~~~~~~~~l~~i~~~~  155 (456)
                      .|+|||||||++.+.+..  ++|.....  .++|+||||++|+||+|++.   ++..+...+  .+..|.+.|+.+.++|
T Consensus         2 ~V~K~GGTSms~~~~~~d--~i~~~~~~~~~~rv~VVSA~~gvT~~Lle~k~t~~~gv~~~~~~~~~~~~~al~~~~~~~   79 (304)
T cd04248           2 TVEKIGGTSMSAFGAVLD--NIILKPDSDLYGRVFVVSAYSGVTNALLEHKKTGAPGIYQHFVDADEAWREALSALKQAM   79 (304)
T ss_pred             ceeeecCcccccHHHHhh--hHhcCCcccCccEEEEEECCccchHHHHHhhhcCCcchhHHHhcCchHHHHHHHHHHHHH
Confidence            699999999999988888  66663221  25899999999999999973   111111111  2234677899999998


Q ss_pred             HHHHHHhCCCH-------HHHHHH-------HHHHHHHH-HHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCce
Q 012808          156 HRTVDELGIDR-------SIIATH-------LEELEQLL-KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKA  220 (456)
Q Consensus       156 ~~~~~~l~~~~-------~~i~~~-------~~~L~~ll-~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a  220 (456)
                      ..+.++|..+.       .++.+.       +.++..++ .|+..+++++++.+|+|+|+||++|+.+++.+|++.|++|
T Consensus        80 ~~~~~~l~~~~~~~~~a~~~i~~r~~~~~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A  159 (304)
T cd04248          80 LKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNA  159 (304)
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCe
Confidence            88877776431       234444       34444444 5778889999999999999999999999999999999999


Q ss_pred             EEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCC
Q 012808          221 RQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL  300 (456)
Q Consensus       221 ~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A  300 (456)
                      .++|...+  ...+.+.       ....+.+.+.. +...+.|||++||.+ + .+|+++|||||||||||++||.+|+|
T Consensus       160 ~~vD~~~~--~~~~~~t-------~~~~i~~~~~~-~~~~~~v~IvtGF~~-~-~~G~itTLGRGGSDyTAs~iAa~l~A  227 (304)
T cd04248         160 RFVDLSGW--RDSGDMT-------LDERISEAFRD-IDPRDELPIVTGYAK-C-AEGLMREFDRGYSEMTFSRIAVLTGA  227 (304)
T ss_pred             EEECcccc--cccCCCC-------cHHHHHHHHHh-hccCCcEEEeCCccC-C-CCCCEEEcCCCcHHHHHHHHHHHcCC
Confidence            99987653  2112111       12344444432 223567999999954 5 48999999999999999999999999


Q ss_pred             ceEEEeecCCccccCCCCCC--CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          301 QEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       301 ~~l~i~TDV~GV~taDP~~v--~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      ++++|||||+ |||+|||+|  |+|++|++|||+||.||+++|+++|||+|++|++++||||+|+|+|+|+++||+|+
T Consensus       228 ~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt  304 (304)
T cd04248         228 SEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT  304 (304)
T ss_pred             CEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence            9999999996 999999999  68999999999999999999999999999999999999999999999999999995

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=100.00  E-value=1.5e-57  Score=458.50  Aligned_cols=288  Identities=31%  Similarity=0.465  Sum_probs=243.3

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      |+|+|||||||+++  +++++++|.... +.+++||||||+|+||+|+++++.+         ..+.++.++++|.++++
T Consensus         1 m~V~KFGGsSv~~~--~~~v~~ii~~~~~~~~~vVVVSA~~gvTd~L~~~~~~~---------~~~~l~~i~~~h~~~~~   69 (327)
T TIGR02078         1 MIVVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTF---------DKSAALEIEEIYEEFAK   69 (327)
T ss_pred             CEEEEECCcchHHH--HHHHHHHHHHHhcCCCEEEEeCCCcchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence            68999999999986  999999998643 4578999999999999999976421         13568899999999999


Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcc
Q 012808          161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD  240 (456)
Q Consensus       161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~  240 (456)
                      +|+.+...+.+.++++.+.   ..   -.++..+|+|+++||++|+.|++.     |+++.+++++++ ++|++.|+++.
T Consensus        70 ~L~~~~~~~~~~l~~~~~~---~~---l~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~-i~t~~~~~~a~  137 (327)
T TIGR02078        70 ELGVDLNILSPYLKELFNP---PD---LPKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAF  137 (327)
T ss_pred             HhccchhhhHHHHHHHHhh---hc---cCChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHH-hccCCcCCcee
Confidence            9998665555555555443   22   235678999999999999999986     799999999998 88889999988


Q ss_pred             eee-cchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808          241 ILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI  319 (456)
Q Consensus       241 i~~-~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~  319 (456)
                      ++. .+..++. .+.. +++.+.|||++||+| + .+|.++|+|||||||+|+++|.+|+|+++++|||||||||+||++
T Consensus       138 ~~~~~~~~~~~-~l~~-~l~~g~IpVv~Gf~~-~-~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~  213 (327)
T TIGR02078       138 IDIKKSKRNAK-ILYE-VLESGKIPVIPGFYG-N-LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL  213 (327)
T ss_pred             echhhhHhhHH-HHHH-HHhCCcEEEEeCCcc-C-CCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCc
Confidence            753 2222222 2222 356789999999999 6 589999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecC-eEEE
Q 012808          320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRN-VTML  398 (456)
Q Consensus       320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~n-valI  398 (456)
                      +|+|++|+++||+||.+++++|++++||+|++|++++|||++|+|+++|+ +||+|+...+  .  +..|++++. ++.|
T Consensus       214 v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~--~--~~~i~~~~~~i~~v  288 (327)
T TIGR02078       214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR-MGTLISNRSS--G--MPLMVYKDGELLVV  288 (327)
T ss_pred             CCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC-CCcEEecCCC--C--CcEEEEccCcEEEE
Confidence            99999999999999999999999999999999999999999999999997 7999986542  2  345888888 8888


Q ss_pred             EEE
Q 012808          399 DIV  401 (456)
Q Consensus       399 sv~  401 (456)
                      ++.
T Consensus       289 ~~~  291 (327)
T TIGR02078       289 NVR  291 (327)
T ss_pred             EEe
Confidence            873

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>PRK08210 aspartate kinase I; Reviewed

Probab=100.00  E-value=2.2e-56  Score=465.05  Aligned_cols=311  Identities=33%  Similarity=0.564  Sum_probs=267.0

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCc-----CchHHHHhhHHHHhcCCCccchHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGK-----TTNKLLLAGEKAVSCGVTNISCIDELSFVKD  153 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~-----vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~  153 (456)
                      .++|+|||||++.+++.++++++.|...  .+.+++|||||||+     +|+.|++.+...                   
T Consensus         2 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~-------------------   62 (403)
T PRK08210          2 KIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEE-------------------   62 (403)
T ss_pred             CeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHh-------------------
Confidence            3689999999999999999999998853  24578999999976     588776533210                   


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808          154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT  233 (456)
Q Consensus       154 ~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~  233 (456)
                                                      ....+++.+|.++++||.+|+.+++++|+++|+++.++++.+.+++|+
T Consensus        63 --------------------------------~~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~  110 (403)
T PRK08210         63 --------------------------------FSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITD  110 (403)
T ss_pred             --------------------------------ccCCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEcc
Confidence                                            012356677889999999999999999999999999999999889999


Q ss_pred             cCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808          234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL  313 (456)
Q Consensus       234 ~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~  313 (456)
                      ++++++++...+...+.+     +++.+.|||++||+|.+ .+|+++|+||||||++|+++|.+|+|++++|||||||||
T Consensus       111 ~~~~~~~v~~~~~~~l~~-----~l~~~~vpVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~  184 (403)
T PRK08210        111 DNFTNAKIIEVNPDRILE-----ALEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIM  184 (403)
T ss_pred             CCCCceeeehhhHHHHHH-----HHhcCCEEEeeCeeecC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            988877765544433332     35678999999999988 589999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC------Cccceee
Q 012808          314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD------MSKAVLT  387 (456)
Q Consensus       314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~------~~~~~i~  387 (456)
                      ++||+++|++++|++|||+||.+|+++|++++||+|++||++++||++|+|++++ .+||+|.+..+      +....|+
T Consensus       185 ~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~~~~~~~~~v~  263 (403)
T PRK08210        185 TADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD-SPGTLITSLGDAKGGIDVEERLIT  263 (403)
T ss_pred             cCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCC-cCCcEEEecCccccccccccCceE
Confidence            9999999999999999999999999999999999999999999999999999985 46999987532      1345799


Q ss_pred             EEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc-HHHH
Q 012808          388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS-RELI  451 (456)
Q Consensus       388 ~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~-~~l~  451 (456)
                      +|+.++|+++|+|.+..+  .+|+++++|++|+++||||++++++..+++|+++.++... .+++
T Consensus       264 ~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I~i~~i~~~~~~is~~v~~~~~~~a~~~l  326 (403)
T PRK08210        264 GIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGISVDFINIFPTEVVFTVSDEDSEKAKEIL  326 (403)
T ss_pred             EEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCCeEEEEEecCceEEEEEcHHHHHHHHHHH
Confidence            999999999999987654  4999999999999999999999988889999999876544 3443

>PRK06635 aspartate kinase; Reviewed

Probab=100.00  E-value=2.7e-56  Score=464.38  Aligned_cols=306  Identities=34%  Similarity=0.567  Sum_probs=270.5

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      +++|+|||||+|.+++.++++++.|....  +.+++|||||++++||+|++..+...                       
T Consensus         2 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~-----------------------   58 (404)
T PRK06635          2 ALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVS-----------------------   58 (404)
T ss_pred             CeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhc-----------------------
Confidence            46899999999999999999999998642  45789999999999999987532100                       


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                                                  ...++..+|.++++||++|+.+++.+|+++|+++.++++.++++++++.|++
T Consensus        59 ----------------------------~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~  110 (404)
T PRK06635         59 ----------------------------PLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGK  110 (404)
T ss_pred             ----------------------------cCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCc
Confidence                                        0114567789999999999999999999999999999999998899888888


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN  318 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~  318 (456)
                      +++...+...+.+     +++.+.|||++||+|.+ .+|.++++||||||++|+++|.+|+|+++++||||||||++||+
T Consensus       111 ~~~~~~~~~~l~~-----~l~~~~ipVi~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~  184 (404)
T PRK06635        111 ARITDIDPSRIRE-----ALDEGDVVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPR  184 (404)
T ss_pred             eEeeecCHHHHHH-----HHhCCCEEEecCccEeC-CCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCC
Confidence            8776555544443     24678999999999998 58999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC--CccceeeEEEEecCeE
Q 012808          319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--MSKAVLTSIVLKRNVT  396 (456)
Q Consensus       319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--~~~~~i~~I~~~~nva  396 (456)
                      ++|+++++++++|+|+.+|+++|++++||+|++++++++||++|+|++++ .+||+|.....  +.+..+++|+..++++
T Consensus       185 ~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~-~~gT~i~~~~~~~~~~~~i~~I~~~~~v~  263 (404)
T PRK06635        185 IVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD-NPGTLITGEEEEIMEQPVVTGIAFDKDEA  263 (404)
T ss_pred             CCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC-CCCCEEeeCCccccccCceEEEEecCCeE
Confidence            99999999999999999999999999999999999999999999999987 67999987643  2345799999999999


Q ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcC
Q 012808          397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLW  446 (456)
Q Consensus       397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~  446 (456)
                      +|++.|  |.+.+|+++++|++|+++||+|+++++|     +.+|+|+|++++..
T Consensus       264 ~Isv~g--~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~  316 (404)
T PRK06635        264 KVTVVG--VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLE  316 (404)
T ss_pred             EEEECC--CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHH
Confidence            999998  8899999999999999999999999876     48899999887654

>PRK07431 aspartate kinase; Provisional

Probab=100.00  E-value=3.9e-55  Score=475.43  Aligned_cols=308  Identities=32%  Similarity=0.512  Sum_probs=267.8

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .|+|+|||||||+|++.++++++.|+..  .+.+++|||||+|++||+|++.+...                        
T Consensus         2 ~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~------------------------   57 (587)
T PRK07431          2 ALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEI------------------------   57 (587)
T ss_pred             CeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHh------------------------
Confidence            3789999999999999999999999864  24578999999999999998643210                        


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                                                 ..+.+....|+++++||++|+.+++.+|+++|++++++++.++++++++.++.
T Consensus        58 ---------------------------t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~  110 (587)
T PRK07431         58 ---------------------------SSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGR  110 (587)
T ss_pred             ---------------------------ccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCc
Confidence                                       11235567799999999999999999999999999999999998888888887


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCC-CCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP  317 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~-~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP  317 (456)
                      +++...+.+.+.+     +++.+.|||++||+|.+. .+|+++|+||||||++|+++|.+|+|+++++||||||||++||
T Consensus       111 ~~i~~~~~~~l~~-----~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP  185 (587)
T PRK07431        111 ARILEIKTDRIQR-----HLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDP  185 (587)
T ss_pred             eeeeeccHHHHHH-----HHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCC
Confidence            7776655544443     346789999999998752 2388999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc--------cceeeEE
Q 012808          318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS--------KAVLTSI  389 (456)
Q Consensus       318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~--------~~~i~~I  389 (456)
                      +++|+|++|++|+|+||.+|+++|+++|||+|++|++++|||++|+|++. +.+||+|.+..+..        ...++++
T Consensus       186 ~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~-~~~GT~i~~~~~~~~~~~~~~~~~~i~gi  264 (587)
T PRK07431        186 RLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-DAPGTLVTSPPPRPRSLGGLELGKPVDGV  264 (587)
T ss_pred             CCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC-CCCCeEEEeCCcccccccchhcccccceE
Confidence            99999999999999999999999999999999999999999999999994 56899998764321        3468999


Q ss_pred             EEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCc
Q 012808          390 VLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWS  447 (456)
Q Consensus       390 ~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~  447 (456)
                      ++.+|++++++.  +|.+.+|+++++|+.|+++||||+||+++     ..+|||+++.+++..
T Consensus       265 ~~~~~~a~itl~--~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~  325 (587)
T PRK07431        265 ELDEDQAKVALL--RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKK  325 (587)
T ss_pred             EEecCceEEEEe--cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHH
Confidence            999999999997  68889999999999999999999999753     388999999887643

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=100.00  E-value=1.9e-47  Score=371.57  Aligned_cols=237  Identities=38%  Similarity=0.607  Sum_probs=209.9

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      ++|+||||+++.|++.++++++.|....  +.+++||+||+++.|++|++......                        
T Consensus         1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------------------------   56 (239)
T cd04261           1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------------------------   56 (239)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------------------------
Confidence            4799999999999999999999998643  45789999999999999987532110                        


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA  239 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a  239 (456)
                                                 ...+.+.+|.++++||++|+.++++.|+++|++++++++.++++++.++|+.+
T Consensus        57 ---------------------------~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~  109 (239)
T cd04261          57 ---------------------------PRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKA  109 (239)
T ss_pred             ---------------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcc
Confidence                                       12245677889999999999999999999999999999999888898888777


Q ss_pred             ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808          240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI  319 (456)
Q Consensus       240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~  319 (456)
                      ++...+...+.+     +++.+.|||++||+|.+ ++|.++++|||++|++|+.+|.+|+|+++++||||||||++||++
T Consensus       110 ~i~~~~~~~l~~-----ll~~~~ipVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~  183 (239)
T cd04261         110 RIIDIDPDRIRE-----LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRI  183 (239)
T ss_pred             eechhhHHHHHH-----HHHcCCeEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCC
Confidence            765544433332     35678999999999998 589999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      +|+++++++|+|+|+.+|+++|++++||+|++|++++|||++|.|+++|+ +||+|+
T Consensus       184 ~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~-~gt~i~  239 (239)
T cd04261         184 VPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE-PGTLIT  239 (239)
T ss_pred             CCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC-CCcEeC
Confidence            99999999999999999999999999999999999999999999999999 999995

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=100.00  E-value=1.4e-47  Score=369.84  Aligned_cols=225  Identities=49%  Similarity=0.858  Sum_probs=197.3

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcC-CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~-~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      |+|+||||||+.+++.++++++.|.+. .+.++|||+||++++|+.|++.+                             
T Consensus         1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~-----------------------------   51 (227)
T cd04234           1 MVVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELA-----------------------------   51 (227)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHH-----------------------------
Confidence            689999999999999999999999875 24578999999999999886520                             


Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcc
Q 012808          161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD  240 (456)
Q Consensus       161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~  240 (456)
                                                         .++++||.+|+.+++++|+++|+++.++++.++++.+.+.+...+
T Consensus        52 -----------------------------------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~   96 (227)
T cd04234          52 -----------------------------------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAAR   96 (227)
T ss_pred             -----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhh
Confidence                                               578899999999999999999999999999998544443322223


Q ss_pred             eeecchHHHHHHHhhccccC-CceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808          241 ILEATYPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI  319 (456)
Q Consensus       241 i~~~~~~~i~~~l~~~ll~~-~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~  319 (456)
                      +...+...+.+     +++. +.|||++||+|.+ ++|.++++||||+|++|+++|.+|+|+++++|||||||||+||+.
T Consensus        97 ~~~~~~~~l~~-----~l~~~~~vpVv~g~i~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~  170 (227)
T cd04234          97 IIEISYERLKE-----LLAEIGKVPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI  170 (227)
T ss_pred             HHHHHHHHHHH-----HHhhCCCEEEecCceecC-CCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence            33333333322     3566 8999999999998 589999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      +|++++|++++|+|+.+|+++|+++|||+|++++++++||++|.|+++|+.+||+|+
T Consensus       171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~  227 (227)
T cd04234         171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT  227 (227)
T ss_pred             CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence            999999999999999999999999999999999999999999999999999999984

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=100.00  E-value=4.9e-47  Score=368.63  Aligned_cols=237  Identities=39%  Similarity=0.627  Sum_probs=209.3

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      |+|+||||+++.|++.++++++.|....  +.++++|+||+++.+++|++......                        
T Consensus         1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~------------------------   56 (239)
T cd04246           1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVS------------------------   56 (239)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhc------------------------
Confidence            6899999999999999999999998653  45789999999999999987432100                        


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA  239 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a  239 (456)
                                                 ...+...+|.++++||.+|+.++++.|+++|+++.++++.+.++++.+.|+++
T Consensus        57 ---------------------------~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~  109 (239)
T cd04246          57 ---------------------------PRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNA  109 (239)
T ss_pred             ---------------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCce
Confidence                                       01245667889999999999999999999999999999999878888888777


Q ss_pred             ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808          240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI  319 (456)
Q Consensus       240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~  319 (456)
                      ++...+...+.+     +++++.|||++||+|.+ ++|.++++|||++|++|+.+|.+|+|+++++||||||||++||+.
T Consensus       110 ~~~~~~~~~l~~-----ll~~g~ipVi~g~~~~~-~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~  183 (239)
T cd04246         110 RIIDIDPKRILE-----ALEEGDVVVVAGFQGVN-EDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI  183 (239)
T ss_pred             eechhhHHHHHH-----HHhcCCEEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCC
Confidence            765544443332     35678999999999988 589999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      +|+++++++|+|+|+.+|+++|++++||+|++|++++|||++|.|+++|+ +||+|+
T Consensus       184 ~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~-~gt~i~  239 (239)
T cd04246         184 VPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN-PGTLIT  239 (239)
T ss_pred             CCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC-CCcEeC
Confidence            99999999999999999999999999999999999999999999999999 999995

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=100.00  E-value=1.8e-46  Score=365.95  Aligned_cols=237  Identities=34%  Similarity=0.611  Sum_probs=205.9

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcC-----chHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKT-----TNKLLLAGEKAVSCGVTNISCIDELSFVKDL  154 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~v-----Td~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~  154 (456)
                      ++|+|||||++.|++.++++++.|....  +.+++||+||+|+.     |+.|++...                      
T Consensus         1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~----------------------   58 (244)
T cd04260           1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVY----------------------   58 (244)
T ss_pred             CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHH----------------------
Confidence            3799999999999999999999998653  34689999998773     554443210                      


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808          155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD  234 (456)
Q Consensus       155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~  234 (456)
                            ..                   +    ...++..+|.++++||.+++.+++++|+++|+++.++++.+.++++.+
T Consensus        59 ------~~-------------------~----~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~  109 (244)
T cd04260          59 ------AE-------------------N----SDISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDD  109 (244)
T ss_pred             ------hh-------------------c----CCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecC
Confidence                  00                   0    123566789999999999999999999999999999999999899999


Q ss_pred             CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808          235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT  314 (456)
Q Consensus       235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t  314 (456)
                      .+++.++...+...+.+     +++.+.|||++||+|.+ .+|++++++|||+|++|+.+|.+|+|+++++||||||||+
T Consensus       110 ~~~~~~v~~~~~~~l~~-----ll~~g~VPVv~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~  183 (244)
T cd04260         110 NYSNAKIIKVNPKKILS-----ALKEGDVVVVAGFQGVT-EDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMT  183 (244)
T ss_pred             CCCceeeeccCHHHHHH-----HHhCCCEEEecCCcccC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCc
Confidence            88777665555544432     35678999999999998 5899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      +||+.+|++++|++|+|+|+.+|+++|++++||+|++++++++|||+|+|+++|+ +||+|+
T Consensus       184 ~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~-~gt~i~  244 (244)
T cd04260         184 ADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN-PGTLIT  244 (244)
T ss_pred             CCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC-CCCEeC
Confidence            9999999999999999999999999999999999999999999999999999998 999995

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=100.00  E-value=7.6e-37  Score=297.09  Aligned_cols=237  Identities=40%  Similarity=0.602  Sum_probs=198.0

Q ss_pred             EEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808           84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE  161 (456)
Q Consensus        84 V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  161 (456)
                      |+||||+++.+++.++++++.|+..  .+.+.|+|+||++..++.|.+.....                           
T Consensus         1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~---------------------------   53 (248)
T cd02115           1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL---------------------------   53 (248)
T ss_pred             CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhh---------------------------
Confidence            7899999999999999999999974  24578999999999999887643211                           


Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC-cc
Q 012808          162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN-AD  240 (456)
Q Consensus       162 l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~-a~  240 (456)
                                      .+.++    ...+....+.++++|+.+++.++.++|+++|+++.++++.++++.+ ++++. .+
T Consensus        54 ----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~-~~~~~~g~  112 (248)
T cd02115          54 ----------------GYARG----LRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFAS-PNQGHVGK  112 (248)
T ss_pred             ----------------hhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEe-CCCCCccc
Confidence                            00111    1346777899999999999999999999999999999999885544 44444 34


Q ss_pred             eeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCC
Q 012808          241 ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH  320 (456)
Q Consensus       241 i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v  320 (456)
                      +...+.+.+.+.     ++.+.|||++||.+.+. + +..+++|++||++|+.+|.+|+|++++|||||+|||++||+++
T Consensus       113 ~~~~~~~~l~~~-----l~~~~ipVv~g~~~~~~-~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~  185 (248)
T cd02115         113 ITKVSTDRLKSL-----LENGILPILSGFGGTDE-K-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKV  185 (248)
T ss_pred             ceeeCHHHHHHH-----HhCCcEEEecCeEeccC-C-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcC
Confidence            444455444433     46789999999988762 4 6788999999999999999999999999999999999999999


Q ss_pred             CCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCC--------CCCCceEE
Q 012808          321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN--------PNAPGTLI  375 (456)
Q Consensus       321 ~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~--------p~~~GT~I  375 (456)
                      |++++|++|+|+|+.+|+++|+.++||+++.++.++++|++|.|+++        ++.+||+|
T Consensus       186 ~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I  248 (248)
T cd02115         186 PDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALALFTPDGGGTLI  248 (248)
T ss_pred             CcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999988        45667764

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=100.00  E-value=1.3e-31  Score=264.53  Aligned_cols=226  Identities=22%  Similarity=0.303  Sum_probs=178.0

Q ss_pred             cceEEEEeCccccC------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           80 QLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        80 ~~~~V~KFGGsSv~------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      ..++|+||||||+.      +.++++++++.|....  +.++|+|+||+++.+..++....                   
T Consensus         9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~-------------------   69 (266)
T PRK12314          9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDK-------------------   69 (266)
T ss_pred             CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeecccc-------------------
Confidence            35799999999999      7899999999998642  34567778998888876654210                   


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                                  .                       ......++.+.+.||.++..++..+|+++|+++     +++ ++
T Consensus        70 ------------~-----------------------~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~-ll  108 (266)
T PRK12314         70 ------------R-----------------------PTSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQI-LL  108 (266)
T ss_pred             ------------C-----------------------CCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-EE
Confidence                        0                       001234588999999999999999999999975     566 88


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeecc----CCCChhHHHHHHHHcCCceEEEee
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG----RGGSDLTATTIGKALGLQEIQVWK  307 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlg----RGGSD~tAa~lA~~L~A~~l~i~T  307 (456)
                      |.++|.+.+..    .+..+.+. .+++.|.|||+.+       |+.+++.+    +|++|++|++||.+|+|+.++|||
T Consensus       109 T~~~~~~~~~~----~~~~~~l~-~ll~~g~IPVv~~-------nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilT  176 (266)
T PRK12314        109 TRDDFDSPKSR----ANVKNTFE-SLLELGILPIVNE-------NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILS  176 (266)
T ss_pred             ecccccchHHH----HHHHHHHH-HHHHCCCEEEEcC-------CCCeeeccccceecchHHHHHHHHHHhCCCEEEEEe
Confidence            88888766542    22333333 3467899999954       45566666    899999999999999999999999


Q ss_pred             cCCccccCCCCCCCCCccccccCH--HHHHHHHHc-------CCCcchHHHHHHHHhCCCCEEEecCCCCC---------
Q 012808          308 DVDGVLTCDPNIHPHAKPVPYLTF--DEAAELAYF-------GAQVLHPQSMRPAREGDIPVRVKNSYNPN---------  369 (456)
Q Consensus       308 DV~GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa~~-------Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------  369 (456)
                      ||||||++||+.+|+|++|+.+++  +|..+++..       |..+.|++++..+.++|+|++|.|+++|+         
T Consensus       177 DVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~  256 (266)
T PRK12314        177 DIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGE  256 (266)
T ss_pred             CCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCC
Confidence            999999999999999999999987  666666532       34567788999999999999999988774         


Q ss_pred             CCceEEee
Q 012808          370 APGTLIRR  377 (456)
Q Consensus       370 ~~GT~I~~  377 (456)
                      ..||+|.+
T Consensus       257 ~~GT~i~~  264 (266)
T PRK12314        257 SIGTLFAP  264 (266)
T ss_pred             CCceEEcc
Confidence            46898864

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.98  E-value=5.1e-33  Score=269.25  Aligned_cols=233  Identities=34%  Similarity=0.447  Sum_probs=178.7

Q ss_pred             ceEEEEeCccccCCH--HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASA--ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR  157 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~--~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~  157 (456)
                      +++|+|||||++.++  + ++++++.|.... ...++||||++|+.+|.+++.......  ..+          ..+|..
T Consensus         1 k~~ViK~GGs~l~~~~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~--~~~----------~~r~~~   67 (242)
T PF00696_consen    1 KTIVIKLGGSSLTDKDEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPK--FVD----------GSRVTD   67 (242)
T ss_dssp             SEEEEEE-HHGHSSHSHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTS--EET----------HHCHBH
T ss_pred             CeEEEEECchhhCCchHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcc--cch----------hhhhhh
Confidence            578999999999998  7 999999998542 346679999999999999875321100  000          011111


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808          158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT  237 (456)
Q Consensus       158 ~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~  237 (456)
                      ....+..    -.....+|.+            ....+.+.+.|+.+++.++...+.+.|+.+...++..          
T Consensus        68 ~~~~~~~----~~~~~~~l~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  121 (242)
T PF00696_consen   68 IETGLII----TMAAAAELNR------------DALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDARE----------  121 (242)
T ss_dssp             HHHHHHH----HHHHHHHHHH------------HHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESSE----------
T ss_pred             hhhhHHH----HHHHhhcccc------------chhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhhh----------
Confidence            1110000    0000111111            4677889999999999999999998888777655431          


Q ss_pred             CcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808          238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP  317 (456)
Q Consensus       238 ~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP  317 (456)
                            .+...+.+     +++++.|||++||.+.+ .+|++++++++++|++|+.||.+|+|++++|||||||||++||
T Consensus       122 ------~~~~~i~~-----~l~~~~ipVv~g~~~~~-~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP  189 (242)
T PF00696_consen  122 ------VDKEAIRE-----LLEQGIIPVVSGFAGID-DDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADP  189 (242)
T ss_dssp             ------EHHHHHHH-----HHHTTSEEEEESEEEEE-TTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSST
T ss_pred             ------hHHHHHHH-----HHHCCCEEEEeCCcccC-CCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCC
Confidence                  12233333     24568999999999888 5899999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCHHHHHHHH------HcCCCcchHHHHHHHHhCCCCEEEec
Q 012808          318 NIHPHAKPVPYLTFDEAAELA------YFGAQVLHPQSMRPAREGDIPVRVKN  364 (456)
Q Consensus       318 ~~v~~Ak~i~~ls~~Ea~eLa------~~Ga~vlhp~a~~~a~~~~Ipv~I~n  364 (456)
                      +.+|+++++++|+|+|+.+|+      ++|++++||.|+++++++++|++|.|
T Consensus       190 ~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n  242 (242)
T PF00696_consen  190 RIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN  242 (242)
T ss_dssp             TTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence            999999999999999999999      89999999999999999999999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=99.97  E-value=5.5e-31  Score=258.00  Aligned_cols=221  Identities=24%  Similarity=0.394  Sum_probs=173.3

Q ss_pred             EEEEeCccccCCHH------HHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808           83 CVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL  154 (456)
Q Consensus        83 ~V~KFGGsSv~s~~------~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~  154 (456)
                      +|+|||||++.+.+      .++++++.|++..  +.+.|+|+||+++.+...++                         
T Consensus         2 iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~-------------------------   56 (251)
T cd04242           2 IVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLG-------------------------   56 (251)
T ss_pred             EEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhc-------------------------
Confidence            79999999999876      9999999998643  34567788887776632111                         


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808          155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD  234 (456)
Q Consensus       155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~  234 (456)
                               ...                    +......++.+++.||..+..+++.+|+++|+++.     ++ ++|++
T Consensus        57 ---------~~~--------------------~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-----q~-l~t~~  101 (251)
T cd04242          57 ---------LEK--------------------RPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVA-----QI-LLTRD  101 (251)
T ss_pred             ---------cCc--------------------CCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-----EE-EEehh
Confidence                     000                    00011345789999999999999999999999963     44 67777


Q ss_pred             CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceee--ccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vtt--lgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                      +|.++..    +....+. ...+++.+.|||+.+       +|.+++  +++|++|++|+.+|.+|+|++++||||||||
T Consensus       102 ~~~~~~~----~~~~~~~-i~~ll~~g~iPVv~~-------~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGv  169 (251)
T cd04242         102 DFEDRKR----YLNARNT-LETLLELGVIPIINE-------NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGL  169 (251)
T ss_pred             HhcchHH----HHHHHHH-HHHHHHCCCEEEEcC-------CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEE
Confidence            7765532    1222222 334567889999954       345666  8999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccC--HHHHHHHH-----HcCCCcchH--HHHHHHHhCCCCEEEecCCCCC---------CCceE
Q 012808          313 LTCDPNIHPHAKPVPYLT--FDEAAELA-----YFGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------APGTL  374 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls--~~Ea~eLa-----~~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~  374 (456)
                      |++||+.+|++++|++++  ++|+.+++     .+|+.+|+|  +++..+.++|+|++|.|++.|+         ..||+
T Consensus       170 y~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~  249 (251)
T cd04242         170 YDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTL  249 (251)
T ss_pred             EeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeE
Confidence            999999999999999999  99999986     678899999  6899999999999999998774         35776


Q ss_pred             E
Q 012808          375 I  375 (456)
Q Consensus       375 I  375 (456)
                      |
T Consensus       250 i  250 (251)
T cd04242         250 F  250 (251)
T ss_pred             e
Confidence            6

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>PRK14557 pyrH uridylate kinase; Provisional

Probab=99.97  E-value=1.1e-29  Score=248.00  Aligned_cols=216  Identities=25%  Similarity=0.343  Sum_probs=167.0

Q ss_pred             ceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           81 LTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        81 ~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      ..+|+||||+++.+       ++.++++++.|+...  +.+++||||| |   |.+..  +                   
T Consensus         5 ~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGg-G---n~~rg--~-------------------   59 (247)
T PRK14557          5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-G---NIFRG--H-------------------   59 (247)
T ss_pred             cEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECC-c---HHHHH--H-------------------
Confidence            56899999999988       789999999998642  3467888887 3   43431  0                   


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                            .++.++.                         +....|+++++||++|+.+++.+|++.       ++.+.+++
T Consensus        60 ------~a~~~~~-------------------------~~~~~D~ig~~g~~lna~ll~~~l~~~-------~~~~~~i~  101 (247)
T PRK14557         60 ------LAEEWGI-------------------------DRVEADNIGTLGTIINSLMLRGVLTSK-------TNKEVRVM  101 (247)
T ss_pred             ------HHHhcCC-------------------------ChHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCceeEE
Confidence                  1111221                         234569999999999999999999884       34455677


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEee-cCC
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD  310 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~T-DV~  310 (456)
                      |+..+.... ..  +  ...++.+. +++|.|||++||+|..    .++      +|++|+++|..++|+.+++|| |||
T Consensus       102 t~~~~~~~~-~~--~--~~~~~~~~-l~~g~VvV~~G~~g~~----~~s------tD~lAallA~~l~Ad~li~~ttdVd  165 (247)
T PRK14557        102 TSIPFNAVA-EP--Y--IRLRAVHH-LDNGYIVIFGGGNGQP----FVT------TDYPSVQRAIEMNSDAILVAKQGVD  165 (247)
T ss_pred             ecccccccc-ch--h--hHHHHHHH-HhCCCEEEEECCcCCC----ccC------hHHHHHHHHHHhCCCEEEEecCCcC
Confidence            777665321 11  1  11223332 4677899999998853    344      899999999999999999995 999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEeec
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS  378 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~  378 (456)
                      ||||+||+.+|+|++|++++|+|+.   +.+.++|||+|+++|++++||++|.|+.+|+         ..||+|.+.
T Consensus       166 GvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~  239 (247)
T PRK14557        166 GVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD  239 (247)
T ss_pred             EeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecC
Confidence            9999999999999999999999884   4678899999999999999999999998775         479999754

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=99.97  E-value=6.4e-30  Score=247.14  Aligned_cols=204  Identities=23%  Similarity=0.326  Sum_probs=158.8

Q ss_pred             EEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808           83 CVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL  154 (456)
Q Consensus        83 ~V~KFGGsSv~s------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~  154 (456)
                      +|+|||||++.+      .+.++++++.|++..  +.+.++|+|| |...+....                         
T Consensus         2 iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~gg-G~~a~~~~~-------------------------   55 (229)
T cd04239           2 IVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGG-GNIARGYIA-------------------------   55 (229)
T ss_pred             EEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-ChHHhhHHH-------------------------
Confidence            699999999988      789999999998642  2355666665 433332110                         


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808          155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD  234 (456)
Q Consensus       155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~  234 (456)
                           ...                         ..++...|.+.+.|+++|+.+|+.+|+++|+++..+++.+++.++. 
T Consensus        56 -----~~~-------------------------~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~-  104 (229)
T cd04239          56 -----AAR-------------------------GMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE-  104 (229)
T ss_pred             -----hhc-------------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc-
Confidence                 000                         0122345788889999999999999999999999988876532211 


Q ss_pred             CCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808          235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT  314 (456)
Q Consensus       235 ~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t  314 (456)
                      .        .+...    +. .+++.+.|||++||.|...          +.+|++|+.+|.+|+|+++++||||||||+
T Consensus       105 ~--------~~~~~----l~-~~l~~g~ipVi~g~~g~~~----------~~sD~~A~~lA~~l~a~~li~~tdVdGvy~  161 (229)
T cd04239         105 P--------YIRRR----AI-RHLEKGRIVIFGGGTGNPG----------FTTDTAAALRAEEIGADVLLKATNVDGVYD  161 (229)
T ss_pred             c--------ccHHH----HH-HHHhCCCEEEEeCccCCCC----------CCcHHHHHHHHHHcCCCEEEEEECCCcccC
Confidence            0        12222    22 2356789999999986431          139999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC
Q 012808          315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN  369 (456)
Q Consensus       315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~  369 (456)
                      +||+.+|+|++|++++|+|+.+++.   +++||.+++++.++++|++|.|+++|+
T Consensus       162 ~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~~~~~i~v~I~~g~~~~  213 (229)
T cd04239         162 ADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLCRRNKIPIIVFNGLKPG  213 (229)
T ss_pred             CCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHHHHCCCeEEEECCCChh
Confidence            9999999999999999999998864   889999999999999999999998874

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>PRK00358 pyrH uridylate kinase; Provisional

Probab=99.97  E-value=9.1e-30  Score=246.24  Aligned_cols=212  Identities=25%  Similarity=0.337  Sum_probs=159.8

Q ss_pred             ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        81 ~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      +++|+|||||++.       +.+.++++++.|++..  +.++++|+|+ |.....                         
T Consensus         1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gG-G~~a~~-------------------------   54 (231)
T PRK00358          1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG-GNIFRG-------------------------   54 (231)
T ss_pred             CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHH-------------------------
Confidence            4689999999998       6789999999998643  2355666663 322111                         


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                         |...  .++                         .+....|.+.++++++|+.+++..|+++|+++..+++.+.+.+
T Consensus        55 ---~~~~--~~~-------------------------~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~  104 (231)
T PRK00358         55 ---YIGA--AAG-------------------------MDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQV  104 (231)
T ss_pred             ---HHHh--hcC-------------------------CChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccc
Confidence               0000  011                         1223457788889999999999999999999986666544322


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG  311 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G  311 (456)
                      +.     .  .  ..+    .+. .+++.+.|||++||.+..          .+.+|++|+.+|.+|+|+++++||||||
T Consensus       105 ~~-----~--~--~~~----~~~-~~l~~g~vPVv~g~~~~~----------~~ssD~~A~~lA~~l~A~~li~~tdVdG  160 (231)
T PRK00358        105 AE-----P--Y--IRR----RAI-RHLEKGRVVIFAAGTGNP----------FFTTDTAAALRAEEIGADVLLKATNVDG  160 (231)
T ss_pred             cC-----c--c--cHH----HHH-HHHHCCCEEEEECCCCCC----------CCCchHHHHHHHHHcCCCEEEEeeCcCc
Confidence            21     0  0  112    232 236788999999865421          1238999999999999999999999999


Q ss_pred             cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808          312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI  375 (456)
Q Consensus       312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I  375 (456)
                      ||++||+.+|+|++|++++|+|+.++   |++++||+++++|.+++||++|.|+++|+         ..||+|
T Consensus       161 Vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i  230 (231)
T PRK00358        161 VYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLV  230 (231)
T ss_pred             eEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEe
Confidence            99999999999999999999998777   99999999999999999999999998775         357766

>PRK14558 pyrH uridylate kinase; Provisional

Probab=99.97  E-value=2.1e-29  Score=243.91  Aligned_cols=161  Identities=22%  Similarity=0.306  Sum_probs=130.1

Q ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCC
Q 012808          190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF  269 (456)
Q Consensus       190 ~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gf  269 (456)
                      ++...|.++.+||+||+.+++.+|.+.|+++.++++    +....+     +...+..    .+.. +++.+.|||++||
T Consensus        61 ~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~----~~~~~~-----~~~~~~~----~i~~-ll~~g~vpV~~G~  126 (231)
T PRK14558         61 SPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQ----IVNLPS-----VEPINYD----DIEL-YFRAGYIVIFAGG  126 (231)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecc----ccccch-----hhhhhHH----HHHH-HHHCCCEEEEECC
Confidence            345678899999999999999999999999999885    222111     1111222    2222 3567899999998


Q ss_pred             CcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHH
Q 012808          270 LGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS  349 (456)
Q Consensus       270 ig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a  349 (456)
                      .+..          .+.+|++|+++|..|+|+.+++||||||||++||+++|+|+++++++|+|+.++   |++++||++
T Consensus       127 ~~~~----------~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a  193 (231)
T PRK14558        127 TSNP----------FFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEA  193 (231)
T ss_pred             CCCC----------CCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---CcccccHHH
Confidence            6532          123899999999999999999999999999999999999999999999999886   889999999


Q ss_pred             HHHHHhCCCCEEEecCCCCC---------CCceEEee
Q 012808          350 MRPAREGDIPVRVKNSYNPN---------APGTLIRR  377 (456)
Q Consensus       350 ~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~  377 (456)
                      +++|+++|||++|.|+++|+         ..||+|.+
T Consensus       194 ~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~  230 (231)
T PRK14558        194 FSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP  230 (231)
T ss_pred             HHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence            99999999999999998764         35777643

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.97  E-value=1.1e-29  Score=246.00  Aligned_cols=213  Identities=24%  Similarity=0.341  Sum_probs=163.2

Q ss_pred             ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        81 ~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      +++|+|||||++.       +.+.++++++.|++..  +.++|+|+|| |..... ..    +                 
T Consensus         1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGg-G~~~~~-~~----~-----------------   57 (231)
T cd04254           1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG-GNIFRG-AS----A-----------------   57 (231)
T ss_pred             CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-Cccccc-ch----h-----------------
Confidence            4689999999996       7899999999998643  3467788887 422100 00    0                 


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                              ..++.                         .....|.+.++++++|+.+++..|++.|+++.++++.+.+.+
T Consensus        58 --------~~~~~-------------------------~~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~  104 (231)
T cd04254          58 --------AEAGM-------------------------DRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGV  104 (231)
T ss_pred             --------hhcCC-------------------------CchhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhh
Confidence                    00111                         111236677889999999999999999999999999875222


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG  311 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G  311 (456)
                      +.         ..+...+.     .+++.+.|||++||.|..    ..+      +|++|+.+|.+|+|+++++||||||
T Consensus       105 ~~---------~~~~~~l~-----~~l~~g~ipV~~g~~G~~----~~~------~D~~a~~lA~~l~a~~l~~~tdVdG  160 (231)
T cd04254         105 AE---------PYIRRRAI-----RHLEKGRVVIFAGGTGNP----FFT------TDTAAALRAIEINADVILKATKVDG  160 (231)
T ss_pred             hc---------ccCHHHHH-----HHHHCCCEEEEECCcCCC----CCC------cHHHHHHHHHHcCCCEEEEEeCCCE
Confidence            10         11222222     235678899999987632    122      8999999999999999999999999


Q ss_pred             cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      ||++||+.+|+++++++++++|+.+   +|++++|+.++++|++++||++|.|+++|+         ..||+|+
T Consensus       161 vy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T cd04254         161 VYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS  231 (231)
T ss_pred             EEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence            9999999999999999999999866   488999999999999999999999998775         4577763

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>TIGR02075 pyrH_bact uridylate kinase

Probab=99.96  E-value=2.2e-28  Score=237.10  Aligned_cols=213  Identities=24%  Similarity=0.352  Sum_probs=161.7

Q ss_pred             ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        81 ~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      .++|+|||||++.       +.+.++++++.|++..  +.+.|+|+|| |   +.+...                     
T Consensus         2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~-G---s~~~~~---------------------   56 (233)
T TIGR02075         2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG-G---NIFRGV---------------------   56 (233)
T ss_pred             CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-C---HHHHHH---------------------
Confidence            4789999999998       5788999999998543  2345666666 3   222111                     


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                          .  ++.++.                         +....|.+.++++++++.+|+.+|++.|+++..+++.+.+ .
T Consensus        57 ----~--a~~~~~-------------------------~~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-~  104 (233)
T TIGR02075        57 ----S--AKELGI-------------------------DRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMP-Q  104 (233)
T ss_pred             ----H--HHhcCC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCC-C
Confidence                0  111221                         1112467889999999999999999999999999987643 1


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeec-CC
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VD  310 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TD-V~  310 (456)
                      +...+        ...    .+.+ +++.+.|||++||.|..    ..      .+|++|+++|..|+|+.++|||| ||
T Consensus       105 ~~~~~--------~~~----~i~~-ll~~g~VpV~~g~~g~~----~~------s~D~~a~~lA~~l~a~~li~~td~Vd  161 (233)
T TIGR02075       105 ICESY--------IRR----KAIK-HLEKGKVVIFSGGTGNP----FF------TTDTAAALRAIEINADVILKGTNGVD  161 (233)
T ss_pred             Ccccc--------CHH----HHHH-HHHCCCEEEEECCCCCC----CC------CchHHHHHHHHHcCCCEEEEeecccC
Confidence            11111        112    2222 35678899999987642    12      28999999999999999999999 99


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      |||++||+.+|+++++++++|+|+.++   |++++||.++++|.+++||++|.|+.+|+         ..||+|+
T Consensus       162 Gvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~  233 (233)
T TIGR02075       162 GVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS  233 (233)
T ss_pred             eEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence            999999999999999999999998764   78899999999999999999999988764         4677763

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.95  E-value=1.7e-27  Score=229.11  Aligned_cols=201  Identities=22%  Similarity=0.306  Sum_probs=158.1

Q ss_pred             EEEEeCccccCC---HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        83 ~V~KFGGsSv~s---~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      +|+|||||++.+   .+.++++++.|++..+.+++++|+++|..++.+.+..                            
T Consensus         2 iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~~a~~~~~~~----------------------------   53 (221)
T cd04253           2 IVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVA----------------------------   53 (221)
T ss_pred             EEEEeccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------------------------
Confidence            699999999998   6999999999996543345666777787776655422                            


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA  239 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a  239 (456)
                      ++++.                         +....|.+...++++|+.+++.+|. .|++++.++               
T Consensus        54 ~~~~~-------------------------~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~---------------   92 (221)
T cd04253          54 RKLGA-------------------------SEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS---------------   92 (221)
T ss_pred             HHcCC-------------------------CHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC---------------
Confidence            11211                         2234577888899999999998887 777654331               


Q ss_pred             ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808          240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI  319 (456)
Q Consensus       240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~  319 (456)
                            ...+.+     +++.+.|||++||++     + .+      +|++|+.+|..|+|+.+++||||||||++||+.
T Consensus        93 ------~~~~~~-----~l~~g~vpv~~G~~~-----~-~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~  149 (221)
T cd04253          93 ------YEEALE-----AMFTGKIVVMGGTEP-----G-QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRK  149 (221)
T ss_pred             ------HHHHHH-----HHHcCCeEEEECCCC-----C-Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCC
Confidence                  112222     245678999999874     2 22      799999999999999999999999999999999


Q ss_pred             CCCCccccccCHHHHHHHHHc-----CC-CcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808          320 HPHAKPVPYLTFDEAAELAYF-----GA-QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI  375 (456)
Q Consensus       320 v~~Ak~i~~ls~~Ea~eLa~~-----Ga-~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I  375 (456)
                      +|+|++|++++++|+.++++.     |. .++|+.+++++.++++|++|.|+.+|+         ..||+|
T Consensus       150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I  220 (221)
T cd04253         150 DPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII  220 (221)
T ss_pred             CCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence            999999999999999999876     54 688999999999999999999987764         357776

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=99.95  E-value=3.9e-27  Score=241.65  Aligned_cols=225  Identities=20%  Similarity=0.316  Sum_probs=172.0

Q ss_pred             cceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCc-hHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTT-NKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vT-d~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      ..++|+||||++|.+      .+.+.++++.|....  +.++|+|+|++-... +.|                       
T Consensus         5 ~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l-----------------------   61 (368)
T PRK13402          5 WKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKL-----------------------   61 (368)
T ss_pred             CcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCcccc-----------------------
Confidence            367999999999985      489999999998542  345677777641111 111                       


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                                  +.               .+      ......++.+.+.||.++..++...|+++|+++.     ++ +
T Consensus        62 ------------~~---------------~~------~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~a-----qv-L  102 (368)
T PRK13402         62 ------------GF---------------ID------RPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAA-----QL-L  102 (368)
T ss_pred             ------------CC---------------CC------CCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEE-----EE-E
Confidence                        00               00      0011245788899999999999999999999984     34 5


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceee--ccCCCChhHHHHHHHHcCCceEEEeec
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKD  308 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vtt--lgRGGSD~tAa~lA~~L~A~~l~i~TD  308 (456)
                      +|.+++.+.+    .|.++++.+.. +++.+.|||+..       ++.+++  +++|++|++|+++|.+++|+.++||||
T Consensus       103 lT~~d~~~~~----~y~n~~~~l~~-LL~~g~IPIine-------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTD  170 (368)
T PRK13402        103 LTHGDLRDRE----RYINIRNTINV-LLERGILPIINE-------NDAVTTDRLKVGDNDNLSAMVAALADADTLIILSD  170 (368)
T ss_pred             EecchhhhHH----HHHHHHHHHHH-HHHCCcEEEEeC-------CCcEeecccccCChHHHHHHHHHHhCCCEEEEEec
Confidence            6766654322    24444554443 568899999953       233555  889999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCccccccCH--HHHHHHH-----HcCCCcchH--HHHHHHHhCCCCEEEecCCCCC---------C
Q 012808          309 VDGVLTCDPNIHPHAKPVPYLTF--DEAAELA-----YFGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------A  370 (456)
Q Consensus       309 V~GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa-----~~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~  370 (456)
                      |||||++||+.+|+|++|+++++  +|+.+++     .+|..+|+|  +++..|.++|+|++|.|+.+|+         .
T Consensus       171 VdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~  250 (368)
T PRK13402        171 IDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQN  250 (368)
T ss_pred             CCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCC
Confidence            99999999999999999999997  7787776     467889999  5899999999999999998873         5


Q ss_pred             CceEEeec
Q 012808          371 PGTLIRRS  378 (456)
Q Consensus       371 ~GT~I~~~  378 (456)
                      .||+|.+.
T Consensus       251 ~GT~i~~~  258 (368)
T PRK13402        251 PGTYFTPE  258 (368)
T ss_pred             CceEEecC
Confidence            79999874

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=99.95  E-value=9.2e-27  Score=223.90  Aligned_cols=202  Identities=24%  Similarity=0.261  Sum_probs=154.7

Q ss_pred             EEEEeCccccCC---HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        83 ~V~KFGGsSv~s---~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      +|+|||||++.+   .+.++++++.|++..+.+.+++|+++|..++.+++.+                            
T Consensus         1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~~a~~~~~~~----------------------------   52 (221)
T TIGR02076         1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGKTARRYIGVA----------------------------   52 (221)
T ss_pred             CEEEechhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcHHHHHHHHHH----------------------------
Confidence            489999999988   5999999999986543245655556665554443321                            


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA  239 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a  239 (456)
                      ++++.                         +....|.+...++++|+.++...|+..++++...+..             
T Consensus        53 ~~~~~-------------------------~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~~-------------   94 (221)
T TIGR02076        53 RELGA-------------------------SETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENFE-------------   94 (221)
T ss_pred             HHcCC-------------------------CHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCHH-------------
Confidence            12221                         2335577888899999999999988888876533211             


Q ss_pred             ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808          240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI  319 (456)
Q Consensus       240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~  319 (456)
                              ...+     .+..+.+||++||++     | ++      +|++|+.+|.+|+|+.+++||||||||++||+.
T Consensus        95 --------~~~~-----~l~~g~ipv~~G~~~-----~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~  149 (221)
T TIGR02076        95 --------EALE-----AMSLGKIVVMGGTHP-----G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKK  149 (221)
T ss_pred             --------HHHH-----HHHcCCEEEEcCCCC-----C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCC
Confidence                    1111     135678999999862     2 22      799999999999999999999999999999999


Q ss_pred             CCCCccccccCHHHHHHHHH---cCC---CcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808          320 HPHAKPVPYLTFDEAAELAY---FGA---QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI  375 (456)
Q Consensus       320 v~~Ak~i~~ls~~Ea~eLa~---~Ga---~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I  375 (456)
                      +|+|++|++++++|+.+++.   +|.   ..+|+.+++.+.+.++|++|.|+.+|+         ..||+|
T Consensus       150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i  220 (221)
T TIGR02076       150 DPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII  220 (221)
T ss_pred             CCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence            99999999999999999986   333   367999999999999999999988774         357776

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.94  E-value=1.5e-26  Score=226.74  Aligned_cols=224  Identities=18%  Similarity=0.292  Sum_probs=170.5

Q ss_pred             EEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           83 CVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        83 ~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      .|+|||||++.+++.++++++.|+...  ...++|+||++|+.+|.|++...                            
T Consensus         1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g----------------------------   52 (252)
T cd04249           1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLN----------------------------   52 (252)
T ss_pred             CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC----------------------------
Confidence            389999999999989999999998542  34678999999999999886321                            


Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC--
Q 012808          161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT--  237 (456)
Q Consensus       161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~-s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~--  237 (456)
                         .+..           +.++++.   .++...+.+. .+++++|..+++.++ ++|++++++++.+.++++.+.++  
T Consensus        53 ---~~~~-----------~~~g~rv---t~~~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~  114 (252)
T cd04249          53 ---FPSE-----------KKNGLRV---TPKEQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPE  114 (252)
T ss_pred             ---CCCE-----------EECCEec---CCHHHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCC
Confidence               1100           1122222   2445556654 347899999998865 89999999999998899886543  


Q ss_pred             --C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808          238 --N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT  314 (456)
Q Consensus       238 --~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t  314 (456)
                        . .++.+.+.+.+.+     +++.+.|||++| +|.+ .+|++++++   +|++|+.+|.+|+|+ +++||||+|||+
T Consensus       115 ~~~~G~v~~i~~~~l~~-----ll~~g~ipVi~~-~g~~-~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~  183 (252)
T cd04249         115 LGAVGKATANDPSLLND-----LLKAGFLPIISS-IGAD-DQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLD  183 (252)
T ss_pred             CCcccceEEEcHHHHHH-----HHHCCCEEEECC-CEEC-CCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCC
Confidence              2 3444444444433     356789999997 6877 479999998   999999999999999 689999999999


Q ss_pred             CCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHHHHHHHHhCCCCEEEecCCCCC
Q 012808          315 CDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN  369 (456)
Q Consensus       315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~  369 (456)
                      .||      ++|++++++|+.++...|.     ...++.+++.+++.+++++|.|+..|+
T Consensus       184 ~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~  237 (252)
T cd04249         184 ADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPE  237 (252)
T ss_pred             CCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence            876      5799999999999987653     334456788888888999999987663

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.94  E-value=4e-26  Score=226.97  Aligned_cols=230  Identities=21%  Similarity=0.296  Sum_probs=169.7

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .+.|+|||||++.+++.+.++++.|...  .+.++|+|++|++.+++.|.+.+..                         
T Consensus        15 ~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~-------------------------   69 (279)
T cd04250          15 KTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIE-------------------------   69 (279)
T ss_pred             CEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCC-------------------------
Confidence            4799999999999988888888887732  2346788888877677666553211                         


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                             ..           +.+|++.+.+.+....+.+++ | ++|..+ .+.|++.|++++++++.+.++++.+.++.
T Consensus        70 -------~~-----------~~~g~r~t~~~~~~~~~~~~~-g-~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~  128 (279)
T cd04250          70 -------SE-----------FVNGLRVTDEETMEIVEMVLV-G-KVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDA  128 (279)
T ss_pred             -------CE-----------eECCeecCCHHHHHHHHHHHc-C-chHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcc
Confidence                   00           111222222111122234444 7 688886 77899999999999999988999876652


Q ss_pred             ------------cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEe
Q 012808          239 ------------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW  306 (456)
Q Consensus       239 ------------a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~  306 (456)
                                  .++...+...+.+     +++.+.|||++| ++.+ ..|++++++   +|++|+.+|.+|+|+++++|
T Consensus       129 ~~~~~~~~~~~~g~i~~i~~~~i~~-----ll~~g~IPVi~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~A~~li~l  198 (279)
T cd04250         129 TVIEEIIDLGFVGEVTEVNPELLET-----LLEAGYIPVIAP-VGVG-EDGETYNIN---ADTAAGAIAAALKAEKLILL  198 (279)
T ss_pred             cccCCCcccCcccceEEEcHHHHHH-----HHHCCCeEEEcC-CccC-CCCcEEEeC---HHHHHHHHHHHhCCCEEEEE
Confidence                        2343444433332     457789999999 6777 478888887   99999999999999999999


Q ss_pred             ecCCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC
Q 012808          307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN  369 (456)
Q Consensus       307 TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~  369 (456)
                      |||+|||++||+   ++++|++++++|+.++++.|  ...|.++  ++..+.+++++ ++|.|+.+|+
T Consensus       199 tdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~  263 (279)
T cd04250         199 TDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPH  263 (279)
T ss_pred             ECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence            999999999984   47999999999999998643  3577775  66677788886 9999987764

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=99.94  E-value=1.3e-25  Score=231.42  Aligned_cols=227  Identities=23%  Similarity=0.369  Sum_probs=167.6

Q ss_pred             cceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      .+++|+|||||++.+      .+.+.++++.|....  +.++|+|+|++-+....                         
T Consensus         8 ~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGai~~g~~-------------------------   62 (372)
T PRK05429          8 ARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGAVAAGRE-------------------------   62 (372)
T ss_pred             CCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccHhhhhHh-------------------------
Confidence            357999999999986      789999999998653  23555666543111110                         


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                               .+++...                    ......++.+.+.||...+.++..+|+++|+++..     + ++
T Consensus        63 ---------~l~l~~~--------------------~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~q-----i-l~  107 (372)
T PRK05429         63 ---------RLGLPER--------------------PKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQ-----I-LL  107 (372)
T ss_pred             ---------hcCCCCC--------------------CCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEE-----E-Ee
Confidence                     1111100                    01123457788999999999999999999999755     3 46


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCcee--eccCCCChhHHHHHHHHcCCceEEEeecC
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT--TLGRGGSDLTATTIGKALGLQEIQVWKDV  309 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vt--tlgRGGSD~tAa~lA~~L~A~~l~i~TDV  309 (456)
                      |.+++.+..    .+.+..+.+ ..+++.+.|||++.       ++.+.  .+++|++|++|+++|.+|+|+.++|||||
T Consensus       108 t~~d~~~~~----~~ln~~~~i-~~Ll~~g~IPVi~~-------nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDV  175 (372)
T PRK05429        108 TRDDLEDRE----RYLNARNTL-RTLLELGVVPIINE-------NDTVATDEIKFGDNDTLSALVANLVEADLLILLTDV  175 (372)
T ss_pred             ehhHhhhhh----HhhhHHHHH-HHHHHCCCEEEEcC-------CCccceecccccChHHHHHHHHHHcCCCEEEEecCC
Confidence            665553211    111222222 33567899999964       22222  36889999999999999999999999999


Q ss_pred             CccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--HHHHHHHhCCCCEEEecCCCCC---------CC
Q 012808          310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------AP  371 (456)
Q Consensus       310 ~GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~  371 (456)
                      ||||++||+.+|++++|+++++  +|+.+++.     +|..+|+|  +++..+.++|+|++|.|+.+|+         ..
T Consensus       176 dGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~  255 (372)
T PRK05429        176 DGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAV  255 (372)
T ss_pred             CeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCC
Confidence            9999999999999999999998  67888863     67889999  5899999999999999987763         57


Q ss_pred             ceEEeec
Q 012808          372 GTLIRRS  378 (456)
Q Consensus       372 GT~I~~~  378 (456)
                      ||+|.+.
T Consensus       256 GT~i~~~  262 (372)
T PRK05429        256 GTLFLPQ  262 (372)
T ss_pred             CEEEeeC
Confidence            9999875

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.94  E-value=9.9e-26  Score=224.52  Aligned_cols=236  Identities=23%  Similarity=0.328  Sum_probs=171.8

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .++|+||||+++.+++.+..+++.|....+ ..++||||++|+.++.+++...                           
T Consensus        24 ~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g---------------------------   76 (283)
T PRK00942         24 KTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLG---------------------------   76 (283)
T ss_pred             CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCC---------------------------
Confidence            468999999999999999999988874321 2346899999999998876211                           


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC---
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF---  236 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~---  236 (456)
                          ....           +.+|++.+.+.+-...+.+++ | +++..++ ++|+++|+++.++++.+.++++.+++   
T Consensus        77 ----~~~~-----------~~~g~~~t~~~~l~~~~~a~~-G-~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~  138 (283)
T PRK00942         77 ----IESE-----------FVNGLRVTDAETMEVVEMVLA-G-KVNKELV-SLINKHGGKAVGLSGKDGGLITAKKLEED  138 (283)
T ss_pred             ----CCcE-----------eeCCEecCCHHHHHHHHHHHc-C-chHHHHH-HHHHhCCCCccceeeccCCEEEEEECCCC
Confidence                0000           112222211111112234444 7 7787766 78999999999999999989998655   


Q ss_pred             ---CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          237 ---TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       237 ---~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                         +. .++...+...+.+     +++.|.|||+++ ++.+ .+|++++++   +|++|+.+|.+|+|++++|||||+||
T Consensus       139 ~~~~~~g~i~~i~~~~l~~-----ll~~g~vpVv~~-~~~~-~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~Gv  208 (283)
T PRK00942        139 EDLGFVGEVTPVNPALLEA-----LLEAGYIPVISP-IGVG-EDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPGV  208 (283)
T ss_pred             CCCccccceEEECHHHHHH-----HHHCCCEEEEcC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCccc
Confidence               21 3444444443333     357789999997 6877 478999897   99999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHH--HHHHHHhCCC-CEEEecCCCCC----------CCceEEee
Q 012808          313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDI-PVRVKNSYNPN----------APGTLIRR  377 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~I-pv~I~n~~~p~----------~~GT~I~~  377 (456)
                      |++      ++++|++++++|+.+++..+.  ..|.|+  ++..+.++|+ +++|.|+..|+          ..||+|.+
T Consensus       209 ~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  282 (283)
T PRK00942        209 LDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP  282 (283)
T ss_pred             ccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence            986      478999999999999987642  466665  5556667887 59999876654          36888865

>TIGR00761 argB acetylglutamate kinase

Probab=99.94  E-value=7.6e-26  Score=218.85  Aligned_cols=216  Identities=19%  Similarity=0.264  Sum_probs=159.9

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      ++|+||||+++.++  ++++++.|.... ...++|+||++++.+|.+++....                           
T Consensus         1 ~~ViK~GGs~l~~~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~---------------------------   51 (231)
T TIGR00761         1 TIVIKIGGAAISDL--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGI---------------------------   51 (231)
T ss_pred             CEEEEEChHHHhcc--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCC---------------------------
Confidence            47999999999987  889999888542 233467889999999988763210                           


Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC--
Q 012808          161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT--  237 (456)
Q Consensus       161 ~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~--  237 (456)
                          +..           +.++++   ..++...+.+ .++++++|..+++ .|+++|++++++++.+.++++.+.+.  
T Consensus        52 ----~~~-----------~~~g~r---~t~~~~~~~~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~  112 (231)
T TIGR00761        52 ----PPE-----------FKNGLR---VTDKETLEVVEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTARSLDKE  112 (231)
T ss_pred             ----CCE-----------ecCCCc---cCCHHHHHHHHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEEEECCCc
Confidence                000           011111   1223333332 2335688988776 79999999999999998888876443  


Q ss_pred             ---C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808          238 ---N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL  313 (456)
Q Consensus       238 ---~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~  313 (456)
                         + .++...+.+.+.+     +++.+.|||++| +|.+ .+|++++++   +|++|+.+|.+|+|++++|||||+|||
T Consensus       113 ~~~~~g~i~~i~~~~i~~-----~l~~g~IPVi~~-~~~~-~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~  182 (231)
T TIGR00761       113 DLGYVGEIKKVNKALLEA-----LLKAGYIPVISS-LALT-AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGIL  182 (231)
T ss_pred             cCCcccceEEEcHHHHHH-----HHHCCCeEEECC-CccC-CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCee
Confidence               2 3444444444433     356789999999 5777 489999997   999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCCE
Q 012808          314 TCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIPV  360 (456)
Q Consensus       314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ipv  360 (456)
                      ++||+     ++|++|+++|+.+|++.|  ...|.||  ++..+.++|++-
T Consensus       183 ~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~  228 (231)
T TIGR00761       183 NGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKS  228 (231)
T ss_pred             cCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCE
Confidence            99884     689999999999999876  4678886  677777888863

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>TIGR01027 proB glutamate 5-kinase

Probab=99.93  E-value=8.4e-25  Score=224.77  Aligned_cols=225  Identities=22%  Similarity=0.383  Sum_probs=165.0

Q ss_pred             eEEEEeCccccCCHH------HHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD  153 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~------~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~  153 (456)
                      ++|+|||||++.+++      .++++++.|....  +.++|+|+|++  +.-     +.                     
T Consensus         2 riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~--~~~-----g~---------------------   53 (363)
T TIGR01027         2 RIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGA--IAA-----GF---------------------   53 (363)
T ss_pred             eEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcH--Hhc-----Cc---------------------
Confidence            589999999999854      4889999988643  23455666643  210     00                     


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808          154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT  233 (456)
Q Consensus       154 ~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~  233 (456)
                            +.+++...                    ...-..++.+.+.|+.++..++...|.++|+++.     ++ ++|.
T Consensus        54 ------~~lg~~~~--------------------~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~a-----qi-llt~  101 (363)
T TIGR01027        54 ------EALGLPER--------------------PKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKVA-----QI-LLTR  101 (363)
T ss_pred             ------cccCCCCC--------------------ccchHHHHHHHHhChHHHHHHHHHHHHHcCCeEE-----EE-EEec
Confidence                  01111110                    0112344678899999999999999999999963     33 6777


Q ss_pred             cCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCce--eeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808          234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI--TTLGRGGSDLTATTIGKALGLQEIQVWKDVDG  311 (456)
Q Consensus       234 ~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~v--ttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G  311 (456)
                      ++|.+.+    .+.+.+..+. .+++.+.|||++-       ++.+  +.+++|++|++|+++|.+++|+.++|||||||
T Consensus       102 ~d~~~~~----~~lna~~~i~-~Ll~~g~iPVi~e-------nd~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdG  169 (363)
T TIGR01027       102 ADFSDRE----RYLNARNTLE-ALLELGVVPIINE-------NDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDG  169 (363)
T ss_pred             cchhhHH----HHHHHHHHHH-HHHhCCCEEEEeC-------CCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCc
Confidence            7665421    2222333333 3467889999952       2222  44789999999999999999999999999999


Q ss_pred             cccCCCCCCCCCccccccCHH--HHHHHH-----HcCCCcchHH--HHHHHHhCCCCEEEecCCCCC---------CCce
Q 012808          312 VLTCDPNIHPHAKPVPYLTFD--EAAELA-----YFGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---------APGT  373 (456)
Q Consensus       312 V~taDP~~v~~Ak~i~~ls~~--Ea~eLa-----~~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~GT  373 (456)
                      ||++||+.+|+|++|+++++.  +..+++     .+|...|+|+  ++..|.++|+|++|.|+.+|+         ..||
T Consensus       170 Vy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT  249 (363)
T TIGR01027       170 LYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGT  249 (363)
T ss_pred             ccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcE
Confidence            999999999999999999964  455565     4678899998  899999999999999998764         4699


Q ss_pred             EEeec
Q 012808          374 LIRRS  378 (456)
Q Consensus       374 ~I~~~  378 (456)
                      +|.+.
T Consensus       250 ~i~~~  254 (363)
T TIGR01027       250 LFHAQ  254 (363)
T ss_pred             EEeeC
Confidence            99874

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>PRK14556 pyrH uridylate kinase; Provisional

Probab=99.93  E-value=1.8e-24  Score=210.16  Aligned_cols=215  Identities=21%  Similarity=0.286  Sum_probs=164.0

Q ss_pred             cceEEEEeCccccCC-------HHHHHHHHHHHHcCCC--CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~~--~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      ...+|+|++|..+..       ++.++++++.|+...+  .+..||| ++|++-.-.                       
T Consensus        15 ~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVv-GGGni~Rg~-----------------------   70 (249)
T PRK14556         15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVV-GGGNILRGG-----------------------   70 (249)
T ss_pred             hCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEE-CCCHHHhCc-----------------------
Confidence            356899999999974       4789999999987543  3555666 455443310                       


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                              ...++                       ........|++..++.++|+.++..+|.+.|+++..+++-..  
T Consensus        71 --------~~~~~-----------------------~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~--  117 (249)
T PRK14556         71 --------RANFG-----------------------NKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGV--  117 (249)
T ss_pred             --------hhhcc-----------------------CCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeecccc--
Confidence                    00000                       012345679999999999999999999999999988877442  


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                         ..+  +++.  +++++.    +. ++.|.|+|+.|+.|..    .++      +|++|+++|..++|+.+++|||||
T Consensus       118 ---~~~--~e~~--~~~~~~----~~-l~~g~vvi~~gg~G~p----~~S------tD~lAallA~~l~Ad~Lii~TdVD  175 (249)
T PRK14556        118 ---DGL--LKVA--SAHEFN----QE-LAKGRVLIFAGGTGNP----FVT------TDTTASLRAVEIGADALLKATTVN  175 (249)
T ss_pred             ---CcC--CCCC--CHHHHH----HH-HhCCCEEEEECCCCCC----cCC------cHHHHHHHHHHcCCCEEEEEeCCC
Confidence               111  2222  333333    22 4678899989987743    234      899999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      ||||+||+++|+|+++++++|+|+.+.   +.+++++.+++++++++||++|.|+.+|+         ..||+|.
T Consensus       176 GVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~  247 (249)
T PRK14556        176 GVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT  247 (249)
T ss_pred             ccCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence            999999999999999999999998663   56899999999999999999999988774         4688875

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.93  E-value=6.3e-25  Score=242.99  Aligned_cols=237  Identities=19%  Similarity=0.259  Sum_probs=175.5

Q ss_pred             cceEEEEeCccccCCHH------HHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           80 QLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~~------~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      ..++|+|||||||.+.+      +|++++++|.+.  .+.++|+|+||+.++|+.++...+..                 
T Consensus        15 ~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~-----------------   77 (718)
T PLN02418         15 VKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLV-----------------   77 (718)
T ss_pred             CCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhh-----------------
Confidence            35799999999999988      999999999853  34568999999999999888754310                 


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                              +++..+             +.      .......+..+.++||.+++.+++.+|+++|+++     +++ ++
T Consensus        78 --------~~~~~~-------------~~------~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~-----~qi-ll  124 (718)
T PLN02418         78 --------NSSFAD-------------LQ------KPQMELDGKACAAVGQSELMALYDTLFSQLDVTA-----SQL-LV  124 (718)
T ss_pred             --------hccccc-------------CC------CCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCeE-----EEE-Ee
Confidence                    000000             00      0001112237899999999999999999999954     556 78


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccC---------CCChhHHHHHHHHcCCce
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---------GGSDLTATTIGKALGLQE  302 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgR---------GGSD~tAa~lA~~L~A~~  302 (456)
                      |+++|.+.+.    +.+..+.+. .+++.|.|||+.|       ++.+++..+         +++|++|+++|.+++|+.
T Consensus       125 T~~~~~~~~~----~~~~~~~l~-~ll~~g~iPVv~~-------nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~  192 (718)
T PLN02418        125 TDSDFRDPDF----RKQLSETVE-SLLDLRVIPIFNE-------NDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADL  192 (718)
T ss_pred             cHhHhcchhH----hHhHHHHHH-HHHHCCCEEEEcC-------CCCccccccccccccCeecCcHHHHHHHHHHcCCCE
Confidence            8888876543    233334443 3467889999965       344554422         269999999999999999


Q ss_pred             EEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHc------CCCcchHH--HHHHHHhCCCCEEEecCCCCC-----
Q 012808          303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF------GAQVLHPQ--SMRPAREGDIPVRVKNSYNPN-----  369 (456)
Q Consensus       303 l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~------Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~-----  369 (456)
                      ++|||||||||++||+ .|++++|++++..+.......      |...|.||  ++..+.++|++++|.|+..|+     
T Consensus       193 li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~  271 (718)
T PLN02418        193 LILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKV  271 (718)
T ss_pred             EEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHHH
Confidence            9999999999999998 599999999987654332222      45688884  888999999999999987664     


Q ss_pred             ----CCceEEeecc
Q 012808          370 ----APGTLIRRSR  379 (456)
Q Consensus       370 ----~~GT~I~~~~  379 (456)
                          ..||+|.+..
T Consensus       272 l~g~~~GT~i~~~~  285 (718)
T PLN02418        272 LRGERVGTLFHQDA  285 (718)
T ss_pred             hcCCCCceEecccc
Confidence                4799997643

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.92  E-value=6.2e-25  Score=215.70  Aligned_cols=223  Identities=22%  Similarity=0.293  Sum_probs=163.0

Q ss_pred             EEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808           83 CVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE  161 (456)
Q Consensus        83 ~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  161 (456)
                      .|+||||+++.+++.++++++.|.... ...++|||+++++.+|.|++.....                           
T Consensus         1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~---------------------------   53 (256)
T cd04238           1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIE---------------------------   53 (256)
T ss_pred             CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCC---------------------------
Confidence            489999999999999999999887432 1234667799999999988642210                           


Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHH---HHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC--
Q 012808          162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSR---DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--  236 (456)
Q Consensus       162 l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~---d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~--  236 (456)
                          ..           +.++++   ..++...   +..++ | ++|..| .++|+++|++++++++.+.++++++.+  
T Consensus        54 ----~~-----------~~~~~r---~t~~~~l~~~~~a~~-g-~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~  112 (256)
T cd04238          54 ----SE-----------FVNGLR---VTDKETMEIVEMVLA-G-KVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEE  112 (256)
T ss_pred             ----CE-----------eECCee---cCCHHHHHHHHHHHc-C-chHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCC
Confidence                00           001111   1122222   23333 6 888887 778999999999999999888988652  


Q ss_pred             -----CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          237 -----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       237 -----~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                           +. .++...+...+.+     +++.+.|||++| ++.+ .+|++++++   +|++|+.+|.+|+|++++|||||+
T Consensus       113 ~~~~~~~~g~i~~i~~~~l~~-----ll~~g~ipVv~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~  182 (256)
T cd04238         113 KDIDLGFVGEVTEVNPELLET-----LLEAGYIPVIAP-IAVD-EDGETYNVN---ADTAAGAIAAALKAEKLILLTDVP  182 (256)
T ss_pred             CCCCcccccceEEECHHHHHH-----HHHCCCEEEECC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence                 21 3444444444433     357789999998 5777 478888887   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCC-CEEEecCCCCC
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN  369 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~  369 (456)
                      |||++      +++++++++++|+.++...+  ...|.|+  ++..+.++++ +++|.|+..|+
T Consensus       183 Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~  240 (256)
T cd04238         183 GVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPH  240 (256)
T ss_pred             cccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence            99987      27899999999999998533  3567765  5556667676 59999987663

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.92  E-value=2.7e-24  Score=212.68  Aligned_cols=174  Identities=18%  Similarity=0.247  Sum_probs=138.3

Q ss_pred             CCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec----------------CCCC-cceeecchHHHH
Q 012808          189 LTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD----------------DFTN-ADILEATYPAVA  250 (456)
Q Consensus       189 ~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~----------------~~~~-a~i~~~~~~~i~  250 (456)
                      .+++..+.+ .++| ++|..+++ .|+++|++|+.+++.+.++++.+                +++. .++...+.+.+.
T Consensus        66 t~~~~l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~  143 (268)
T PRK14058         66 TDRETLEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLK  143 (268)
T ss_pred             CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHH
Confidence            356666664 6888 99999886 89999999999999998777643                1222 344444444443


Q ss_pred             HHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccC
Q 012808          251 KRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT  330 (456)
Q Consensus       251 ~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls  330 (456)
                      .     +++.+.|||++|+ +.+ .+|+.++++   +|++|+.+|.+|+|++++|||||+|||++||+   ++++|++++
T Consensus       144 ~-----ll~~g~iPVi~~~-~~~-~~g~~~~i~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~  210 (268)
T PRK14058        144 L-----LLKAGYLPVVAPP-ALS-EEGEPLNVD---GDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERIT  210 (268)
T ss_pred             H-----HHHCCCEEEEeCc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcC
Confidence            3     3577899999996 545 478888776   99999999999999999999999999999994   578999999


Q ss_pred             HHHHHHHHHcCCCcchHH--HHHHHHhCCC-CEEEecCCCCC-------CCceEEee
Q 012808          331 FDEAAELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN-------APGTLIRR  377 (456)
Q Consensus       331 ~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~-------~~GT~I~~  377 (456)
                      ++|+.++..+....|.||  ++..+.++|+ +++|.|+.+|+       ..||+|.+
T Consensus       211 ~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~  267 (268)
T PRK14058        211 PEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN  267 (268)
T ss_pred             HHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence            999999987777788886  6777888899 79999987775       35999864

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=99.92  E-value=1.4e-23  Score=199.41  Aligned_cols=214  Identities=24%  Similarity=0.360  Sum_probs=164.3

Q ss_pred             ceEEEEeCccccCC-------HHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808           81 LTCVMKFGGSSLAS-------AERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK  152 (456)
Q Consensus        81 ~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~  152 (456)
                      +.+|+|+||+.+..       ++.++++++.|++..+ +..|.||-++|++-......                      
T Consensus         6 ~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~----------------------   63 (238)
T COG0528           6 MRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGA----------------------   63 (238)
T ss_pred             EEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHH----------------------
Confidence            66999999999975       5899999999987643 33464555666655432221                      


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808          153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT  232 (456)
Q Consensus       153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit  232 (456)
                            +  .|.                         +....|++..++.++|+.+|...|++.|+++..+++..+..+ 
T Consensus        64 ------~--~g~-------------------------~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~-  109 (238)
T COG0528          64 ------A--AGM-------------------------DRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQV-  109 (238)
T ss_pred             ------H--cCC-------------------------chhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCccc-
Confidence                  1  021                         334569999999999999999999999999998887654211 


Q ss_pred             ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeec-CCc
Q 012808          233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG  311 (456)
Q Consensus       233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TD-V~G  311 (456)
                            +++  .++.+    ..++ ++.+.|+|..|-.|..   |.+       +|++|+++|..++||-++..|+ |||
T Consensus       110 ------~e~--~~~~~----A~~~-l~~grVvIf~gGtg~P---~fT-------TDt~AALrA~ei~ad~ll~atn~VDG  166 (238)
T COG0528         110 ------AEP--YSRRE----AIRH-LEKGRVVIFGGGTGNP---GFT-------TDTAAALRAEEIEADVLLKATNKVDG  166 (238)
T ss_pred             ------cCc--cCHHH----HHHH-HHcCCEEEEeCCCCCC---CCc-------hHHHHHHHHHHhCCcEEEEeccCCCc
Confidence                  111  12222    2222 5678999998844432   333       7999999999999999999995 999


Q ss_pred             cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      ||++||+++|+|+.+++|||+|+.++   +-++|+|.|+..+++++||++|.|.++|.         +.||.|.
T Consensus       167 VY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~  237 (238)
T COG0528         167 VYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE  237 (238)
T ss_pred             eeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence            99999999999999999999998887   47999999999999999999999977764         4566664

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=99.90  E-value=1.1e-22  Score=199.24  Aligned_cols=148  Identities=20%  Similarity=0.257  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808          203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL  282 (456)
Q Consensus       203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl  282 (456)
                      +++.. +.++|.++|+++.++++.++ +.+..    .++...+...+.+     +++.+.|||++|+.+.+ .+|.+.++
T Consensus        80 ~ln~~-~~~~l~~~g~~a~~l~~~~~-~~~~~----g~~~~~~~~~l~~-----ll~~g~iPVi~~~~~~~-~~~~~~~~  147 (252)
T cd04241          80 ELNSI-VVDALLEAGVPAVSVPPSSF-FVTEN----GRIVSFDLEVIKE-----LLDRGFVPVLHGDVVLD-EGGGITIL  147 (252)
T ss_pred             HHHHH-HHHHHHHCCCCeEEEChHHe-EEecC----CeeeeecHHHHHH-----HHhCCCEEEEcCCeEec-CCCCeEEe
Confidence            66665 56678999999999999886 33321    2333334333332     35789999999987766 46767777


Q ss_pred             cCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHc-------CCCcchHH--HHHHH
Q 012808          283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF-------GAQVLHPQ--SMRPA  353 (456)
Q Consensus       283 gRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~-------Ga~vlhp~--a~~~a  353 (456)
                      +   +|++|+.+|.+|+|+++++||||||||++||   |++++|++++++|+.++...       ....|.|+  ++..+
T Consensus       148 ~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a  221 (252)
T cd04241         148 S---GDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLEL  221 (252)
T ss_pred             C---hHHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHH
Confidence            6   9999999999999999999999999999999   89999999999988888652       23567776  67778


Q ss_pred             HhCCCCEEEecCCCC
Q 012808          354 REGDIPVRVKNSYNP  368 (456)
Q Consensus       354 ~~~~Ipv~I~n~~~p  368 (456)
                      .++|++++|.|+.+|
T Consensus       222 ~~~Gv~v~I~~g~~~  236 (252)
T cd04241         222 ARRGIEVYIFNGDKP  236 (252)
T ss_pred             HhcCCeEEEEeCCCH
Confidence            889999999998776

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>PLN02512 acetylglutamate kinase

Probab=99.89  E-value=1.2e-21  Score=197.62  Aligned_cols=236  Identities=20%  Similarity=0.291  Sum_probs=164.2

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .++|+||||+++.+++....+.+.|...  .+.++|+|+ ++|...+.+++                             
T Consensus        48 ~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVH-GgG~~i~~~~~-----------------------------   97 (309)
T PLN02512         48 KTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVH-GGGPEINSWLK-----------------------------   97 (309)
T ss_pred             CeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEE-CCcHHHHHHHH-----------------------------
Confidence            5699999999999877666666666532  233445555 45555554443                             


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT  237 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~  237 (456)
                        .+++++.           +.+|++.   .++.+.+.+ ..+.-.++..+. +.|+++|++++++++.+.++++.+.+.
T Consensus        98 --~~gi~~~-----------~~~G~rv---T~~~~lei~~~~l~g~ln~~lv-~~L~~~Gv~av~l~g~d~~~i~a~~~~  160 (309)
T PLN02512         98 --KVGIEPQ-----------FKNGLRV---TDAETMEVVEMVLVGKVNKSLV-SLINKAGGTAVGLSGKDGRLLRARPSP  160 (309)
T ss_pred             --HcCCCCc-----------CCCCCcC---CCHHHHHHHHHHHhhHHHHHHH-HHHHHcCCCeEEeehhhCCEEEEEEcC
Confidence              1122211           2233332   234444443 222226677765 579999999999999998888887553


Q ss_pred             C-------cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          238 N-------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       238 ~-------a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      +       .++...+...+.     .+++.+.|||++|+ +.+ .+|+..+++   +|++|+.+|.+|+|++++|||||+
T Consensus       161 ~~~~~~~~G~i~~v~~~~i~-----~lL~~g~IPVi~~~-~~d-~~g~~~~i~---~D~~A~~lA~~L~Ad~li~lTdV~  230 (309)
T PLN02512        161 NSADLGFVGEVTRVDPTVLR-----PLVDDGHIPVIATV-AAD-EDGQAYNIN---ADTAAGEIAAALGAEKLILLTDVA  230 (309)
T ss_pred             cCccccccceeeecCHHHHH-----HHHhCCCEEEEeCc-eEC-CCCCEeccC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence            2       234344443333     24578899999995 777 478888886   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI  375 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I  375 (456)
                      |||++||   +++++|++++++|+.++...|  ...|.||  ++..+.++|++ ++|.|+..|+          ..||+|
T Consensus       231 GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I  307 (309)
T PLN02512        231 GVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMI  307 (309)
T ss_pred             ceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEE
Confidence            9999864   358899999999999998544  4678886  55666788996 8999876653          357777


Q ss_pred             e
Q 012808          376 R  376 (456)
Q Consensus       376 ~  376 (456)
                      .
T Consensus       308 ~  308 (309)
T PLN02512        308 T  308 (309)
T ss_pred             e
Confidence            5

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.88  E-value=5.7e-22  Score=197.66  Aligned_cols=235  Identities=17%  Similarity=0.250  Sum_probs=166.4

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .+.|.|+||+.+.++...+.+++.|.... ...++|+|++.|..-+.+++                              
T Consensus        24 ~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~------------------------------   73 (284)
T CHL00202         24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLK------------------------------   73 (284)
T ss_pred             CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH------------------------------
Confidence            57999999999988666667777776532 22345555565654444433                              


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC--
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--  236 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~-s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~--  236 (456)
                       ++++++.           +.+|++.+   ++.+.+.+. .+.-.++..+.+ .|++.|++++++++.+.++++....  
T Consensus        74 -~~g~~~~-----------~~~G~rvT---~~~~l~~~~~~l~g~ln~~lv~-~L~~~Gv~av~l~~~d~~~i~a~~~~~  137 (284)
T CHL00202         74 -QLNISPK-----------FWNGIRVT---DKVTMEIVEMVLAGKVNKDLVG-SINANGGKAVGLCGKDANLIVARASDK  137 (284)
T ss_pred             -HCCCCCE-----------eECCcccC---CHHHHHHHHHHHhhHHHHHHHH-HHHhCCCCeeeeeeccCCEEEEEeCCC
Confidence             1222221           23455433   445555442 233367888654 5899999999999999888876532  


Q ss_pred             ---CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          237 ---TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       237 ---~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                         +. .++...+...+..     +++.+.|||++|+ +.+ ..|++++++   +|++|+.+|.+|+|++++|||||+||
T Consensus       138 ~d~~~~G~i~~v~~~~i~~-----ll~~g~iPVi~~~-~~~-~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv  207 (284)
T CHL00202        138 KDLGLVGEIQQVDPQLIDM-----LLEKNYIPVIASV-AAD-HDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGI  207 (284)
T ss_pred             cccccceeEEecCHHHHHH-----HHHCCCEEEECCC-ccC-CCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhh
Confidence               22 2444444443433     3577899999994 777 478888888   99999999999999999999999999


Q ss_pred             ccC--CCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808          313 LTC--DPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI  375 (456)
Q Consensus       313 ~ta--DP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I  375 (456)
                      |+.  ||     .+++++++++|+.++...|  ...|.||  ++..+.++|++ ++|.++.+|+          ..||+|
T Consensus       208 ~~~~~d~-----~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i  282 (284)
T CHL00202        208 LADINDP-----NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSML  282 (284)
T ss_pred             cCCCCCC-----CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEE
Confidence            984  34     3799999999999998765  3578886  66777888987 7899887764          358877


Q ss_pred             e
Q 012808          376 R  376 (456)
Q Consensus       376 ~  376 (456)
                      .
T Consensus       283 ~  283 (284)
T CHL00202        283 V  283 (284)
T ss_pred             e
Confidence            4

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.87  E-value=2.2e-21  Score=189.29  Aligned_cols=228  Identities=23%  Similarity=0.333  Sum_probs=173.9

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .+.|.|+||+.+.+.+.+..+++.|.-.  .+.++|||+ +.|...|++++                             
T Consensus         3 k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVH-Gggp~I~~~l~-----------------------------   52 (265)
T COG0548           3 KTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVH-GGGPQIDEMLA-----------------------------   52 (265)
T ss_pred             ceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEe-CCchHHHHHHH-----------------------------
Confidence            5799999999999999899999987643  345775555 55555554443                             


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC--
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD--  235 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~--  235 (456)
                        .+++++.           |.+|+|++   ++.+.+.+ +.++-.+|..|.+ .|+..|.+++.+++.+.++++...  
T Consensus        53 --~~gie~~-----------f~~glRvT---d~~tlevv~mvl~G~vNk~iva-~l~~~g~~avGlsg~Dg~li~A~~~~  115 (265)
T COG0548          53 --KLGIEPE-----------FVKGLRVT---DAETLEVVEMVLGGTVNKEIVA-RLSKHGGQAVGLSGVDGNLVTAKKLD  115 (265)
T ss_pred             --HcCCCCe-----------eeCCEEcC---CHHHHHHHHHHHHHHHHHHHHH-HHHHhCCcceeeeecCCCEEEEEEcc
Confidence              2333332           55666554   44555554 4556678888765 589999999999999988888753  


Q ss_pred             ------CCCc-ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeec
Q 012808          236 ------FTNA-DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD  308 (456)
Q Consensus       236 ------~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TD  308 (456)
                            ++.. ++..++..-     ...+++++.|||+++ +|.+ .+|++.+++   +|+.|+.+|.+|+|++++++||
T Consensus       116 ~~~~id~g~vG~i~~Vn~~~-----i~~ll~~~~IpViap-ia~~-~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltd  185 (265)
T COG0548         116 VDDGVDLGYVGEIRKVNPEL-----IERLLDNGAIPVIAP-IAVD-EDGETLNVN---ADTAAGALAAALKAEKLILLTD  185 (265)
T ss_pred             cccccccceeeeEEEECHHH-----HHHHHhCCCceEEec-ceEC-CCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeC
Confidence                  3332 444455433     333467899999998 7888 589999999   9999999999999999999999


Q ss_pred             CCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCC-CEEEecCCCCC
Q 012808          309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN  369 (456)
Q Consensus       309 V~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~  369 (456)
                      |+||++.+|+.    ..+++++.+|+.+|...|  ...|.|+  ++..|.+.|+ +++|.|+..|.
T Consensus       186 v~Gvl~~~~~~----s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~  247 (265)
T COG0548         186 VPGVLDDKGDP----SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPH  247 (265)
T ss_pred             CcccccCCCCc----eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcc
Confidence            99999987642    689999999999999987  4678886  7788899999 59999987764

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=99.87  E-value=1.2e-20  Score=185.89  Aligned_cols=212  Identities=20%  Similarity=0.275  Sum_probs=146.6

Q ss_pred             ceEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s--~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .++|+|+|||.+.+  .+.++++++.|++..+...+++|++.|.....                            |...
T Consensus        31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~r~----------------------------~~~~   82 (262)
T cd04255          31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRPEHKLLILTGGGTRARH----------------------------VYSI   82 (262)
T ss_pred             CcEEEEeccceecCCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH----------------------------HHHH
Confidence            35899999999964  57899999999876544455555544432210                            1111


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                      +..++.                         +....|++......+|+.++...|...|+++..          ..    
T Consensus        83 ~~~~g~-------------------------~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i~----------~~----  123 (262)
T cd04255          83 GLDLGM-------------------------PTGVLAKLGASVSEQNAEMLATLLAKHGGSKVG----------HG----  123 (262)
T ss_pred             HHHcCC-------------------------CchHHHHHHHHHHHHHHHHHHHHHHHcCCCccc----------cc----
Confidence            112222                         222344555555678888887888888886521          11    


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCC------ChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG------SDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGG------SD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                            +...+.+     +++.+.|||++|+.+.+    ..++++|+|      +|++|+++|.+|+|+.+++|||||||
T Consensus       124 ------~~~~l~~-----lL~~g~vPVi~g~~~~~----~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGV  188 (262)
T cd04255         124 ------DLLQLPT-----FLKAGRAPVISGMPPYG----LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGL  188 (262)
T ss_pred             ------cHHHHHH-----HHHCCCeEEEeCCcCCC----eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCee
Confidence                  1122222     35788999999987643    345566666      99999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCC--CCEEEecCCCCC---------CCceEE
Q 012808          313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGD--IPVRVKNSYNPN---------APGTLI  375 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~--Ipv~I~n~~~p~---------~~GT~I  375 (456)
                      |++||+.+|+|++|++++++|+.++.. +..+|...+...++.++  +|++|.|+.+|+         ..||+|
T Consensus       189 y~~dP~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i  261 (262)
T cd04255         189 YTADPKKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII  261 (262)
T ss_pred             ECCCCCCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEe
Confidence            999999999999999999999888752 23346666555555333  699999987774         357776

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.86  E-value=2.2e-20  Score=183.69  Aligned_cols=221  Identities=20%  Similarity=0.288  Sum_probs=158.7

Q ss_pred             EEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHHh
Q 012808           83 CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL  162 (456)
Q Consensus        83 ~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l  162 (456)
                      .|+||||+.+.+.   +++++.|+.. +. ++|+|+++|...+.+++.                               +
T Consensus         1 ~VIKlGGs~l~~~---~~~~~~i~~l-g~-~~VlVHGgg~~i~~~~~~-------------------------------~   44 (257)
T cd04251           1 IVVKIGGSVVSDL---DKVIDDIANF-GE-RLIVVHGGGNYVNEYLKR-------------------------------L   44 (257)
T ss_pred             CEEEEChHHhhCh---HHHHHHHHHc-CC-CEEEECCCHHHHHHHHHH-------------------------------c
Confidence            4899999999864   5677777765 33 477888888766665541                               1


Q ss_pred             CCCHHHHHHHHHHHHHHH---HHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC---
Q 012808          163 GIDRSIIATHLEELEQLL---KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF---  236 (456)
Q Consensus       163 ~~~~~~i~~~~~~L~~ll---~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~---  236 (456)
                      +++..           +.   +|+. .+-.+++..+.+..-.+.+|..+++ .|+++|++++++++.+.++++.+..   
T Consensus        45 gi~~~-----------~~~~~~G~~-~Rvt~~~~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~  111 (257)
T cd04251          45 GVEPK-----------FVTSPSGIR-SRYTDKETLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIV  111 (257)
T ss_pred             CCCcE-----------EEeCCCCCc-cccCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCCEEEEEEeecc
Confidence            22111           11   1210 0123456666664444899999776 8999999999999999877765432   


Q ss_pred             -------------CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCce
Q 012808          237 -------------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE  302 (456)
Q Consensus       237 -------------~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~  302 (456)
                                   +. .++...+.+.+..     +++.+.|||+++|. .+ .+|++++++   +|++|+.+|.+|+|++
T Consensus       112 ~~~~~~~~~~~d~~~~G~v~~v~~~~i~~-----ll~~g~vpVi~~~~-~~-~~G~~~~i~---~D~~A~~lA~~L~A~~  181 (257)
T cd04251         112 RVNERGRKMIIRGGYTGKVEKVNSDLIEA-----LLDAGYLPVVSPVA-YS-EEGEPLNVD---GDRAAAAIAAALKAER  181 (257)
T ss_pred             cccccCcccccCCcceEEEEEEcHHHHHH-----HHhCCCeEEEeCcE-EC-CCCcEEecC---HHHHHHHHHHHcCCCE
Confidence                         11 2343334443332     35788999999864 44 478888887   9999999999999999


Q ss_pred             EEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHH--HHHHHHhCCC-CEEEecCCCCC
Q 012808          303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN  369 (456)
Q Consensus       303 l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~  369 (456)
                      ++|||||+|||++       ++++++++++|+.++...-...|.|+  ++..+.++++ .++|.++..|+
T Consensus       182 li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~  244 (257)
T cd04251         182 LILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS  244 (257)
T ss_pred             EEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence            9999999999973       78999999999999986555677775  7777888888 58898887765

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=99.85  E-value=4.4e-20  Score=183.91  Aligned_cols=170  Identities=16%  Similarity=0.227  Sum_probs=128.9

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcC
Q 012808          193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGK  272 (456)
Q Consensus       193 ~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~  272 (456)
                      .+..+.++|+..-..++...|..+|+++     .|+ ++|.++|.+.+.    +.+..+.+. .+++.|.|||++|+-..
T Consensus        93 ~~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~-llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVi~~nD~v  161 (284)
T cd04256          93 DGRACAAVGQSGLMALYEAMFTQYGITV-----AQV-LVTKPDFYDEQT----RRNLNGTLE-ELLRLNIIPIINTNDAV  161 (284)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHcCCcH-----HHe-eeeccccccHHH----HHHHHHHHH-HHHHCCCEEEEeCCCcc
Confidence            3566788999999999999999999875     566 888888887643    233344333 35788999999863221


Q ss_pred             CC-----CCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHH-----cCC
Q 012808          273 AW-----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGA  342 (456)
Q Consensus       273 ~~-----~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~-----~Ga  342 (456)
                      ..     ++|+.. ...+++|+.|+.+|..++|+.++++|||||||++||+ .|++++|++++..|..+++.     .|.
T Consensus       162 ~~~~~~~~~~~~~-~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gt  239 (284)
T cd04256         162 SPPPEPDEDLQGV-ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGT  239 (284)
T ss_pred             ccccccccccccc-ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCccc
Confidence            10     011110 1125799999999999999999999999999999997 69999999999988766643     245


Q ss_pred             CcchHH--HHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808          343 QVLHPQ--SMRPAREGDIPVRVKNSYNPN---------APGTLI  375 (456)
Q Consensus       343 ~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I  375 (456)
                      ..|.||  ++..+.++|++++|.|+..|+         ..||+|
T Consensus       240 GGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~  283 (284)
T cd04256         240 GGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF  283 (284)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence            789885  888899999999999987764         467776

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.84  E-value=4e-20  Score=205.11  Aligned_cols=236  Identities=17%  Similarity=0.282  Sum_probs=164.0

Q ss_pred             cceEEEEeCccccCCHH------HHHHHHHHHHcC--CCCCcEEEEc---CCCcCchHHHHhhHHHHhcCCCccchHHHH
Q 012808           80 QLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLS---AMGKTTNKLLLAGEKAVSCGVTNISCIDEL  148 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~~------~~~~va~iI~~~--~~~~~vvVVS---A~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l  148 (456)
                      ...+|+|||||++.+.+      .+.++++.|...  .+.+.|+|+|   |+|..+..+.+....               
T Consensus         7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~---------------   71 (715)
T TIGR01092         7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNS---------------   71 (715)
T ss_pred             CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccc---------------
Confidence            36799999999998764      899999998853  2345677788   566555443321100               


Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccce
Q 012808          149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI  228 (456)
Q Consensus       149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~  228 (456)
                                    +..                  ...+..+...+..+.+.|+..-..+....+...++.+     .++
T Consensus        72 --------------~~~------------------~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~i~~-----aQ~  114 (715)
T TIGR01092        72 --------------SFA------------------DLQKPQPELDGKACAAVGQSGLMALYETMFTQLDITA-----AQI  114 (715)
T ss_pred             --------------ccc------------------ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----EEE
Confidence                          000                  0000112223344556676666666777777777765     556


Q ss_pred             eEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCC---------ChhHHHHHHHHcC
Q 012808          229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG---------SDLTATTIGKALG  299 (456)
Q Consensus       229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGG---------SD~tAa~lA~~L~  299 (456)
                       ++|.++|.+.+.    +.+..+.+. .+++.|.|||+.+       ||.+++.++++         +|++|+++|.+|+
T Consensus       115 -Llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVin~-------nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~  181 (715)
T TIGR01092       115 -LVTDLDFRDEQF----RRQLNETVH-ELLRMNVVPVVNE-------NDAVSTRAAPYSDSQGIFWDNDSLAALLALELK  181 (715)
T ss_pred             -EechhhcccHHH----HHHHHHHHH-HHHHCCCEEEEcC-------CCcccccccccccccceecchHHHHHHHHHHcC
Confidence             888888776543    233333333 3568899999965       45667777654         6999999999999


Q ss_pred             CceEEEeecCCccccCCCCCCCCCccccccCHHHHH-HHHH-----cCCCcchH--HHHHHHHhCCCCEEEecCCCCC--
Q 012808          300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA-ELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN--  369 (456)
Q Consensus       300 A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~-eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~--  369 (456)
                      |+.++++|||||||++||+ .|++++|++++..+.. +++.     .+...|.|  +++..+.++|++++|.|+.+|+  
T Consensus       182 Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l  260 (715)
T TIGR01092       182 ADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNI  260 (715)
T ss_pred             CCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchH
Confidence            9999999999999999996 6999999999876554 3322     23567887  5888999999999999987763  


Q ss_pred             -------CCceEEeeccCC
Q 012808          370 -------APGTLIRRSRDM  381 (456)
Q Consensus       370 -------~~GT~I~~~~~~  381 (456)
                             ..||+|.+...|
T Consensus       261 ~~~l~g~~~GT~~~~~~~~  279 (715)
T TIGR01092       261 TKVVEGKKVGTLFHEDAHL  279 (715)
T ss_pred             HHHhcCCCCceEecccchh
Confidence                   469999765443

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>PTZ00489 glutamate 5-kinase; Provisional

Probab=99.82  E-value=1.1e-18  Score=171.92  Aligned_cols=169  Identities=18%  Similarity=0.230  Sum_probs=123.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCC
Q 012808          194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA  273 (456)
Q Consensus       194 ~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~  273 (456)
                      +..+.+.|+..-..++...|.++|+++..     + ++|..++.+..    .+.+..+.+. .+++.+.|||+.|.-.. 
T Consensus        72 ~qa~aaiGq~~L~~~y~~~f~~~~~~~aq-----i-Llt~~d~~~~~----~~~n~~~~l~-~lL~~g~VPIinend~~-  139 (264)
T PTZ00489         72 KQALASMGQPLLMHMYYTELQKHGILCAQ-----M-LLAAYDLDSRK----RTINAHNTIE-VLISHKVIPIINENDAT-  139 (264)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhCCCeEEE-----e-eeeccccccch----hhHHHHHHHH-HHHHCCCEEEECCCCCc-
Confidence            45566778877777888999999998743     3 45555554321    2223333343 35688999999872111 


Q ss_pred             CCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCcc---ccccCHHHHHHHH----HcCCCcch
Q 012808          274 WRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP---VPYLTFDEAAELA----YFGAQVLH  346 (456)
Q Consensus       274 ~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~---i~~ls~~Ea~eLa----~~Ga~vlh  346 (456)
                       ..++.   -.|++|..|+++|..++|+.++|+|||||||++||+.+|+|++   ++++++++.....    ..|...|.
T Consensus       140 -~~~e~---~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~  215 (264)
T PTZ00489        140 -ALHEL---VFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIV  215 (264)
T ss_pred             -cccee---EeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChH
Confidence             01122   2457999999999999999999999999999999999999998   7889988764432    23456777


Q ss_pred             HH--HHHHHHhCCCCEEEecCCCCC-----------CCceEEeec
Q 012808          347 PQ--SMRPAREGDIPVRVKNSYNPN-----------APGTLIRRS  378 (456)
Q Consensus       347 p~--a~~~a~~~~Ipv~I~n~~~p~-----------~~GT~I~~~  378 (456)
                      +|  ++..+.++|++++|.|+.+|+           ..||+|.+.
T Consensus       216 ~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~  260 (264)
T PTZ00489        216 TKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR  260 (264)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence            65  889999999999999987663           268888653

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=99.82  E-value=1.2e-18  Score=173.93  Aligned_cols=229  Identities=21%  Similarity=0.404  Sum_probs=172.3

Q ss_pred             cceEEEEeCccccCCH------HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808           80 QLTCVMKFGGSSLASA------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK  152 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~------~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~  152 (456)
                      .+.+|.|+|-|++.++      +.+..+++.|.+.. ..+.||+||.+. +.     +       +.             
T Consensus         6 ~~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-ia-----a-------G~-------------   59 (369)
T COG0263           6 ARRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGA-IA-----A-------GR-------------   59 (369)
T ss_pred             ceEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccch-hh-----h-------Ch-------------
Confidence            3679999999998763      56777777776543 345577776322 11     0       10             


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808          153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT  232 (456)
Q Consensus       153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit  232 (456)
                             ..|+.+.                    +...-..++.+.+.|+..-.......|..+|++.-     |+ ++|
T Consensus        60 -------~~Lg~~~--------------------rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v~-----Qi-LLT  106 (369)
T COG0263          60 -------TRLGLPK--------------------RPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKVG-----QI-LLT  106 (369)
T ss_pred             -------hhcCCCC--------------------CCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCeee-----EE-Eee
Confidence                   1233221                    11223456778899999999999999999999863     55 778


Q ss_pred             ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceee--ccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vtt--lgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      .+++.+-+    .|.+.+..+.. |++.|.||||      | +|+.+.+  +-.|++|..++++|...+||.++++||+|
T Consensus       107 r~D~~~r~----ry~Nar~Tl~~-Ll~~gvVPII------N-ENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiD  174 (369)
T COG0263         107 RDDFSDRR----RYLNARNTLSA-LLELGVVPII------N-ENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDID  174 (369)
T ss_pred             hhhhhhHH----HHHHHHHHHHH-HHHCCceeee------c-CCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccC
Confidence            77766542    45666666654 5788999999      5 3666655  67899999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchHH--HHHHHHhCCCCEEEecCCCCC---------CCc
Q 012808          311 GVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---------APG  372 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~G  372 (456)
                      |+||+||+.+|+|++|+++.-  .|...++.     +|...|..|  |.+.|.++|+|+.|.|+.+|+         ..|
T Consensus       175 GLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~G  254 (369)
T COG0263         175 GLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVG  254 (369)
T ss_pred             cccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCc
Confidence            999999999999999999873  46666664     466688765  899999999999999999875         579


Q ss_pred             eEEeecc
Q 012808          373 TLIRRSR  379 (456)
Q Consensus       373 T~I~~~~  379 (456)
                      |++.+..
T Consensus       255 T~F~~~~  261 (369)
T COG0263         255 TLFEPQA  261 (369)
T ss_pred             cEEecCC
Confidence            9998653

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.74  E-value=1.4e-16  Score=167.58  Aligned_cols=234  Identities=15%  Similarity=0.159  Sum_probs=158.2

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .+.|+|+||+.+.++ .+..+++.|..... ..++|+|++.|..-+++++                              
T Consensus        18 ~~~ViK~GG~~~~~~-~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~------------------------------   66 (429)
T TIGR01890        18 KTFVVGLGGELVEGG-NLGNIVADIALLHSLGVRLVLVHGARPQIERILA------------------------------   66 (429)
T ss_pred             CEEEEEEChhhccCc-cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHH------------------------------
Confidence            579999999999875 34677777765432 2345666666655544443                              


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEE-----ecccceeEEeec
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQ-----YDAFDIGFITTD  234 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~-----ld~~~~~iit~~  234 (456)
                       .++++++           +.+|++++   ++.+.+.+......+|..|.+. |++. +++..     +.+.+.++++..
T Consensus        67 -~~g~~~~-----------~~~G~RvT---~~~~l~~~~~~~g~vn~~l~~~-l~~~-~~~~~~~~~~l~~~dg~~~~a~  129 (429)
T TIGR01890        67 -ARGRTPH-----------YHRGLRVT---DEASLEQAQQAAGTLRLAIEAR-LSMS-LSNTPMAGSRLPVVSGNFVTAR  129 (429)
T ss_pred             -HcCCCce-----------eeCCcccC---CHHHHHHHHHHhChHHHHHHHH-HHhc-CCcccccccCceEccceEEEEE
Confidence             2333332           45676654   4455555433333668776654 6555 44333     455555566533


Q ss_pred             --------CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808          235 --------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV  305 (456)
Q Consensus       235 --------~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i  305 (456)
                              +++. .++...+.+.+..     +++.+.+||+++ +|.+ .+|+..+++   +|..|+.||.+|+|+++++
T Consensus       130 ~~~~~~~~~~g~~G~v~~v~~~~l~~-----ll~~g~ipvi~p-i~~~-~~g~~~nvn---aD~~A~~lA~al~a~kli~  199 (429)
T TIGR01890       130 PIGVIEGVDYEHTGVIRKIDTEGIRR-----QLDAGSIVLLSP-LGHS-PTGETFNLD---MEDVATSVAISLKADKLIY  199 (429)
T ss_pred             ECCCCcCccccccceEEEEcHHHHHH-----HHHCCCeEEECC-cccC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEE
Confidence                    2333 2555555544443     357789999988 7777 489999999   9999999999999999999


Q ss_pred             eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCc-chHH--HHHHHHhCCC-CEEEecCCCCC----------CC
Q 012808          306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQV-LHPQ--SMRPAREGDI-PVRVKNSYNPN----------AP  371 (456)
Q Consensus       306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~v-lhp~--a~~~a~~~~I-pv~I~n~~~p~----------~~  371 (456)
                      +|||+|||+.      +.++|++|+.+|+.++....... +.|+  ++..|.+.|+ +++|.++..|+          ..
T Consensus       200 ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~  273 (429)
T TIGR01890       200 FTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGI  273 (429)
T ss_pred             EeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCC
Confidence            9999999963      36789999999999887543233 3676  6667788896 69999986553          47


Q ss_pred             ceEEeec
Q 012808          372 GTLIRRS  378 (456)
Q Consensus       372 GT~I~~~  378 (456)
                      ||.|..+
T Consensus       274 GT~i~~d  280 (429)
T TIGR01890       274 GTSISKE  280 (429)
T ss_pred             cceEecc
Confidence            9999874

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.70  E-value=8.1e-16  Score=150.66  Aligned_cols=212  Identities=18%  Similarity=0.278  Sum_probs=143.2

Q ss_pred             EEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 012808           84 VMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE  161 (456)
Q Consensus        84 V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~  161 (456)
                      |.|+||+.+.+.  +.++++.|....  +.++ |+|++.|..-+.+++                               +
T Consensus         2 ViKiGG~~~~~~--l~~~~~di~~l~~~g~~~-VlVHGgg~~i~~~~~-------------------------------~   47 (248)
T cd04252           2 VIKVGGAIIEDD--LDELAASLSFLQHVGLYP-IVVHGAGPQLNEELE-------------------------------A   47 (248)
T ss_pred             EEEEChhhhhcc--HHHHHHHHHHHHHCCCcE-EEEeCCCHHHHHHHH-------------------------------H
Confidence            899999999874  677777776542  3355 555555554444433                               2


Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee-----cC
Q 012808          162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT-----DD  235 (456)
Q Consensus       162 l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~-----~~  235 (456)
                      ++++..           +.+|++++   ++...+.+ .+++ .+|..+++. |+++|++++.+.+.   +++.     .+
T Consensus        48 ~gi~~~-----------~~~g~RvT---~~~~l~~v~~al~-~vn~~iv~~-l~~~g~~a~~l~~~---~~~a~~~~~~d  108 (248)
T cd04252          48 AGVEPE-----------YVDGLRVT---DPETLAVARKVFL-EENLKLVEA-LERNGARARPITSG---VFEAEYLDKDK  108 (248)
T ss_pred             cCCCcE-----------eeCCcccC---CHHHHHHHHHHHH-HHHHHHHHH-HHhCCCCcccccCc---eEEEEECcCcc
Confidence            233322           33444433   34444444 4556 778887765 89999999999874   2332     23


Q ss_pred             CCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808          236 FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT  314 (456)
Q Consensus       236 ~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t  314 (456)
                      |+. .++...+.+.++.     +++.+.|||++| +|.+ .+|++.+++   +|..|+.+|.+|+|++++|+|||+|||+
T Consensus       109 ~g~~G~v~~i~~~~i~~-----~L~~g~IPVi~p-~~~~-~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~  178 (248)
T cd04252         109 YGLVGKITGVNKAPIEA-----AIRAGYLPILTS-LAET-PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLD  178 (248)
T ss_pred             CCccCceeeECHHHHHH-----HHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCC
Confidence            433 2454455544443     357899999998 6776 478888998   9999999999999999999999999996


Q ss_pred             CCCCCCCCCccccccCH-HHHHHHHHcCC--CcchHH--HHHHHHhC--C-CCEEEec
Q 012808          315 CDPNIHPHAKPVPYLTF-DEAAELAYFGA--QVLHPQ--SMRPAREG--D-IPVRVKN  364 (456)
Q Consensus       315 aDP~~v~~Ak~i~~ls~-~Ea~eLa~~Ga--~vlhp~--a~~~a~~~--~-Ipv~I~n  364 (456)
                      .      +.+++++++. +++.++...|.  ..|.||  ++..+.+.  + ..++|.+
T Consensus       179 ~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~  230 (248)
T cd04252         179 G------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS  230 (248)
T ss_pred             C------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC
Confidence            4      3578999997 57777876552  467776  44455555  3 4577765

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.70  E-value=7.7e-16  Score=153.38  Aligned_cols=224  Identities=19%  Similarity=0.249  Sum_probs=145.9

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .+.|+|+||+.+.++ .++++++.|..... ..++|+|++.|..-+++++                              
T Consensus        19 ~~~VIKlGG~ai~~~-~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~------------------------------   67 (280)
T cd04237          19 KTFVIAFGGEAVAHP-NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLA------------------------------   67 (280)
T ss_pred             CEEEEEEChHHhcCc-hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHH------------------------------
Confidence            579999999999774 45666666665432 2334455555554443332                              


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEeccc-----ceeEEee
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAF-----DIGFITT  233 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~-----~~~iit~  233 (456)
                       .+++++           ++.+|++.+   ++...+.+ .++|+. +..| .+.|+. |++++.+.+.     +..++..
T Consensus        68 -~~gi~~-----------~~~~G~RvT---~~~~l~~~~~~~g~v-~~~l-~~~l~~-~~~a~~~~~~~~~~~~~~~v~~  129 (280)
T cd04237          68 -ERGLEP-----------RYHRGLRIT---DAAALECVKEAAGAV-RLEI-EALLSM-GLPNSPMAGARIRVVSGNFVTA  129 (280)
T ss_pred             -HcCCCc-----------cccCCcCcC---CHHHHHHHHHHHHHH-HHHH-HHHHHh-hccccCcCCCceEEecCeEEEE
Confidence             122222           133454433   34444444 344544 6665 445655 8887654332     2222333


Q ss_pred             cC--------CCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEE
Q 012808          234 DD--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ  304 (456)
Q Consensus       234 ~~--------~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~  304 (456)
                      ..        ++. .++...+.+.+.     .+++.+.+||+++ +|.+ .+|+..+++   +|..|+.||.+|+|++++
T Consensus       130 ~~~~~~~~~~~g~~G~v~~v~~~~i~-----~lL~~g~ipv~~~-~g~~-~~g~~lnvn---aD~~A~~LA~~L~a~klv  199 (280)
T cd04237         130 RPLGVVDGVDFGHTGEVRRIDADAIR-----RQLDQGSIVLLSP-LGYS-PTGEVFNLS---MEDVATAVAIALKADKLI  199 (280)
T ss_pred             EECCcccCceEeeeccEEEEcHHHHH-----HHHHCCCEEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHHcCCCEEE
Confidence            21        111 233333443333     3457788999987 6666 478998888   899999999999999999


Q ss_pred             EeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCC---CcchHH--HHHHHHhCCC-CEEEecCCCCC
Q 012808          305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA---QVLHPQ--SMRPAREGDI-PVRVKNSYNPN  369 (456)
Q Consensus       305 i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga---~vlhp~--a~~~a~~~~I-pv~I~n~~~p~  369 (456)
                      |+|||||||+.      +.+++++++.+|+.++...|.   ..|.||  ++..+.++++ +++|.+...|+
T Consensus       200 ~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~  264 (280)
T cd04237         200 FLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDG  264 (280)
T ss_pred             EEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            99999999973      368899999999999987764   578887  6667778899 69999987663

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.69  E-value=3.5e-16  Score=165.16  Aligned_cols=233  Identities=19%  Similarity=0.243  Sum_probs=153.6

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .++|+|+||+.+.+++ ++++++.|..... ..++|+|++.|..-+++++                              
T Consensus        26 ~~~VIk~GG~~l~~~~-~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~------------------------------   74 (441)
T PRK05279         26 KTFVIMLGGEAIAHGN-FSNIVHDIALLHSLGIRLVLVHGARPQIEEQLA------------------------------   74 (441)
T ss_pred             CEEEEEECchhccChh-HHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH------------------------------
Confidence            5799999999998753 5677777665432 2345555555554444432                              


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEeccccee-----EEee
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIG-----FITT  233 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~-----iit~  233 (456)
                       .+++++           ++.+|++++   ++.+.+.+ .++| .++..|. +.|+ .|++++.+.+..+.     ++..
T Consensus        75 -~~g~~~-----------~~~~G~RvT---~~~~l~~~~~~~g-~v~~~l~-~~l~-~g~~a~~~~~~~~~~~~~~~~~~  136 (441)
T PRK05279         75 -ARGIEP-----------RYHKGLRVT---DAAALECVKQAAG-ELRLDIE-ARLS-MGLPNTPMAGAHIRVVSGNFVTA  136 (441)
T ss_pred             -HcCCCc-----------eecCCcccC---CHHHHHHHHHHHH-HHHHHHH-HHHh-ccCCCCcccCCcceEeeccEEEE
Confidence             122222           134565544   34444443 3346 6777764 4565 49988776544321     2221


Q ss_pred             c--------CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEE
Q 012808          234 D--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ  304 (456)
Q Consensus       234 ~--------~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~  304 (456)
                      .        +++. .++...+.+.+.     .+++.|.|||+++ ++.+ .+|++.+++   +|..|+.||.+|+|++++
T Consensus       137 ~~~~~~~~~~~g~~G~v~~v~~~~i~-----~ll~~g~ipV~~~-i~~~-~~g~~~ni~---~D~~a~~lA~~l~a~~lv  206 (441)
T PRK05279        137 RPLGVDDGVDYQHTGEVRRIDAEAIR-----RQLDSGAIVLLSP-LGYS-PTGESFNLT---MEEVATQVAIALKADKLI  206 (441)
T ss_pred             EECCCCCCccccceeeEEEEeHHHHH-----HHHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence            1        2222 233333333333     3467889999965 6766 478888888   999999999999999999


Q ss_pred             EeecCCccccCCCCCCCCCccccccCHHHHHHHHH---cC--CCcchHH--HHHHHHhCCC-CEEEecCCCCC-------
Q 012808          305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY---FG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN-------  369 (456)
Q Consensus       305 i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~---~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~-------  369 (456)
                      |+|||+|||+.      ++++|++++.+|+.++..   .|  ...|-||  ++..+.++++ +++|.++..|+       
T Consensus       207 ~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~  280 (441)
T PRK05279        207 FFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELF  280 (441)
T ss_pred             EEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHh
Confidence            99999999953      478999999999998876   33  3578886  5556677899 69999876653       


Q ss_pred             ---CCceEEeec
Q 012808          370 ---APGTLIRRS  378 (456)
Q Consensus       370 ---~~GT~I~~~  378 (456)
                         ..||.|..+
T Consensus       281 ~~~g~GT~i~~~  292 (441)
T PRK05279        281 TRDGIGTMIVME  292 (441)
T ss_pred             cCCCCceEEecC
Confidence               479999875

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.69  E-value=1.2e-15  Score=150.67  Aligned_cols=207  Identities=11%  Similarity=0.091  Sum_probs=149.2

Q ss_pred             CCcceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHH
Q 012808           78 EKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH  155 (456)
Q Consensus        78 ~~~~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~  155 (456)
                      ..+.+.|+|+||+.+.+++.+..++..|.-..  +.++|+|+.++..++..|.   .                       
T Consensus        33 ~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~---~-----------------------   86 (271)
T cd04236          33 DWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS---D-----------------------   86 (271)
T ss_pred             CCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc---C-----------------------
Confidence            45688999999999999999999998887543  4577777765443333221   0                       


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec-
Q 012808          156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-  234 (456)
Q Consensus       156 ~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~-  234 (456)
                              .                         .......++  . ..|..|. ..|++.|++++++.+.. ++++.. 
T Consensus        87 --------~-------------------------~~~~~~~v~--~-~~n~~Lv-~~L~~~G~~A~gl~g~~-~~i~a~~  128 (271)
T cd04236          87 --------L-------------------------ELQAARSRL--V-KDCKTLV-EALQANSAAAHPLFSGE-SVLQAEE  128 (271)
T ss_pred             --------C-------------------------cchheehhH--H-HHHHHHH-HHHHhCCCCeeeecCcc-ceEEEEE
Confidence                    0                         000011111  1 3455544 56889999999998874 466543 


Q ss_pred             --CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808          235 --DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG  311 (456)
Q Consensus       235 --~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G  311 (456)
                        +++. .++..++.+.++.     +++.|.|||+++ +|.+ .+|++.+++   +|..|+.+|.+|+|++++++||++|
T Consensus       129 ~~d~g~vG~V~~Vd~~~I~~-----lL~~g~IPVisp-lg~~-~~G~~~NiN---aD~~A~~lA~aL~A~KLIfltd~~G  198 (271)
T cd04236         129 PEPGASKGPSVSVDTELLQW-----CLGSGHIPLVCP-IGET-SSGRSVSLD---SSEVTTAIAKALQPIKVIFLNRSGG  198 (271)
T ss_pred             cccCCccceEEEECHHHHHH-----HHhCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCcc
Confidence              2222 2454555554443     357899999999 8888 589999999   9999999999999999999999999


Q ss_pred             cccCCCCCCCCCccccccCH-HHHHHHHHcCC--Ccc---hHH--HHHHHHhCCCCEEEec
Q 012808          312 VLTCDPNIHPHAKPVPYLTF-DEAAELAYFGA--QVL---HPQ--SMRPAREGDIPVRVKN  364 (456)
Q Consensus       312 V~taDP~~v~~Ak~i~~ls~-~Ea~eLa~~Ga--~vl---hp~--a~~~a~~~~Ipv~I~n  364 (456)
                      ||+.      +.++|++|+. +|..+|...|.  ..|   -|+  ++..+...+..++|.+
T Consensus       199 V~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~  253 (271)
T cd04236         199 LRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS  253 (271)
T ss_pred             eECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC
Confidence            9973      2578999995 99999988763  455   454  6667788899999887

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.68  E-value=7.2e-16  Score=155.76  Aligned_cols=119  Identities=13%  Similarity=0.107  Sum_probs=87.6

Q ss_pred             hccccCCceEEEcCC--CcCCCCCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCH
Q 012808          255 GDWITDLAIPIVTGF--LGKAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF  331 (456)
Q Consensus       255 ~~ll~~~~VpVv~Gf--ig~~~~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~  331 (456)
                      ..+++.+.|||++|.  ++....++.+.+.. -+.+|..|+.+|.+|+|++++++|||||||++||  .|++++|+++++
T Consensus       179 ~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i~~i~~  256 (314)
T PRK12353        179 KTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKLDEVTV  256 (314)
T ss_pred             HHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeECcCcCH
Confidence            345688999999975  22211233332211 3558999999999999999999999999999766  389999999999


Q ss_pred             HHHHHHHHc---CCCcchHH--HH-HHH-HhCCCCEEEecCCC------CCCCceEEe
Q 012808          332 DEAAELAYF---GAQVLHPQ--SM-RPA-REGDIPVRVKNSYN------PNAPGTLIR  376 (456)
Q Consensus       332 ~Ea~eLa~~---Ga~vlhp~--a~-~~a-~~~~Ipv~I~n~~~------p~~~GT~I~  376 (456)
                      +|+.++...   +...|.|+  ++ +.+ .+.+++++|.|..+      .+ .||+|.
T Consensus       257 ~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i~  313 (314)
T PRK12353        257 SEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVIV  313 (314)
T ss_pred             HHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEec
Confidence            999988743   45678885  44 445 47789999987422      22 688884

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.66  E-value=2.4e-15  Score=143.07  Aligned_cols=135  Identities=18%  Similarity=0.163  Sum_probs=95.8

Q ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCC
Q 012808          190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF  269 (456)
Q Consensus       190 ~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gf  269 (456)
                      ++...|++..++-.+|+.+++..+...++                         .+..++...     +..+.+||+.++
T Consensus        50 ~~~~ad~mgilat~~na~~l~~~~~~~~~-------------------------~~~~~~~~~-----~~~g~ipV~~P~   99 (203)
T cd04240          50 SDAAAHWMAILAMEQYGYLLADLEPRLVA-------------------------RTLAELTDV-----LERGKIAILLPY   99 (203)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhccCCcccc-------------------------CCHHHHHHH-----HHCCCcEEEeCc
Confidence            45667888888888888876532211110                         012233332     356789999775


Q ss_pred             Cc---CCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcch
Q 012808          270 LG---KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH  346 (456)
Q Consensus       270 ig---~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlh  346 (456)
                      --   .+ ..++..++.   +|..|+.+|..|+|+.+++.|||||||++|      ++++++++++|+.+     ..+++
T Consensus       100 ~~~~~~~-~~~~~~~~t---tD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~-----~~~id  164 (203)
T cd04240         100 RLLLDTD-PLPHSWEVT---SDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG-----ETSVD  164 (203)
T ss_pred             hhhcccC-CCCcccccC---HHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC-----CCeeh
Confidence            21   01 122233333   899999999999999999999999999865      89999999987643     56777


Q ss_pred             HHHHHHHHhCCCCEEEecCCCCC
Q 012808          347 PQSMRPAREGDIPVRVKNSYNPN  369 (456)
Q Consensus       347 p~a~~~a~~~~Ipv~I~n~~~p~  369 (456)
                      +-+.+.+.++++|++|.|+.+|+
T Consensus       165 ~~~~~~~~~~gi~v~I~~g~~~~  187 (203)
T cd04240         165 PAFPRLLTKYGIRCYVVNGDDPE  187 (203)
T ss_pred             hhHHHHHHhCCCeEEEECCCCcc
Confidence            76777889999999999988774

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>PLN02825 amino-acid N-acetyltransferase

Probab=99.63  E-value=1.4e-14  Score=154.53  Aligned_cols=196  Identities=16%  Similarity=0.200  Sum_probs=137.3

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .+.|+||||+.+.++ .+..++..|....  +.++|+|+ +.+..-|++++                             
T Consensus        18 ktfVIk~gG~~l~~~-~~~~l~~DialL~~lGi~~VlVH-GggpqI~~~l~-----------------------------   66 (515)
T PLN02825         18 STFVVVISGEVVAGP-HLDNILQDISLLHGLGIKFVLVP-GTHVQIDKLLA-----------------------------   66 (515)
T ss_pred             CEEEEEECchhhcCc-hHHHHHHHHHHHHHCCCCEEEEc-CCCHHHHHHHH-----------------------------
Confidence            579999999999887 6888888877542  34555555 55554444443                             


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHH--------HHHHcCCce----EEeccc
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAA--------YLNKIGVKA----RQYDAF  226 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~--------~L~~~Gi~a----~~ld~~  226 (456)
                        +++++++           +.+|++++.   +.+.+.+....-.++..|.+.        .|+++|+++    ..+...
T Consensus        67 --~~gi~~~-----------f~~G~RVTd---~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~  130 (515)
T PLN02825         67 --ERGREPK-----------YVGAYRITD---SAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVA  130 (515)
T ss_pred             --HcCCCce-----------eeCCcccCC---HHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEec
Confidence              1223221           445555543   444444433344567776654        489999999    777777


Q ss_pred             ceeEEeec--------CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHH
Q 012808          227 DIGFITTD--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA  297 (456)
Q Consensus       227 ~~~iit~~--------~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~  297 (456)
                      +.++++..        +|+. .+|..++...++.     +++.|.|||++. +|.+ .+|++.+++   +|..|+.+|.+
T Consensus       131 ~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~-----~L~~g~Ipvisp-lg~s-~~Ge~~Nin---aD~vA~avA~a  200 (515)
T PLN02825        131 SGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKE-----RLDSNCIVLLSN-LGYS-SSGEVLNCN---TYEVATACALA  200 (515)
T ss_pred             cCcEEEEEECCCCcCccccceeeEEEEcHHHHHH-----HHhCCCeEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHH
Confidence            77778774        3333 2455555544443     467899999998 7888 589999999   99999999999


Q ss_pred             cCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHc
Q 012808          298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF  340 (456)
Q Consensus       298 L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~  340 (456)
                      |+|++++++||++ +++.      +.+++++|+.+|+.+|...
T Consensus       201 L~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~  236 (515)
T PLN02825        201 IGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRK  236 (515)
T ss_pred             cCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHh
Confidence            9999999999977 5542      3578999999999988653

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.62  E-value=8.3e-15  Score=147.69  Aligned_cols=88  Identities=14%  Similarity=0.166  Sum_probs=69.4

Q ss_pred             ChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcC---CCcchHH--HHHHHHhCC-CCE
Q 012808          287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG---AQVLHPQ--SMRPAREGD-IPV  360 (456)
Q Consensus       287 SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~-Ipv  360 (456)
                      .|..|+.+|.+|+|++++|+|||+|||..+|+  |++++|++++.+|+.++...|   ...|-|+  ++..+.+.+ .++
T Consensus       216 aD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v  293 (316)
T PRK12352        216 KDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEV  293 (316)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeE
Confidence            89999999999999999999999999987654  678899999999999998754   3468885  443444555 579


Q ss_pred             EEecCC------CCCCCceEEee
Q 012808          361 RVKNSY------NPNAPGTLIRR  377 (456)
Q Consensus       361 ~I~n~~------~p~~~GT~I~~  377 (456)
                      +|.+..      +.+ .||+|..
T Consensus       294 ~I~~~~~i~~al~g~-~GT~I~~  315 (316)
T PRK12352        294 IITTPECLPAALRGE-TGTHIIK  315 (316)
T ss_pred             EEcchHHHHHHHcCC-CCeEEEe
Confidence            988632      222 7898864

>TIGR00746 arcC carbamate kinase

Probab=99.60  E-value=4.1e-14  Score=142.39  Aligned_cols=118  Identities=16%  Similarity=0.219  Sum_probs=85.1

Q ss_pred             ccccCCceEEEcCC--CcCCCCCCceeec-cCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808          256 DWITDLAIPIVTGF--LGKAWRTCAITTL-GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD  332 (456)
Q Consensus       256 ~ll~~~~VpVv~Gf--ig~~~~~G~vttl-gRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~  332 (456)
                      .+++.|.++|.+|.  ++.-.++|.+... -.+..|..|+++|..|+||.++++|||||||++ | ..|++++|++++++
T Consensus       177 ~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~-~~p~a~~i~~it~~  254 (310)
T TIGR00746       177 TLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN-Y-GKPDEKALREVTVE  254 (310)
T ss_pred             HHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-C-CCCCCcCCcCcCHH
Confidence            35677876666643  3331134443211 124689999999999999999999999999996 4 35899999999999


Q ss_pred             HHHHHHH---cCCCcchHH---HHHHHHhCCCCEEEecCC------CCCCCceEEe
Q 012808          333 EAAELAY---FGAQVLHPQ---SMRPAREGDIPVRVKNSY------NPNAPGTLIR  376 (456)
Q Consensus       333 Ea~eLa~---~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~------~p~~~GT~I~  376 (456)
                      |+.++..   ++...|.||   |++.+.+.+++++|.|..      +.+ .||+|.
T Consensus       255 e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I~  309 (310)
T TIGR00746       255 ELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRVT  309 (310)
T ss_pred             HHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEEe
Confidence            9999874   455678775   446666677899998732      123 688885

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.56  E-value=1e-13  Score=139.04  Aligned_cols=118  Identities=19%  Similarity=0.251  Sum_probs=87.3

Q ss_pred             ccccCCceEEEcCCCcCCC--CCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808          256 DWITDLAIPIVTGFLGKAW--RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD  332 (456)
Q Consensus       256 ~ll~~~~VpVv~Gfig~~~--~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~  332 (456)
                      .+++.+.|||+.|--|...  .+|...+.. -...|++|+++|..|+|+.++++|||||||+.+|  .|++++|++++++
T Consensus       176 ~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is~~  253 (308)
T cd04235         176 TLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVTVE  253 (308)
T ss_pred             HHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcCHH
Confidence            3568899999987422211  122222110 2346999999999999999999999999999654  4899999999999


Q ss_pred             HHHHHHH---cCCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEE
Q 012808          333 EAAELAY---FGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLI  375 (456)
Q Consensus       333 Ea~eLa~---~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I  375 (456)
                      |+.++..   +++..|+||   +++.+.+.+++++|.+..+-     ...||+|
T Consensus       254 e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~~GT~I  307 (308)
T cd04235         254 ELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGKAGTVI  307 (308)
T ss_pred             HHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCCCCeEE
Confidence            9999985   566789998   67777777789999764220     1258876

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=99.51  E-value=8.7e-13  Score=126.01  Aligned_cols=156  Identities=21%  Similarity=0.190  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808          203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL  282 (456)
Q Consensus       203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl  282 (456)
                      .++.. ++..|.+.|++++...|...  .+.    +.++.......+..     +++.+.|||+.|-+-.+..+| ...+
T Consensus        81 ~L~~~-V~~~l~~~Gv~av~~~P~s~--~~~----~gr~~~~~l~~i~~-----~l~~gfvPvl~GDVv~d~~~g-~~Ii  147 (252)
T COG1608          81 ELNSI-VVDALLDAGVRAVSVVPISF--STF----NGRILYTYLEAIKD-----ALEKGFVPVLYGDVVPDDDNG-YEII  147 (252)
T ss_pred             HHHHH-HHHHHHhcCCccccccCcce--eec----CCceeechHHHHHH-----HHHcCCEeeeecceEEcCCCc-eEEE
Confidence            34444 45678899999986666553  221    12222111122222     357899999999765543223 2223


Q ss_pred             cCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcC-CC---cch--HHHHHHHHhC
Q 012808          283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG-AQ---VLH--PQSMRPAREG  356 (456)
Q Consensus       283 gRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G-a~---vlh--p~a~~~a~~~  356 (456)
                      .   .|-.+..||..|+++++.|.|||||||+.||.++|+++.+.++...++  +..-+ ..   .|-  -+++....+.
T Consensus       148 S---GDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~--~~gs~~~DVTGGi~~Kl~~~~~~~~~  222 (252)
T COG1608         148 S---GDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVA--LGGSGGTDVTGGIAKKLEALLEIARY  222 (252)
T ss_pred             e---ccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhh--hcCcCcccchhhHHHHHHHHHHHHhc
Confidence            3   599999999999999999999999999999999999999888765432  21111 11   233  3466666777


Q ss_pred             CCCEEEecCCCCC---------CCceEEe
Q 012808          357 DIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       357 ~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      +-++++.|+..|+         ..||+|.
T Consensus       223 ~~~vyi~ng~~~~ni~~~l~G~~vGT~I~  251 (252)
T COG1608         223 GKEVYIFNGNKPENIYRALRGENVGTRID  251 (252)
T ss_pred             CceEEEECCCCHHHHHHHhcCCCCceEec
Confidence            7889999987664         6788885

>PRK12686 carbamate kinase; Reviewed

Probab=99.48  E-value=2.1e-12  Score=129.77  Aligned_cols=120  Identities=14%  Similarity=0.146  Sum_probs=86.6

Q ss_pred             hccccCCceEEEcCCCc--CCCCCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCH
Q 012808          255 GDWITDLAIPIVTGFLG--KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF  331 (456)
Q Consensus       255 ~~ll~~~~VpVv~Gfig--~~~~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~  331 (456)
                      +.|++.|.|||.+|--|  .-.++|.+.... -+..|..|+.||.+|+|+.++|+|||+|||+ ||. .|++++|++++.
T Consensus       177 ~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~I~~I~~  254 (312)
T PRK12686        177 RTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQKLDDITV  254 (312)
T ss_pred             HHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeECCccCH
Confidence            34567899999876522  211244433332 3568999999999999999999999999999 565 488999999999


Q ss_pred             HHHHHHHHc---CCCcchHH--HHHHHHh--CCCCEEEecCCCC-----CCCceEEe
Q 012808          332 DEAAELAYF---GAQVLHPQ--SMRPARE--GDIPVRVKNSYNP-----NAPGTLIR  376 (456)
Q Consensus       332 ~Ea~eLa~~---Ga~vlhp~--a~~~a~~--~~Ipv~I~n~~~p-----~~~GT~I~  376 (456)
                      +|+.++...   +...|.||  ++..+.+  .+.+++|.+..+.     ...||+|.
T Consensus       255 ~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~~GT~I~  311 (312)
T PRK12686        255 AEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGNAGTHIT  311 (312)
T ss_pred             HHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCCCCeEEe
Confidence            999998754   44679887  4444443  3578888874321     12688884

>PRK04531 acetylglutamate kinase; Provisional

Probab=99.41  E-value=2.5e-12  Score=133.84  Aligned_cols=109  Identities=21%  Similarity=0.345  Sum_probs=79.5

Q ss_pred             ccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCH-HHHHH
Q 012808          258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF-DEAAE  336 (456)
Q Consensus       258 l~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~-~Ea~e  336 (456)
                      ++.|.|||+++ +|.+ .+|++.+++   +|..|+.+|.+|+|++++++|||+|||+.|      .+++++|+. +|...
T Consensus       126 L~~g~IPVlsp-lg~~-~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~  194 (398)
T PRK04531        126 LRAGSIPVIAS-LGET-PSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDH  194 (398)
T ss_pred             HHCCCEEEEeC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHH
Confidence            56889999987 5666 479988898   999999999999999999999999999743      678999996 57777


Q ss_pred             HHHcCC--CcchHH--HHHHHHhCCCC-EEEecCCCC----------CCCceEEeec
Q 012808          337 LAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPGTLIRRS  378 (456)
Q Consensus       337 La~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~GT~I~~~  378 (456)
                      |...|.  ..|.|+  ++..+.+ ++| +.+.....|          +..||+|...
T Consensus       195 l~~~~~vtgGM~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g  250 (398)
T PRK04531        195 LMQQPWINGGMKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRG  250 (398)
T ss_pred             HHhcCCCCccHHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence            765432  456665  4444443 333 332222222          3479999764

>PRK12354 carbamate kinase; Reviewed

Probab=99.41  E-value=4.5e-12  Score=126.91  Aligned_cols=121  Identities=20%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             hccccCCceEEEcCCCcCC--C-CCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccC
Q 012808          255 GDWITDLAIPIVTGFLGKA--W-RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT  330 (456)
Q Consensus       255 ~~ll~~~~VpVv~Gfig~~--~-~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls  330 (456)
                      ..|++.+.|||.+|.=|..  . .+|...... -.+.|.+|+.||..|+|+.++|+|||||||++++  .|++++|++++
T Consensus       169 ~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~it  246 (307)
T PRK12354        169 RWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQAT  246 (307)
T ss_pred             HHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCCCC
Confidence            3456788887776532221  1 113222111 3468999999999999999999999999999754  48899999999


Q ss_pred             HHHHHHHHHcCCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEEeec
Q 012808          331 FDEAAELAYFGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRRS  378 (456)
Q Consensus       331 ~~Ea~eLa~~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~~  378 (456)
                      ++|+.++ .++...|.||   +++.+.+.+.+++|.+..+.     ...||+|.+.
T Consensus       247 ~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~~GT~I~~~  301 (307)
T PRK12354        247 PDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGEAGTRISPE  301 (307)
T ss_pred             HHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCCceEEecC
Confidence            9999988 6777889987   44555566667888643210     1369999764

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.38  E-value=3.6e-11  Score=120.80  Aligned_cols=119  Identities=19%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             ccccCCceEEEcCCCc--CCCCCCceeecc-CCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808          256 DWITDLAIPIVTGFLG--KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD  332 (456)
Q Consensus       256 ~ll~~~~VpVv~Gfig--~~~~~G~vttlg-RGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~  332 (456)
                      .+++.+.|||++|.-|  .-..+|++.++. -...|.+|+.+|..|+||+++|+|||||||+. |+ .|++++|++++++
T Consensus       180 ~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i~~It~~  257 (313)
T PRK12454        180 ALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPLDKVTVE  257 (313)
T ss_pred             HHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEccccCHH
Confidence            3567899999987422  111345443322 23479999999999999999999999999985 43 5789999999999


Q ss_pred             HHHHHHHc---CCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEEe
Q 012808          333 EAAELAYF---GAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR  376 (456)
Q Consensus       333 Ea~eLa~~---Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~  376 (456)
                      |+.++...   +...|.||   +++.+.+.+.+++|.+..+.     ...||+|.
T Consensus       258 e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~~GT~I~  312 (313)
T PRK12454        258 EAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGKTGTRII  312 (313)
T ss_pred             HHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCCCCeEeC
Confidence            99888753   34568885   44555556678888753221     12688885

>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]

Probab=99.33  E-value=1.5e-11  Score=116.64  Aligned_cols=159  Identities=16%  Similarity=0.273  Sum_probs=112.9

Q ss_pred             HHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCC
Q 012808          197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT  276 (456)
Q Consensus       197 i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~  276 (456)
                      +.+.|+-=-..+.-..+.++|+..     .++ ++|..++.+    +..+.++...+.+ |+.-+.|||+.-       |
T Consensus        92 ~AAvGQ~~Lmalye~lF~Qy~~~i-----AQv-LvT~~Di~d----~~~r~Nl~~Ti~e-LL~m~viPIvNe-------N  153 (285)
T KOG1154|consen   92 CAAVGQSGLMALYETLFTQYGITI-----AQV-LVTRNDILD----EQQRKNLQNTISE-LLSMNVIPIVNE-------N  153 (285)
T ss_pred             HHHhCcchHHHHHHHHHHHhccch-----hee-eecCcchhh----HHHHHHHHHHHHH-HHhCCceeeecC-------C
Confidence            444454444445666788999876     455 677665443    3345666666654 577899999943       4


Q ss_pred             Cceee--ccCCC---ChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHH------HHHcCCCcc
Q 012808          277 CAITT--LGRGG---SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAE------LAYFGAQVL  345 (456)
Q Consensus       277 G~vtt--lgRGG---SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~e------La~~Ga~vl  345 (456)
                      +.+.+  ..+|.   +|..|+++|..++||.++++|||+|+||..|. ...+++++..+..+...      -+..|...|
T Consensus       154 Davs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd-~~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM  232 (285)
T KOG1154|consen  154 DAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPD-ADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGM  232 (285)
T ss_pred             CccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCC-CCcceeeeeeccCCCCCccccCccCccCcCcc
Confidence            43332  45666   89999999999999999999999999995444 34577888887766542      233455678


Q ss_pred             hHH--HHHHHHhCCCCEEEecCCCCCCCceE
Q 012808          346 HPQ--SMRPAREGDIPVRVKNSYNPNAPGTL  374 (456)
Q Consensus       346 hp~--a~~~a~~~~Ipv~I~n~~~p~~~GT~  374 (456)
                      ..+  |+..|...|+++.|.|+..|+..++.
T Consensus       233 ~tKv~AA~~A~~~Gv~viI~~g~~p~~I~~i  263 (285)
T KOG1154|consen  233 ETKVKAAVNALNAGVSVIITNGDAPENITDI  263 (285)
T ss_pred             hhhHHHHHHHhcCCceEEEeCCCChHHHHHH
Confidence            764  88899999999999999999854333

>PRK09411 carbamate kinase; Reviewed

Probab=99.19  E-value=1.2e-09  Score=108.85  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=83.2

Q ss_pred             ccccCCceEEEcCC--CcCCC-CCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808          256 DWITDLAIPIVTGF--LGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD  332 (456)
Q Consensus       256 ~ll~~~~VpVv~Gf--ig~~~-~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~  332 (456)
                      .|++++.|||.+|.  ++... .+|...+.+   .|.+|+.||.+|+|+.++|+|||+|||..++  .|++++|++++.+
T Consensus       171 ~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vID---kD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~~  245 (297)
T PRK09411        171 LLLKEGHVVICSGGGGVPVTEDGAGSEAVID---KDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATPD  245 (297)
T ss_pred             HHHHCCCEEEecCCCCCCeEEcCCCeEEecC---HHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCHH
Confidence            35678888888642  33221 124333344   7999999999999999999999999998643  5788999999999


Q ss_pred             HHHHHHHcCCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEEe
Q 012808          333 EAAELAYFGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR  376 (456)
Q Consensus       333 Ea~eLa~~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~  376 (456)
                      |+.++.. ....|.||   +++.+...+.+++|.+..+.     ...||+|.
T Consensus       246 e~~~~~~-~~GgM~pKVeAA~~~v~~~g~~a~I~~l~~~~~~l~G~~GT~I~  296 (297)
T PRK09411        246 ELAPFAK-ADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCIS  296 (297)
T ss_pred             HHHHhcc-CCCCcHHHHHHHHHHHHhCCCeEEECChhHHHHHHCCCCCeEEe
Confidence            9977764 34568887   45667777889998763221     13588874

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=98.89  E-value=5.9e-08  Score=89.25  Aligned_cols=88  Identities=27%  Similarity=0.332  Sum_probs=75.1

Q ss_pred             CCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHh
Q 012808          276 TCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE  355 (456)
Q Consensus       276 ~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~  355 (456)
                      .+++|      ||..+..+|+.+++.++++.|||||||+.+|.    ++++++|+..|...    |-..++|-.=+.+.+
T Consensus       113 SW~VT------SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k  178 (212)
T COG2054         113 SWEVT------SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVK  178 (212)
T ss_pred             ceeec------ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHH
Confidence            45788      99999999999999999999999999998874    58999988766543    667889888888999


Q ss_pred             CCCCEEEecCCCCC----------CCceEEee
Q 012808          356 GDIPVRVKNSYNPN----------APGTLIRR  377 (456)
Q Consensus       356 ~~Ipv~I~n~~~p~----------~~GT~I~~  377 (456)
                      .++..+|.|+.+|+          .+||+|.+
T Consensus       179 ~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         179 YKMNCRVVNGKEPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             cCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence            99999999999886          36777653

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=98.83  E-value=1e-08  Score=82.99  Aligned_cols=58  Identities=93%  Similarity=1.286  Sum_probs=53.4

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCcHHHHh
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQ  452 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~~~l~~  452 (456)
                      +++|+|.+.+|.+.||+++++|+.|+++||||+||++++.++||+|+.++.+.+.+++
T Consensus         1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~qs~~sISftV~~sd~~~~~~~~   58 (78)
T cd04933           1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSEVSISLTLDPSKLWSRELIQ   58 (78)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEecCCEEEEEEEhhhhhhhhhHH
Confidence            4789999999999999999999999999999999999999999999999987655554

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=98.75  E-value=3.6e-08  Score=79.21  Aligned_cols=53  Identities=45%  Similarity=0.606  Sum_probs=49.2

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +++|+|.+.+|.+.||+++++|+.|+++||||+||++|+.++||+|+.++...
T Consensus         1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s~~~iSftv~~~d~~~   53 (75)
T cd04932           1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSEISVALTLDNTGSTS   53 (75)
T ss_pred             CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeecCCEEEEEEeccccch
Confidence            47899988899999999999999999999999999999999999999988553

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=98.69  E-value=3.2e-08  Score=76.66  Aligned_cols=53  Identities=21%  Similarity=0.345  Sum_probs=49.6

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +++|+++|.+|...||+++++|++|+++||++.++++||.+|+|+|++++...
T Consensus         1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v~~~~~~~   53 (64)
T cd04937           1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDVKE   53 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEEcHHHHHH
Confidence            47899999999999999999999999999999999999999999999987643

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=98.61  E-value=9.1e-08  Score=74.65  Aligned_cols=56  Identities=23%  Similarity=0.398  Sum_probs=51.2

Q ss_pred             EecCeEEEEEEeCCCCC-chhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          391 LKRNVTMLDIVSTRMLG-QYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       391 ~~~nvalIsv~g~~m~~-~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ..++++.|+|.|.+|.. .||+++++|+.|+++||||.+++ |+.+++++|+++++..
T Consensus         2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-S~~~~~ilV~~~~~~~   58 (65)
T PF13840_consen    2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-SEISISILVKEEDLEK   58 (65)
T ss_dssp             EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-ESSEEEEEEEGGGHHH
T ss_pred             ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-EeeeEEEEEeHHHHHH
Confidence            46889999999999977 99999999999999999999999 9999999999988754

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=98.60  E-value=1.6e-07  Score=75.46  Aligned_cols=50  Identities=40%  Similarity=0.728  Sum_probs=47.9

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCC
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK  444 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d  444 (456)
                      +++|++.+.+|.+.+|+++++|++|+++||||+||++++.+++|+|+.++
T Consensus         1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s~~~isftv~~~~   50 (75)
T cd04935           1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPDP   50 (75)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEeCcc
Confidence            46899999999999999999999999999999999999999999999887

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=98.58  E-value=1.7e-07  Score=74.84  Aligned_cols=52  Identities=31%  Similarity=0.507  Sum_probs=48.9

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      ++.|+|.+.+|.+.+|+++++|+.|+++|||++||++++.+++|+++.+++.
T Consensus         1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~s~~~isftv~~~~~~   52 (73)
T cd04934           1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTSEVHVSMALHMENAE   52 (73)
T ss_pred             CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEehhhcC
Confidence            4689999999999999999999999999999999999999999999988764

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=98.57  E-value=1.7e-07  Score=74.97  Aligned_cols=51  Identities=63%  Similarity=0.939  Sum_probs=48.6

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL  445 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~  445 (456)
                      +++|+++|.+|.+.+|+++++|+.|+++||+++++++|+.+|||+|++++.
T Consensus         1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s~~~is~~v~~~~~   51 (75)
T cd04912           1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSEVSVSLTLDPTKN   51 (75)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcCCcEEEEEEEchhh
Confidence            478999999999999999999999999999999999999999999999875

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=98.55  E-value=1.8e-07  Score=71.56  Aligned_cols=50  Identities=46%  Similarity=0.645  Sum_probs=47.1

Q ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      .|+|.+.+|.+.+|+.+++|+.|+++||+++|+++++.+++|+++.++..
T Consensus         2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t~~~~is~~v~~~~~~   51 (62)
T cd04890           2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSENSVTLYLDDSLLP   51 (62)
T ss_pred             EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEecCCCEEEEEEehhhhh
Confidence            57899999999999999999999999999999999999999999988753

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=98.50  E-value=8.9e-06  Score=80.07  Aligned_cols=115  Identities=18%  Similarity=0.233  Sum_probs=83.5

Q ss_pred             HhhccccCCceEEEcCCCcCCCCCCceeeccCCC----------ChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCC
Q 012808          253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG----------SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPH  322 (456)
Q Consensus       253 l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGG----------SD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~  322 (456)
                      .++.|+++|.++|..|-=      | +-+...++          -|+++++||..++||.++|+||||+||-.--+  |+
T Consensus       176 ~Ik~L~~~g~vVI~~GGG------G-IPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p~  246 (312)
T COG0549         176 AIKALLESGHVVIAAGGG------G-IPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--PN  246 (312)
T ss_pred             HHHHHHhCCCEEEEeCCC------C-cceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--cc
Confidence            344456788888887621      2 11221111          39999999999999999999999999965432  67


Q ss_pred             CccccccCHHHHHHHHHc---CCCcchHH---HHHHHHhCCCCEEEecCCCC-----CCCceEEe
Q 012808          323 AKPVPYLTFDEAAELAYF---GAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR  376 (456)
Q Consensus       323 Ak~i~~ls~~Ea~eLa~~---Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~  376 (456)
                      .+.|.+++.+|+.+....   ...-|-||   |+..++..|=+..|.+-.+-     ...||.|.
T Consensus       247 q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~  311 (312)
T COG0549         247 QQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIV  311 (312)
T ss_pred             chhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEec
Confidence            899999999999887754   45678887   77788777788888764331     24688875

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=98.48  E-value=2.8e-07  Score=71.11  Aligned_cols=52  Identities=23%  Similarity=0.500  Sum_probs=47.8

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW  446 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~  446 (456)
                      +++|+++|.+|.+.+++.+++|+.|+++||+++|++  +|+.+++|++++++..
T Consensus         1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~   54 (66)
T cd04919           1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAV   54 (66)
T ss_pred             CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHH
Confidence            478999999999999999999999999999999997  4889999999988754

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=98.42  E-value=5e-07  Score=69.46  Aligned_cols=52  Identities=25%  Similarity=0.431  Sum_probs=47.8

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW  446 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~  446 (456)
                      +++|+++|.+|.+.+++.+++|+.|+++||+++|++  +|+.+++|+|++++..
T Consensus         1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~   54 (66)
T cd04922           1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDAT   54 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHH
Confidence            478999999999999999999999999999999997  4889999999987754

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=98.33  E-value=9.3e-07  Score=68.73  Aligned_cols=51  Identities=18%  Similarity=0.379  Sum_probs=46.5

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      ++|+++|. +...+|+++++|++|+++||+|.|++  +|+.+|+|+|+++|...
T Consensus         2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~   54 (65)
T cd04918           2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEG   54 (65)
T ss_pred             cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHH
Confidence            68999998 77889999999999999999999998  89999999999987643

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=98.33  E-value=1.1e-06  Score=67.55  Aligned_cols=53  Identities=26%  Similarity=0.533  Sum_probs=48.1

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +++|+++|.++.+.+++.+++|+.|+++||+++|++  .++.+++|+++.++..+
T Consensus         1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~   55 (66)
T cd04924           1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWA   55 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHH
Confidence            478999999999999999999999999999999997  47899999999887644

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=98.32  E-value=9.9e-07  Score=68.93  Aligned_cols=52  Identities=15%  Similarity=0.307  Sum_probs=46.9

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se~sIsi~V~~~d~~~  447 (456)
                      +++|+++|.+|. .+|+++++|++|++.||++.|+++  |+.+||++|+++|...
T Consensus         2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~   55 (66)
T cd04915           2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDN   55 (66)
T ss_pred             EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHH
Confidence            689999999995 899999999999999999999986  6699999999887654

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=98.31  E-value=1.1e-06  Score=66.53  Aligned_cols=52  Identities=27%  Similarity=0.468  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ++|+++|.++.+.+++.+++|+.|+++||+++++++++.+++|+|+++|...
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~d~~~   52 (63)
T cd04936           1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTSEIKISCLIDEDDAEK   52 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEccCceEEEEEeHHHHHH
Confidence            4689999999999999999999999999999999999999999999987644

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=98.30  E-value=1.2e-06  Score=66.36  Aligned_cols=52  Identities=27%  Similarity=0.461  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ++|+++|.++.+.+++.+++|+.|++++|+++++++++.+++|+|+.++...
T Consensus         1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~~~~~   52 (63)
T cd04923           1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTSEIKISCLVDEDDAEK   52 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEccCCeEEEEEeHHHHHH
Confidence            3689999999999999999999999999999999999999999999887644

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=98.28  E-value=1.3e-06  Score=92.47  Aligned_cols=103  Identities=17%  Similarity=0.272  Sum_probs=75.3

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCc-eEEeeccCCc----------cceeeEEEEecCeEEEEEEeCCCCCchhHH
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPG-TLIRRSRDMS----------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFL  412 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~G-T~I~~~~~~~----------~~~i~~I~~~~nvalIsv~g~~m~~~~g~~  412 (456)
                      .+..+-+..+.+++|++-....... ..+ +...+..+..          ......+...+++++|+++|.+|.++||++
T Consensus       322 g~~a~vf~~l~~~~i~v~~I~q~~~-~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gva  400 (447)
T COG0527         322 GFAARVFGILAEAGINVDLITQSIS-EVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVA  400 (447)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEeccC-CCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCHH
Confidence            4455677778899998644322211 112 2222221100          001126788999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       413 akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +++|++|+++||||.|+++||.+|||+|++++...
T Consensus       401 a~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~  435 (447)
T COG0527         401 ARIFQALAEENINIIMISSSEISISFVVDEKDAEK  435 (447)
T ss_pred             HHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHH
Confidence            99999999999999999999999999999988654

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=98.28  E-value=1.6e-06  Score=66.58  Aligned_cols=53  Identities=17%  Similarity=0.325  Sum_probs=47.9

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se~sIsi~V~~~d~~~  447 (456)
                      +++|+++|.++...+++.+++|+.|+++||+++|+++  ++.+++|+|+.+|...
T Consensus         1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~   55 (66)
T cd04916           1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADK   55 (66)
T ss_pred             CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHH
Confidence            4789999999999999999999999999999999974  7899999999887543

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC)

Probab=98.22  E-value=1.4e-06  Score=67.33  Aligned_cols=52  Identities=12%  Similarity=0.190  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ++|+++|.+|...+|+++++|++|++.+|++.+..+|+.+|||+|+++|...
T Consensus         1 a~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~~is~vv~~~d~~~   52 (63)
T cd04920           1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLNLTFVVDEDQADG   52 (63)
T ss_pred             CEEEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCCeEEEEEeHHHHHH
Confidence            5799999999999999999999999999999888999999999999987643

This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00657 asp_kinases aspartate kinase

Probab=98.20  E-value=5.4e-06  Score=87.94  Aligned_cols=104  Identities=16%  Similarity=0.310  Sum_probs=77.4

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCC-----------ccceeeEEEEecCeEEEEEEeCCCCCchhHH
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM-----------SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFL  412 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~-----------~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~  412 (456)
                      .+-.+.+..+.+++|++.......++..=+......+.           ....+++|++.+|+++|+++|.+|.+.||++
T Consensus       316 g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~  395 (441)
T TIGR00657       316 GFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVA  395 (441)
T ss_pred             cHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchH
Confidence            34456778889999987766421111100111121110           0134678999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       413 akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +++|+.|+++||||+|+++|+.+|+|+|+.+|...
T Consensus       396 a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~  430 (441)
T TIGR00657       396 SKIFEALAQNGINIEMISSSEINISFVVDEKDAEK  430 (441)
T ss_pred             HHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHH
Confidence            99999999999999999999999999999887643

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06635 aspartate kinase; Reviewed

Probab=98.11  E-value=7.7e-06  Score=85.64  Aligned_cols=104  Identities=20%  Similarity=0.284  Sum_probs=79.2

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCC--C-ceEEeeccCCc-------c----ceeeEEEEecCeEEEEEEeCCCCCch
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNA--P-GTLIRRSRDMS-------K----AVLTSIVLKRNVTMLDIVSTRMLGQY  409 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~--~-GT~I~~~~~~~-------~----~~i~~I~~~~nvalIsv~g~~m~~~~  409 (456)
                      .+-.+.+..+.++||++...+...++.  . =+......+..       +    ..++.+++.+|+++++++|.+|.+.|
T Consensus       275 g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~ia~isvvG~~~~~~~  354 (404)
T PRK06635        275 GIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHP  354 (404)
T ss_pred             cHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCeEEEEEECCCCCCCc
Confidence            344467788899999988776654331  1 11222211100       0    13677999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       410 g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      |+++++|++|+++||||+++++|+.+++|+|+.+|...
T Consensus       355 g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~  392 (404)
T PRK06635        355 GVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLEL  392 (404)
T ss_pred             hHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHH
Confidence            99999999999999999999999999999999887643

>PRK06291 aspartate kinase; Provisional

Probab=98.11  E-value=1.1e-05  Score=86.30  Aligned_cols=103  Identities=17%  Similarity=0.341  Sum_probs=77.1

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc-----------cceeeEEEEecCeEEEEEEeCCCCCchhHH
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFL  412 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-----------~~~i~~I~~~~nvalIsv~g~~m~~~~g~~  412 (456)
                      .+..+.+..+.+++|++...+....+..=+...+..+..           ...++.|.+.+|+++|+++|.+|.+.+|++
T Consensus       336 g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gv~  415 (465)
T PRK06291        336 GTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVCVVAVVGAGMAGTPGVA  415 (465)
T ss_pred             cHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHHhcCcceEEeCCEEEEEEEcCCccCCcChH
Confidence            455677888899999987665321111001122221100           012567999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808          413 AKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW  446 (456)
Q Consensus       413 akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~  446 (456)
                      +++|++|+++||+|.||+  +|+.+|||+|++++..
T Consensus       416 ~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~  451 (465)
T PRK06291        416 GRIFSALGESGINIKMISQGSSEVNISFVVDEEDGE  451 (465)
T ss_pred             HHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHH
Confidence            999999999999999998  8999999999988754

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=98.10  E-value=1.1e-05  Score=84.28  Aligned_cols=104  Identities=19%  Similarity=0.287  Sum_probs=78.1

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc-----------cceeeEEEEecCeEEEEEEeCCCCCchhHH
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFL  412 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-----------~~~i~~I~~~~nvalIsv~g~~m~~~~g~~  412 (456)
                      .+-.+.+..+.+++|++...+....+..=+.+.+..+..           ...+..+...+|+++|+++|.+|.+.||++
T Consensus       275 g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~~~~~i~~~~~~a~IsvVG~~~~~~~g~~  354 (401)
T TIGR00656       275 GFLARIFGALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGAPGVA  354 (401)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcccCccHH
Confidence            344567778889999988776533221112222221110           011356788999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       413 akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +++|++|+++||||.++++|+.+|+|+|+++|...
T Consensus       355 a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~  389 (401)
T TIGR00656       355 SEIFSALEEKNINILMIGSSETNISFLVDEKDAEK  389 (401)
T ss_pred             HHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHH
Confidence            99999999999999999999999999999988654

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PLN02551 aspartokinase

Probab=98.04  E-value=1.6e-05  Score=85.85  Aligned_cols=101  Identities=15%  Similarity=0.230  Sum_probs=73.5

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc---------------ceeeEEEEecCeEEEEEEeCCCCCc
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK---------------AVLTSIVLKRNVTMLDIVSTRMLGQ  408 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~---------------~~i~~I~~~~nvalIsv~g~~m~~~  408 (456)
                      .+..+-+..+.+++|+|....+.+ ... +......+...               ..+..|.+.+++++|+++|. |...
T Consensus       381 g~~arvf~~l~~~~I~Vd~IssSe-~sI-s~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~~~  457 (521)
T PLN02551        381 GFLAKVFSTFEDLGISVDVVATSE-VSI-SLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQRS  457 (521)
T ss_pred             cHHHHHHHHHHHcCCcEEEEeccC-CEE-EEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CCCC
Confidence            345566777888888877665432 111 11111111000               12357888999999999998 8889


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          409 YGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       409 ~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +|+++++|++|+++||||+||+  +|+.+||++|+++|...
T Consensus       458 ~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~  498 (521)
T PLN02551        458 SLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQ  498 (521)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHH
Confidence            9999999999999999999998  78999999999987644

>PRK07431 aspartate kinase; Provisional

Probab=98.04  E-value=1.7e-05  Score=87.04  Aligned_cols=103  Identities=19%  Similarity=0.224  Sum_probs=78.1

Q ss_pred             chHHHHHHHHhCCCCEEEecCCCCCC--CceEEe---eccCCc-----------cceeeEEEEecCeEEEEEEeCCCCCc
Q 012808          345 LHPQSMRPAREGDIPVRVKNSYNPNA--PGTLIR---RSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRMLGQ  408 (456)
Q Consensus       345 lhp~a~~~a~~~~Ipv~I~n~~~p~~--~GT~I~---~~~~~~-----------~~~i~~I~~~~nvalIsv~g~~m~~~  408 (456)
                      +..+-+..+.+++|++-..+...+..  ..+.|+   +..+..           ......+.+.+++++|+++|.+|...
T Consensus       453 ~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~  532 (587)
T PRK07431        453 MAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGT  532 (587)
T ss_pred             HHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCC
Confidence            34557788999999988776643322  112222   211100           11234578899999999999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          409 YGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       409 ~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ||+++|+|++|+++||++.++++|+.+|+|+|++++..+
T Consensus       533 ~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~vV~~~~~~~  571 (587)
T PRK07431        533 PGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVK  571 (587)
T ss_pred             cCHHHHHHHHHHHCCCcEEEeeccceEEEEEEeHHHHHH
Confidence            999999999999999999999999999999999887644

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=98.01  E-value=7.9e-06  Score=60.30  Aligned_cols=50  Identities=42%  Similarity=0.661  Sum_probs=45.3

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCC--CEEEEEEcCCCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE--VSLSLTLDPSKL  445 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe--~sIsi~V~~~d~  445 (456)
                      ++|++.|.+|.+.+|+.+++|+.|++++|++++++++.  .+++|+++.++.
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~~   52 (60)
T cd04868           1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDL   52 (60)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHHH
Confidence            36899999998999999999999999999999999876  889999988754

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=98.01  E-value=1.2e-05  Score=64.40  Aligned_cols=53  Identities=34%  Similarity=0.522  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +++|+++|.+|.+.+++.+++|+.|++++|+++|++  +++.+++|+++.++...
T Consensus         1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~   55 (80)
T cd04921           1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADK   55 (80)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHH
Confidence            478999999999999999999999999999999997  46789999999877543

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>PRK09034 aspartate kinase; Reviewed

Probab=97.99  E-value=1.2e-05  Score=85.68  Aligned_cols=62  Identities=15%  Similarity=0.311  Sum_probs=57.4

Q ss_pred             eeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       386 i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +.+|++.+|+++|+++|.+|.+.+|+++++|++|+++||||+|++  +|+.+|||+|++++...
T Consensus       376 ~~~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~  439 (454)
T PRK09034        376 PDELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEK  439 (454)
T ss_pred             CceEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHH
Confidence            468999999999999999999999999999999999999999998  68999999999887543

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=97.97  E-value=1.4e-05  Score=60.15  Aligned_cols=52  Identities=27%  Similarity=0.509  Sum_probs=46.3

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CCCEEEEEEcCCCcCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWS  447 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se~sIsi~V~~~d~~~  447 (456)
                      ++|+++|.+|.+.+++.+++|+.|++++|+++++++  ++.+++|+++.++...
T Consensus         1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~   54 (65)
T cd04892           1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADK   54 (65)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHH
Confidence            478999999999999999999999999999999987  4599999999877543

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=97.93  E-value=1.4e-05  Score=64.24  Aligned_cols=52  Identities=25%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +.|++....|....||..|++++|+++||++++++|+.+++|++++++++..
T Consensus         2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~PSGID~~Siii~~~~~~~   53 (76)
T cd04911           2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMPSGIDDISIIIRDNQLTD   53 (76)
T ss_pred             ceEehhHhhccchhcHHHHHHHHHHHcCCCEeeecCCCccEEEEEEccccch
Confidence            4577788899999999999999999999999999999999999999997765

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=97.90  E-value=3.8e-05  Score=87.34  Aligned_cols=102  Identities=19%  Similarity=0.288  Sum_probs=75.8

Q ss_pred             chHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc---------------cceeeEEEEecCeEEEEEEeCCCCCch
Q 012808          345 LHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS---------------KAVLTSIVLKRNVTMLDIVSTRMLGQY  409 (456)
Q Consensus       345 lhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~---------------~~~i~~I~~~~nvalIsv~g~~m~~~~  409 (456)
                      +-.+.+..+.+++|++...+....+..=+...+..+..               ...++.|...+|+++|+++|.+|.+.+
T Consensus       331 ~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvvG~gm~~~~  410 (819)
T PRK09436        331 MASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVVGDGMRTHP  410 (819)
T ss_pred             HHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEEccCcccCc
Confidence            34567788889999987665221111112222221100               012667999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808          410 GFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW  446 (456)
Q Consensus       410 g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~  446 (456)
                      |+++++|++|++.||||.||+  +|+.+|||+|+++|..
T Consensus       411 gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~  449 (819)
T PRK09436        411 GIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDAT  449 (819)
T ss_pred             CHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHH
Confidence            999999999999999999998  8899999999998754

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=97.86  E-value=4.3e-05  Score=59.88  Aligned_cols=56  Identities=20%  Similarity=0.351  Sum_probs=45.0

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc-HHHHhh
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS-RELIQQ  453 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~-~~l~~~  453 (456)
                      +.|+|.+.  .+.+|+++++|+.|+++||+|+||+.+..+++|+++.++... .+++++
T Consensus         2 ~~vtv~~~--~~~~~~~a~if~~La~~~InvDmI~~~~~~isFtv~~~d~~~~~~il~~   58 (67)
T cd04914           2 TQIKVKAK--DNENDLQQRVFKALANAGISVDLINVSPEEVIFTVDGEVAEKAVDILEK   58 (67)
T ss_pred             eEEEEecC--CCCccHHHHHHHHHHHcCCcEEEEEecCCCEEEEEchhhHHHHHHHHHH
Confidence            56788864  466999999999999999999999755448999999988755 555554

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=97.83  E-value=3.3e-05  Score=59.52  Aligned_cols=51  Identities=16%  Similarity=0.356  Sum_probs=43.8

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +++|+++|.+|.+.+++++++|++|++  ++|.+++  +|+.+|+|+|+++|...
T Consensus         1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~~is~~V~~~~~~~   53 (64)
T cd04917           1 LALVALIGNDISETAGVEKRIFDALED--INVRMICYGASNHNLCFLVKEEDKDE   53 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecCccEEEEEEeHHHHHH
Confidence            479999999999999999999999976  6666665  78999999999887543

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05925 aspartate kinase; Provisional

Probab=97.75  E-value=0.00013  Score=77.36  Aligned_cols=97  Identities=9%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             HHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc----------ceeeEEEEecCeEEEEEEeCCCCCchhHHHHHH
Q 012808          347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK----------AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVF  416 (456)
Q Consensus       347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~----------~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif  416 (456)
                      .+-+..+.++||++.+.++.. ... +......+..+          ..+..+...+++++|+++|.+|.+ +++++++|
T Consensus       316 ~~if~~l~~~~I~vd~i~s~~-~si-s~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~  392 (440)
T PRK05925        316 EDVLGILRSLGIVPGLVMAQN-LGV-YFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFT  392 (440)
T ss_pred             HHHHHHHHHcCCcEEEEeccC-CEE-EEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHH
Confidence            467788899999985553332 111 11112111100          123468889999999999999987 78999999


Q ss_pred             HHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          417 STFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       417 ~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      ++|++.||||.++++|+.+|||+|+++|..
T Consensus       393 ~aL~~~~Ini~~i~~s~~~is~vV~~~d~~  422 (440)
T PRK05925        393 EKLRGYQTPVFCWCQSDMALNLVVNEELAV  422 (440)
T ss_pred             HHHhhCCCCEEEEECCCceEEEEEehHHHH
Confidence            999999999999999999999999998754

>PRK08210 aspartate kinase I; Reviewed

Probab=97.75  E-value=5.1e-05  Score=79.58  Aligned_cols=102  Identities=20%  Similarity=0.288  Sum_probs=76.8

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc--ce---e-eEEEEecCeEEEEEEeCCCCCchhHHHHHHH
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK--AV---L-TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFS  417 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~--~~---i-~~I~~~~nvalIsv~g~~m~~~~g~~akif~  417 (456)
                      .+..+-+..+.++||++...+... + .++..-...+..+  ..   . ..+...+|+++|+++|.+|.+.||+++++|+
T Consensus       284 g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~~~~~g~~~~i~~  361 (403)
T PRK08210        284 DLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSDEDSEKAKEILENLGLKPSVRENCAKVSIVGAGMAGVPGVMAKIVT  361 (403)
T ss_pred             hHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcHHHHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCcCCCccHHHHHHH
Confidence            455567778899999987665443 2 2343333211110  00   0 1577889999999999999999999999999


Q ss_pred             HHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          418 TFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       418 ~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +|+++||+|.++++|+.+|+|+|++++...
T Consensus       362 aL~~~~I~i~~~~~s~~~is~vv~~~~~~~  391 (403)
T PRK08210        362 ALSEEGIEILQSADSHTTIWVLVKEEDMEK  391 (403)
T ss_pred             HHHhCCCCEEEEecCCCEEEEEEcHHHHHH
Confidence            999999999999999999999999987543

>PRK09181 aspartate kinase; Validated

Probab=97.66  E-value=6.5e-05  Score=80.41  Aligned_cols=100  Identities=15%  Similarity=0.184  Sum_probs=68.9

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeecc-CC-c-------c-ceeeEEEEecCeEEEEEEeCCCCCchhHHH
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR-DM-S-------K-AVLTSIVLKRNVTMLDIVSTRMLGQYGFLA  413 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~-~~-~-------~-~~i~~I~~~~nvalIsv~g~~m~~~~g~~a  413 (456)
                      .+..+-+..+.+++|++....+... .. +...... +. .       + -....+.. +++++|+++|.+|. .+|+.+
T Consensus       344 g~~~~if~~l~~~~i~v~~i~ss~~-si-s~~v~~~~~~~~~~~~~L~~~~~~~~i~~-~~~a~VsvVG~gm~-~~gv~a  419 (475)
T PRK09181        344 GYDLEILEILTRHKVSYISKATNAN-TI-THYLWGSLKTLKRVIAELEKRYPNAEVTV-RKVAIVSAIGSNIA-VPGVLA  419 (475)
T ss_pred             hHHHHHHHHHHHcCCeEEEEEecCc-EE-EEEEcCChHHHHHHHHHHHHhcCCceEEE-CCceEEEEeCCCCC-cccHHH
Confidence            3445666777888888765543221 11 1111111 00 0       0 01124554 99999999999994 899999


Q ss_pred             HHHHHHHhCCCcEEEEEeC--CCEEEEEEcCCCcCc
Q 012808          414 KVFSTFEDLGISVDVVATS--EVSLSLTLDPSKLWS  447 (456)
Q Consensus       414 kif~~L~~~gI~V~~IstS--e~sIsi~V~~~d~~~  447 (456)
                      ++|++|++.||||.|++++  |.+||++|+++|...
T Consensus       420 k~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~  455 (475)
T PRK09181        420 KAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEK  455 (475)
T ss_pred             HHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHH
Confidence            9999999999999999865  999999999987653

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=97.58  E-value=0.0002  Score=81.28  Aligned_cols=102  Identities=8%  Similarity=0.049  Sum_probs=75.3

Q ss_pred             chHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC-Cc--------cceeeEEEEecCeEEEEEEeCCCCCchhHHHHH
Q 012808          345 LHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD-MS--------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKV  415 (456)
Q Consensus       345 lhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~-~~--------~~~i~~I~~~~nvalIsv~g~~m~~~~g~~aki  415 (456)
                      +..+-+..+.+++|++...+....+ ....+.-..+ ..        ......|.+.+++++|+++|.+|.+.+|+++++
T Consensus       333 ~~~~if~~l~~~~I~v~~i~~~~s~-~sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~VsvVG~gm~~~~gv~~~~  411 (810)
T PRK09466        333 AQKELDQLLKRAQLRPLAVGVHPDR-QLLQLAYTSEVADSALKLLDDAALPGELKLREGLALVALVGAGVTRNPLHCHRF  411 (810)
T ss_pred             HHHHHHHHHHHCCCeEEEEEecCCC-cEEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEEEeCCCcccCccHHHHH
Confidence            3456777788999987766433211 1122221110 00        002256888999999999999999999999999


Q ss_pred             HHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          416 FSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       416 f~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      |++|++.||++.++++|+.+||++|+++|...
T Consensus       412 f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~  443 (810)
T PRK09466        412 YQQLKDQPVEFIWQSEDGLSLVAVLRQGPTES  443 (810)
T ss_pred             HHHHHhCCCcEEEEeCCCcEEEEEEehHHHHH
Confidence            99999999999999999999999999987543

>PRK08841 aspartate kinase; Validated

Probab=97.57  E-value=0.00011  Score=76.78  Aligned_cols=94  Identities=18%  Similarity=0.198  Sum_probs=69.1

Q ss_pred             HHHHHHHHhCCCCEEEecCCCCCCCce-EEeeccCCc---cceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhC
Q 012808          347 PQSMRPAREGDIPVRVKNSYNPNAPGT-LIRRSRDMS---KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDL  422 (456)
Q Consensus       347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT-~I~~~~~~~---~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~  422 (456)
                      ++.+..+.+++|++.......   ... .+.+..+..   ......+...+|+++|+++|.+|   ||+++++|++|+++
T Consensus       269 ~~i~~~l~~~~i~v~~i~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~~---~gv~~~~~~aL~~~  342 (392)
T PRK08841        269 PSLTKQCQMLGIEVWNVIEEA---DRAQIVIKQDACAKLKLVFDDKIRNSESVSLLTLVGLEA---NGMVEHACNLLAQN  342 (392)
T ss_pred             HHHHHHHHHcCCCEEEEEecC---CcEEEEECHHHHHHHHHhCcccEEEeCCEEEEEEECCCC---hHHHHHHHHHHHhC
Confidence            455667788899977665322   112 222222111   11223577889999999999864   99999999999999


Q ss_pred             CCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          423 GISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       423 gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      ||++.++++|+.+|||+|+++|..
T Consensus       343 ~I~i~~i~~s~~~is~vv~~~~~~  366 (392)
T PRK08841        343 GIDVRQCSTEPQSSMLVLDPANVD  366 (392)
T ss_pred             CCCEEEEECCCcEEEEEEeHHHHH
Confidence            999999999999999999988654

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=97.47  E-value=0.00032  Score=80.45  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             CcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc--c----------ceeeEEEEecCeEEEEEEeCCCCCchh
Q 012808          343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS--K----------AVLTSIVLKRNVTMLDIVSTRMLGQYG  410 (456)
Q Consensus       343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~--~----------~~i~~I~~~~nvalIsv~g~~m~~~~g  410 (456)
                      ..+..+-+..+.+++|+|....+.. ... |......+..  .          ..+..+...+++++|+++|.+|.+.+|
T Consensus       336 ~g~~a~if~~la~~~I~Vd~I~sse-~si-s~~i~~~~~~~~~~~~~~l~~~l~~~~~i~~~~~va~ISvVG~gm~~~~g  413 (861)
T PRK08961        336 VGFLADVFTLFKKHGLSVDLISSSE-TNV-TVSLDPSENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSLLH  413 (861)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEcCC-CEE-EEEEccccccchHHHHHHHHHHHhhcCcEEEeCCeEEEEEeCCCcccCcC
Confidence            4566677888899999987765432 111 2222211100  0          013457788999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          411 FLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       411 ~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      +++++|++|++.||++.+..+|+.+|||+|+++|..
T Consensus       414 v~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~  449 (861)
T PRK08961        414 KLGPAWATFGAERVHLISQASNDLNLTFVIDESDAD  449 (861)
T ss_pred             hHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHH
Confidence            999999999999888877789999999999998764

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=97.47  E-value=0.00016  Score=53.74  Aligned_cols=48  Identities=31%  Similarity=0.462  Sum_probs=40.5

Q ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCC-----CEEEEEEcCCCcC
Q 012808          397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLW  446 (456)
Q Consensus       397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe-----~sIsi~V~~~d~~  446 (456)
                      +|+++|  +.+.+|+++++|+.|+++||++++++++.     .+++|++++++..
T Consensus         2 ~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~~~   54 (61)
T cd04891           2 QVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLE   54 (61)
T ss_pred             EEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHHHH
Confidence            577776  67889999999999999999999998643     7799999887653

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09084 aspartate kinase III; Validated

Probab=97.37  E-value=0.00027  Score=75.27  Aligned_cols=100  Identities=11%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCc-------c------ceeeEEEEecCeEEEEEEeCCCCCchh
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-------K------AVLTSIVLKRNVTMLDIVSTRMLGQYG  410 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-------~------~~i~~I~~~~nvalIsv~g~~m~~~~g  410 (456)
                      .+-.+.+..+.+++|++...++.. ....-.|.......       .      ..+..+.+.+|+++|+++|.+|.+.||
T Consensus       321 g~~a~if~~l~~~~I~Vd~I~sse-~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~i~~~~~va~IsvvG~gm~~~~g  399 (448)
T PRK09084        321 GFLAEVFGILARHKISVDLITTSE-VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEVEEGLALVALIGNNLSKACG  399 (448)
T ss_pred             cHHHHHHHHHHHcCCeEEEEeccC-cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCeEEEECCeEEEEEECCCcccCcC
Confidence            344566777888888877665422 11111111111000       0      023578889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcC
Q 012808          411 FLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW  446 (456)
Q Consensus       411 ~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~  446 (456)
                      +++++|++|++.  ||.|++  +|+.+||++|+++|..
T Consensus       400 v~arif~aL~~~--nI~~I~qgsSe~sIS~vV~~~d~~  435 (448)
T PRK09084        400 VAKRVFGVLEPF--NIRMICYGASSHNLCFLVPESDAE  435 (448)
T ss_pred             hHHHHHHHHHhC--CeEEEEEcCCCCcEEEEEcHHHHH
Confidence            999999999874  666665  8999999999988754

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=97.29  E-value=0.00041  Score=53.86  Aligned_cols=51  Identities=22%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~  447 (456)
                      +++|++++  +.+.+|+++++|+.|+++||++++++++     ..+++|+++.++...
T Consensus         1 ~~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~~~   56 (75)
T cd04913           1 QAKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKK   56 (75)
T ss_pred             CeEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHHHH
Confidence            36788865  6788999999999999999999999754     247999998876543

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=97.05  E-value=0.0021  Score=51.07  Aligned_cols=49  Identities=16%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCC
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK  444 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d  444 (456)
                      ..|.+.+.+|.|.+|+.+++|++|+++++++.+..+..++|+..+..+.
T Consensus         2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~   50 (71)
T cd04910           2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSL   50 (71)
T ss_pred             eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCH
Confidence            5679999999999999999999999999999999999999999997664

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=96.99  E-value=0.00025  Score=72.45  Aligned_cols=102  Identities=17%  Similarity=0.319  Sum_probs=71.2

Q ss_pred             CcchHHHHHHHHhCCCCEEEecC--------CCCCCCc--eEEeeccCC---ccceeeEEEEecCeEEEEEEeCCCCCch
Q 012808          343 QVLHPQSMRPAREGDIPVRVKNS--------YNPNAPG--TLIRRSRDM---SKAVLTSIVLKRNVTMLDIVSTRMLGQY  409 (456)
Q Consensus       343 ~vlhp~a~~~a~~~~Ipv~I~n~--------~~p~~~G--T~I~~~~~~---~~~~i~~I~~~~nvalIsv~g~~m~~~~  409 (456)
                      -.+-.+-+....+.+|.|-+..+        .+|..--  -+|..+-+.   .-..+-.+.+.+..++|+++|. |.+..
T Consensus       407 ~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiSLiGn-vq~ss  485 (559)
T KOG0456|consen  407 HGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIISLIGN-VQNSS  485 (559)
T ss_pred             hhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHhhhhh-hhhhh
Confidence            34444555667788887666544        2322110  012111000   0013556777899999999997 99999


Q ss_pred             hHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCc
Q 012808          410 GFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL  445 (456)
Q Consensus       410 g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~  445 (456)
                      |++.++|..|+++||||.||+  .|+++||++|++++.
T Consensus       486 ~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea  523 (559)
T KOG0456|consen  486 GILERMFCVLAENGINVQMISQGASKVNISCIVNEKEA  523 (559)
T ss_pred             HHHHHHHHHHHhcCcceeeeccccccceEEEEEChHHH
Confidence            999999999999999999999  579999999998754

>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]

Probab=96.19  E-value=0.03  Score=59.37  Aligned_cols=121  Identities=17%  Similarity=0.233  Sum_probs=77.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCceEEeccccee--EEeec--------CCCCc-ceeecchHHHHHHHhhccccCCceEEEcC
Q 012808          200 FGECMSTRIFAAYLNKIGVKARQYDAFDIG--FITTD--------DFTNA-DILEATYPAVAKRLHGDWITDLAIPIVTG  268 (456)
Q Consensus       200 ~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~--iit~~--------~~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~G  268 (456)
                      +||.--. ++ ..|+++|-.++..+....-  +++.+        +|+.. ++...+.++++     ++++.|.+|++.-
T Consensus       171 ~~E~n~~-lv-~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~-----~l~~~G~mp~L~s  243 (520)
T KOG2436|consen  171 SLEANLN-LV-INLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIR-----HLLDAGSMPLLRS  243 (520)
T ss_pred             hhhhhhH-HH-HHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhh-----hhhhCCCchhehh
Confidence            3555333 33 3478888877776654211  23333        23321 22233333333     3467899999987


Q ss_pred             CCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHH
Q 012808          269 FLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELA  338 (456)
Q Consensus       269 fig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa  338 (456)
                       .+.+ ..|+++|.+   +|..|..+|.+|+++++++.+|+.=+...+|      ..++.+..+|...+-
T Consensus       244 -la~T-aSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~g~~l~e~g------e~~S~l~l~~e~~~l  302 (520)
T KOG2436|consen  244 -LAAT-ASGQVLNVN---ADEVAGELALALGPDKLILLMDKGRILKENG------EDISSLILQEEDAGL  302 (520)
T ss_pred             -hccc-CccceEEee---HHHHhhHHHhccCcceeEEecccccccccCc------ccccccccchhHhhh
Confidence             6666 489999999   9999999999999999999999733444444      345666666655443

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=93.48  E-value=0.15  Score=38.42  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=24.3

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVA  430 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~Is  430 (456)
                      +.+.||.+++++++|+++||||..+.
T Consensus         7 ~~drpG~l~~v~~~la~~~inI~~~~   32 (66)
T PF01842_consen    7 VPDRPGILADVTEILADHGINIDSIS   32 (66)
T ss_dssp             EETSTTHHHHHHHHHHHTTEEEEEEE
T ss_pred             cCCCCCHHHHHHHHHHHcCCCHHHeE
Confidence            56899999999999999999999985

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=93.36  E-value=0.3  Score=38.09  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEeC---C--CEEEEEEcCCCcC
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVATS---E--VSLSLTLDPSKLW  446 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~IstS---e--~sIsi~V~~~d~~  446 (456)
                      +.+.||.++++++.|+++|+|++++.++   +  ..++|.++..+..
T Consensus         7 ~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~   53 (76)
T cd04888           7 LEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN   53 (76)
T ss_pred             ecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH
Confidence            3467999999999999999999999752   2  5588888877765

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=91.24  E-value=0.23  Score=41.14  Aligned_cols=47  Identities=13%  Similarity=0.295  Sum_probs=37.8

Q ss_pred             CeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC----CCEEEEEEcCC
Q 012808          394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----EVSLSLTLDPS  443 (456)
Q Consensus       394 nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS----e~sIsi~V~~~  443 (456)
                      ..++|+|.|.   +.||+.+.++.+|+++|+||.=|+++    -.+.-+.|+-+
T Consensus         2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~   52 (90)
T COG3830           2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS   52 (90)
T ss_pred             ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence            4578999984   58999999999999999999999854    35566666543

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=90.52  E-value=0.9  Score=34.81  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=34.1

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCc-CcHHHHhhh
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL-WSRELIQQA  454 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~-~~~~l~~~~  454 (456)
                      +.+.||.++++.+.|+++||||+-+-  ..+....+-++.++. .-.+.+++.
T Consensus         8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~   60 (66)
T cd04908           8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEA   60 (66)
T ss_pred             EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHC
Confidence            66899999999999999999997663  222234555544554 335555543

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=90.01  E-value=1  Score=40.79  Aligned_cols=57  Identities=19%  Similarity=0.411  Sum_probs=41.6

Q ss_pred             cCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC---C--CEEEEEEcCCCcC-c-HHHHh
Q 012808          393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS---E--VSLSLTLDPSKLW-S-RELIQ  452 (456)
Q Consensus       393 ~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS---e--~sIsi~V~~~d~~-~-~~l~~  452 (456)
                      ...+-|.+.   +.+.||+++++++.|+++|+||+.|.++   +  .+++|+|+..+.. + .+|++
T Consensus        67 ~r~vtL~i~---l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~  130 (147)
T PRK04435         67 GKIITLSLL---LEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLE  130 (147)
T ss_pred             CcEEEEEEE---EecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHH
Confidence            344455555   4568999999999999999999999752   2  5688888877764 3 44444

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=89.73  E-value=0.93  Score=36.55  Aligned_cols=48  Identities=17%  Similarity=0.162  Sum_probs=35.4

Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEEEeCC------CEEEEEEcCCCcCcHHHHhh
Q 012808          406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQ  453 (456)
Q Consensus       406 ~~~~g~~akif~~L~~~gI~V~~IstSe------~sIsi~V~~~d~~~~~l~~~  453 (456)
                      .+.||+++++...|+..|.||+-++.++      ..+++++..++-.=.++.+|
T Consensus        10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQ   63 (76)
T PRK06737         10 HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQ   63 (76)
T ss_pred             ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHH
Confidence            4799999999999999999999997442      46778876554333444443

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=88.63  E-value=1.2  Score=36.54  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEeCC------CEEEEEEc
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLD  441 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~IstSe------~sIsi~V~  441 (456)
                      ..+.||+++|+-..|.+.|+||+-++.++      ..++++++
T Consensus         9 VeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~   51 (84)
T PRK13562          9 VADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD   51 (84)
T ss_pred             EECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence            34799999999999999999999997443      58889986

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=86.16  E-value=2.2  Score=36.00  Aligned_cols=38  Identities=13%  Similarity=0.224  Sum_probs=31.6

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcC
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDP  442 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~  442 (456)
                      ..+.||+++++...|++.|.||+-++.+      -..+++++.+
T Consensus        15 v~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~   58 (96)
T PRK08178         15 VRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND   58 (96)
T ss_pred             EECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC
Confidence            3479999999999999999999999633      2678888873

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=86.06  E-value=2.9  Score=32.94  Aligned_cols=43  Identities=12%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC----CCEEEEEEcC
Q 012808          397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----EVSLSLTLDP  442 (456)
Q Consensus       397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS----e~sIsi~V~~  442 (456)
                      +|++.|.   +.||+++++.+.|+++|+||.-++++    .....+.++-
T Consensus         1 ~vtv~G~---DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~   47 (75)
T cd04870           1 LITVTGP---DRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI   47 (75)
T ss_pred             CEEEEcC---CCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc
Confidence            3677774   58999999999999999999887532    3455555543

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=85.17  E-value=2.4  Score=29.06  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=30.0

Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcCCC
Q 012808          407 GQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDPSK  444 (456)
Q Consensus       407 ~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~~d  444 (456)
                      +.+|.++++++.|+++++++..+..+      ...+.+.++..+
T Consensus         7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   50 (60)
T cd02116           7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG   50 (60)
T ss_pred             CCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH
Confidence            47899999999999999999998643      245667776654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=84.93  E-value=3  Score=33.61  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=31.5

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEeCC------CEEEEEEc
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLD  441 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~IstSe------~sIsi~V~  441 (456)
                      ..+.||+++++...|+..|.||+-++-.+      ..+++++.
T Consensus        10 v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~   52 (76)
T PRK11152         10 ARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA   52 (76)
T ss_pred             EECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC
Confidence            45799999999999999999999997332      57888885

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=83.78  E-value=2  Score=33.11  Aligned_cols=47  Identities=15%  Similarity=0.327  Sum_probs=34.4

Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEEeC------CCEEEEEEcCCCcCcHHHHhh
Q 012808          407 GQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDPSKLWSRELIQQ  453 (456)
Q Consensus       407 ~~~g~~akif~~L~~~gI~V~~IstS------e~sIsi~V~~~d~~~~~l~~~  453 (456)
                      +.||++.++...|...|+||+-++.+      -..++++++.++-.-..|.+|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Q   53 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQ   53 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHH
Confidence            47999999999999999999998633      277888888755444445444

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=82.89  E-value=2.7  Score=38.63  Aligned_cols=39  Identities=15%  Similarity=0.346  Sum_probs=30.8

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEeC--C----CEEEEEEcCC
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVATS--E----VSLSLTLDPS  443 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~IstS--e----~sIsi~V~~~  443 (456)
                      ..+.||.++++...|+++|+||+-++.+  +    ..+++.++.+
T Consensus         8 ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d   52 (157)
T TIGR00119         8 VENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD   52 (157)
T ss_pred             EcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC
Confidence            4579999999999999999999987522  2    3477777763

acetohydroxyacid synthase is a synonym.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=82.69  E-value=22  Score=33.91  Aligned_cols=46  Identities=20%  Similarity=0.363  Sum_probs=31.6

Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCcHHHHh
Q 012808          406 LGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQ  452 (456)
Q Consensus       406 ~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~~~l~~  452 (456)
                      .+.||+++++-+.|.+++|||-.+.-+     ...+ .++.-++-...++++
T Consensus       156 ~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai-~vl~vD~~v~~~vl~  206 (208)
T TIGR00719       156 NDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL-LTIEIDKNIDDHIKD  206 (208)
T ss_pred             CCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE-EEEEeCCCCCHHHHh
Confidence            468999999999999999999877522     2333 334444444555544

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=82.25  E-value=2.6  Score=31.45  Aligned_cols=26  Identities=15%  Similarity=0.335  Sum_probs=23.1

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEE
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVA  430 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~Is  430 (456)
                      +.+.||.++++++.|+++|+||..+.
T Consensus         6 ~~d~pG~L~~i~~~l~~~~~nI~~i~   31 (65)
T cd04882           6 VPDKPGGLHEILQILSEEGINIEYMY   31 (65)
T ss_pred             eCCCCcHHHHHHHHHHHCCCChhheE
Confidence            56789999999999999999997664

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=82.15  E-value=3  Score=38.51  Aligned_cols=40  Identities=15%  Similarity=0.338  Sum_probs=31.4

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEeC--C----CEEEEEEcCCC
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVATS--E----VSLSLTLDPSK  444 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~IstS--e----~sIsi~V~~~d  444 (456)
                      ..+.||.++++...|+++|+||+-++.+  +    ..+++.++.++
T Consensus         9 veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~   54 (161)
T PRK11895          9 VENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE   54 (161)
T ss_pred             EcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH
Confidence            4579999999999999999999887532  2    34778887543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.67  E-value=11  Score=41.17  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             HHHHHHHHhCCCCEEEecCC-CCCCCceEEee-ccCCccceeeEEEEecC-eEEEEEEeCC-------------CCCchh
Q 012808          347 PQSMRPAREGDIPVRVKNSY-NPNAPGTLIRR-SRDMSKAVLTSIVLKRN-VTMLDIVSTR-------------MLGQYG  410 (456)
Q Consensus       347 p~a~~~a~~~~Ipv~I~n~~-~p~~~GT~I~~-~~~~~~~~i~~I~~~~n-valIsv~g~~-------------m~~~~g  410 (456)
                      +.|...|++.||.+...... .+.+|.|.-.. ..+.....+.+.++-.+ +-++.|.|..             ..+.||
T Consensus       385 ~nA~~iA~e~GI~~~~~~~~~~~~hpNtv~i~l~~~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D~pG  464 (526)
T PRK13581        385 VNAPLLAKERGIEVEESKSEESPDYSNLITVTVTTDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRDRPG  464 (526)
T ss_pred             cCHHHHHHHcCCEEEEEEecCCCCCCCEEEEEEEeCCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCCcCC
Confidence            45888999999998765443 33456653221 11111222444433222 2222233211             146899


Q ss_pred             HHHHHHHHHHhCCCcEEEEEeC----CCEEEEEEcCCCcCcHHHHhh
Q 012808          411 FLAKVFSTFEDLGISVDVVATS----EVSLSLTLDPSKLWSRELIQQ  453 (456)
Q Consensus       411 ~~akif~~L~~~gI~V~~IstS----e~sIsi~V~~~d~~~~~l~~~  453 (456)
                      +++++-+.|++++|||..+..+    ...-.++++-++..+.+++++
T Consensus       465 ~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~  511 (526)
T PRK13581        465 VIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEE  511 (526)
T ss_pred             hhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHH
Confidence            9999999999999999887643    133334455565555666553

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=80.07  E-value=5.8  Score=31.38  Aligned_cols=45  Identities=13%  Similarity=0.285  Sum_probs=31.6

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe----CCCEEEEEEcCC
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPS  443 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist----Se~sIsi~V~~~  443 (456)
                      .+|++.|.   +.||+++.+++.|+++|+||.-+..    ...+..+.|+-.
T Consensus         3 ~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~   51 (76)
T PF13740_consen    3 LVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP   51 (76)
T ss_dssp             EEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred             EEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence            57899985   5899999999999999999887752    244555555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	456
2cdq_A	510	Crystal Structure Of Arabidopsis Thaliana Aspartate		0.0
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		2e-63
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		4e-63
2j0x_A	449	Crystal Structure Of E. Coli Aspartokinase Iii In C		3e-44
3tvi_A	446	Crystal Structure Of Clostridium Acetobutylicum Asp		1e-35
3aaw_A	421	Crystal Structure Of Aspartate Kinase From Coryneba		6e-32
3ab4_A	421	Crystal Structure Of Feedback Inhibition Resistant		9e-32
3l76_A	600	Crystal Structure Of Aspartate Kinase From Synechoc		2e-20
3l76_A	600	Crystal Structure Of Aspartate Kinase From Synechoc		9e-05
3mah_A	157	A Putative C-Terminal Regulatory Domain Of Aspartat		2e-04
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		8e-04

>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase Complexed With Lysine And S-Adenosylmethionine Length = 510

Iteration: 1
 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/391 (82%), Positives = 356/391 (91%), Gaps = 1/391 (0%)
Query: 63  VIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK 122
           V+E KK+E +  +  EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP E PVIVLSAMGK
Sbjct: 10  VLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGK 68
Query: 123 TTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKG 182
           TTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I T+LEELEQLLKG
Sbjct: 69  TTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKG 128
Query: 183 IAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL 242
           IAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IGFITTDDFTN DIL
Sbjct: 129 IAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDIL 188
Query: 243 EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE 302
           EATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDLTATTIGKALGL+E
Sbjct: 189 EATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKE 248
Query: 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRV 362
           IQVWKDVDGVLTCDP I+  A PVPYLTFDEAAELAYFGAQVLHPQSMRPAREG+IPVRV
Sbjct: 249 IQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRV 308
Query: 363 KNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDL 422
           KNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ GFLAKVFS FE+L
Sbjct: 309 KNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEEL 368
Query: 423 GISVDVVATSEVSLSLTLDPSKLWSRELIQQ 453
           GISVDVVATSEVS+SLTLDPSKLWSRELIQQ
Sbjct: 369 GISVDVVATSEVSISLTLDPSKLWSRELIQQ 399

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score =  239 bits (610), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 230/374 (61%), Gaps = 23/374 (6%)
Query: 81  LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCG 138
           +T VMKFGG+S+ S ER+R VA+++     E   +V+  SAM + TN L+   ++A+   
Sbjct: 1   MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD-- 58
Query: 139 VTNISCI-DELSFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELT 190
           V +I+ + D + F+++ H++ ++E           + II + +EELE++L G+A L ELT
Sbjct: 59  VRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELT 118
Query: 191 PRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYPA 248
           P+SRDY++SFGE +S+ I +  +  +G K+   +  + G IT ++F +A +  LE     
Sbjct: 119 PKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE----- 173
Query: 249 VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308
           V +RL    + +  IP+VTGF+G       ITTLGRGGSD +A  IG  L    I++W D
Sbjct: 174 VKERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTD 231
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
           V GV T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E  IP+ VKN++ P
Sbjct: 232 VSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEP 291
Query: 369 NAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428
            + GTLI    +MS +++ +I   +NV +++I    M+G  G  A++F    +  ++V +
Sbjct: 292 ESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVIL 351
Query: 429 VA--TSEVSLSLTL 440
           ++  +SE ++SL +
Sbjct: 352 ISQGSSETNISLVV 365

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score =  238 bits (608), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 141/373 (37%), Positives = 229/373 (61%), Gaps = 23/373 (6%)
Query: 82  TCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCGV 139
           T VMKFGG+S+ S ER+R VA+++     E   +V+  SAM + TN L+   ++A+   V
Sbjct: 1   TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD--V 58
Query: 140 TNISCI-DELSFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELTP 191
            +I+ + D + F+++ H++ ++E           + II + +EELE++L G+A L ELTP
Sbjct: 59  RDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTP 118
Query: 192 RSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYPAV 249
           +SRDY++SFGE +S+ I +  +  +G K+   +  + G IT ++F +A +  LE     V
Sbjct: 119 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE-----V 173
Query: 250 AKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309
            +RL    + +  IP+VTGF+G       ITTLGRGGSD +A  IG  L    I++W DV
Sbjct: 174 KERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDV 231
Query: 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN 369
            GV T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E  IP+ VKN++ P 
Sbjct: 232 SGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPE 291
Query: 370 APGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429
           + GTLI    +MS +++ +I   +NV +++I    M+G  G  A++F    +  ++V ++
Sbjct: 292 SEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILI 351
Query: 430 A--TSEVSLSLTL 440
           +  +SE ++SL +
Sbjct: 352 SQGSSETNISLVV 364

>pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex With Lysine And Aspartate (T-State) Length = 449

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 199/367 (54%), Gaps = 29/367 (7%)
Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
           V KFGG+S+A  + M   A+++LS  N R ++VLSA    TN L+     A++ G+    
Sbjct: 6   VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPGE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYLV 198
             ++L  ++++    ++ L     I     EE+E+LL+ I +L E      +P   D LV
Sbjct: 60  RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD-----ILEATYPAVAKRL 253
           S GE MST +F   L +  V+A+ +D   +   T D F  A+     + E     +  RL
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRL 174
Query: 254 HGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313
           +   +      I  GF+G   +    TTLGRGGSD TA  + +AL    + +W DV G+ 
Sbjct: 175 NEGLV------ITQGFIGSENKG-RTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227
Query: 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
           T DP +   AK +  + F EAAE+A FGA+VLHP ++ PA   DIPV V +S +P A GT
Sbjct: 228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287
Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE 433
           L+    + +  +  ++ L+RN T+L + S  ML   GFLA+VF       ISVD++ TSE
Sbjct: 288 LVCNKTE-NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSE 346
Query: 434 VSLSLTL 440
           VS++LTL
Sbjct: 347 VSVALTL 353

>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate Kinase (Caak): An Important Allosteric Enzyme For Industrial Amino Acids Production Length = 446

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 180/370 (48%), Gaps = 35/370 (9%)
Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK------LLLAGEKAVSC 137
           V KFGGSSLA + + ++V  +I S  N R  I+ SA GK TNK      LL      V  
Sbjct: 6   VTKFGGSSLADSNQFKKVKGIIDSDAN-RKYIIPSAPGKRTNKDYKITDLLYLCNAHVKN 64
Query: 138 GVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
           G   I   D    +   +   V EL ID  I A +LE++++ ++  A        S DY 
Sbjct: 65  G---IPFDDVFKLISQRYTEIVSELNIDXDI-AYYLEKVKKNIENGA--------SSDYA 112
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
            S GE ++  I A YLN     A   DA ++ F    D +     + +Y  + ++     
Sbjct: 113 ASRGEYLNGVILAKYLN-----AEFIDAAEVIFF---DKSGCFDEKKSYEKIKEK----- 159
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
           +      ++ GF G ++    + T  RGGSD+T + I   +     + W DV G L  DP
Sbjct: 160 VLSCNKAVIPGFYGSSFNG-DVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLXADP 218
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI-- 375
            I  + K +  +++ E  EL+Y GA VLH +++ P ++  IP+ +KN+  P+ PGTLI  
Sbjct: 219 RIVENPKTISKISYKELRELSYXGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILS 278
Query: 376 RRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVS 435
              ++++   +T I  K+N T++ I    +  + GF  K+ S  E  G+S +   +   S
Sbjct: 279 DTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEXYGVSFEHXPSGVDS 338
Query: 436 LSLTLDPSKL 445
           +SL ++  KL
Sbjct: 339 VSLVIEDCKL 348

>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score =  135 bits (339), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 174/355 (49%), Gaps = 72/355 (20%)
Query: 84  VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V K+GGSSL SAER+R VAE I++        V+V SAMG TT+                
Sbjct: 5   VQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTD---------------- 48
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP-RSRDYLVSF 200
                                               +LL+  A +  + P R  D L++ 
Sbjct: 49  ------------------------------------ELLELAAAVNPVPPAREMDMLLTA 72
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
           GE +S  + A  +  +G +A+ +     G +TT+   NA I++ T   V + L      +
Sbjct: 73  GERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALD-----E 127
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
             I IV GF G    T  +TTLGRGGSD TA  +  AL     +++ DVDGV T DP I 
Sbjct: 128 GKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIV 187
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD 380
           P+A+ +  L+F+E  ELA  G+++L  +S+  AR  ++P+RV++SY+ N PGTLI  S +
Sbjct: 188 PNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAGSME 246
Query: 381 ---MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429
              + +AVLT +   ++   VT+L I       + G  AKVF    D  I++D+V
Sbjct: 247 DIPVEEAVLTGVATDKSEAKVTVLGISD-----KPGEAAKVFRALADAEINIDMV 296

>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score =  134 bits (338), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 174/355 (49%), Gaps = 72/355 (20%)
Query: 84  VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V K+GGSSL SAER+R VAE I++        V+V SAMG TT+                
Sbjct: 5   VQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTD---------------- 48
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP-RSRDYLVSF 200
                                               +LL+  A +  + P R  D L++ 
Sbjct: 49  ------------------------------------ELLELAAAVNPVPPAREMDMLLTA 72
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
           GE +S  + A  +  +G +A+ +     G +TT+   NA I++ T   V + L      +
Sbjct: 73  GERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALD-----E 127
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
             I IV GF G    T  +TTLGRGGSD TA  +  AL     +++ DVDGV T DP I 
Sbjct: 128 GKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIV 187
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD 380
           P+A+ +  L+F+E  ELA  G+++L  +S+  AR  ++P+RV++SY+ N PGTLI  S +
Sbjct: 188 PNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAGSME 246
Query: 381 ---MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429
              + +AVLT +   ++   VT+L I       + G  AKVF    D  I++D+V
Sbjct: 247 DIPVEEAVLTGVATDKSEAKVTVLGISD-----KPGEAAKVFRALADAEINIDMV 296

>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 134/293 (45%), Gaps = 60/293 (20%)
Query: 84  VMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V KFGG+S+ + ER++ VA+ I          V+V+SAMGK+T+ L+             
Sbjct: 5   VQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLV------------- 51
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
                                            +L Q +      +E+     D L+S G
Sbjct: 52  ---------------------------------DLAQQISPNPCRREM-----DMLLSTG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
           E +S  + +  L +I   A       +G +T  + + A ILE     +   L    +   
Sbjct: 74  EQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVV-- 131
Query: 262 AIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
              +V GF G  +     ITTLGRGGSD +A  +  AL     +++ DV G+LT DP + 
Sbjct: 132 ---VVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLV 188
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
           P A+ +  +T DE  ELA  GA+VLHP+++  AR   IP+ V++S++ + PGT
Sbjct: 189 PEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGT 240

>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 36/53 (67%)
Query: 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLD 441
           I++++ +  + I    M+G+ G  AK+F T  D+G+++++++TSEV +S  +D
Sbjct: 349 IIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVID 401

>pdb|3MAH|A Chain A, A Putative C-Terminal Regulatory Domain Of Aspartate Kinase From Porphyromonas Gingivalis W83 Length = 157

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
           S D  K  + ++  K  +T++ + S+  L  + F  K+F  FE     VD VATSEV +S
Sbjct: 1   SLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFXRKLFEIFEFYQEPVDXVATSEVGVS 60
Query: 438 LTLDPSK 444
           LT+D  K
Sbjct: 61  LTIDNDK 67

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 286 GSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
           G+ L A  IG  L L+  +V    DGV   DP  H  A     LT+D   E+   G +V+
Sbjct: 148 GAALRAIEIGADLLLKATKV----DGVYDKDPKKHSDAVRYDSLTYD---EVIMQGLEVM 200
Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
              +   AR+ D+P+R+   +  + PG L+R
Sbjct: 201 DTAAFALARDSDLPLRI---FGMSEPGVLLR 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	1e-175
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	1e-150
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	1e-148
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	1e-139
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	1e-66
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	5e-62
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	2e-08
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	5e-08
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	2e-07
2ij9_A	219	Uridylate kinase; structural genomics, protein str	2e-07
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	3e-07
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	5e-07
3nwy_A	281	Uridylate kinase; allosterically activated form, A	1e-06
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	2e-06
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	2e-05
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	4e-05
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	4e-05
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	4e-05
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	1e-04

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score =  498 bits (1285), Expect = e-175
 Identities = 321/400 (80%), Positives = 357/400 (89%), Gaps = 1/400 (0%)

Query: 54  VSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERP 113
           +        V+E KK+E +  +  EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP E P
Sbjct: 1   MGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESP 59

Query: 114 VIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHL 173
           VIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I T+L
Sbjct: 60  VIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYL 119

Query: 174 EELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233
           EELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IGFITT
Sbjct: 120 EELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITT 179

Query: 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATT 293
           DDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDLTATT
Sbjct: 180 DDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATT 239

Query: 294 IGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPA 353
           IGKALGL+EIQVWKDVDGVLTCDP I+  A PVPYLTFDEAAELAYFGAQVLHPQSMRPA
Sbjct: 240 IGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPA 299

Query: 354 REGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLA 413
           REG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ GFLA
Sbjct: 300 REGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLA 359

Query: 414 KVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ 453
           KVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ
Sbjct: 360 KVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQ 399

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score =  428 bits (1102), Expect = e-148
 Identities = 132/371 (35%), Positives = 194/371 (52%), Gaps = 19/371 (5%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
           V KFGG+S+A  + M   A+++LS  N   ++VLSA    TN L+   E           
Sbjct: 6   VSKFGGTSVADFDAMNRSADIVLSDAN-VRLVVLSASAGITNLLVALAEGLE-----PGE 59

Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYLV 198
             ++L  ++++    ++ L     I     EE+E+LL+ I +L E      +P   D LV
Sbjct: 60  RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115

Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
           S GE MST +F   L +  V+A+ +D   +   T D F  A+   A    +A       +
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRL 174

Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
            +  + I  GF+G +      TTLGRGGSD TA  + +AL    + +W DV G+ T DP 
Sbjct: 175 NE-GLVITQGFIG-SENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 232

Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
           +   AK +  + F EAAE+A FGA+VLHP ++ PA   DIPV V +S +P A GTL+   
Sbjct: 233 VVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNK 292

Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSL 438
            +       ++ L+RN T+L + S  ML   GFLA+VF       ISVD++ TSEVS++L
Sbjct: 293 TENPPLF-RALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVAL 351

Query: 439 TLDPSKLWSRE 449
           TLD +   S  
Sbjct: 352 TLDTTGSTSTG 362

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score =  407 bits (1047), Expect = e-139
 Identities = 108/367 (29%), Positives = 171/367 (46%), Gaps = 29/367 (7%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG---VT 140
           V KFGGSSLA + + ++V  +I S  N R  I+ SA GK TNK     +    C      
Sbjct: 6   VTKFGGSSLADSNQFKKVKGIIDSDAN-RKYIIPSAPGKRTNKDYKITDLLYLCNAHVKN 64

Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
            I   D    +   +   V EL ID  I       LE++ K I         S DY  S 
Sbjct: 65  GIPFDDVFKLISQRYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASR 115

Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
           GE ++  I A YLN   + A +        I  D  +     + +Y  + +++       
Sbjct: 116 GEYLNGVILAKYLNAEFIDAAE-------VIFFDK-SGCFDEKKSYEKIKEKVLSC---- 163

Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
               ++ GF G +     + T  RGGSD+T + I   +     + W DV G L  DP I 
Sbjct: 164 -NKAVIPGFYG-SSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIV 221

Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR--RS 378
            + K +  +++ E  EL+Y GA VLH +++ P ++  IP+ +KN+  P+ PGTLI     
Sbjct: 222 ENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTH 281

Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSL 438
           ++++   +T I  K+N T++ I    +  + GF  K+ S  E  G+S + + +   S+SL
Sbjct: 282 KEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSL 341

Query: 439 TLDPSKL 445
            ++  KL
Sbjct: 342 VIEDCKL 348

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score =  218 bits (557), Expect = 1e-66
 Identities = 113/355 (31%), Positives = 169/355 (47%), Gaps = 72/355 (20%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V K+GGSSL SAER+R VAE I++        V+V SAMG TT                 
Sbjct: 5   VQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTT----------------- 47

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
                             DEL                    + +   + P    R  D L
Sbjct: 48  ------------------DEL--------------------LELAAAVNPVPPAREMDML 69

Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
           ++ GE +S  + A  +  +G +A+ +     G +TT+   NA I++ T   V + L    
Sbjct: 70  LTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEG- 128

Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
                I IV GF G    T  +TTLGRGGSD TA  +  AL     +++ DVDGV T DP
Sbjct: 129 ----KICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADP 184

Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
            I P+A+ +  L+F+E  ELA  G+++L  +S+  AR  ++P+RV++SY+ N PGTLI  
Sbjct: 185 RIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAG 243

Query: 378 SR---DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 429
           S     + +AVLT +   ++   + ++   +  + G  AKVF    D  I++D+V
Sbjct: 244 SMEDIPVEEAVLTGVATDKSEAKVTVL--GISDKPGEAAKVFRALADAEINIDMV 296

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score =  210 bits (538), Expect = 5e-62
 Identities = 92/362 (25%), Positives = 155/362 (42%), Gaps = 80/362 (22%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
           V KFGG+S+ + ER++ VA+ I          V+V+SAMGK+T                 
Sbjct: 5   VQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKST----------------- 47

Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
                             D L                    + + ++++P    R  D L
Sbjct: 48  ------------------DVL--------------------VDLAQQISPNPCRREMDML 69

Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL-HGD 256
           +S GE +S  + +  L +I   A       +G +T  + + A ILE     +   L  G 
Sbjct: 70  LSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGK 129

Query: 257 WITDLAIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
                 + +V GF G  +     ITTLGRGGSD +A  +  AL     +++ DV G+LT 
Sbjct: 130 ------VVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183

Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
           DP + P A+ +  +T DE  ELA  GA+VLHP+++  AR   IP+ V++S++ + PGT +
Sbjct: 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGTKV 242

Query: 376 RRSRD--------MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
                             +  +    +   + ++  R+  + G  +K+F       + +D
Sbjct: 243 VAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDID 300

Query: 428 VV 429
           ++
Sbjct: 301 LI 302

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 86.9 bits (216), Expect = 2e-20
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
           S D  K  + ++  K  +T++ + S+  L  + F+ K+F  FE     VD+VATSEV +S
Sbjct: 1   SLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVS 60

Query: 438 LTLDPSK 444
           LT+D  K
Sbjct: 61  LTIDNDK 67

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 7e-12
 Identities = 59/387 (15%), Positives = 113/387 (29%), Gaps = 114/387 (29%)

Query: 97  RMREVAELILSFPNERPV--IVLSAM---GKTTNKLLLAGE----KAVSCG--------- 138
           R++   +L  +    RP   +++  +   GKT     +A +      V C          
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLN 188

Query: 139 VTNISCIDE-LSFVKDLHHRTVDEL--GIDRSI-IATHLEELEQLLKGIAMLKELTPRS- 193
           + N +  +  L  ++ L ++         D S  I   +  ++  L+ +   K       
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCL 247

Query: 194 ---RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG---FITTDDFTNADILEA--- 244
               +  V      + + +              +AF++     +TT      D L A   
Sbjct: 248 LVLLN--VQ-----NAKAW--------------NAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 245 TYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKAL--G 299
           T+ ++           L    V   L K +  C    L R     +    + I +++  G
Sbjct: 287 THISLDHHSMT-----LTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPA------ 353
           L     WK V+    CD                   E +     VL P   R        
Sbjct: 341 LATWDNWKHVN----CD-------------KLTTIIESSL---NVLEPAEYRKMFDRLSV 380

Query: 354 -REG-DIPVRV-------KNSYNPN------APGTLIRRSRDMSKAVLTSIVLKRNVTML 398
                 IP  +           +           +L+ +    S   + SI L+  V + 
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 399 DIVS--TRMLGQYGFLAKVFSTFEDLG 423
           +  +    ++  Y       S  +DL 
Sbjct: 441 NEYALHRSIVDHYNIPKTFDS--DDLI 465

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
           +   A  + +A   + + V  +VDGV   DP I+   K +P+LT  +  ++      V  
Sbjct: 119 TAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQA 178

Query: 347 -------PQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
                  P +++      I V V N    N            ++I
Sbjct: 179 GTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
           +D  AT     +G   I     VDG+   DPN    AK +  L++++A        +V+ 
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMD 200

Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
             ++  A++  +P+ V    N    G L++
Sbjct: 201 DTAISLAKDNKLPIVV---CNMFKKGNLLQ 227

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 11/129 (8%)

Query: 263 IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI--H 320
             + + F          + +    +D  A  +  A G   + + ++VDG+ T DPN    
Sbjct: 146 AVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDR 205

Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------P 371
             A+ +P  +  + A+             +         V+V N   P            
Sbjct: 206 GQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHV 265

Query: 372 GTLIRRSRD 380
           GTLIR    
Sbjct: 266 GTLIRTGVR 274

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL------AYF 340
           +D TA  + + +         +VDGV + DP     A     L+  +  E+         
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175

Query: 341 GAQVLHPQSMRPAREGDIPVRVKNSYNPN--------APGTLI 375
              V+   + +      I   V      N        A GT+I
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVI 218

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 35/195 (17%)

Query: 195 DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLH 254
             L S     +  +    L K G+            ++  +              A    
Sbjct: 100 AQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAE------------VNAVVFS 147

Query: 255 GDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
           G     L +      +   +RT           D     + +  G +++   KD DG+ T
Sbjct: 148 GMPPYKLWMRPAAEGVIPPYRT-----------DAGCFLLAEQFGCKQMIFVKDEDGLYT 196

Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNPNA-- 370
            +P     A  +P ++ DE          +L    +   +  +    V+V N   P    
Sbjct: 197 ANPKTSKDATFIPRISVDEMKAKG-LHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLT 255

Query: 371 -------PGTLIRRS 378
                   GT+I  S
Sbjct: 256 RALAGEHVGTIITAS 270

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 15/84 (17%)

Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQ------VLHPQSMRPAREGDIPV 360
            +VDGV T DP   P AK +  +  +E  E+   G +      V+ P + +      I  
Sbjct: 159 TNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKT 218

Query: 361 RVKNSYNPNA---------PGTLI 375
            V    +             GT I
Sbjct: 219 IVIGKEDAKDLFRVIKGDHNGTTI 242

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 47/234 (20%)

Query: 160 DELGIDRSIIATHLEELEQLLK----------------GIAMLKELTPRSR-DYLVSFGE 202
            ++G+D  ++A    ++  +++                G  + +    R+R DY+   G 
Sbjct: 65  GQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGT 124

Query: 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLA 262
            M++     +L K G+  R   A  +            + E   P  A R          
Sbjct: 125 VMNSLALQDFLEKEGIVTRVQTAITM----------GQVAEPYLPLRAVRHLEK------ 168

Query: 263 IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPH 322
                   G+     A   L    +D TA      +G   + + K VDGV   DP ++P 
Sbjct: 169 --------GRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPE 220

Query: 323 AKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
           A+ +  ++  E  +    G +V    +     +  +P+ V   +N    G + R
Sbjct: 221 AELLTAVSHREVLDR---GLRVADATAFSLCMDNGMPILV---FNLLTDGNIAR 268

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
           +D  A      +G   +     VDGV   DP  H  A     LT+DE       G +V+ 
Sbjct: 145 TDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMD 201

Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
             +   AR+ D+P+R+   +  + PG L+R
Sbjct: 202 TAAFALARDSDLPLRI---FGMSEPGVLLR 228

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
           +D  A           I + K+ VDGV   DP I+P+A+   ++TF+ A        +V+
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVM 215

Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
              ++   +E +I + V   +N + P  ++ 
Sbjct: 216 DATALALCQENNINLLV---FNIDKPNAIVD 243

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
           +D TA      +    I + K+ VDGV   DP    +A     LT  E  +    G +++
Sbjct: 143 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIM 199

Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
              +   + + DI + V   +N N  G + R
Sbjct: 200 DATASTLSMDNDIDLVV---FNMNEAGNIQR 227

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
           +D TA   G  +    +     VDGV  CDP  +P AK    L++ E  +      +V+ 
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMD 200

Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
             +   AR+  +P+RV   +N   PG L +
Sbjct: 201 LSAFTLARDHGMPIRV---FNMGKPGALRQ 227

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
           +D  A   G  +    +    +VDGV T DP   P A     +TFDEA        +V+ 
Sbjct: 143 TDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMD 199

Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
             +    RE  + + V   +     G+L R
Sbjct: 200 ATAFALCRERKLNIVV---FGIAKEGSLKR 226

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
           +D  +      +    I V K  VDGV T DP  +  AK    L +++         QV+
Sbjct: 149 TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVM 205

Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
              ++  AR+ ++P  V   +N + PG + R
Sbjct: 206 DQAALLLARDYNLPAHV---FNFDEPGVMRR 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	100.0
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	100.0
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	100.0
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	100.0
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	100.0
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	100.0
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	99.97
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	99.97
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	99.97
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	99.97
1gs5_A	258	Acetylglutamate kinase; carbamate kinase, amino ac	99.96
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	99.96
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	99.96
2ap9_A	299	NAG kinase, acetylglutamate kinase, AGK; structura	99.96
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	99.96
3nwy_A	281	Uridylate kinase; allosterically activated form, A	99.96
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	99.95
2ij9_A	219	Uridylate kinase; structural genomics, protein str	99.95
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	99.95
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	99.95
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	99.95
2rd5_A	298	Acetylglutamate kinase-like protein; protein-prote	99.94
2bty_A	282	Acetylglutamate kinase; N-acetyl-L-glutamate kinas	99.94
2egx_A	269	Putative acetylglutamate kinase; struc genomics, N	99.94
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	99.94
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	99.93
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	99.93
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	99.93
2v5h_A	321	Acetylglutamate kinase; amino-acid biosynthesis, t	99.93
2buf_A	300	Acetylglutamate kinase; acetyglutamate kinase, ADP	99.92
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	99.92
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	99.91
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	99.9
3zzh_A	307	Acetylglutamate kinase; transferase, arginine bios	99.86
3d2m_A	456	Putative acetylglutamate synthase; protein-COA-Glu	99.85
2e9y_A	316	Carbamate kinase; transferase, structural genomics	99.84
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	99.83
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	99.83
4ab7_A	464	Protein Arg5,6, mitochondrial; transferase, argini	99.82
3s6g_A	460	N-acetylglutamate kinase / N-acetylglutamate SYNT;	99.81
3s6k_A	467	Acetylglutamate kinase; synthase, transferase; 2.8	99.74
4axs_A	332	Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm	99.6
3kzf_A	317	Carbamate kinase; arginine dihydrolase pathway, gi	99.59
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	99.11
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	98.99
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	98.99
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	98.79
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	98.78
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	98.73
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	98.72
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	98.58
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	98.55
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	98.5
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	98.46
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	98.42
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	98.35
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	98.34
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	98.32
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	98.28
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	98.13
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	97.77
2f06_A	144	Conserved hypothetical protein; structural genomic	97.31
2f06_A	144	Conserved hypothetical protein; structural genomic	92.62
1zhv_A	134	Hypothetical protein ATU0741; NESG, ATR8, structur	82.58

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=100.00  E-value=1.6e-77  Score=636.63  Aligned_cols=386  Identities=81%  Similarity=1.195  Sum_probs=338.4

Q ss_pred             cceeeeccccccccccccCCCcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcC
Q 012808           59 ARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG  138 (456)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~  138 (456)
                      ...+++++++.|+ .+..+++..|+|+|||||||+|++++++|+++|.+..+++++||||||||+||.|+++++.+..++
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~V~KFGGTSva~~e~i~~va~iI~~~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~   84 (510)
T 2cdq_A            6 IVRAVLEEKKTEA-ITEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG   84 (510)
T ss_dssp             --------------------CCCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcccchhh-hhccCCCCCeEEEEECCcccCCHHHHHHHHHHHHhccCCCEEEEEcCCCCCchHHHHHHHHHhhcc
Confidence            3456787764443 345567778999999999999999999999999765556889999999999999999988765544


Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Q 012808          139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGV  218 (456)
Q Consensus       139 ~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi  218 (456)
                      ....++.+.++.++++|..++++|+.+...|+.++++|++++.++....+.+++.+|+++++||++|+.+++++|+++|+
T Consensus        85 ~~~~~~~~~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi  164 (510)
T 2cdq_A           85 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGV  164 (510)
T ss_dssp             TTTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            44445566899999999999999998888899999999999999998999999999999999999999999999999999


Q ss_pred             ceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCC-CCceeeccCCCChhHHHHHHHH
Q 012808          219 KARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR-TCAITTLGRGGSDLTATTIGKA  297 (456)
Q Consensus       219 ~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~-~G~vttlgRGGSD~tAa~lA~~  297 (456)
                      ++.++++++++++|+++|+++++.+.++.++.+.+...|++.+.|||++||+|.+ + +|.++|+||||||++|+++|.+
T Consensus       165 ~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~-~~~g~ittlgrGgsD~tAa~lA~~  243 (510)
T 2cdq_A          165 KARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG-WKTGAVTTLGRGGSDLTATTIGKA  243 (510)
T ss_dssp             CEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE-TTTCCEEECCTTHHHHHHHHHHHH
T ss_pred             CEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC-CCCCceEEeCCCChHHHHHHHHHH
Confidence            9999999999999999999888876666666666665455788999999999998 6 8999999999999999999999


Q ss_pred             cCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEee
Q 012808          298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR  377 (456)
Q Consensus       298 L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~  377 (456)
                      |+|+++++||||||||++||+++|+|++|++|||+|+.||+++|+++|||+|++||+++|||++|+|+++|+.+||+|.+
T Consensus       244 l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~  323 (510)
T 2cdq_A          244 LGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITK  323 (510)
T ss_dssp             HTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEES
T ss_pred             cCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             ccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       378 ~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      ..++....|++|+.++|+++|+|.+.+|.+.+||++++|+.|+++||||+||++|+.+|||+|+.+++.
T Consensus       324 ~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~  392 (510)
T 2cdq_A          324 TRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLW  392 (510)
T ss_dssp             CCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGS
T ss_pred             cccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhh
Confidence            654344579999999999999999999999999999999999999999999999999999999987753

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=100.00  E-value=2e-70  Score=575.29  Aligned_cols=352  Identities=36%  Similarity=0.532  Sum_probs=310.0

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      .|+|+|||||||+|++++++|+++|.+.. ++++||||||||+||.|+++++.+.     ..++.+.++.++++|..+++
T Consensus         3 ~~~V~KFGGTSv~~~e~i~~va~ii~~~~-~~~vVVvSA~g~~Td~L~~~~~~~~-----~~~~~~~i~~i~~~~~~i~~   76 (449)
T 2j0w_A            3 EIVVSKFGGTSVADFDAMNRSADIVLSDA-NVRLVVLSASAGITNLLVALAEGLE-----PGERFEKLDAIRNIQFAILE   76 (449)
T ss_dssp             CCEEEEECSGGGSSHHHHHHHHHHHTSCT-TEEEEEECCCTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHHT
T ss_pred             ccEEEEECCccCCCHHHHHHHHHHHHhcC-CCEEEEeCCCCchHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999997643 4789999999999999999775431     12345568889999999999


Q ss_pred             HhCCCH---HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808          161 ELGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT  237 (456)
Q Consensus       161 ~l~~~~---~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~  237 (456)
                      +|..+.   +.|+..+++| +.+.++....+ +++.+|+++++||++|+.+++.+|+++|+++.+++++++ ++|+++|+
T Consensus        77 ~l~~~~~~~~~i~~~~~~l-~~l~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~~  153 (449)
T 2j0w_A           77 RLRYPNVIREEIERLLENI-TVLAEAAALAT-SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFG  153 (449)
T ss_dssp             TSSSTHHHHHHHHHHHHHH-HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTT
T ss_pred             HhcccHHHHHHHHHHHHHH-HHHhhhhccCc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCCC
Confidence            998764   3577888888 55677766555 599999999999999999999999999999999999999 88999999


Q ss_pred             Ccceeecch-HHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808          238 NADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD  316 (456)
Q Consensus       238 ~a~i~~~~~-~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD  316 (456)
                      ++++..... .+..+.+ ..+++. .|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||++|
T Consensus       154 ~~~~~~~~~~~~~~~~l-~~l~~~-~IpVv~Gf~g~~-~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~D  230 (449)
T 2j0w_A          154 RAEPDIAALAELAALQL-LPRLNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD  230 (449)
T ss_dssp             SCCBCHHHHHHHHHHHT-HHHHHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSC
T ss_pred             CccccHhHhHHHHHHHH-HHHhcC-CEEEEeCCeeeC-CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCC
Confidence            887754322 2222222 223333 499999999998 589999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccceeeEEEEecCeE
Q 012808          317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVT  396 (456)
Q Consensus       317 P~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~i~~I~~~~nva  396 (456)
                      ||++|+|++|+++||+|+.+|+++|+|+|||+|+++|+++|||++|+|+++|+.+||+|.+... ....|++|+.++|++
T Consensus       231 Pr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~-~~~~v~gIa~~~~~~  309 (449)
T 2j0w_A          231 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE-NPPLFRALALRRNQT  309 (449)
T ss_dssp             TTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS-SCCSEEEEEEEEEEE
T ss_pred             CCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc-cccccccceeeCCEE
Confidence            9999999999999999999999999999999999999999999999999999999999987642 345699999999999


Q ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808          397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL  445 (456)
Q Consensus       397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~  445 (456)
                      +|+|.+.+|.+.+||++++|++|+++||+|+||++|+.+|||+|++++.
T Consensus       310 ~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss~~sis~~v~~~~~  358 (449)
T 2j0w_A          310 LLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGS  358 (449)
T ss_dssp             EEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCC
T ss_pred             EEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeCCCeEEEEEecccc
Confidence            9999999999999999999999999999999999999999999998764

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.7e-70  Score=574.16  Aligned_cols=339  Identities=31%  Similarity=0.475  Sum_probs=289.3

Q ss_pred             cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------CchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808           80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVK  152 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~-------vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~  152 (456)
                      .+|+|+|||||||+|+++|++|+++|.+. +++++|||||||+       +||.|+++++.+..+    .++.+.++.++
T Consensus         2 ~~m~V~KFGGtSva~~e~i~~Va~iI~~~-~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~----~~~~~~~~~i~   76 (446)
T 3tvi_A            2 LKIVVTKFGGSSLADSNQFKKVKGIIDSD-ANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNG----IPFDDVFKLIS   76 (446)
T ss_dssp             --CEEEEECGGGGSSHHHHHHHHHHHTTC-TTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTT----CCCHHHHHHHH
T ss_pred             CccEEEEeCccccCCHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcC----ccHHHHHHHHH
Confidence            37899999999999999999999999874 4678999999995       999999998876543    34678899999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808          153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT  232 (456)
Q Consensus       153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit  232 (456)
                      ++|..++++|+.+...    .++++++++.+.     ..+.+|+|+|+||++|+.||+++|     ++.+++++++++.+
T Consensus        77 ~~~~~i~~~L~~~~~~----~~~l~~~~~~l~-----~~~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~  142 (446)
T 3tvi_A           77 QRYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFD  142 (446)
T ss_dssp             HHHHHHHHHHTCCSCH----HHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBC
T ss_pred             HHHHHHHHHhcccHHH----HHHHHHHHHHHh-----cCccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeC
Confidence            9999999999876543    233333333321     126789999999999999999996     58899999985544


Q ss_pred             ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                      +   +++.+.+.++..+.+     +++.+.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++|||||||
T Consensus       143 ~---~~~~~~~~~~~~l~~-----~l~~~~v~Vv~Gf~g~~-~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGv  213 (446)
T 3tvi_A          143 K---SGCFDEKKSYEKIKE-----KVLSCNKAVIPGFYGSS-FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGF  213 (446)
T ss_dssp             C-----CBCHHHHHHHHHH-----HTTTCSSEECCCSEEEC-TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             C---CCceehHhhHHHHHH-----HHhcCCeEEeeCceecC-CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCcc
Confidence            4   445444444444433     35678999999999998 58999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCccc--eeeEEE
Q 012808          313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA--VLTSIV  390 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~--~i~~I~  390 (456)
                      ||+||+++|+|++|+++||+|+.||+++|+++|||+|++||+++|||++|+|+++|+.+||+|.+..+..+.  .|++|+
T Consensus       214 yt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa  293 (446)
T 3tvi_A          214 LMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIA  293 (446)
T ss_dssp             BSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEE
T ss_pred             CCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999987644333  799999


Q ss_pred             EecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       391 ~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      .++|+++|+|.+.+|.+.|||++++|+.|+++||+|+||++++.+|+|+|+++++.
T Consensus       294 ~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~~~is~~V~~~d~~  349 (446)
T 3tvi_A          294 GKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSLVIEDCKLD  349 (446)
T ss_dssp             EEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEETTEEEEEEEHHHHT
T ss_pred             ecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCCCEEEEEEecchHH
Confidence            99999999999999999999999999999999999999999999999999988764

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=100.00  E-value=3.6e-59  Score=505.52  Aligned_cols=307  Identities=30%  Similarity=0.450  Sum_probs=264.5

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      +++|+|||||||+|++++++++++|...  .+.+++||+||||++||.|++++...                        
T Consensus         2 ~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~------------------------   57 (600)
T 3l76_A            2 ALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQI------------------------   57 (600)
T ss_dssp             CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHH------------------------
T ss_pred             ceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhh------------------------
Confidence            4799999999999999999999999864  24578999999999999998754311                        


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                          .                       ...+++.+|+++++||++|+.+++.+|+++|+++++++++++++++++.+++
T Consensus        58 ----~-----------------------~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~  110 (600)
T 3l76_A           58 ----S-----------------------PNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSR  110 (600)
T ss_dssp             ----C-----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-----
T ss_pred             ----c-----------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCC
Confidence                0                       1235678899999999999999999999999999999999998999888888


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCC--ceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC--AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD  316 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G--~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD  316 (456)
                      +++...++..+.+.     ++.+.|||++||+|.+ ++|  .++||||||||++|+++|.+|+|++++|||||||||++|
T Consensus       111 ~~~~~~~~~~i~~l-----l~~g~IpVv~Gf~g~~-~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~d  184 (600)
T 3l76_A          111 ARILEIRPDRLEHH-----LREGKVVVVAGFQGIS-SVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTD  184 (600)
T ss_dssp             --CCEEEECCHHHH-----HTTTCEEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSC
T ss_pred             ceeccccHHHHHHH-----HhCCCEEEEECCeecC-CCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCC
Confidence            87766555444432     4678999999999998 589  999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC--------CccceeeE
Q 012808          317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--------MSKAVLTS  388 (456)
Q Consensus       317 P~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--------~~~~~i~~  388 (456)
                      |+++|+|++|+++||+|+.+|+++|+++|||+|+++|+++|||++|+|++++ .+||+|.+...        +....|++
T Consensus       185 Pr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~g  263 (600)
T 3l76_A          185 PRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVDG  263 (600)
T ss_dssp             TTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCCE
T ss_pred             CCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcceE
Confidence            9999999999999999999999999999999999999999999999999985 79999987653        23457999


Q ss_pred             EEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCC-----CEEEEEEcCCCcCc
Q 012808          389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLWS  447 (456)
Q Consensus       389 I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe-----~sIsi~V~~~d~~~  447 (456)
                      |++++|+++|++.  +|.+.+|+++++|+.|+++||+|+||++|+     .+|+|+|+.+++..
T Consensus       264 i~~~~~~~~i~i~--~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~  325 (600)
T 3l76_A          264 VEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNT  325 (600)
T ss_dssp             EEEECCCEEEEEE--EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHH
T ss_pred             EEeeCCEEEEEEe--CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHH
Confidence            9999999999998  689999999999999999999999999876     68999999988654

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=100.00  E-value=1.1e-57  Score=475.67  Aligned_cols=312  Identities=36%  Similarity=0.525  Sum_probs=243.8

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .++|+|||||||.++++++++++.|...  .+.++|||+||+|++||.|++.....                        
T Consensus         2 ~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~------------------------   57 (421)
T 3ab4_A            2 ALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAV------------------------   57 (421)
T ss_dssp             CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHH------------------------
T ss_pred             CeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhh------------------------
Confidence            4799999999999999999999999764  34578899999999999998743210                        


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                                                 ....+++.+|.+++.||.+|+.+++++|+++|+++.++++.++++++++.|++
T Consensus        58 ---------------------------~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~  110 (421)
T 3ab4_A           58 ---------------------------NPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGN  110 (421)
T ss_dssp             ---------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC------------
T ss_pred             ---------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCC
Confidence                                       01235788899999999999999999999999999999999998899888888


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCC-CceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCC
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT-CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP  317 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~-G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP  317 (456)
                      +++...+...+.+     +++.+.|||++||+|.+ ++ |+++|+||||||++|+++|.+|+|++++|||||||||++||
T Consensus       111 ~~v~~~~~~~i~~-----~l~~g~ipVv~g~~g~~-~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dP  184 (421)
T 3ab4_A          111 ARIVDVTPGRVRE-----ALDEGKICIVAGFQGVN-KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADP  184 (421)
T ss_dssp             -----CCHHHHHH-----HHHTTCEEEC-------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCT
T ss_pred             eeechhhHHHHHH-----HHhCCCEEEEeCCcCcC-CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCC
Confidence            8776666555543     24678999999999998 58 99999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeec-cC--CccceeeEEEEecC
Q 012808          318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS-RD--MSKAVLTSIVLKRN  394 (456)
Q Consensus       318 ~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~-~~--~~~~~i~~I~~~~n  394 (456)
                      +++|++++|++|||+|+.+|+++|++++||+|+++|.++|||++|+|+++| .+||+|.++ ..  +....|++|+.++|
T Consensus       185 r~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~~  263 (421)
T 3ab4_A          185 RIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDKS  263 (421)
T ss_dssp             TTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEECS
T ss_pred             CCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeCC
Confidence            999999999999999999999999999999999999999999999999999 799999876 32  23446999999999


Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCC-----CEEEEEEcCCCcCc-HHHHh
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSE-----VSLSLTLDPSKLWS-RELIQ  452 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe-----~sIsi~V~~~d~~~-~~l~~  452 (456)
                      +++|+|.+  |.+.||+++++|+.|+++||||+||+  +|+     .+|+|+|+.++... .++++
T Consensus       264 ~~~i~v~~--~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~  327 (421)
T 3ab4_A          264 EAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILK  327 (421)
T ss_dssp             EEEEEEEE--EESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHH
T ss_pred             EEEEEEec--cCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHH
Confidence            99999997  78899999999999999999999996  453     68999999887643 44444

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*

Probab=99.97  E-value=8.3e-31  Score=251.00  Aligned_cols=205  Identities=18%  Similarity=0.222  Sum_probs=159.2

Q ss_pred             ceEEEEeCccccC--CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLA--SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH  156 (456)
Q Consensus        81 ~~~V~KFGGsSv~--s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~  156 (456)
                      +++|+||||+++.  +++.++++++.|....  +.++|+|+|| |.+++.+++                           
T Consensus         1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~gg-G~~~~~~~~---------------------------   52 (226)
T 2j4j_A            1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGG-GSTARRYIK---------------------------   52 (226)
T ss_dssp             CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHH---------------------------
T ss_pred             CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECc-chHhchhHH---------------------------
Confidence            4689999999999  8999999999997642  3455666665 555554432                           


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC
Q 012808          157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF  236 (456)
Q Consensus       157 ~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~  236 (456)
                       ++++++.                         ++...|.+.++|+.+++.|++.+|+++|+++   +            
T Consensus        53 -~~~~~g~-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~------------   91 (226)
T 2j4j_A           53 -LAREIGI-------------------------GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V------------   91 (226)
T ss_dssp             -HHHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C------------
T ss_pred             -HHHHhCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C------------
Confidence             2233433                         2345677888899999999999999999854   1            


Q ss_pred             CCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808          237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD  316 (456)
Q Consensus       237 ~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD  316 (456)
                            ..++..+.+     +++.+.|||++|  | . +        .+++|++|+.+|.+|+|++++|||||||||++|
T Consensus        92 ------~~~~~~i~~-----ll~~g~ipVi~g--g-~-~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~d  148 (226)
T 2j4j_A           92 ------PQSLEEFIQ-----DWSHGKVVVTGG--F-Q-P--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKD  148 (226)
T ss_dssp             ------CSSHHHHHH-----HHTTSSBEEECC--C-S-T--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSC
T ss_pred             ------cCCHHHHHH-----HHHCCCEEEEcC--C-C-C--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCC
Confidence                  012333332     357889999998  3 2 1        345999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCHHHHHHHHHc-CCC------cchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEee
Q 012808          317 PNIHPHAKPVPYLTFDEAAELAYF-GAQ------VLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR  377 (456)
Q Consensus       317 P~~v~~Ak~i~~ls~~Ea~eLa~~-Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~  377 (456)
                      |+++|++++|++++|+|+.+++.. |++      ++|++++.+|.++|+|++|.|+++|+         ..||+|.+
T Consensus       149 P~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~  225 (226)
T 2j4j_A          149 PRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP  225 (226)
T ss_dssp             TTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred             CCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence            999999999999999999999644 666      89999999999999999999987764         46898864

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}

Probab=99.97  E-value=5e-30  Score=250.21  Aligned_cols=216  Identities=25%  Similarity=0.344  Sum_probs=164.0

Q ss_pred             cceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      ..++|+||||+++.+       ++.++++++.|....  +.++|+|+|| |...+.+.                      
T Consensus        12 ~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg-G~~~~~~~----------------------   68 (255)
T 2jjx_A           12 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-GNIFRGHL----------------------   68 (255)
T ss_dssp             CSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCHHH----------------------
T ss_pred             CCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc-hHHHhhhH----------------------
Confidence            367999999999995       789999999997642  3456777776 65544321                      


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHH-cCCceEEeccccee
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNK-IGVKARQYDAFDIG  229 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~-~Gi~a~~ld~~~~~  229 (456)
                              ++.++++..                         ..+.+..++..+++.||+.+|++ .|+++.++++.+.+
T Consensus        69 --------~~~~g~~~~-------------------------~~~~~~~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~  115 (255)
T 2jjx_A           69 --------AEEWGIDRV-------------------------EADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFN  115 (255)
T ss_dssp             --------HHHTTCCHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEESSCCC
T ss_pred             --------HHHcCCCCC-------------------------ChHHHhHHHHHHHHHHHHHHHHhhcCCceEEecHHHcC
Confidence                    112333211                         01112223347899989999999 99999999988764


Q ss_pred             EEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEee-c
Q 012808          230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-D  308 (456)
Q Consensus       230 iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~T-D  308 (456)
                      ++++         ......+    . .+++.|.|||++|  | + .++.++      +|++|+.+|.+|+|++++||| |
T Consensus       116 ~v~~---------~~~~~~~----~-~lL~~g~IpVi~g--g-~-g~~~vt------tD~~Aa~lA~~l~Ad~liilT~D  171 (255)
T 2jjx_A          116 AVAE---------PYIRLRA----V-HHLDNGYIVIFGG--G-N-GQPFVT------TDYPSVQRAIEMNSDAILVAKQG  171 (255)
T ss_dssp             SSSE---------ECCHHHH----H-HHHHTTCEEEEES--T-T-SCSSCC------SHHHHHHHHHHHTCSEEEEEESS
T ss_pred             cccC---------cccHHHH----H-HHHhCCcEEEEeC--C-C-CCCccc------hHHHHHHHHHhcCCCEEEEEeCC
Confidence            3322         1122222    2 2457899999997  3 2 133333      699999999999999999999 9


Q ss_pred             CCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEeec
Q 012808          309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS  378 (456)
Q Consensus       309 V~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~  378 (456)
                      |||||++||+++|++++|++|+|+|+.++   |.++|||.|+++++++|+|++|.|+++|+         ..||+|.++
T Consensus       172 VdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~  247 (255)
T 2jjx_A          172 VDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD  247 (255)
T ss_dssp             CCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred             cCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence            99999999999999999999999988775   89999999999999999999999999984         689999874

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3

Probab=99.97  E-value=3.7e-30  Score=248.29  Aligned_cols=214  Identities=21%  Similarity=0.293  Sum_probs=163.7

Q ss_pred             cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        80 ~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      ..++|+||||+++.       +.+.++++++.|....  +.++|+|+|+ |...+..                       
T Consensus         7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~Gg-G~~~~g~-----------------------   62 (239)
T 1ybd_A            7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGG-GNIFRGV-----------------------   62 (239)
T ss_dssp             CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHH-----------------------
T ss_pred             CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-cHHHhch-----------------------
Confidence            36799999999999       4689999999998653  3355556654 3221110                       


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                          +   ++.++.+                         ++..|.+.++|+++|+.++..+|.+.|+++.++++.+.+.
T Consensus        63 ----~---~~~~~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~  110 (239)
T 1ybd_A           63 ----S---AQAGSMD-------------------------RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQ  110 (239)
T ss_dssp             ----H---HHHTTSC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSS
T ss_pred             ----h---HHHcCCC-------------------------CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccc
Confidence                0   2233332                         2334567778999999999999999999999998876533


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      +.. +|.        ..+    .. .+++.|.|||++||.|.          .++++|++|+.+|.+|+|++++||||||
T Consensus       111 ~~~-~~~--------~~~----~~-~ll~~g~ipVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~liilTdVd  166 (239)
T 1ybd_A          111 IAE-TYA--------RPK----AI-QYLEEGKVVIFAAGTGN----------PFFTTDTAAALRGAEMNCDVMLKATNVD  166 (239)
T ss_dssp             SCE-ECC--------HHH----HH-HHHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             ccc-chh--------HHH----HH-HHHhCCcEEEEECCccC----------CCCCcHHHHHHHHHhcCCCEEEEeeCCC
Confidence            221 111        111    12 23578999999986542          1356999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      |||++||+++|+|++|++++|+|+.++   |+++|||+++++|.++|+|++|.|+++|+         ..||+|.
T Consensus       167 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~  238 (239)
T 1ybd_A          167 GVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  238 (239)
T ss_dssp             SCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             ccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEc
Confidence            999999999999999999999998874   88999999999999999999999998874         4688875

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*

Probab=99.97  E-value=9.1e-30  Score=247.13  Aligned_cols=216  Identities=21%  Similarity=0.278  Sum_probs=159.2

Q ss_pred             cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        80 ~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      ..++|+||||+++.       +.+.++++++.|....  +.++|+|+|+ |.+.+.+.                      
T Consensus         8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGg-G~~~~~~~----------------------   64 (247)
T 2a1f_A            8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGG-GNLFRGAK----------------------   64 (247)
T ss_dssp             CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCCHH----------------------
T ss_pred             ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ChHhcchh----------------------
Confidence            46799999999999       5689999999998643  2344555554 55543221                      


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                              ++.++.                         +++..|.+.++|+++|+.++..+|.+.|+++.++++.+.+.
T Consensus        65 --------~~~~g~-------------------------~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~  111 (247)
T 2a1f_A           65 --------LAKAGM-------------------------NRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNG  111 (247)
T ss_dssp             --------HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred             --------HHHcCC-------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccc
Confidence                    112332                         23344667788999999999999999999999998876532


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      +.+ .|        ...++     ..+++.+.|||++|+.|      .    .++++|++|+.+|.+|+|++++||||||
T Consensus       112 ~~~-~~--------~~~~~-----~~ll~~g~ipVi~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~liilTDVd  167 (247)
T 2a1f_A          112 ICD-TY--------NWSEA-----IKMLREKRVVIFSAGTG------N----PFFTTDSTACLRGIEIEADVVLKATKVD  167 (247)
T ss_dssp             TSE-EC--------CHHHH-----HHHHHTTCEEEEESTTS------C----SSCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             ccc-hh--------hHHHH-----HHHHhCCCEEEEeCCcC------C----CCCCcHHHHHHHHHhCCCCEEEEEeCCC
Confidence            211 11        11222     12457899999998432      2    2356999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEeec
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS  378 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~  378 (456)
                      |||++||+++|++++|++++|+|+.++   |+++|||+++.+|.++|+|++|.|+++|+         ..||+|...
T Consensus       168 Gvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~  241 (247)
T 2a1f_A          168 GVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG  241 (247)
T ss_dssp             SCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred             cccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence            999999999999999999999999874   88999999999999999999999998763         578998653

>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*

Probab=99.96  E-value=1.7e-29  Score=246.65  Aligned_cols=232  Identities=17%  Similarity=0.266  Sum_probs=175.1

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      ++|+||||+++.+++.++++++.|...  ...+++||||++|+.||.|++.....  ..+                    
T Consensus         4 ~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~--~~~--------------------   61 (258)
T 1gs5_A            4 PLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLP--VKK--------------------   61 (258)
T ss_dssp             CEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCC--CCE--------------------
T ss_pred             cEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCC--cce--------------------
Confidence            589999999999999999999999753  23467999999999999998743210  000                    


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC-
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT-  237 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~-  237 (456)
                                          .++++.   .+....+.+ .++++.+|+.|++ .|+++|+++..+++.+.++++..+.+ 
T Consensus        62 --------------------~~glr~---t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~~~  117 (258)
T 1gs5_A           62 --------------------KNGLRV---TPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQLDE  117 (258)
T ss_dssp             --------------------ETTEEC---BCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEECCG
T ss_pred             --------------------eCCEee---CCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEcCC
Confidence                                001110   011111111 2446789999886 57999999999999998888875322 


Q ss_pred             ---C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808          238 ---N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL  313 (456)
Q Consensus       238 ---~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~  313 (456)
                         . .++...+...+.+     +++.+.|||++|| |.+ .+|++++++   +|++|+.+|.+|+|+ +++||||||||
T Consensus       118 d~~~~g~~~~~~~~~i~~-----ll~~g~ipVi~~~-g~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad-li~ltdV~Gv~  186 (258)
T 1gs5_A          118 ELGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGAD-LILLSDVSGIL  186 (258)
T ss_dssp             GGBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCE-EEEEESSSSCB
T ss_pred             CCCCcCceeEECHHHHHH-----HHHCCCEEEEeCC-cCC-CCCcEEEec---HHHHHHHHHHHhCCc-EEEEeCCCceE
Confidence               1 1233334444433     3578899999998 777 589998886   999999999999999 99999999999


Q ss_pred             cCCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          314 TCDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      ++|      +++|++++|+|+.+++..|.     ++.|+.|++++++.++|++|.|+++|+         ..||+|.
T Consensus       187 ~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~  257 (258)
T 1gs5_A          187 DGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             CTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             CCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence            976      57899999999999987654     667788999999999999999987763         4688875

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*

Probab=99.96  E-value=4.6e-29  Score=241.52  Aligned_cols=214  Identities=22%  Similarity=0.297  Sum_probs=160.2

Q ss_pred             cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        80 ~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      ..++|+||||+++.       |++.++++++.|....  +.++|+|+|+ |.+...+...                    
T Consensus         7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gG-G~~~~g~~~~--------------------   65 (240)
T 4a7w_A            7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGG-GNIIRGVSAA--------------------   65 (240)
T ss_dssp             CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTTC--------------------------
T ss_pred             CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-cHHHhHhHHH--------------------
Confidence            36799999999998       7899999999998643  3455666665 5555322110                    


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                                .+|.                        ......|.+..+.+.+|+.+++.+|+++|++++.+++.+++.
T Consensus        66 ----------~~G~------------------------~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~~  111 (240)
T 4a7w_A           66 ----------QGGI------------------------IRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKE  111 (240)
T ss_dssp             -------------C------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred             ----------hcCC------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcCc
Confidence                      0110                        111223444345678999999999999999999998877642


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      .+.         ..+...+.+     +++.+.|||++|+.|..          .+.+|++|+++|.+|+|+++++|||||
T Consensus       112 ~~~---------~~~~~~i~~-----lL~~g~ipVi~~~~g~~----------~~~~D~~Aa~lA~~l~Ad~li~lTdVd  167 (240)
T 4a7w_A          112 ICE---------SYIYRKAIR-----HLEKGRVVIFGAGTGNP----------FFTTDTAATLRAIEIGSDLIIKATKVD  167 (240)
T ss_dssp             TSE---------ECCHHHHHH-----HHHTTCEEEEESTTSCT----------TSCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             ccC---------cCcHHHHHH-----HHHCCCEEEEeCCCCCC----------CCChHHHHHHHHHHcCCCEEEEccCCC
Confidence            211         112233322     35788999999865421          134899999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC----------CCceEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN----------APGTLI  375 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I  375 (456)
                      |||++||+++|+|++|++++|+|+.++   |.++|||+|+++|.++|+|++|.|+++|+          ..||+|
T Consensus       168 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i  239 (240)
T 4a7w_A          168 GIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV  239 (240)
T ss_dssp             SEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred             ceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence            999999999999999999999998764   88999999999999999999999998875          357876

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3

Probab=99.96  E-value=1e-28  Score=240.50  Aligned_cols=218  Identities=20%  Similarity=0.238  Sum_probs=166.2

Q ss_pred             cceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        80 ~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      ..++|+||||+++.       +.+.++++++.|.... ....+|+|++.|...+.+.                       
T Consensus         7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~-----------------------   63 (252)
T 1z9d_A            7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP-----------------------   63 (252)
T ss_dssp             CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-----------------------
T ss_pred             CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-----------------------
Confidence            36799999999999       4689999999998653 2334555554466554331                       


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                             +++++.+                         ++..|.+.++++.+++.++..+|.+.|+++..+++.+.+.+
T Consensus        64 -------~~~lg~~-------------------------~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~  111 (252)
T 1z9d_A           64 -------AADAGMD-------------------------RVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNV  111 (252)
T ss_dssp             -------HHHHTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTT
T ss_pred             -------HHHcCCC-------------------------CCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence                   1122322                         22234556678899999999999999999999888765322


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEee-cCC
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD  310 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~T-DV~  310 (456)
                      ++ .|        ...++     ..+++.+.|||++|+.|      .    .++++|++|+.+|.+|+|++|+||| |||
T Consensus       112 ~~-~~--------~~~~~-----~~lL~~g~IpVi~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~LiilT~DVd  167 (252)
T 1z9d_A          112 AE-PY--------IRGRA-----LRHLEKNRIVVFGAGIG------S----PYFSTDTTAALRAAEIEADAILMAKNGVD  167 (252)
T ss_dssp             BE-EC--------CHHHH-----HHHHHTTCEEEEESTTS------C----TTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred             cC-cc--------hHHHH-----HHHHhCCCEEEEeCCcC------C----CCCChHHHHHHHHHhcCCCEEEEecCCCC
Confidence            11 11        11222     22467899999998432      1    2566999999999999999999999 999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEeecc
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRSR  379 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~~  379 (456)
                      |||++||+++|++++|++++++|+.+   +|+++||++++++|.++|+|++|.|+++|+         ..||+|.++.
T Consensus       168 Gvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  242 (252)
T 1z9d_A          168 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV  242 (252)
T ss_dssp             SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred             eeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence            99999999999999999999999876   588999999999999999999999998885         6799998753

>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2

Probab=99.96  E-value=2.1e-29  Score=251.31  Aligned_cols=239  Identities=20%  Similarity=0.271  Sum_probs=181.6

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      +++|+||||+++.+++.++++++.|.... ....+|||+++|+.++.+++..                            
T Consensus        26 k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~----------------------------   77 (299)
T 2ap9_A           26 KVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRL----------------------------   77 (299)
T ss_dssp             CEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHH----------------------------
T ss_pred             CeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHc----------------------------
Confidence            56999999999999999999999887643 2334555555777777776521                            


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH--hhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT  237 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~--s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~  237 (456)
                         +.+..           +.+++   +..++...+.+.  +.|+ ++.. +...|++.|++++.+++.+.+++++..++
T Consensus        78 ---~~~~~-----------~~~g~---R~t~~~~l~~~~~~~~G~-l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~~  138 (299)
T 2ap9_A           78 ---GIEGD-----------FKGGF---RVTTPEVLDVARMVLFGQ-VGRE-LVNLINAHGPYAVGITGEDAQLFTAVRRS  138 (299)
T ss_dssp             ---TCCCC-----------CSSSS---CCBCHHHHHHHHHHHHHT-HHHH-HHHHHTTSSSCEEEEETTGGGCEEEEECC
T ss_pred             ---CCccc-----------ccCCc---ccCCHHHHHHHHHHHhhH-HHHH-HHHHHHhCCCCceEechhHCCEEEEEecc
Confidence               11100           11111   123455566553  3576 5666 67889999999999999998777765432


Q ss_pred             -----------C-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808          238 -----------N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV  305 (456)
Q Consensus       238 -----------~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i  305 (456)
                                 . .++...+...+.+     +++.|.|||++|| +.+ ++|+.++++   +|++|+.+|.+|+|++++|
T Consensus       139 ~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVv~~v-~~~-~~G~~~~l~---~D~~Aa~lA~~l~Ad~lii  208 (299)
T 2ap9_A          139 VTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLLM  208 (299)
T ss_dssp             BCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEEE
T ss_pred             cccccccCCCCcceeEEEecHHHHHH-----HHhCCCeEEECCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEE
Confidence                       1 2233334443332     3578899999997 777 578888886   9999999999999999999


Q ss_pred             eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCc
Q 012808          306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APG  372 (456)
Q Consensus       306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~G  372 (456)
                      ||||||||++||+   ++++|++|+|+|+.+++.++...|+|+  ++..+.++|+| ++|.|+.+|+          ..|
T Consensus       209 lTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~G  285 (299)
T 2ap9_A          209 LTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTG  285 (299)
T ss_dssp             EESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCS
T ss_pred             EeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCc
Confidence            9999999999998   579999999999999999999999997  88899999999 9999998775          469


Q ss_pred             eEEeecc
Q 012808          373 TLIRRSR  379 (456)
Q Consensus       373 T~I~~~~  379 (456)
                      |+|.+..
T Consensus       286 T~i~~~~  292 (299)
T 2ap9_A          286 TKVVRGE  292 (299)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9997653

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A

Probab=99.96  E-value=4.3e-28  Score=235.12  Aligned_cols=215  Identities=22%  Similarity=0.299  Sum_probs=163.9

Q ss_pred             cceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      ..++|+|+||+++.+       .+.++++++.|....  +.++++|+|+ |.+..... .                    
T Consensus         9 ~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gG-G~~~~~~~-~--------------------   66 (243)
T 3ek6_A            9 YRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGG-GNIFRGAG-L--------------------   66 (243)
T ss_dssp             CSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECS-TTTSCSTT-T--------------------
T ss_pred             CcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHHH-H--------------------
Confidence            467999999999986       579999999998643  3455666665 44332110 0                    


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                               ..++++                         ....|++..+..++|+.++..+|++.|++++.+++.+++.
T Consensus        67 ---------~~~g~~-------------------------~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~  112 (243)
T 3ek6_A           67 ---------AASGMD-------------------------RVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKIND  112 (243)
T ss_dssp             ---------SCSSSC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTT
T ss_pred             ---------HHcCCC-------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCc
Confidence                     012221                         2223445555678999999999999999999999887654


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      ++.+ +        +...+.     .+++.|.|||++|+.|..          ++.+|++|+++|.+|+|+.+++|||||
T Consensus       113 v~~~-~--------~~~~~~-----~lL~~g~IpVv~~~~g~~----------~~~~D~~Aa~lA~~l~Ad~li~lTdVd  168 (243)
T 3ek6_A          113 VCED-F--------IRRRAI-----RHLEKGRIAIFAAGTGNP----------FFTTDSGAALRAIEIGADLLLKATKVD  168 (243)
T ss_dssp             TBEE-C--------CHHHHH-----HHHHTTCEEEEESTTSST----------TCCHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             ccCc-C--------CHHHHH-----HHHHCCcEEEEECCCCCC----------cCChHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3321 1        222222     235789999999954421          255999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEee
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR  377 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~  377 (456)
                      |||++||+++|+|++|++++|+|+.+   .|.++||++|++.|.++|+|++|.|+++|+         ..||+|.+
T Consensus       169 Gvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~  241 (243)
T 3ek6_A          169 GVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG  241 (243)
T ss_dssp             SCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred             ccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence            99999999999999999999999876   378999999999999999999999998764         57999975

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}

Probab=99.96  E-value=5.3e-28  Score=238.77  Aligned_cols=216  Identities=21%  Similarity=0.334  Sum_probs=157.3

Q ss_pred             CCcceEEEEeCccccC------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHH
Q 012808           78 EKQLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS  149 (456)
Q Consensus        78 ~~~~~~V~KFGGsSv~------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~  149 (456)
                      .+.+++|+|+||+++.      +.+.++++++.|+...  +.+++||+|+ |.+...+...                   
T Consensus        48 ~~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~Gg-G~i~~g~~~~-------------------  107 (281)
T 3nwy_A           48 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGG-GNFFRGAQLQ-------------------  107 (281)
T ss_dssp             CCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTC---CCTT-------------------
T ss_pred             CcCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-hhHhhhHHHH-------------------
Confidence            3456899999999998      5789999999998653  2344555543 5444322100                   


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEeccccee
Q 012808          150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG  229 (456)
Q Consensus       150 ~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~  229 (456)
                                 .+++                         .....|++..+++++|+.++...|+++|++++.+.+.+.+
T Consensus       108 -----------~~gl-------------------------~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~  151 (281)
T 3nwy_A          108 -----------QLGM-------------------------ERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMG  151 (281)
T ss_dssp             -----------TTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCG
T ss_pred             -----------hcCC-------------------------CccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence                       0122                         1223456666788999999999999999999877766554


Q ss_pred             EEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecC
Q 012808          230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV  309 (456)
Q Consensus       230 iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV  309 (456)
                      .++ +.|.            ..+... +++.|.|||++|+.|.          .++++|++|+++|.+|+||.+++||||
T Consensus       152 ~~~-~~~~------------~~~~l~-lL~~g~IpVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~LiilTDV  207 (281)
T 3nwy_A          152 QVA-EPYL------------PLRAVR-HLEKGRVVIFGAGMGL----------PYFSTDTTAAQRALEIGADVVLMAKAV  207 (281)
T ss_dssp             GGS-EECC------------HHHHHH-HHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccc-cccc------------hHHHHH-HHHcCCeEEEECCCCC----------CCCCHHHHHHHHHHHcCCCEEEEeecc
Confidence            333 1121            111222 4678999999985432          135699999999999999999999999


Q ss_pred             CccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       310 ~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      ||||++||+++|+|++|++++|+|+.+   .|.+++++++++.|.++|+|++|.|+++|+         ..||+|.
T Consensus       208 dGVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~  280 (281)
T 3nwy_A          208 DGVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT  280 (281)
T ss_dssp             SSCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred             CccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence            999999999999999999999999754   588999999999999999999999998764         5788885

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=99.95  E-value=5.2e-28  Score=247.50  Aligned_cols=227  Identities=20%  Similarity=0.308  Sum_probs=139.4

Q ss_pred             ceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808           81 LTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK  152 (456)
Q Consensus        81 ~~~V~KFGGsSv~s------~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~  152 (456)
                      .++|+||||+++.+      .+.++++++.|....  +.++|+|+|++  +.-.+                         
T Consensus         5 k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg--i~~g~-------------------------   57 (367)
T 2j5v_A            5 QTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGR-------------------------   57 (367)
T ss_dssp             CEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH--HHHHH-------------------------
T ss_pred             CEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH--HHHHH-------------------------
Confidence            57999999999998      489999999988653  33555555643  21111                         


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808          153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT  232 (456)
Q Consensus       153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit  232 (456)
                             ..|+++.                    +..+....+.+.+.|+...+.++..+|+++|+++..     + +++
T Consensus        58 -------~~lg~~~--------------------~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~q-----v-llt  104 (367)
T 2j5v_A           58 -------EHLGYPE--------------------LPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQ-----M-LLT  104 (367)
T ss_dssp             -------HHHTSCC--------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEE-----E-EEC
T ss_pred             -------HHcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEE-----E-EEe
Confidence                   0122211                    012334667778999999999999999999999853     3 555


Q ss_pred             ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceee--ccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vtt--lgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                      .++|.+.    ..+.+..+.+. .+++.+.|||+++       +|.+.+  +.+|++|++|+++|.+++|+.++||||||
T Consensus       105 ~~d~~~~----~r~~n~~~~i~-~LL~~g~IPIv~e-------nd~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVd  172 (367)
T 2j5v_A          105 RADMEDR----ERFLNARDTLR-ALLDNNVVPVINE-------NDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQK  172 (367)
T ss_dssp             GGGGSSH----HHHHHHHHHHH-HHHHTTCEEEEEE-------CTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC-
T ss_pred             cccccCc----eEEEhHHHHHH-HHHHCCCEEEECC-------CCceecccccCCCHHHHHHHHHHhcCCCEEEEeecCC
Confidence            5555432    12222223333 3567899999964       234444  77999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--HHHHHHHhCCCCEEEecCCCCC---------CCc
Q 012808          311 GVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------APG  372 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~G  372 (456)
                      |||++||+++|++++|+++++  +|+.+++.     +|..+|+|  +++.+|.++|+|++|.|+++|+         ..|
T Consensus       173 Gvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~G  252 (367)
T 2j5v_A          173 GLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVG  252 (367)
T ss_dssp             -----------------------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCS
T ss_pred             ceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCc
Confidence            999999999999999999999  99999875     47889999  5899999999999999999886         789


Q ss_pred             eEEeecc
Q 012808          373 TLIRRSR  379 (456)
Q Consensus       373 T~I~~~~  379 (456)
                      |+|.+..
T Consensus       253 T~i~~~~  259 (367)
T 2j5v_A          253 TLFHAQA  259 (367)
T ss_dssp             EEECCCS
T ss_pred             EEEEcCc
Confidence            9998753

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3

Probab=99.95  E-value=2.1e-27  Score=226.19  Aligned_cols=202  Identities=21%  Similarity=0.290  Sum_probs=153.6

Q ss_pred             ceEEEEeCccccCC-HHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s-~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      +++|+||||+++.+ .+.++++++.|.... +.++|+|+|+ |..++.++...                           
T Consensus         1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~g~~vvlV~gg-G~~~~~~~~~~---------------------------   52 (219)
T 2ij9_A            1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAREYIKSA---------------------------   52 (219)
T ss_dssp             CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHHHHHHHH---------------------------
T ss_pred             CeEEEEeChhhhCChHHHHHHHHHHHHHHcCCCEEEEEECc-chHhcchHHHH---------------------------
Confidence            46899999999999 899999999997642 3455666665 77777654322                           


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                       ++++.                         ++...|.+.+.++.+++.|++.+|+.. +.       +           
T Consensus        53 -~~~g~-------------------------~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~-------~-----------   87 (219)
T 2ij9_A           53 -RELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSA-AK-------K-----------   87 (219)
T ss_dssp             -HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTB-CS-------S-----------
T ss_pred             -HHcCC-------------------------CccchHHHHHHHHHHHHHHHHHHHHHh-cC-------C-----------
Confidence             22332                         334556777778899999998766542 10       0           


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN  318 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~  318 (456)
                         ...+...+.     .+++.+.|||++|  |.      .    .+++|++|+.+|.+|+|++++|||||||||++||+
T Consensus        88 ---~~~~~~~i~-----~ll~~g~ipVi~~--g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~  147 (219)
T 2ij9_A           88 ---VPVDFMEAE-----ELSKLYRVVVMGG--TF------P----GHTTDATAALLAEFIKADVFINATNVDGVYSADPK  147 (219)
T ss_dssp             ---CCSSHHHHH-----HHHTTCSEEEECC--CS------S----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred             ---CcCCHHHHH-----HHHHCCCEEEEeC--CC------C----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCC
Confidence               011233332     2467899999998  31      1    23599999999999999999999999999999999


Q ss_pred             CCCCCccccccCHHHHHHHHHc-CC-----CcchHHHHHHHHhCCCCEEEecCCCC---------CCCceEEe
Q 012808          319 IHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR  376 (456)
Q Consensus       319 ~v~~Ak~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~  376 (456)
                      ++|++++|++++|+|+.+++.. |.     .++|+.|++++.+.++|++|.|+ +|         +..||+|+
T Consensus       148 ~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~  219 (219)
T 2ij9_A          148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred             CCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence            9999999999999999999765 44     78999999999999999999998 65         34688873

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*

Probab=99.95  E-value=1.2e-27  Score=232.07  Aligned_cols=206  Identities=20%  Similarity=0.253  Sum_probs=156.1

Q ss_pred             cceEEEEeCccccC----CHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHH
Q 012808           80 QLTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH  155 (456)
Q Consensus        80 ~~~~V~KFGGsSv~----s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~  155 (456)
                      .+++|+||||+++.    +.+.++++++.|....+...+|+|++.|..++.++.                          
T Consensus        19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~g~~vViV~GgG~~~~~~~~--------------------------   72 (244)
T 2brx_A           19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIE--------------------------   72 (244)
T ss_dssp             CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHH--------------------------
T ss_pred             ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhCCCeEEEEECccHHHhchHH--------------------------
Confidence            36799999999999    779999999999864323345445444555554322                          


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC
Q 012808          156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD  235 (456)
Q Consensus       156 ~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~  235 (456)
                        .++.+++                         +....+.+.+.|+.+++.|++.+|++.|+++      +        
T Consensus        73 --~~~~~gl-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~--------  111 (244)
T 2brx_A           73 --VAEKFNS-------------------------SETFKDFIGIQITRANAMLLIAALREKAYPV------V--------  111 (244)
T ss_dssp             --HHHTTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C--------
T ss_pred             --HHHHcCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C--------
Confidence              1223333                         3345567777799999999998999999754      1        


Q ss_pred             CCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccC
Q 012808          236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC  315 (456)
Q Consensus       236 ~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta  315 (456)
                             ..+.+.+.     .+++.+.|||++|  |..          .+.+|++|+.+|.+|+|++++|||||||||++
T Consensus       112 -------~~~~~~i~-----~lL~~g~IpVi~g--g~~----------~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~  167 (244)
T 2brx_A          112 -------VEDFWEAW-----KAVQLKKIPVMGG--THP----------GHTTDAVAALLAEFLKADLLVVITNVDGVYTA  167 (244)
T ss_dssp             -------BCSHHHHH-----HHHHTTCBCEECC--CST----------TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred             -------cCCHHHHH-----HHHhCCCEEEEcC--CCC----------CCCchHHHHHHHHHcCCCEEEEEeCCCccCCC
Confidence                   01222232     2357889999998  321          22489999999999999999999999999999


Q ss_pred             CCCCCCCCccccccCHHHHHHHHHc-CC-----CcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          316 DPNIHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       316 DP~~v~~Ak~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      ||+++|++++|++++++|+.+++.. |.     .++++.|++++.+.++|++|.|+++|+         ..||+|.
T Consensus       168 dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~  243 (244)
T 2brx_A          168 DPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE  243 (244)
T ss_dssp             CTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred             CCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence            9999999999999999999999654 44     789999999999999999999876553         4688885

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.95  E-value=1.7e-27  Score=235.11  Aligned_cols=216  Identities=22%  Similarity=0.266  Sum_probs=160.0

Q ss_pred             eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        82 ~~V~KFGGsSv~s--~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      ++|+||||+ +.+  .+.+.++++.|........+|+||+.|+..+.++++.                            
T Consensus        41 ~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~~G~~vVlV~GGg~~~~~~~~~~----------------------------   91 (276)
T 2ogx_A           41 LQVVKIGGR-VMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVG----------------------------   91 (276)
T ss_dssp             EEEEEECHH-HHTTTHHHHHHHHHHHHHHTTTCEEEEEECCTHHHHHHHHHH----------------------------
T ss_pred             eEEEEEChh-hcCCCHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhcc----------------------------
Confidence            799999999 888  6899999999986543334444444444433332210                            


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA  239 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a  239 (456)
                      .+.+.                         ++...+.+...++.++..+++.++...|++++.+.               
T Consensus        92 ~~~gl-------------------------~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~---------------  131 (276)
T 2ogx_A           92 LDLGL-------------------------PVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHP---------------  131 (276)
T ss_dssp             HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHH---------------
T ss_pred             CcCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc---------------
Confidence            11222                         23445566666788999999888878888643111               


Q ss_pred             ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCce-eeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808          240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI-TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN  318 (456)
Q Consensus       240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~v-ttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~  318 (456)
                              ...+.+. .+++.+.|||++||.+.+. ++.+ ..+.++++|++|+.+|.+|+|++++|||||||||++||+
T Consensus       132 --------~~~~~i~-~lL~~g~IpVi~~~~~~~~-~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~  201 (276)
T 2ogx_A          132 --------TVADQLA-IHLSATRAVVGSAFPPYHH-HEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPN  201 (276)
T ss_dssp             --------HHHHHHH-HHHHHSSEEEEESSCTTGG-GCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTT
T ss_pred             --------ChHHHHH-HHHhCCCEEEEcCCccccc-ccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCC
Confidence                    0112222 2356789999999977651 1221 233566799999999999999999999999999999999


Q ss_pred             --CCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHH--hCCCCEEEecCCCC---------CCCceEEeec
Q 012808          319 --IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNP---------NAPGTLIRRS  378 (456)
Q Consensus       319 --~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~--~~~Ipv~I~n~~~p---------~~~GT~I~~~  378 (456)
                        .+|++++|++++++|+.+++  |..+|+|++...+.  +.++|++|.|+++|         +..||+|.++
T Consensus       202 ~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  272 (276)
T 2ogx_A          202 GPDRGQARFLPETSATDLAKSE--GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG  272 (276)
T ss_dssp             STTGGGCCEESEEEHHHHHTSC--SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred             ccCCCCCeEcceeCHHHHHHHh--CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence              89999999999999999887  88999999998888  66889999999887         5689999764

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}

Probab=99.95  E-value=1.2e-26  Score=226.58  Aligned_cols=214  Identities=21%  Similarity=0.232  Sum_probs=151.4

Q ss_pred             ceEEEEeCccccCC-------HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLAS-------AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD  153 (456)
Q Consensus        81 ~~~V~KFGGsSv~s-------~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~  153 (456)
                      .++|+||||+++.+       .+.++++++.|........+|+|++.|...+.+.                         
T Consensus        25 k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~-------------------------   79 (256)
T 2va1_A           25 QRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSI-------------------------   79 (256)
T ss_dssp             SEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHH-------------------------
T ss_pred             CEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccch-------------------------
Confidence            56999999999994       5789999998876433334555554466665432                         


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808          154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT  233 (456)
Q Consensus       154 ~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~  233 (456)
                           ++.++++.                         ...|....++..+++.++..+|++.|+++..+.+.+.     
T Consensus        80 -----~~~~g~~~-------------------------~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~-----  124 (256)
T 2va1_A           80 -----AKELDMDR-------------------------NLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC-----  124 (256)
T ss_dssp             -----HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCC-----
T ss_pred             -----HHHcCCCC-------------------------CchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeec-----
Confidence                 11233322                         1122334555688999989999999999988775432     


Q ss_pred             cCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeec-CCcc
Q 012808          234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDGV  312 (456)
Q Consensus       234 ~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TD-V~GV  312 (456)
                      +.+.+.  .  ...+    . ..+++.+.|||++|+.      |.    .++++|++|+.+|.+|+|++++|||| ||||
T Consensus       125 ~~~~~~--~--~~~~----~-~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGV  185 (256)
T 2va1_A          125 DKLVHE--S--SANN----I-KKAIEKEQVMIFVAGT------GF----PYFTTDSCAAIRAAETESSIILMGKNGVDGV  185 (256)
T ss_dssp             TTTCEE--C--CHHH----H-HHHHHTTCEEEEESTT------SS----SSCCHHHHHHHHHHHHTCSEEEEEESSCCSB
T ss_pred             ccccch--h--hHHH----H-HHHHhCCcEEEEECCC------CC----CCCChhHHHHHHHHhCCCCEEEEeecccCeE
Confidence            222211  1  1112    2 1246789999999832      32    35679999999999999999999999 9999


Q ss_pred             ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEEe
Q 012808          313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR  376 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~  376 (456)
                      |++||+++|++++|++++++|+.++   +.++|+++++..|.++|+|++|.|+++|+         ..||+|.
T Consensus       186 y~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~  255 (256)
T 2va1_A          186 YDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS  255 (256)
T ss_dssp             CSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred             EcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence            9999999999999999999999888   56788999999999999999999998764         4688875

>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}

Probab=99.94  E-value=7.5e-27  Score=232.75  Aligned_cols=236  Identities=17%  Similarity=0.259  Sum_probs=171.3

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .++|+||||+++.+++.++++++.|.... ....+|||+.+|+.++.+++..                            
T Consensus        37 k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~----------------------------   88 (298)
T 2rd5_A           37 KTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQL----------------------------   88 (298)
T ss_dssp             CEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHT----------------------------
T ss_pred             CEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHc----------------------------
Confidence            56999999999999999999998887542 2333445555666767665421                            


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC--
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD--  235 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i--~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~--  235 (456)
                         +.+..           +.+|++   ..++...|.+  ++.|+. +. .+...|++.|++++.+++.+.++++..+  
T Consensus        89 ---~~~~~-----------~~~g~R---~t~~~~l~~~~~~~~G~~-n~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~  149 (298)
T 2rd5_A           89 ---NIPAE-----------FRDGLR---VTDATTMEIVSMVLVGKV-NK-NLVSLINAAGATAVGLSGHDGRLLTARPVP  149 (298)
T ss_dssp             ---TCCCC-----------EETTEE---CBCHHHHHHHHHHHHHTH-HH-HHHHHHHHTTSCEEEEETTGGGCEEEEECT
T ss_pred             ---CCCcc-----------ccCCcc---cCCHHHHHHHHHHHhchH-HH-HHHHHHHhCCCCccccChHHCCEEEEEeCC
Confidence               11110           111211   2234444443  224654 55 4677899999999999988777777653  


Q ss_pred             ----CCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          236 ----FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       236 ----~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                          +++ .++...+...+.+     +++.|.|||++|+ +.+ ..|+.++++   +|++|+.+|.+|+|++++||||||
T Consensus       150 ~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~v-~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTdVd  219 (298)
T 2rd5_A          150 NSAQLGFVGEVARVDPSVLRP-----LVDYGYIPVIASV-AAD-DSGQAYNIN---ADTVAGELAAALGAEKLILLTDVA  219 (298)
T ss_dssp             THHHHBSEEEEEEECGGGHHH-----HHHTTCEEEEESE-EEC-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESSS
T ss_pred             ccccCCcceEEEEECHHHHHH-----HHhCCCEEEEcCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence                333 2333334433332     3568899999996 666 478888886   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI  375 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I  375 (456)
                      |||++||+  | +++|++++++|+.+++..|  ...|+|+  ++..+.++|+| ++|.|+..|+          ..||+|
T Consensus       220 GVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i  296 (298)
T 2rd5_A          220 GILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMI  296 (298)
T ss_dssp             SEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEE
T ss_pred             CeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEE
Confidence            99999998  4 9999999999999998764  4679986  78889999999 9999987764          357887


Q ss_pred             e
Q 012808          376 R  376 (456)
Q Consensus       376 ~  376 (456)
                      .
T Consensus       297 ~  297 (298)
T 2rd5_A          297 T  297 (298)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2

Probab=99.94  E-value=1.3e-26  Score=229.03  Aligned_cols=233  Identities=23%  Similarity=0.289  Sum_probs=168.5

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      +++|+||||+++.+++.++++++.|.... ....+|+|+++|+.++.+++...                           
T Consensus        22 ~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~---------------------------   74 (282)
T 2bty_A           22 KTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLG---------------------------   74 (282)
T ss_dssp             CEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHT---------------------------
T ss_pred             CeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC---------------------------
Confidence            57999999999999999999999887643 23335555557777777664211                           


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec---
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD---  234 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i--~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~---  234 (456)
                          .+..           +.++++   ..++...|.+  +..|+. +.. +...|++.|++++.+++.+.++++..   
T Consensus        75 ----~~~~-----------~~~g~r---~t~~~~l~~~~~~~~G~~-~~~-l~~~l~~~g~~a~~l~~~~~~~l~~~~~~  134 (282)
T 2bty_A           75 ----IEPV-----------FKNGHR---VTDEKTMEIVEMVLVGKI-NKE-IVMNLNLHGGRAVGICGKDSKLIVAEKET  134 (282)
T ss_dssp             ----CCCC-----------BSSSSB---CBCHHHHHHHHHHHHHTH-HHH-HHHHHHTTTCCEEEEETTGGGSEEEEECC
T ss_pred             ----CCcc-----------ccCCcc---cCCHHHHHHHHHHHhhHH-HHH-HHHHHHhCCCCceecChhhCCEEEEecCC
Confidence                1100           011111   2234444432  224665 444 67889999999999988776666654   


Q ss_pred             ---CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       235 ---~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                         ++++ .++...+...+.+     +++.|.|||++|| +.+ +.|+.++++   +|++|+.+|.+|+|++++||||||
T Consensus       135 ~~~d~g~~g~v~~~~~~~i~~-----ll~~g~IpVi~~v-~~~-~~G~~~~~~---~D~~Aa~lA~~l~Ad~liilTDVd  204 (282)
T 2bty_A          135 KHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDVD  204 (282)
T ss_dssp             TTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESSS
T ss_pred             cccCCCcceEEEEecHHHHHH-----HHHCCCEEEECCC-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCC
Confidence               3444 2333344443332     3567999999997 766 478888886   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchH--HHHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHP--QSMRPAREGDIP-VRVKNSYNPN----------APGTLI  375 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga--~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I  375 (456)
                      |||++ |      ++|++++++|+.+++..|.  ..|.|  +++..+.++|+| ++|.|+..|+          ..||+|
T Consensus       205 Gvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i  277 (282)
T 2bty_A          205 GVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI  277 (282)
T ss_dssp             SCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEE
T ss_pred             CeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEE
Confidence            99997 3      8999999999999987654  45765  589999999998 9999987664          479999


Q ss_pred             ee
Q 012808          376 RR  377 (456)
Q Consensus       376 ~~  377 (456)
                      .+
T Consensus       278 ~~  279 (282)
T 2bty_A          278 KE  279 (282)
T ss_dssp             CC
T ss_pred             Ee
Confidence            75

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3

Probab=99.94  E-value=1.9e-26  Score=224.13  Aligned_cols=215  Identities=18%  Similarity=0.217  Sum_probs=152.3

Q ss_pred             ceEEEEeCccccC-----CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLA-----SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL  154 (456)
Q Consensus        81 ~~~V~KFGGsSv~-----s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~  154 (456)
                      .++|+||||+++.     +.+.++++++.|.... ..++|+|+|++  ....+.                          
T Consensus         2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~~~vVlVhgGg--~~~~~~--------------------------   53 (251)
T 2ako_A            2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAA--ISAGHT--------------------------   53 (251)
T ss_dssp             CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECCH--HHHHHH--------------------------
T ss_pred             CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCH--HHHHHH--------------------------
Confidence            4689999999999     8899999999987642 23444555533  222111                          


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec
Q 012808          155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD  234 (456)
Q Consensus       155 ~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~  234 (456)
                            .++.+.                      ......+.+.+.|+....+++..+|++.|+++..     + .++.+
T Consensus        54 ------~~g~~~----------------------~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~-----i-~~~~~   99 (251)
T 2ako_A           54 ------KLDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQ-----I-LLTGK   99 (251)
T ss_dssp             ------HCCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEE-----E-EECTG
T ss_pred             ------HhCCcc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE-----E-Eeccc
Confidence                  122111                      0112236778889999999999999999999764     2 34444


Q ss_pred             CCCCcceeecchHHHHH-HHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808          235 DFTNADILEATYPAVAK-RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL  313 (456)
Q Consensus       235 ~~~~a~i~~~~~~~i~~-~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~  313 (456)
                      +|.+. +     .++.. .....+++.+.|||++|+-+...  ++.   .++++|++|+.+|.+|+|++++|||||||||
T Consensus       100 ~~~~~-~-----~~~~~~~~i~~ll~~g~ipVi~~~d~v~~--~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy  168 (251)
T 2ako_A          100 DFDSR-K-----ATKHAKNAIDMMINLGILPIINENDATAI--EEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFY  168 (251)
T ss_dssp             GGGCH-H-----HHHHHHHHHHHHHHTTCEEEEEECTTTCC--HHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCB
T ss_pred             hhcCc-c-----eEehHHHHHHHHHHCCCEEEEeCCCceee--cce---eecCchHHHHHHHHhcCCCEEEEEeCCCcee
Confidence            43221 1     11211 22333567899999997533221  122   4678999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccCHH--HHHHHHH-----cCCCcchH--HHHHHHHhCCCCEEEecCCCC
Q 012808          314 TCDPNIHPHAKPVPYLTFD--EAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNP  368 (456)
Q Consensus       314 taDP~~v~~Ak~i~~ls~~--Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p  368 (456)
                      ++||+++|++++|++++++  |+.+++.     +|+..|.|  +++.++.++|+|++|.|+.+|
T Consensus       169 ~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~  232 (251)
T 2ako_A          169 DKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL  232 (251)
T ss_dssp             SSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             eCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence            9999999999999999999  9999865     67776665  589999999999999998776

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.93  E-value=4.5e-26  Score=224.03  Aligned_cols=159  Identities=17%  Similarity=0.164  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCC--Ccee
Q 012808          203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT--CAIT  280 (456)
Q Consensus       203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~--G~vt  280 (456)
                      .+|+. +.++|+++|++++++++.+.++++.     .++...+...+.+     +++.+.|||++||++.+ .+  |+++
T Consensus        89 ~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~-----g~v~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~~~g~~~  156 (269)
T 3ll9_A           89 KLNSH-VCDALLAEGIPAVSMQPSAFIRAHA-----GRISHADISLIRS-----YLEEGMVPVVYGDVVLD-SDRRLKFS  156 (269)
T ss_dssp             HHHHH-HHHHHHHTTCCEEECCGGGTEEEET-----TEEEEECCHHHHH-----HHHTTCEEEEECEEEEB-SCTTTSEE
T ss_pred             HHHHH-HHHHHHHCCCcEEEEcchHcCeEec-----CeeeeecHHHHHH-----HHHCCCEEEECCCEEec-ccccCcce
Confidence            67776 5778999999999999999866652     3444444444433     35679999999999877 46  7788


Q ss_pred             eccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHH-----cCCCcchHH--HHHHH
Q 012808          281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGAQVLHPQ--SMRPA  353 (456)
Q Consensus       281 tlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~-----~Ga~vlhp~--a~~~a  353 (456)
                      +++   +|++|+.+|.+|+|+++++||||||||++||+++|++++|++++++|+.++..     ++...|.|+  ++..+
T Consensus       157 ~~~---~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a  233 (269)
T 3ll9_A          157 VIS---GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLL  233 (269)
T ss_dssp             EEC---HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHH
T ss_pred             ecc---hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHH
Confidence            886   99999999999999999999999999999999999999999999999977643     344567776  66677


Q ss_pred             HhCCCCEEEecCCCCC---------CC-ceEEe
Q 012808          354 REGDIPVRVKNSYNPN---------AP-GTLIR  376 (456)
Q Consensus       354 ~~~~Ipv~I~n~~~p~---------~~-GT~I~  376 (456)
                      .++|+|++|.|+..|+         .. ||+|.
T Consensus       234 ~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~  266 (269)
T 3ll9_A          234 AEKGVESEIINAAVPGNIERALLGEEVRGTRIT  266 (269)
T ss_dssp             HHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred             HhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence            7899999999987764         45 88886

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.93  E-value=5.4e-25  Score=216.41  Aligned_cols=216  Identities=17%  Similarity=0.242  Sum_probs=150.7

Q ss_pred             eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        82 ~~V~KFGGsSv~s--~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      ++|+||||+++.+  .+.++++++.|....+...+|+|++.|...+.+.+++                            
T Consensus        38 ~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~~~vVlVhGGg~~~~~~~~~~----------------------------   89 (270)
T 2ogx_B           38 ATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIA----------------------------   89 (270)
T ss_dssp             EEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTCEEEEEECCCHHHHHHHHHH----------------------------
T ss_pred             eEEEEechHHhCCCCHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHH----------------------------
Confidence            7899999999998  5899999999986533234444444444443332211                            


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA  239 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a  239 (456)
                      .+++.+..                       ........+.|  ++..++...|.++|++.          +|..++   
T Consensus        90 ~~~g~~~~-----------------------~~~~~~~~a~G--~~~l~~~~~l~~~G~~~----------vt~~d~---  131 (270)
T 2ogx_B           90 AGLGLPAG-----------------------VLAQLGSSVAD--QNAAMLGQLLAKHGIPV----------VGGAGL---  131 (270)
T ss_dssp             HHTTCCHH-----------------------HHHHHHHHHHH--HHHHHHHHHHGGGTCCB----------CCSSTT---
T ss_pred             HhcCCChH-----------------------HHHHHHHHHHH--HHHHHHHHHHHhcCCce----------ecHhhH---
Confidence            11222110                       01112233434  45666777788888872          222221   


Q ss_pred             ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccC---CCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808          240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCD  316 (456)
Q Consensus       240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgR---GGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD  316 (456)
                             ..+.     .+++.+.|||++||.|.+...+. ++.|+   +++|++|+.+|.+|+|+++++||||||||++|
T Consensus       132 -------~~i~-----~lL~~g~ipVi~g~~g~~~~~~~-~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~d  198 (270)
T 2ogx_B          132 -------SAVP-----LSLAEVNAVVFSGMPPYKLWMRP-AAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTAN  198 (270)
T ss_dssp             -------CHHH-----HHCTTCCEEEEECSCTTGGGCCC-CSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSC
T ss_pred             -------HHHH-----HHHhCCCEEEEeCCccccccccc-cccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCC
Confidence                   1122     23678999999999876521222 23333   78999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHh--CCCCEEEecCCCCC---------CCceEEee
Q 012808          317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE--GDIPVRVKNSYNPN---------APGTLIRR  377 (456)
Q Consensus       317 P~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~--~~Ipv~I~n~~~p~---------~~GT~I~~  377 (456)
                      |+.+|++++|++++++|+.+++..| +++++.....++.  .++|++|.|+.+|+         ..||+|.+
T Consensus       199 P~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~  269 (270)
T 2ogx_B          199 PKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA  269 (270)
T ss_dssp             SSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             CCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence            9999999999999999999998655 6788877666665  57899999998875         67999964

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*

Probab=99.93  E-value=3.1e-26  Score=227.14  Aligned_cols=222  Identities=13%  Similarity=0.086  Sum_probs=154.4

Q ss_pred             ceEEEEeCccccCCHH--------HHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           81 LTCVMKFGGSSLASAE--------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~--------~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      .++|+||||+++.+++        .++++++.|....  +.+++||||++|+..+.+++...                  
T Consensus        24 ~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~------------------   85 (286)
T 3d40_A           24 DFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHD------------------   85 (286)
T ss_dssp             SEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC---------------------------
T ss_pred             CEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcC------------------
Confidence            4799999999999864        8999998887653  22257777999998887654211                  


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                                   .+.                     ++.    +...+.|+-.....+..+|+++|+++..+.+.+.++
T Consensus        86 -------------~~~---------------------~~~----~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~  127 (286)
T 3d40_A           86 -------------STH---------------------AFS----LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCT  127 (286)
T ss_dssp             -------------------------------------CCT----THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEE
T ss_pred             -------------CCc---------------------ccc----hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCc
Confidence                         000                     011    112333333344567888999999999998877654


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHH-cCCceEEEeecC
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA-LGLQEIQVWKDV  309 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~-L~A~~l~i~TDV  309 (456)
                       |.+  +   +.......+.+     +++.+.|||++||++.+ .+|++   .++++|++|+.+|.+ |+|++|+|||||
T Consensus       128 -t~d--g---~~~~~~~~i~~-----lL~~g~IpVi~gd~~~~-~~g~~---~~~~~D~~Aa~lA~~~l~Ad~LiilTDV  192 (286)
T 3d40_A          128 -LRN--G---IPQLRSEVLRD-----VLDHGALPVLAGDALFD-EHGKL---WAFSSDRVPEVLLPMVEGRLRVVTLTDV  192 (286)
T ss_dssp             -EET--T---EEEECCSHHHH-----HHHTTCEEEEECEEEEB-TTSCE---EEECGGGHHHHTTTTCCSCEEEEEEESS
T ss_pred             -ccC--C---eEEehHHHHHH-----HHHCcCEEEEcCCeEEc-CCCCE---EeeCHHHHHHHHHHhhCCCCEEEEecCC
Confidence             443  2   22222223332     35788999999988877 46764   456699999999999 999999999999


Q ss_pred             CccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchH--HHHHHHHhCCCCEEEecCCCCCCCceEEe
Q 012808          310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHP--QSMRPAREGDIPVRVKNSYNPNAPGTLIR  376 (456)
Q Consensus       310 ~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~--------~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~  376 (456)
                      ||||++||+   ++++|++|+++|+.++..        ++..+|+|  +++..+.++|+|++|.|+.+|+....+++
T Consensus       193 dGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t  266 (286)
T 3d40_A          193 DGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTA  266 (286)
T ss_dssp             SSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGS
T ss_pred             CeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhc
Confidence            999999999   899999999988766632        36689998  58999999999999999988865444443

>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*

Probab=99.93  E-value=1.5e-25  Score=225.65  Aligned_cols=237  Identities=19%  Similarity=0.291  Sum_probs=171.7

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      +++|+||||+++.+++.++++++.|....  +.++|+|+|+ |...+.+++.                            
T Consensus        50 k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~----------------------------  100 (321)
T 2v5h_A           50 RTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGG-GPEINAWLGR----------------------------  100 (321)
T ss_dssp             CEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHH----------------------------
T ss_pred             CeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHH----------------------------
Confidence            56999999999999988899988887542  3355555554 6555554431                            


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec--
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD--  234 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i--~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~--  234 (456)
                         ++++..           +.+|++   ..++...|.+  ++.|+. +.. +...|+..|++++.+++.+.++++..  
T Consensus       101 ---~g~~~~-----------~~~g~R---vt~~~~l~~~~~~~~G~i-n~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~~  161 (321)
T 2v5h_A          101 ---VGIEPQ-----------FHNGLR---VTDADTMEVVEMVLVGRV-NKD-IVSRINTTGGRAVGFCGTDGRLVLARPH  161 (321)
T ss_dssp             ---TTCCCC-----------BSSSSB---CBCHHHHHHHHHHHHHTH-HHH-HHHHHHHHTCCEEEECTTGGGSEEEEEC
T ss_pred             ---cCCCcc-----------ccCCcc---cCCHHHHHHHHHHHhChH-HHH-HHHHHHhCCCCeeeeChhhccEEEeecC
Confidence               121110           111211   1234555555  234644 654 66789999999999988776666654  


Q ss_pred             ---CCCCc-ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          235 ---DFTNA-DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       235 ---~~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                         ++++. ++...+...+.+     +++.|.|||+++ ++.+ ..|+...++   +|++|+.+|.+|+|++++|+||||
T Consensus       162 ~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTDVd  231 (321)
T 2v5h_A          162 DQEGIGFVGEVNSVNSEVIEP-----LLERGYIPVISS-VAAD-ENGQSFNIN---ADTVAGEIAAALNAEKLILLTDTR  231 (321)
T ss_dssp             SSCSSBSBEEEEEECGGGTHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCccccccceeEEecHHHHHH-----HHHCCCeEEEeC-ceEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEeeCCC
Confidence               55543 333334433332     357899999995 5666 477765554   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCCC----------CCceEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI  375 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I  375 (456)
                      |||++||+   ++++|++|+++|+.+++..|  +.+|+|+  ++..+.++|+| ++|.|+..|+          ..||+|
T Consensus       232 GVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I  308 (321)
T 2v5h_A          232 GILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMI  308 (321)
T ss_dssp             SCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEE
T ss_pred             ceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEE
Confidence            99999998   68999999999999998764  6789985  88999999999 9999986654          579999


Q ss_pred             eec
Q 012808          376 RRS  378 (456)
Q Consensus       376 ~~~  378 (456)
                      .+.
T Consensus       309 ~~~  311 (321)
T 2v5h_A          309 VGS  311 (321)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            864

>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2

Probab=99.92  E-value=2e-24  Score=215.47  Aligned_cols=234  Identities=21%  Similarity=0.322  Sum_probs=169.1

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .++|+||||+++.+++.+..+++.|....  +.++|+|+|+ |...+.+++.                            
T Consensus        27 k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~----------------------------   77 (300)
T 2buf_A           27 KTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGG-GPQIGDLLKR----------------------------   77 (300)
T ss_dssp             CEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHHHHH----------------------------
T ss_pred             CeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECC-cHHHHHHHHH----------------------------
Confidence            57999999999999988999988887542  3455556654 6665555431                            


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec--
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD--  234 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i--~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~--  234 (456)
                         ++++..           +.+|++   ..++...|.+  ++.|+.  ...+...|+..|++++.+++.+.++++..  
T Consensus        78 ---~g~~~~-----------~~~g~r---vt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~  138 (300)
T 2buf_A           78 ---LSIESH-----------FIDGMR---VTDAATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKL  138 (300)
T ss_dssp             ---TTCCCC-----------BSSSSB---CBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEEC
T ss_pred             ---cCCCcc-----------ccCCee---cCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeec
Confidence               111110           111211   1234555555  334665  55677889999999999988776676654  


Q ss_pred             ---------------CCCCc-ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHc
Q 012808          235 ---------------DFTNA-DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKAL  298 (456)
Q Consensus       235 ---------------~~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L  298 (456)
                                     ++++. ++...+...+.     .+++.|.|||+++ ++.+ +.|+..+++   +|++|+.+|.+|
T Consensus       139 ~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~-----~lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l  208 (300)
T 2buf_A          139 TVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLN-----MLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEAL  208 (300)
T ss_dssp             CCCCC--------CCCCBSBEEEEEECHHHHH-----HHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHHH
T ss_pred             cccccchhhcccccccCCcceeEEEECHHHHH-----HHHHCCCEEEEcC-ceeC-CCCCEEEEC---HHHHHHHHHHHc
Confidence                           23332 22233433332     2457899999995 4666 478887776   999999999999


Q ss_pred             CCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--HHHHHHHhCCCC-EEEecCCCCC----
Q 012808          299 GLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPN----  369 (456)
Q Consensus       299 ~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----  369 (456)
                      +|++++|||||||||++      ++++|++++++|+.+++..|  ..+|+|  +++..+.++|+| ++|.|+..|+    
T Consensus       209 ~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~  282 (300)
T 2buf_A          209 KAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLL  282 (300)
T ss_dssp             TCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHH
T ss_pred             CCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHH
Confidence            99999999999999997      48899999999999998765  578999  588899999999 9999987664    


Q ss_pred             ------CCceEEeec
Q 012808          370 ------APGTLIRRS  378 (456)
Q Consensus       370 ------~~GT~I~~~  378 (456)
                            ..||+|.+.
T Consensus       283 ~~~~~~~~GT~i~~~  297 (300)
T 2buf_A          283 EIFTDSGVGTLISNR  297 (300)
T ss_dssp             HHSSTTCCSEEEECC
T ss_pred             HHhcCCCCceEEEeC
Confidence                  579999753

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=99.92  E-value=9.1e-25  Score=215.54  Aligned_cols=227  Identities=17%  Similarity=0.230  Sum_probs=164.2

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .++|+||||+++.+.  ++++++.|...  .+.++|+|+|++..++..|.+++                           
T Consensus        37 k~iVIKiGGs~l~~~--~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg---------------------------   87 (279)
T 3l86_A           37 DIIVIKIGGVASQQL--SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQ---------------------------   87 (279)
T ss_dssp             CEEEEEECTTGGGSC--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT---------------------------
T ss_pred             ceEEEEEChHHHHhH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcC---------------------------
Confidence            478999999999873  56666666543  24466777776445555544332                           


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH--hhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF  236 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~--s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~  236 (456)
                           ++..           +.+|++++   +++..+.+-  ..| .++.. +.+.|++.|+++..+++.+.+++|.+++
T Consensus        88 -----~~~~-----------~~~G~Rvt---d~~~l~~v~~~l~G-~ln~~-i~~~L~~~G~~a~~l~g~dg~llta~~~  146 (279)
T 3l86_A           88 -----VPVK-----------KINGLRVT---SKDDMVLVSHALLD-LVGKN-LQEKLRQAGVSCQQLKSDIKHVVAADYL  146 (279)
T ss_dssp             -----CCCC-----------EETTEECB---CHHHHHHHHHHHHH-TTHHH-HHHHHHHTTCCEEECSGGGGGTEEEEES
T ss_pred             -----CCCc-----------cCCCcccC---cHHHHHHHHHHHHH-HHHHH-HHHHHHhCCCCEEEEecCcCCEEEeecc
Confidence                 2111           11222221   233333331  113 23343 6678999999999999999889998743


Q ss_pred             -----CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          237 -----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       237 -----~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                           ++ .++...+...+.+     +++.|.|||++| ++.+ ++|+.++++   +|++|+.+|.+|+|++++||||||
T Consensus       147 ~~~d~g~vG~i~~v~~~~i~~-----lL~~g~IPVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTDVd  216 (279)
T 3l86_A          147 DKDTYGYVGDVTHINKRVIEE-----FLENRQIPILAS-LGYS-KEGDMLNIN---ADYLATAVAVALAADKLILMTNVK  216 (279)
T ss_dssp             CHHHHBSBEEEEEECHHHHHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CccccCcccccchhhHHHHHH-----HHhCCcEEEECC-cEEC-CCCCEeecC---HHHHHHHHHHHcCCCEEEEEeCCC
Confidence                 44 3555555544443     357899999999 8877 478888886   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--HHHHHHHhCCCC-EEEecCCCCCCCceEEee
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPNAPGTLIRR  377 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~~~GT~I~~  377 (456)
                      |||+       ++++|++++++|+.+++..|  ...|.|  +++..|.++|+| ++|.|++.+   ||+|..
T Consensus       217 GV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~---GT~i~~  278 (279)
T 3l86_A          217 GVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT---GTLITA  278 (279)
T ss_dssp             SCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC---SEEEEC
T ss_pred             cccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC---CeEEec
Confidence            9994       47899999999999998754  467888  588999999998 999999985   999975

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1

Probab=99.91  E-value=1.9e-24  Score=216.98  Aligned_cols=237  Identities=16%  Similarity=0.140  Sum_probs=159.3

Q ss_pred             ceEEEEeCccccC--CH--------HHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHH
Q 012808           81 LTCVMKFGGSSLA--SA--------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL  148 (456)
Q Consensus        81 ~~~V~KFGGsSv~--s~--------~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l  148 (456)
                      .++|+||||+++.  ++        +.++++++.|....  +.++|+|+|++..+++.|.+.....              
T Consensus         3 k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~--------------   68 (314)
T 1e19_A            3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ--------------   68 (314)
T ss_dssp             CEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH--------------
T ss_pred             CEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc--------------
Confidence            4789999999999  54        58888888887542  4467778877777887776643210              


Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH--hhhH---HHHHHHHHHHHHHcCCce---
Q 012808          149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGE---CMSTRIFAAYLNKIGVKA---  220 (456)
Q Consensus       149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~--s~GE---~lsa~lla~~L~~~Gi~a---  220 (456)
                           .+    +  .                      +   +++..+.+.  ..|+   .+ ..++...|++.|+++   
T Consensus        69 -----~~----~--~----------------------~---~~~~l~~~~a~~~G~i~~~l-~~~l~~~l~~~gi~a~~~  111 (314)
T 1e19_A           69 -----AT----Y--G----------------------I---PAQPMDVAGAMSQGWIGYMI-QQALKNELRKRGMEKKVV  111 (314)
T ss_dssp             -----HH----H--C----------------------C---CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCCCEE
T ss_pred             -----cc----C--C----------------------C---ChhHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCCchhhh
Confidence                 00    0  0                      0   111122232  1233   55 556778899999987   


Q ss_pred             -----EEecccce----------eEEeec-------CC------------CCcc-----eeecchHHHHHHHhhccccCC
Q 012808          221 -----RQYDAFDI----------GFITTD-------DF------------TNAD-----ILEATYPAVAKRLHGDWITDL  261 (456)
Q Consensus       221 -----~~ld~~~~----------~iit~~-------~~------------~~a~-----i~~~~~~~i~~~l~~~ll~~~  261 (456)
                           +.+++.+.          ++++.+       ++            .++.     +...+...+     ..+++.|
T Consensus       112 ~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i-----~~lL~~g  186 (314)
T 1e19_A          112 TIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETI-----KKLVERG  186 (314)
T ss_dssp             EBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHH-----HHHHHTT
T ss_pred             hhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHH-----HHHHHCC
Confidence                 55565552          233210       01            1110     111222222     2346789


Q ss_pred             ceEEEcCCCcCCC-CCCceeeccC---CCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHH
Q 012808          262 AIPIVTGFLGKAW-RTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL  337 (456)
Q Consensus       262 ~VpVv~Gfig~~~-~~G~vttlgR---GGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eL  337 (456)
                      .|||++||.|... .+.+. ++|+   +++|++|+.+|.+|+|++++|||||||||++||  .|++++|++++++|+.++
T Consensus       187 ~IpV~~Gg~giPi~~~~d~-~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~~~  263 (314)
T 1e19_A          187 VIVIASGGGGVPVILEDGE-IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRKY  263 (314)
T ss_dssp             CEEECSGGGCEEEEEETTE-EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHHH
T ss_pred             CEEEEeCCCccCeEECCCC-cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHHHH
Confidence            9999998755421 01122 4564   889999999999999999999999999999999  489999999999999999


Q ss_pred             HHcCC---CcchHH---HHHHHHhCCCCEEEec------CCCCCCCceEEee
Q 012808          338 AYFGA---QVLHPQ---SMRPAREGDIPVRVKN------SYNPNAPGTLIRR  377 (456)
Q Consensus       338 a~~Ga---~vlhp~---a~~~a~~~~Ipv~I~n------~~~p~~~GT~I~~  377 (456)
                      +..|.   ..|+||   |++.+++.++|++|.|      .++. ..||+|.+
T Consensus       264 ~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~  314 (314)
T 1e19_A          264 YEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP  314 (314)
T ss_dssp             HHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred             HhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence            87653   679998   6677888999999987      2333 47999863

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*

Probab=99.90  E-value=3e-23  Score=201.68  Aligned_cols=223  Identities=16%  Similarity=0.190  Sum_probs=148.7

Q ss_pred             cceEEEEeCccccCCH--------HHHHHHHHHHHcCCCCCcE-EEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           80 QLTCVMKFGGSSLASA--------ERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~--------~~~~~va~iI~~~~~~~~v-vVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      ..++|+||||+++.++        +.++++++.|..  +.++| +|+++ |...+.+++                     
T Consensus         3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~--G~~vv~lVhGG-G~~~~~~~~---------------------   58 (249)
T 3ll5_A            3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG--IEDLVCVVHGG-GSFGHIKAM---------------------   58 (249)
T ss_dssp             -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT--CTTEEEEEECC-GGGTHHHHH---------------------
T ss_pred             ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc--CCceEEEEECc-cHHHHHHHH---------------------
Confidence            3578999999999986        489999999986  55666 67766 666655332                     


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                                ++++++.....  +     -.++        +..+..+  + .+|+.++ ++|+++|+++.++++.++++
T Consensus        59 ----------~~gi~~~~~~~--d-----~~gl--------~~t~~~~--~-~ln~~~v-~~l~~~G~~a~~l~~~~~~~  109 (249)
T 3ll5_A           59 ----------EFGLPGPKNPR--S-----SIGY--------SIVHRDM--E-NLDLMVI-DAMIEMGMRPISVPISALRY  109 (249)
T ss_dssp             ----------HHTCSEECCHH--H-----HHHH--------HHHHHHH--H-HHHHHHH-HHHHHTTCCEEECCGGGSCB
T ss_pred             ----------HhCCCcCCCcc--c-----cccH--------HHHHHHH--H-HHHHHHH-HHHHHCCCcEEEEcHHHccc
Confidence                      11222110000  0     0011        1111122  2 7888887 77999999999999888643


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                             ..++   +...+..     +++.|.|||++|+++.+ .+|..++++   +|++|+.+|.+|+|+++++|||||
T Consensus       110 -------~g~v---~~~~i~~-----ll~~g~ipVi~~~~~~~-~~~~~~~~~---~D~~Aa~lA~~l~Ad~li~ltdvd  170 (249)
T 3ll5_A          110 -------DGRF---DYTPLIR-----YIDAGFVPVSYGDVYIK-DEHSYGIYS---GDDIMADMAELLKPDVAVFLTDVD  170 (249)
T ss_dssp             -------SSSB---CCHHHHH-----HHHTTCEEEEECEEEEE-ETTEEEEEC---HHHHHHHHHHHHCCSEEEEEESSS
T ss_pred             -------ccEE---cHHHHHH-----HHHCCCEEEECCCEEEc-CCCceeeec---HHHHHHHHHHhcCCCEEEEEeCCC
Confidence                   1233   2222322     35789999999988765 356655444   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHH--HcCCCcchHH--HHHHH-HhCCCCEEEecCCCCC--------CC-ceEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELA--YFGAQVLHPQ--SMRPA-REGDIPVRVKNSYNPN--------AP-GTLI  375 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa--~~Ga~vlhp~--a~~~a-~~~~Ipv~I~n~~~p~--------~~-GT~I  375 (456)
                      |||++||+++|++++++++. +++..+.  .++...|.|+  ++..+ .++|++++|.|+.+|+        .. ||+|
T Consensus       171 Gv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~l~g~~~~GT~i  248 (249)
T 3ll5_A          171 GIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVI  248 (249)
T ss_dssp             SCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGGTTSTTCCSEEE
T ss_pred             ccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHHhCCCCCCCEEe
Confidence            99999999999999999995 2222222  2345678886  45555 8899999999976653        34 7776

>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*

Probab=99.86  E-value=1.2e-21  Score=195.55  Aligned_cols=232  Identities=19%  Similarity=0.346  Sum_probs=163.5

Q ss_pred             CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHH
Q 012808           79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH  156 (456)
Q Consensus        79 ~~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~  156 (456)
                      ++.++|+||||+.+.+  .++++++.|...  .+.++|+|+++ |+..+.+++                           
T Consensus        47 ~~~~iViK~GGsv~~~--~~~~~~~dI~~l~~~G~~~VvVHGg-G~~i~~~l~---------------------------   96 (307)
T 3zzh_A           47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLHGT-GPQVNGRLE---------------------------   96 (307)
T ss_dssp             CSCCEEEEECHHHHHH--SHHHHHHHHHHHHHBTCCEEEEECC-HHHHHHHHH---------------------------
T ss_pred             CCCEEEEEEChHHhhc--hHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHH---------------------------
Confidence            4568999999986653  478888887753  24566666654 555555543                           


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec-
Q 012808          157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-  234 (456)
Q Consensus       157 ~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~-  234 (456)
                          +++++++           +.+|++++   +++..+.+ ..+| .+|..| .+.|++.|++|+++++   ++++.+ 
T Consensus        97 ----~~gi~~~-----------~~~G~RvT---d~~~l~vv~m~~~-~vn~~l-v~~L~~~G~~Av~l~g---g~~~a~~  153 (307)
T 3zzh_A           97 ----AQGIEPD-----------YIDGIRIT---DEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITS---GVFTADY  153 (307)
T ss_dssp             ----HTTCCCC-----------EETTEECB---CHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECS---SSEEEEE
T ss_pred             ----HcCCCcc-----------ccCCeecC---CHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeeEEcC---CcEEEEe
Confidence                2233221           33454433   45666766 4567 578776 4679999999999987   345554 


Q ss_pred             ----CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecC
Q 012808          235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV  309 (456)
Q Consensus       235 ----~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV  309 (456)
                          +|+. +++...+...+...     ++.|.|||++|+ |.+ .+|++++++   +|++|+.+|.+|+|++++|+|||
T Consensus       154 ~~~~d~g~~G~i~~v~~~~i~~l-----L~~g~IpVi~~~-g~~-~~G~~~~i~---~D~~A~~lA~~L~Ad~Li~lTdV  223 (307)
T 3zzh_A          154 LDKDKYKLVGNIKSVTKEPIEAS-----IKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK  223 (307)
T ss_dssp             SCHHHHBSBEEEEEECCHHHHHH-----HHHTCEEEECCC-EEC-TTCBEEBCC---HHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCccccCccccccccCHHHHHHH-----HHCCCEEEEeCC-eEC-CCCcEEecC---HHHHHHHHHHhCCCCEEEEEeCC
Confidence                3442 46666666555543     467899999996 766 478888887   99999999999999999999999


Q ss_pred             CccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHH--HHHHHHhC---CCCEEEecC-------CCCCCCceE
Q 012808          310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNS-------YNPNAPGTL  374 (456)
Q Consensus       310 ~GV~taDP~~v~~Ak~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~-------~~p~~~GT~  374 (456)
                      ||||++     |++++|++++++| +.++...|  ...|.|+  +++-|.+.   +.++.|.+.       |..+..||+
T Consensus       224 ~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~  298 (307)
T 3zzh_A          224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM  298 (307)
T ss_dssp             CSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEE
T ss_pred             cceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEE
Confidence            999986     5789999999976 56776543  3577887  33444443   789999873       223567999


Q ss_pred             Eeec
Q 012808          375 IRRS  378 (456)
Q Consensus       375 I~~~  378 (456)
                      |.+.
T Consensus       299 I~~~  302 (307)
T 3zzh_A          299 IRRG  302 (307)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9864

>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*

Probab=99.85  E-value=5.1e-21  Score=200.80  Aligned_cols=233  Identities=18%  Similarity=0.141  Sum_probs=162.7

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .++|+||||+++.+++ +.++++.|.... .+..+|+|+++|..++.+++..                            
T Consensus        44 ~~iViK~GG~~l~~~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~----------------------------   94 (456)
T 3d2m_A           44 TTLVAGIDGRLLEGGT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQ----------------------------   94 (456)
T ss_dssp             CEEEEEECGGGGTSTH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTT----------------------------
T ss_pred             CEEEEEEChHHhcCch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHC----------------------------
Confidence            4699999999999876 788888877542 2334556666776666554311                            


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCce----EEecccceeEEeec
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKA----RQYDAFDIGFITTD  234 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a----~~ld~~~~~iit~~  234 (456)
                         +....           +.+|++   -.++...+.+ .+.| .++..+ .+.|+ .|+++    +.+++.+.++++..
T Consensus        95 ---~~~~~-----------~~~g~r---~t~~~~l~~~~~~~G-~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~~  154 (456)
T 3d2m_A           95 ---GRTPH-----------YCRGLR---VTDETSLGQAQQFAG-TVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTAR  154 (456)
T ss_dssp             ---TCCCC-----------CGGGCC---CBCHHHHHHHHHHHH-HHHHHH-HHHHH-TC--------CCCEECCSCEEEE
T ss_pred             ---CCCCE-----------eeCCee---cCCHHHHHHHHHHHh-HHHHHH-HHHHh-cccccCCCccceeeccCcEEEEE
Confidence               11110           112222   1234555555 3346 556665 45677 99988    88888777777765


Q ss_pred             CC--------CC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808          235 DF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV  305 (456)
Q Consensus       235 ~~--------~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i  305 (456)
                      ..        +. .++...+...+.+     +++.|.|||++++ +.+ .+|+..+++   +|++|+.+|.+|+|+.++|
T Consensus       155 ~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~ipIi~~~-~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li~  224 (456)
T 3d2m_A          155 PIGVIDGTDMEYAGVIRKTDTAALRF-----QLDAGNIVWMPPL-GHS-YGGKTFNLD---MVQAAASVAVSLQAEKLVY  224 (456)
T ss_dssp             ECCEETTEECBTBEEEEEECHHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCSEEEE
T ss_pred             EcccccCcccCceeeEEEECHHHHHH-----HHHCCCeEEECCc-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEE
Confidence            43        22 2333344433332     4678999999985 555 478888886   9999999999999999999


Q ss_pred             eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchH--HHHHHHHhCCCC-EEEecCCCC----------CCCc
Q 012808          306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHP--QSMRPAREGDIP-VRVKNSYNP----------NAPG  372 (456)
Q Consensus       306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp--~a~~~a~~~~Ip-v~I~n~~~p----------~~~G  372 (456)
                      +|||||||++      ++++|++++++|+.+++..|...|.|  +++..+.++|++ ++|.|+..|          +..|
T Consensus       225 lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~G  298 (456)
T 3d2m_A          225 LTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIG  298 (456)
T ss_dssp             EESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSS
T ss_pred             EECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCc
Confidence            9999999986      58899999999999998888788999  488889999996 999987554          3579


Q ss_pred             eEEeec
Q 012808          373 TLIRRS  378 (456)
Q Consensus       373 T~I~~~  378 (456)
                      |+|.++
T Consensus       299 T~i~~~  304 (456)
T 3d2m_A          299 TSIAKE  304 (456)
T ss_dssp             EEEECC
T ss_pred             eeeecc
Confidence            999764

>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=99.84  E-value=5.9e-21  Score=191.68  Aligned_cols=234  Identities=14%  Similarity=0.139  Sum_probs=153.8

Q ss_pred             ceEEEEeCccccC--CH--------HHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHH
Q 012808           81 LTCVMKFGGSSLA--SA--------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS  149 (456)
Q Consensus        81 ~~~V~KFGGsSv~--s~--------~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~  149 (456)
                      +++|+||||+++.  +.        +.++++++.|.... ....+|+||++|...+.+++...                 
T Consensus         5 ~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~-----------------   67 (316)
T 2e9y_A            5 RLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFE-----------------   67 (316)
T ss_dssp             CEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHH-----------------
T ss_pred             CEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcC-----------------
Confidence            5799999999999  64        68888998887643 23457777888887776554211                 


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-----HhhhHHHHHHHHHHHHHHcCCce----
Q 012808          150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-----VSFGECMSTRIFAAYLNKIGVKA----  220 (456)
Q Consensus       150 ~i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-----~s~GE~lsa~lla~~L~~~Gi~a----  220 (456)
                                    ....                    ..++...|.+     ...|..++ ..+...|.+.|+++    
T Consensus        68 --------------~~~~--------------------~t~~~~l~~~~~~~~G~i~~~l~-~~l~~~l~~~g~~a~~~~  112 (316)
T 2e9y_A           68 --------------ALPP--------------------ERPRQPLYIATAMTQAWIGLLLK-HSLEEELRRRGLNVLVPV  112 (316)
T ss_dssp             --------------TSCT--------------------TSCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCCCCE
T ss_pred             --------------CCCC--------------------CCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhcCCCccccc
Confidence                          0000                    0011222222     23343466 46778899999997    


Q ss_pred             ----EEecccce----------eEEee---c----CCC-----C-----cc-------eeecchHHHHHHHhhccccCCc
Q 012808          221 ----RQYDAFDI----------GFITT---D----DFT-----N-----AD-------ILEATYPAVAKRLHGDWITDLA  262 (456)
Q Consensus       221 ----~~ld~~~~----------~iit~---~----~~~-----~-----a~-------i~~~~~~~i~~~l~~~ll~~~~  262 (456)
                          +.+++.+.          ++++.   +    +++     +     -+       +...+...+.     .+++.|.
T Consensus       113 v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~-----~lL~~g~  187 (316)
T 2e9y_A          113 VISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIA-----EASAESP  187 (316)
T ss_dssp             ECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHH-----HHHHHCS
T ss_pred             eeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHH-----HHHHCCC
Confidence                67777663          12210   0    011     1     00       1112333232     2456789


Q ss_pred             eEEEcCCCcCC---CCCCce----eeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHH
Q 012808          263 IPIVTGFLGKA---WRTCAI----TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA  335 (456)
Q Consensus       263 VpVv~Gfig~~---~~~G~v----ttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~  335 (456)
                      |||++|+.|..   .++|..    .++   ++|++|+.+|.+|+||.|+|+|||||||+ ||+ .|++++|++++++|+.
T Consensus       188 IpI~~g~~g~pv~~~~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~e~~  262 (316)
T 2e9y_A          188 AVVALGGGGVPVVERPGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAASELK  262 (316)
T ss_dssp             EEEECGGGCEEEEECTTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHHHHH
T ss_pred             EEEEECCCCCCeeECCCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHHHHH
Confidence            99999865432   134522    222   59999999999999999999999999999 895 7999999999999999


Q ss_pred             HHHHcC---CCcchHH--HHHHHHhCCC-CEEEecC------CCCCCCceEEee
Q 012808          336 ELAYFG---AQVLHPQ--SMRPAREGDI-PVRVKNS------YNPNAPGTLIRR  377 (456)
Q Consensus       336 eLa~~G---a~vlhp~--a~~~a~~~~I-pv~I~n~------~~p~~~GT~I~~  377 (456)
                      +++..|   ...|.|+  ++..+.++++ +++|.|.      +.. ..||+|.+
T Consensus       263 ~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~  315 (316)
T 2e9y_A          263 KYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML  315 (316)
T ss_dssp             HHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence            998743   3557776  6667778899 8999762      122 46899864

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*

Probab=99.83  E-value=4e-20  Score=185.16  Aligned_cols=115  Identities=17%  Similarity=0.177  Sum_probs=90.3

Q ss_pred             cccCCceEEEcCCCcCCC-C---CCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808          257 WITDLAIPIVTGFLGKAW-R---TCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD  332 (456)
Q Consensus       257 ll~~~~VpVv~Gfig~~~-~---~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~  332 (456)
                      +++.|.|||++||.|... .   .|+..++   .+|++|+.+|.+|+||+++|+|||||||+ || .+|++++|++++++
T Consensus       178 lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~  252 (310)
T 2we5_A          178 LIKNDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVA  252 (310)
T ss_dssp             HHHTTCEEECCGGGCEEEETTTTEECCCCC---CHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHH
T ss_pred             HHHCCCEEEEECCCCCCCcCCCCCCcEeec---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHH
Confidence            467899999998866432 1   2233323   49999999999999999999999999999 88 48999999999999


Q ss_pred             HHHHHHHcC---CCcchHH--HHHHHHhCCC--CEEEec------CCCCCCCceEEe
Q 012808          333 EAAELAYFG---AQVLHPQ--SMRPAREGDI--PVRVKN------SYNPNAPGTLIR  376 (456)
Q Consensus       333 Ea~eLa~~G---a~vlhp~--a~~~a~~~~I--pv~I~n------~~~p~~~GT~I~  376 (456)
                      |+.++...|   ...|.|+  ++..+.++|+  +++|.|      .+..+..||+|.
T Consensus       253 e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~  309 (310)
T 2we5_A          253 ELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT  309 (310)
T ss_dssp             HHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred             HHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence            999997754   3567776  6777788888  899975      233345788885

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*

Probab=99.83  E-value=4.2e-20  Score=181.22  Aligned_cols=148  Identities=16%  Similarity=0.092  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeec
Q 012808          203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL  282 (456)
Q Consensus       203 ~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttl  282 (456)
                      .+++. +.++|+++|+++.++++.++++.+..       ...+...+..     +++.+.|||++||++.+ .+|.+.  
T Consensus        98 ~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g-------~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~g~~~--  161 (266)
T 3k4o_A           98 RFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDK-------LIFDTSAIKE-----MLKRNLVPVIHGDIVID-DKNGYR--  161 (266)
T ss_dssp             HHHHH-HHHHHHTTTCCEEEECGGGTCEESSS-------CBCCCHHHHH-----HHHTTCEEEEECEEEEE-SSSCEE--
T ss_pred             HHHHH-HHHHHHHCCCcEEEeeHHHcCcccCc-------eEecHHHHHH-----HHHCCCEEEEeCCEEEc-CCCCee--
Confidence            47777 57789999999999999887665432       1112232332     35789999999988877 356654  


Q ss_pred             cCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchHH--HHHH
Q 012808          283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHPQ--SMRP  352 (456)
Q Consensus       283 gRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~--------~Ga~vlhp~--a~~~  352 (456)
                       ++++|++|+.+|.+|+|+++++|||||||| +||++      +++++.+|+.++..        ++...|.|+  ++..
T Consensus       162 -~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~  233 (266)
T 3k4o_A          162 -IISGDDIVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRK  233 (266)
T ss_dssp             -EECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHH
T ss_pred             -eeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHH
Confidence             445999999999999999999999999999 88865      45555444444432        234458887  3333


Q ss_pred             HHhCCCCEEEecCCCCC---------CCceEEee
Q 012808          353 AREGDIPVRVKNSYNPN---------APGTLIRR  377 (456)
Q Consensus       353 a~~~~Ipv~I~n~~~p~---------~~GT~I~~  377 (456)
                      +.+   +++|.|+..|+         ..||+|.+
T Consensus       234 a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~  264 (266)
T 3k4o_A          234 NKC---RGFVFNGNKANNIYKALLGEVEGTEIDF  264 (266)
T ss_dssp             TTC---EEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             Hhc---CEEEEeCCCccHHHHHhCCCCCceEEEe
Confidence            333   99999987663         57999976

>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*

Probab=99.82  E-value=2.2e-20  Score=195.54  Aligned_cols=231  Identities=19%  Similarity=0.340  Sum_probs=164.3

Q ss_pred             cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHH
Q 012808           80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR  157 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~  157 (456)
                      +.++|+|+||+.+.+  .++++++.|...  .+.++|||+ ++|...+.+++                            
T Consensus        48 ~~~iVIK~GGsv~~~--~l~~la~dI~~l~~~G~~~VvVH-GgG~~i~~~l~----------------------------   96 (464)
T 4ab7_A           48 QQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLH-GTGPQVNGRLE----------------------------   96 (464)
T ss_dssp             -CCEEEEECHHHHHH--CHHHHHHHHHHHHHTTCCCEEEE-CCCHHHHHHHH----------------------------
T ss_pred             CceEEEEECHHHhhc--hHHHHHHHHHHHHHCCCeEEEEE-CCcHHHHHHHH----------------------------
Confidence            467999999997754  377888877643  245666555 66777766654                            


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec--
Q 012808          158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD--  234 (456)
Q Consensus       158 ~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~--  234 (456)
                         .+++++.           +.+|++++   ++.+.+.+ +.+| .+|..| ...|++.|++|+++++   |+++.+  
T Consensus        97 ---~~gi~~~-----------f~~G~RvT---d~~tl~vv~mv~~-~vn~~l-v~~L~~~G~~Avglsg---g~~~a~~~  154 (464)
T 4ab7_A           97 ---AQGIEPD-----------YIDGIRIT---DEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITS---GVFTADYL  154 (464)
T ss_dssp             ---HTTCCCC-----------EETTEECB---CHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECS---SSEEEEES
T ss_pred             ---HcCCCcc-----------ccCCeecC---CHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeEEECC---CcEEEEec
Confidence               2233321           34555543   45555555 3456 578775 5679999999999986   355554  


Q ss_pred             ---CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       235 ---~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                         +++. +++...+...+..     +++.|.|||++|+ |.+ .+|++++++   +|++|+.+|.+|+|++++++|||+
T Consensus       155 ~~~d~g~vG~I~~v~~~~I~~-----lL~~G~IPVi~~~-g~~-~~G~~~ni~---~D~~Aa~lA~~L~Ad~Li~lTdV~  224 (464)
T 4ab7_A          155 DKDKYKLVGNIKSVTKEPIEA-----SIKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEKG  224 (464)
T ss_dssp             CTTTTBSBEEEEEECCHHHHH-----HHHTTCEEEEESE-EEC-TTCBEEECC---HHHHHHHHHHHHCCSEEEEEESSC
T ss_pred             CccccCCcCcccccCHHHHHH-----HHHCCcEEEEcCC-cCC-CCCCEEEec---HHHHHHHHHHHcCCCEEEEEeccc
Confidence               3453 4666666655544     3568999999996 766 479988887   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHH--HHHHHHhC---CCCEEEecC-------CCCCCCceEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNS-------YNPNAPGTLI  375 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~-------~~p~~~GT~I  375 (456)
                      |||++     |++++|++++++| +.+|...|  ...|.|+  +++-|.+.   +.++.|.+.       +..+..||+|
T Consensus       225 GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~I  299 (464)
T 4ab7_A          225 GIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMI  299 (464)
T ss_dssp             SEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEEE
T ss_pred             ccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEecChHHHHHHhcCCCCceEE
Confidence            99986     5789999999986 56676543  4568887  45556554   788998873       2345689999


Q ss_pred             eec
Q 012808          376 RRS  378 (456)
Q Consensus       376 ~~~  378 (456)
                      .+.
T Consensus       300 ~~~  302 (464)
T 4ab7_A          300 RRG  302 (464)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            875

>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*

Probab=99.81  E-value=7.9e-20  Score=191.53  Aligned_cols=234  Identities=13%  Similarity=0.184  Sum_probs=160.7

Q ss_pred             CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHH
Q 012808           79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH  156 (456)
Q Consensus        79 ~~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~  156 (456)
                      .+.++|+||||+.+.  +.++++++.|...  .+.++|||++|+..+++.|.+.                          
T Consensus        57 ~~~~iViK~GGsv~~--~~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~--------------------------  108 (460)
T 3s6g_A           57 QERFAVIKVGGAVIQ--DDLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAA--------------------------  108 (460)
T ss_dssp             GGGSEEEEECHHHHH--HCHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHH--------------------------
T ss_pred             CCCEEEEEEChHHhh--hHHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHc--------------------------
Confidence            357899999998544  3478888888753  2567888887644444433332                          


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccce--eEEee
Q 012808          157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITT  233 (456)
Q Consensus       157 ~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~--~iit~  233 (456)
                            ++++.           +.+|++++.+   +..+.+ ..+| .+|..|++ +|++.|++|+.+.+..+  ..++.
T Consensus       109 ------gi~~~-----------f~~G~RvTd~---~~l~vv~~~lg-~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~~  166 (460)
T 3s6g_A          109 ------DIPTE-----------RVDGLRVTRD---EAMPIIRDTLT-QANLALVD-AIRDAGGRAAAVPRGVFEADIVDA  166 (460)
T ss_dssp             ------SCCCC-----------CCSSSCCBCT---TTHHHHHHHHH-HHHHHHHH-HHHHTTCCEEEECSSSEEEEESCT
T ss_pred             ------CCCcc-----------ccCCccCCCH---HHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEecCeEEEEEecC
Confidence                  22221           3345554433   333433 3346 78988876 79999999999998432  11111


Q ss_pred             cCCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          234 DDFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       234 ~~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                      .+|+. +++...+...+..     +++.|.|||++++ |.+ .+|++.+++   +|++|+.+|.+|+|++++++|||+||
T Consensus       167 ~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p~-g~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv  236 (460)
T 3s6g_A          167 DKLGRVGEPRHIHLDLVGS-----AARAGQAAILACL-GET-PDGTLVNIN---ADVAVRALVHALQPYKVVFLTGTGGL  236 (460)
T ss_dssp             TTTBSEEEEEEECCHHHHH-----HHHTTCEEEEECE-EEC-TTCCEEEEC---HHHHHHHHHHHHCCSEEEEECSSCSC
T ss_pred             cccCccCcceEEcHHHHHH-----HHHCCcEEEEECc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            24553 4666666655544     3568999999985 666 478888887   99999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccCHH-HHHHHHHcC--CCcchHH--HHHHHHhCCCCEEEecCCCC----------CCCceEEee
Q 012808          313 LTCDPNIHPHAKPVPYLTFD-EAAELAYFG--AQVLHPQ--SMRPAREGDIPVRVKNSYNP----------NAPGTLIRR  377 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls~~-Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ipv~I~n~~~p----------~~~GT~I~~  377 (456)
                      |+.      ++++|++++.+ |+.+|...|  ...|.|+  ++..+.+...++++.+...|          +..||+|.+
T Consensus       237 ~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~  310 (460)
T 3s6g_A          237 LDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRR  310 (460)
T ss_dssp             BCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEEC
T ss_pred             cCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEc
Confidence            984      47899999996 888887653  3467776  55566663324666655443          457999987


Q ss_pred             c
Q 012808          378 S  378 (456)
Q Consensus       378 ~  378 (456)
                      .
T Consensus       311 ~  311 (460)
T 3s6g_A          311 G  311 (460)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}

Probab=99.74  E-value=1.8e-19  Score=188.96  Aligned_cols=234  Identities=17%  Similarity=0.272  Sum_probs=158.6

Q ss_pred             CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHH
Q 012808           79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH  156 (456)
Q Consensus        79 ~~~~~V~KFGGsSv~s~~~~~~va~iI~~~--~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~  156 (456)
                      .+.++|+||||+.+.+  .++.+++.|...  .+.++|||++|+. .++.+++.                          
T Consensus        60 ~~~~iViK~GG~v~~~--~l~~va~dI~~l~~~G~~~VvVHGgg~-~i~~~l~~--------------------------  110 (467)
T 3s6k_A           60 AKRFAVVKVGGAVLRD--DLEALTSSLSFLQEVGLTPIVLHGAGP-QLDAELSA--------------------------  110 (467)
T ss_dssp             STTSCCCCCCHHHHTT--CCHHHHHHHHHHHTTSCCCCCCCCCCH-HHHHHHHT--------------------------
T ss_pred             CCcEEEEEEChHHhhh--HHHHHHHHHHHHHHCCCcEEEEECCCh-HHHHHHHH--------------------------
Confidence            3577999999996554  367888877643  3457777777644 44444431                          


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccce--eEEee
Q 012808          157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITT  233 (456)
Q Consensus       157 ~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~-s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~--~iit~  233 (456)
                           +++++.           +.+|+++   .+++..+.+. .+| .+|..|++ +|++.|++|+.+.+..+  ..++.
T Consensus       111 -----~gi~~~-----------f~~G~Rv---Td~~~l~vv~~~~g-~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~~  169 (467)
T 3s6k_A          111 -----AGIEKQ-----------TVNGLRV---TSPHALAIVRKVFQ-ASNLKLVE-ALQQNGARATSITGGVFEAEYLNR  169 (467)
T ss_dssp             -----TSCCCC-----------CCSSSCC---BCHHHHHHHHHHHH-HHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSCS
T ss_pred             -----cCCCcc-----------ccCCccC---CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEcCccEEEEeccC
Confidence                 222211           2334332   2456666663 467 88998876 79999999999987432  12222


Q ss_pred             cCCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          234 DDFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       234 ~~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                      .+|+. +++...+...+..     +++.|.|||+++ +|.+ .+|+.++++   +|++|+.+|.+|+|++++|+|||+||
T Consensus       170 ~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p-vg~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv  239 (467)
T 3s6k_A          170 DTYGLVGEVKAVNLAPIEA-----SLQAGSIPVITS-LGET-PSGQILNVN---ADFAANELVQELQPYKIIFLTGTGGL  239 (467)
T ss_dssp             SSSBSBBCCCCBCCHHHHT-----HHHHTCBCCCCS-CCCC-SSSCCCBCC---HHHHHHHHHHHHCCSSCCCCCSSCSC
T ss_pred             cccCccceEEEEcHHHHHH-----HHHCCCEEEEEC-ceEC-CCCcEEecC---HHHHHHHHHHhcCCCEEEEEecccce
Confidence            35553 4665556554443     356789999984 3434 368888776   99999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccCHH-HHHHHHHc--CCCcchHH--HHHHHHhCCCCEEEecCCCCC----------CCceEEee
Q 012808          313 LTCDPNIHPHAKPVPYLTFD-EAAELAYF--GAQVLHPQ--SMRPAREGDIPVRVKNSYNPN----------APGTLIRR  377 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls~~-Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I~~  377 (456)
                      |+.|      +++|++++.. |+.++...  +...|.|+  ++..+.+...++++.+...|+          ..||+|.+
T Consensus       240 ~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~  313 (467)
T 3s6k_A          240 LDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRR  313 (467)
T ss_dssp             CCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCC
T ss_pred             eCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeC
Confidence            9853      6789999985 77777754  34577776  566666643357777765553          46999986


Q ss_pred             c
Q 012808          378 S  378 (456)
Q Consensus       378 ~  378 (456)
                      .
T Consensus       314 ~  314 (467)
T 3s6k_A          314 G  314 (467)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}

Probab=99.60  E-value=6.5e-15  Score=148.29  Aligned_cols=115  Identities=15%  Similarity=0.081  Sum_probs=82.1

Q ss_pred             cccCCceEEEcCC--CcCCC----CCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccC
Q 012808          257 WITDLAIPIVTGF--LGKAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT  330 (456)
Q Consensus       257 ll~~~~VpVv~Gf--ig~~~----~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls  330 (456)
                      +++++.|||..|.  ++...    .+|...+   +..|++|+.+|.+|+||.++|+|||||||+.+|+  |++++|+++|
T Consensus       199 L~~~g~Ivi~~ggggipv~~~~~~~~G~~~v---id~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~it  273 (332)
T 4axs_A          199 NVNNGCVCIVGGGGGIPTIIQDNQYIGVDGV---IDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKTVD  273 (332)
T ss_dssp             HHHTTCEEECCGGGCEEEEESSSCEEECSSC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSSCB
T ss_pred             hhcCCeEEEecccCCCCccccCCcccCceee---echHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcccCC
Confidence            4567888776542  11110    0122222   3489999999999999999999999999998886  8899999999


Q ss_pred             HHHHHHHHHcC---CCcchHH--HHHHHHhCCC--CEEEecCCCC-----CCCceEEe
Q 012808          331 FDEAAELAYFG---AQVLHPQ--SMRPAREGDI--PVRVKNSYNP-----NAPGTLIR  376 (456)
Q Consensus       331 ~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~I--pv~I~n~~~p-----~~~GT~I~  376 (456)
                      .+|+.++...|   ...|-||  |+..+.+.+.  +..|.+..+.     ...||+|.
T Consensus       274 ~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv  331 (332)
T 4axs_A          274 VKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII  331 (332)
T ss_dssp             HHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred             HHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence            99999998754   4569997  5555666654  5667553221     13699986

>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}

Probab=99.59  E-value=1.2e-14  Score=144.72  Aligned_cols=120  Identities=17%  Similarity=0.158  Sum_probs=91.8

Q ss_pred             ccccCCceEEEcCCCcCC--CCCCcee-eccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHH
Q 012808          256 DWITDLAIPIVTGFLGKA--WRTCAIT-TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD  332 (456)
Q Consensus       256 ~ll~~~~VpVv~Gfig~~--~~~G~vt-tlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~  332 (456)
                      .|++.|.|||++||.|..  .+++..+ +...+++|++|+.+|.+|+||.|+|+|||||||+ ||+ .|++++|++++++
T Consensus       183 ~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it~~  260 (317)
T 3kzf_A          183 TLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIKLS  260 (317)
T ss_dssp             HHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEEHH
T ss_pred             HHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcCHH
Confidence            356789999999877752  1234443 3446779999999999999999999999999999 999 5999999999999


Q ss_pred             HHHHHHHcC---CCcchHH--H-HHHHHhCCCCEEEecCCCC-----CCCceEEee
Q 012808          333 EAAELAYFG---AQVLHPQ--S-MRPAREGDIPVRVKNSYNP-----NAPGTLIRR  377 (456)
Q Consensus       333 Ea~eLa~~G---a~vlhp~--a-~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~  377 (456)
                      |+.++...|   ...|.|+  + ++.+...+.+++|.|..+.     ...||+|.+
T Consensus       261 e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~~GT~I~~  316 (317)
T 3kzf_A          261 EILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIK  316 (317)
T ss_dssp             HHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTSSSEEEEC
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCCCCeEEec
Confidence            999997643   3568887  4 4444556778999886321     126999875

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=99.11  E-value=3.7e-10  Score=103.86  Aligned_cols=105  Identities=16%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             CcchHHHHHHHHhCCC--CEEEecCCCCCCCceEEeeccC--------------CccceeeEEEEecCeEEEEEEeCCCC
Q 012808          343 QVLHPQSMRPAREGDI--PVRVKNSYNPNAPGTLIRRSRD--------------MSKAVLTSIVLKRNVTMLDIVSTRML  406 (456)
Q Consensus       343 ~vlhp~a~~~a~~~~I--pv~I~n~~~p~~~GT~I~~~~~--------------~~~~~i~~I~~~~nvalIsv~g~~m~  406 (456)
                      ..+-.+-++++.++||  ++.+.|+++|+..+|.|+-.-.              ......+.+...+++++|+++|.+|.
T Consensus        27 ~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~  106 (178)
T 2dtj_A           27 PGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK  106 (178)
T ss_dssp             TTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCT
T ss_pred             ccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcc
Confidence            3444567788899995  5677788877766677752210              00112457888999999999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       407 ~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +.||+++++|++|+++||||.|+++||.+|+|+|+.+|...
T Consensus       107 ~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV~~~d~~~  147 (178)
T 2dtj_A          107 SHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDLDA  147 (178)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHH
T ss_pred             cCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHHHH
Confidence            99999999999999999999999999999999999887654

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=98.99  E-value=6.3e-10  Score=100.19  Aligned_cols=71  Identities=32%  Similarity=0.491  Sum_probs=62.0

Q ss_pred             CccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCcHHHHh
Q 012808          381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQ  452 (456)
Q Consensus       381 ~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~~~l~~  452 (456)
                      +.+..|++|+.++|+++|+|.|.+|.+.||+++++|++|+++||||+||++|+.+|+|+|++++ .-.++++
T Consensus         4 ~~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s~~~Isf~v~~~~-~~~~il~   74 (157)
T 3mah_A            4 TEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDK-NLPDIVR   74 (157)
T ss_dssp             ---CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECCSSEEEEEESCCT-THHHHHH
T ss_pred             CCCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEecCCEEEEEECChH-HHHHHHH
Confidence            3456799999999999999999999999999999999999999999999999999999999877 3344443

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=98.99  E-value=1.2e-09  Score=102.48  Aligned_cols=62  Identities=15%  Similarity=0.371  Sum_probs=58.8

Q ss_pred             eeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       386 i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ...+.+++++++|+++|.||.+.||+++|+|++|++.||||.||++||.+||++|+++|...
T Consensus       106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~~~  167 (200)
T 4go7_X          106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDK  167 (200)
T ss_dssp             CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHH
T ss_pred             eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999988754

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=98.79  E-value=1.2e-08  Score=94.19  Aligned_cols=105  Identities=13%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             CcchHHHHHHHHhCCCCEEEecCCCCCC-Cc-eEEe---eccCCcc-----------ceeeEEEEecCeEEEEEEeCCCC
Q 012808          343 QVLHPQSMRPAREGDIPVRVKNSYNPNA-PG-TLIR---RSRDMSK-----------AVLTSIVLKRNVTMLDIVSTRML  406 (456)
Q Consensus       343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~-~G-T~I~---~~~~~~~-----------~~i~~I~~~~nvalIsv~g~~m~  406 (456)
                      ..+..+-+..+.++||++.......++. .| +.|+   +..+..+           .....|.+++++++|+++|.+|.
T Consensus        28 ~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~gm~  107 (181)
T 3s1t_A           28 PGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMR  107 (181)
T ss_dssp             TTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEECCT
T ss_pred             cCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEecccc
Confidence            4445566777888888766543322321 22 2333   2211010           02357888999999999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       407 ~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +.||+++++|++|+++||||.||++|+.+||++|+++|...
T Consensus       108 ~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~  148 (181)
T 3s1t_A          108 SHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDK  148 (181)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHH
T ss_pred             cCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHH
Confidence            99999999999999999999999999999999999988654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=98.78  E-value=1.6e-08  Score=91.87  Aligned_cols=103  Identities=22%  Similarity=0.258  Sum_probs=75.1

Q ss_pred             cchHHHHHHHHhCCCCEEEecCCCCCCCc-e---EEeeccCC-----------ccceeeEEEEecCeEEEEEEeCCCCCc
Q 012808          344 VLHPQSMRPAREGDIPVRVKNSYNPNAPG-T---LIRRSRDM-----------SKAVLTSIVLKRNVTMLDIVSTRMLGQ  408 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~G-T---~I~~~~~~-----------~~~~i~~I~~~~nvalIsv~g~~m~~~  408 (456)
                      .+-.+-+..+.++||++.......... | +   .+.+..+.           ....++.+..++++++|+++|.+|.+.
T Consensus        38 G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~~  116 (167)
T 2re1_A           38 GVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRSH  116 (167)
T ss_dssp             THHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTTC
T ss_pred             CHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCCC
Confidence            444566777788888766544322211 3 1   22221110           011246788899999999999999999


Q ss_pred             hhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          409 YGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       409 ~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ||+++++|++|+++||||.++++|+.+|+++|+.+|...
T Consensus       117 ~Gv~a~i~~aL~~~~InI~~istse~~is~vv~~~d~~~  155 (167)
T 2re1_A          117 VGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYMEL  155 (167)
T ss_dssp             CCHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHH
T ss_pred             cCHHHHHHHHHHHCCCcEEEEEcccCEEEEEEeHHHHHH
Confidence            999999999999999999999999999999999877653

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=98.73  E-value=1.3e-08  Score=92.48  Aligned_cols=60  Identities=22%  Similarity=0.365  Sum_probs=57.0

Q ss_pred             EEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       388 ~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      .+...+++++++++|.+|.+.||+++++|++|+++||||.|+++||.+|+++|+.+|...
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vv~~~d~~~  147 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRISVIIPAEYAEA  147 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHH
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHH
Confidence            677899999999999999999999999999999999999999999999999999988754

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=98.72  E-value=1.4e-08  Score=95.21  Aligned_cols=76  Identities=22%  Similarity=0.362  Sum_probs=58.4

Q ss_pred             CCceEEeeccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-------CCEEEEEEcC
Q 012808          370 APGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDP  442 (456)
Q Consensus       370 ~~GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-------e~sIsi~V~~  442 (456)
                      +.+++|....++.+..|++|++++|+++|+|.|  |.+.||+++++|+.|+++|||||||+++       ...++|+++.
T Consensus        10 ~s~~iv~e~~~mE~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~   87 (200)
T 4go7_X           10 HSSGLVPRGNHMEDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR   87 (200)
T ss_dssp             ----------CCCSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred             ccCceEeCCCccccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence            345677766677778899999999999999986  8999999999999999999999999754       2468899988


Q ss_pred             CCcCc
Q 012808          443 SKLWS  447 (456)
Q Consensus       443 ~d~~~  447 (456)
                      +++..
T Consensus        88 ~d~~~   92 (200)
T 4go7_X           88 DVGPA   92 (200)
T ss_dssp             GGHHH
T ss_pred             hhHHH
Confidence            87654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=98.58  E-value=3.6e-08  Score=89.48  Aligned_cols=68  Identities=18%  Similarity=0.348  Sum_probs=58.5

Q ss_pred             cceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-----CCEEEEEEcCCCcCc-HHHHh
Q 012808          383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWS-RELIQ  452 (456)
Q Consensus       383 ~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-----e~sIsi~V~~~d~~~-~~l~~  452 (456)
                      +..|++|+.++|+++|+|.|  |.+.||+++++|+.|+++||||+||+++     +.+|+|+|+.++... .++++
T Consensus        13 ~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a~~~l~   86 (167)
T 2re1_A           13 RAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILS   86 (167)
T ss_dssp             --CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHHHHHHH
T ss_pred             CCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHHHHHHH
Confidence            44699999999999999998  8899999999999999999999999887     789999999877543 44443

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=98.55  E-value=1.2e-07  Score=87.54  Aligned_cols=68  Identities=24%  Similarity=0.351  Sum_probs=58.7

Q ss_pred             cceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe--CC-----CEEEEEEcCCCcCc-HHHHh
Q 012808          383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SE-----VSLSLTLDPSKLWS-RELIQ  452 (456)
Q Consensus       383 ~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist--Se-----~sIsi~V~~~d~~~-~~l~~  452 (456)
                      +..|++|+.++|+++|+|.+  |.+.||+++++|+.|+++||||+||++  ++     .+|+|+|+.+++.. .++++
T Consensus         4 ~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~   79 (181)
T 3s1t_A            4 DPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLD   79 (181)
T ss_dssp             CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHH
T ss_pred             CCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHH
Confidence            46799999999999999996  899999999999999999999999975  33     48999999988654 44443

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=98.50  E-value=8.9e-08  Score=86.86  Aligned_cols=67  Identities=21%  Similarity=0.379  Sum_probs=58.0

Q ss_pred             ceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-------CCEEEEEEcCCCcCc-HHHHh
Q 012808          384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWS-RELIQ  452 (456)
Q Consensus       384 ~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-------e~sIsi~V~~~d~~~-~~l~~  452 (456)
                      ..|++|++++|+++|++.|  |.+.||+++++|++|+++||||+||+++       +.+|+|+|+.++... .++++
T Consensus         5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~   79 (167)
T 2dt9_A            5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALE   79 (167)
T ss_dssp             CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHH
T ss_pred             CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHH
Confidence            4699999999999999997  7889999999999999999999999876       679999999877643 34443

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=98.46  E-value=1.3e-07  Score=102.26  Aligned_cols=61  Identities=25%  Similarity=0.476  Sum_probs=58.0

Q ss_pred             eEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          387 TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       387 ~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ..+.+++++++|+++|.||.++||+++++|++|+++||||.||++||.+||++|+++|...
T Consensus       519 ~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~  579 (600)
T 3l76_A          519 AAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVD  579 (600)
T ss_dssp             CEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHH
T ss_pred             ceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHH
Confidence            4688999999999999999999999999999999999999999999999999999988754

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=98.42  E-value=6.8e-07  Score=92.69  Aligned_cols=103  Identities=17%  Similarity=0.303  Sum_probs=76.8

Q ss_pred             cchHHHHHHHHhCCCCEEEec--CCCCCCCc-eEEe---eccCCc-----------cceeeEEEEecCeEEEEEEeCCCC
Q 012808          344 VLHPQSMRPAREGDIPVRVKN--SYNPNAPG-TLIR---RSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRML  406 (456)
Q Consensus       344 vlhp~a~~~a~~~~Ipv~I~n--~~~p~~~G-T~I~---~~~~~~-----------~~~i~~I~~~~nvalIsv~g~~m~  406 (456)
                      .+-.+-++.+.+++|.+....  +.+. ..| +.|+   +..+..           .-....+.+.+|+++|+++|.+|.
T Consensus       277 g~~~~If~~La~~~I~vd~I~q~~s~~-~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~  355 (421)
T 3ab4_A          277 GEAAKVFRALADAEINIDMVLQNVFSV-EDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK  355 (421)
T ss_dssp             THHHHHHHHHHHTTCCCEEEEECCCC---CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGT
T ss_pred             cHHHHHHHHHHHcCCcEEEEEccCccc-cCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcc
Confidence            344567788899999877553  3210 023 2332   221110           002346888999999999999999


Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       407 ~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ++||+++++|++|+++||||.|+++||.+||++|+.+|...
T Consensus       356 ~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~~~d~~~  396 (421)
T 3ab4_A          356 SHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDLDA  396 (421)
T ss_dssp             SCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHH
T ss_pred             cCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHHHH
Confidence            99999999999999999999999999999999999998654

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=98.35  E-value=2e-07  Score=83.66  Aligned_cols=60  Identities=15%  Similarity=0.374  Sum_probs=49.9

Q ss_pred             eeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       386 i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      ...+.+.+++++|+++|.+|.+.||+++++|++|+  ||||.||+  +||.+|+|+|+++|...
T Consensus        79 ~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~  140 (157)
T 3mah_A           79 IGDVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKK  140 (157)
T ss_dssp             TEEEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHH
T ss_pred             cCeEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHH
Confidence            35788899999999999999999999999999999  99999999  89999999999988654

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=98.34  E-value=4.8e-07  Score=94.49  Aligned_cols=103  Identities=13%  Similarity=0.188  Sum_probs=78.0

Q ss_pred             CcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCCcc------------ceeeEEEEecCeEEEEEEeCCCCCchh
Q 012808          343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK------------AVLTSIVLKRNVTMLDIVSTRMLGQYG  410 (456)
Q Consensus       343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~------------~~i~~I~~~~nvalIsv~g~~m~~~~g  410 (456)
                      ..+..+-+..+.+++|++...++.. ... |...+..+..+            -....|.+.+++++|+++|.+|.+.||
T Consensus       312 ~g~~~~if~~l~~~~i~vd~i~~~~-~~i-s~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~G  389 (446)
T 3tvi_A          312 VGFCRKILSILEMYGVSFEHMPSGV-DSV-SLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKG  389 (446)
T ss_dssp             TTHHHHHHHHHHTTTCCEEEBCEET-TEE-EEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTT
T ss_pred             HHHHHHHHHHHHHcCCcEEEEecCC-CEE-EEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChh
Confidence            3455677888899999987765321 111 22222211110            013468889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          411 FLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       411 ~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +++++|++|+++||||.||+  +||.+||++|+++|...
T Consensus       390 vaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~  428 (446)
T 3tvi_A          390 IANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEK  428 (446)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHH
Confidence            99999999999999999999  89999999999988754

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=98.32  E-value=4.9e-07  Score=82.91  Aligned_cols=60  Identities=25%  Similarity=0.370  Sum_probs=54.3

Q ss_pred             ceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeC-------CCEEEEEEcCCCc
Q 012808          384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKL  445 (456)
Q Consensus       384 ~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstS-------e~sIsi~V~~~d~  445 (456)
                      ..|++|+.++|+++|+|.+  +.+.||+++++|+.|+++||||+|++++       +.+|+|+++.++.
T Consensus         4 ~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~   70 (178)
T 2dtj_A            4 AVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDG   70 (178)
T ss_dssp             CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHH
T ss_pred             CcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccH
Confidence            4699999999999999986  5789999999999999999999999876       7889999987665

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=98.13  E-value=2.4e-06  Score=90.65  Aligned_cols=103  Identities=13%  Similarity=0.196  Sum_probs=76.7

Q ss_pred             CCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccCC--c-------------cceeeEEEEecCeEEEEEEeCCCC
Q 012808          342 AQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM--S-------------KAVLTSIVLKRNVTMLDIVSTRML  406 (456)
Q Consensus       342 a~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~--~-------------~~~i~~I~~~~nvalIsv~g~~m~  406 (456)
                      ...+-.+-+..+.+++|+|....+... .. |......+.  .             -..+..+.+.+|+++|+++|. |.
T Consensus       354 ~~g~~~~if~~la~~~I~vd~I~sse~-si-s~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~  430 (510)
T 2cdq_A          354 QVGFLAKVFSIFEELGISVDVVATSEV-SI-SLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQ  430 (510)
T ss_dssp             CTTHHHHHHHHHHHTTCCEEEEEEETT-EE-EEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GG
T ss_pred             cccHHHHHHHHHHHcCCcEEEEEeCCC-eE-EEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CC
Confidence            345556788889999999776643211 11 222221110  0             011357888999999999999 99


Q ss_pred             CchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          407 GQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       407 ~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +.||+++++|++|+++||||.||+  +||.+|||+|+++|...
T Consensus       431 ~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~  473 (510)
T 2cdq_A          431 HSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEG  473 (510)
T ss_dssp             GHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHH
T ss_pred             CChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHH
Confidence            999999999999999999999999  79999999999987643

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=97.77  E-value=8.5e-06  Score=85.17  Aligned_cols=60  Identities=12%  Similarity=0.283  Sum_probs=55.0

Q ss_pred             eeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       386 i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +..+.+.+|+++|+++|.+|.+.||+++++|++|++  |||.||+  +||.+|||+|+++|...
T Consensus       377 ~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~~~  438 (449)
T 2j0w_A          377 LCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQ  438 (449)
T ss_dssp             HSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHH
T ss_pred             CCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHHHH
Confidence            456888999999999999999999999999999965  9999999  99999999999998644

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=97.31  E-value=0.00039  Score=60.81  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=47.9

Q ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhCCCcE-EEEEe-CCCEEEEEEcCCCcCc-HHHHhhhc
Q 012808          397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISV-DVVAT-SEVSLSLTLDPSKLWS-RELIQQAS  455 (456)
Q Consensus       397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V-~~Ist-Se~sIsi~V~~~d~~~-~~l~~~~~  455 (456)
                      ..++.|.+|.++||.++++|++|+++|||| .++++ ++..+++.++.+|... .+.+++.+
T Consensus        71 ~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~~g  132 (144)
T 2f06_A           71 ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKK  132 (144)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHTT
T ss_pred             eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHHcC
Confidence            346788789999999999999999999999 55666 8899999998887654 56666543

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=92.62  E-value=0.19  Score=43.36  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=28.7

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEeC---CCE-EEEEE
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVATS---EVS-LSLTL  440 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~IstS---e~s-Isi~V  440 (456)
                      +.+.||.++++|+.|+++||||++++++   +.. +.|++
T Consensus        13 v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~   52 (144)
T 2f06_A           13 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   52 (144)
T ss_dssp             ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe
Confidence            5678999999999999999999999643   224 45664

>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8

Probab=82.58  E-value=4.4  Score=34.97  Aligned_cols=70  Identities=14%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             ceEEeeccCCccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       372 GT~I~~~~~~~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      -|+|.+....    ..++...+....|+|.|..-.+..|+++.+-+.|+++||++..|++-..+.-| |+++++.
T Consensus        43 lSvV~~~~~~----p~~~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSty~tD~Il-Vp~~~~~  112 (134)
T 1zhv_A           43 LSIVCLIDRI----PQDVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLL-VRSNDLE  112 (134)
T ss_dssp             EEEEEEGGGS----CTTSEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEE-EEGGGHH
T ss_pred             EEEEEehhhC----ccCCccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEeccccEEE-EeHHHHH
Confidence            4666654321    12346678889999998766788999999999999999999999988777654 5555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	3e-98
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	2e-71
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	3e-69
d2cdqa2	91	d.58.18.10 (A:329-419) Aspartokinase {Thale cress	4e-17
d2j0wa2	91	d.58.18.10 (A:295-385) Aspartokinase {Escherichia	6e-14
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	4e-12
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	3e-10
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	4e-10
d2hmfa3	100	d.58.18.10 (A:304-403) Aspartokinase {Methanococcu	1e-07
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	1e-06
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	0.001
d2hmfa2	67	d.58.18.10 (A:404-470) Aspartokinase {Methanococcu	2e-04
d2j0wa3	64	d.58.18.10 (A:386-449) Aspartokinase {Escherichia	8e-04

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  294 bits (754), Expect = 3e-98
 Identities = 251/304 (82%), Positives = 278/304 (91%)

Query: 79  KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138
           K +TCVMKFGGSS+ASAERM+EVA+LIL+FP E PVIVLSAMGKTTN LLLAGEKAVSCG
Sbjct: 1   KGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 60

Query: 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV 198
           V+N S I+ELS +K+LH RTV EL ID S+I T+LEELEQLLKGIAM+KELT R+RDYLV
Sbjct: 61  VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLV 120

Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
           SFGEC+STRIFAAYLN IGVKARQYDAF+IGFITTDDFTN DILEATYPAVAKRL+ DW+
Sbjct: 121 SFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWM 180

Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
            D A+PIVTGFLGK W+T A+TTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDP 
Sbjct: 181 HDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPT 240

Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
           I+  A PVPYLTFDEAAELAYFGAQVLHPQSMRPAREG+IPVRVKNSYNP APGT+I ++
Sbjct: 241 IYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKT 300

Query: 379 RDMS 382
           RDM+
Sbjct: 301 RDMT 304

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score =  226 bits (576), Expect = 2e-71
 Identities = 115/309 (37%), Positives = 178/309 (57%), Gaps = 17/309 (5%)

Query: 82  TCVMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGV 139
           T VMKFGG+S+ S ER+R VA+++     E    V+V+SAM + TN L+   ++A+    
Sbjct: 1   TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR- 59

Query: 140 TNISCIDEL-SFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELTP 191
            +I+ + +   F+++ H++ ++E           + II + +EELE++L G+A L ELTP
Sbjct: 60  -DIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTP 118

Query: 192 RSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAK 251
           +SRDY++SFGE +S+ I +  +  +G K+   +  + G IT ++F +A +          
Sbjct: 119 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLL 178

Query: 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
            L  +      I  V            ITTLGRGGSD +A  IG  L    I++W DV G
Sbjct: 179 PLLKE-----GIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSG 233

Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
           V T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E  IP+ VKN++ P + 
Sbjct: 234 VYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESE 293

Query: 372 GTLIRRSRD 380
           GTLI    +
Sbjct: 294 GTLITNDME 302

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score =  220 bits (560), Expect = 3e-69
 Identities = 100/302 (33%), Positives = 151/302 (50%), Gaps = 18/302 (5%)

Query: 84  VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
           V KFGG+S+A  + M   A+++LS  N R ++VLSA    TN L+     A++ G+    
Sbjct: 4   VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPGE 57

Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKG-----IAMLKELTPRSRDYLV 198
             ++L  ++++    ++ L           EE+E+LL+       A     +P   D LV
Sbjct: 58  RFEKLDAIRNIQFAILERLRYPNV----IREEIERLLENITVLAEAAALATSPALTDELV 113

Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
           S GE MST +F   L +  V+A+ +D   +             + A     A +L     
Sbjct: 114 SHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLN 173

Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
               + I  GF+G   +    TTLGRGGSD TA  + +AL    + +W DV G+ T DP 
Sbjct: 174 EG--LVITQGFIGSENKGR-TTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 230

Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
           +   AK +  + F EAAE+A FGA+VLHP ++ PA   DIPV V +S +P A GTL+   
Sbjct: 231 VVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNK 290

Query: 379 RD 380
            +
Sbjct: 291 TE 292

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.0 bits (182), Expect = 4e-17
 Identities = 64/71 (90%), Positives = 68/71 (95%)

Query: 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDP 442
           K++LTSIVLKRNVTMLDI STRMLGQ GFLAKVFS FE+LGISVDVVATSEVS+SLTLDP
Sbjct: 1   KSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDP 60

Query: 443 SKLWSRELIQQ 453
           SKLWSRELIQQ
Sbjct: 61  SKLWSRELIQQ 71

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (159), Expect = 6e-14
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444
           +  ++ L+RN T+L + S  ML   GFLA+VF       ISVD++ TSEVS++LTLD + 
Sbjct: 4   LFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTG 63

Query: 445 L 445
            
Sbjct: 64  S 64

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score = 63.8 bits (154), Expect = 4e-12
 Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 29/230 (12%)

Query: 160 DELGIDRSIIATHLEELEQLLK-----GIAMLKELTPRSRDYLVSFGECMSTRIFAAYLN 214
           D LGID +I+     E+++L++      + +      R    L   G           L 
Sbjct: 21  DGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLA 79

Query: 215 KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW 274
            +       D+     +     +   +                              +  
Sbjct: 80  TVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLRE-----------KRVV 128

Query: 275 RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEA 334
              A T      +D TA   G  +    +     VDGV  CDP  +P AK    L++ E 
Sbjct: 129 IFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEV 188

Query: 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
            +      +V+   +   AR+  +P+RV N   P A          GT I
Sbjct: 189 IDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score = 58.1 bits (139), Expect = 3e-10
 Identities = 41/230 (17%), Positives = 68/230 (29%), Gaps = 29/230 (12%)

Query: 160 DELGIDRSIIATHLEELEQLLK-----GIAMLKELTPRSRDYLVSFGECMSTRIFAAYLN 214
           D  GI+   I   + E+ +++K     GI +      R         +  +         
Sbjct: 20  DPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMAT 79

Query: 215 KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW 274
            +   A +     +G               +   +A+             I     GK  
Sbjct: 80  VMNALALKDAFETLGIK------ARVQSALSMQQIAETYARPKA------IQYLEEGKVV 127

Query: 275 RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEA 334
              A T      +D  A   G  +    +    +VDGV T DP   P A     +TFDEA
Sbjct: 128 IFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEA 187

Query: 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
                   +V+   +    RE  + + V       +          GTL+
Sbjct: 188 LLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 234

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 57.2 bits (137), Expect = 4e-10
 Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 28/223 (12%)

Query: 167 SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF 226
           S+++   E++ +  K I  + +        +V  G+     I +A           Y   
Sbjct: 10  SVLSNESEKIREFAKTIESVAQQ--NQVFVVVGGGKLAREYIKSARELGASETFCDYIGI 67

Query: 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG 286
               +      +A    A    V      +      + ++ G            T     
Sbjct: 68  AATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLYRVVVMGG------------TFPGHT 115

Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQ--- 343
           +D TA  + + +         +VDGV + DP     A     L+  +  E+    +    
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175

Query: 344 ---VLHPQSMRPAREGDIPVRVKNSYNPN--------APGTLI 375
              V+   + +      I   V      N        A GT+I
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVI 218

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSLSL 438
           MS +++ +I   +NV +++I    M+G  G  A++F    +  ++V ++   +SE ++SL
Sbjct: 1   MSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISL 60

Query: 439 TLDPSKL 445
            +    +
Sbjct: 61  VVSEEDV 67

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 15/103 (14%)

Query: 288 DLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHP 347
           D  A  + + L    + V  +VDGV T DP   P AK +  +  +E  E+   G +    
Sbjct: 121 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGS 180

Query: 348 QSM------RPAREGDIPVRVKNSYNPN---------APGTLI 375
            S+      +      I   V    +             GT I
Sbjct: 181 SSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 84  VMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGE 132
           V   GGS L       + ++E+A  +     +  V V+   GK   K +   E
Sbjct: 4   VFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAE 56

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445
           V ++ +V   M G  G   K+F+   + G ++ ++A  +SEV++S  +D   L
Sbjct: 1   VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDL 53

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 7/50 (14%), Positives = 16/50 (32%)

Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445
            ++ ++   +    G   +VF   E   I +     S  +L   +     
Sbjct: 2   ALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDA 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d2cdqa1	304	Aspartokinase {Thale cress (Arabidopsis thaliana)	100.0
d2j0wa1	292	Aspartokinase {Escherichia coli [TaxId: 562]}	100.0
d2hmfa1	302	Aspartokinase {Methanococcus jannaschii [TaxId: 21	100.0
d2brxa1	225	Uridylate kinase PyrH {Pyrococcus furiosus [TaxId:	99.96
d2a1fa1	236	Uridylate kinase PyrH {Haemophilus influenzae [Tax	99.94
d2ij9a1	219	Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax	99.93
d2akoa1	250	Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1	99.91
d1ybda1	236	Uridylate kinase PyrH {Neisseria meningitidis [Tax	99.91
d1z9da1	238	Uridylate kinase PyrH {Streptococcus pyogenes [Tax	99.84
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	99.8
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	99.78
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	99.77
d1e19a_	313	Carbamate kinase {Archaeon Pyrococcus furiosus [Ta	99.58
d1b7ba_	307	Carbamate kinase {Enterococcus faecium [TaxId: 135	99.51
d1gs5a_	258	N-acetyl-l-glutamate kinase {Escherichia coli [Tax	99.51
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.38
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.3
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	99.28
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.03
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	98.72
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	98.68
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	94.91
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	92.77
d1zhva2	66	Hypothetical protein Atu0741 {Agrobacterium tumefa	91.71
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	91.36
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	88.87
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	88.25
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	87.56
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	86.99
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	81.84
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	81.45
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	80.9
d1zvpa2	64	Hypothetical protein VC0802 {Vibrio cholerae [TaxI	80.37

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-76  Score=591.16  Aligned_cols=301  Identities=83%  Similarity=1.264  Sum_probs=280.0

Q ss_pred             cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        80 ~~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .|++|+|||||||+|++++++|+++|++..++++|||||||||+||.|+++++.+.+.+..+....+.|+.++++|..++
T Consensus         2 ~~~~V~KFGGTSv~~~~~i~~v~~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~   81 (304)
T d2cdqa1           2 GITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTV   81 (304)
T ss_dssp             CCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHHHHHHHHHHH
T ss_pred             CCeEEEeeCccccCCHHHHHHHHHHHHhcCCCCcEEEEeCCCCChHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHH
Confidence            47899999999999999999999999987667889999999999999999999988877766777788999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCCc
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA  239 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~a  239 (456)
                      ++|..+.+.+.+.+++|+++++++.++++++++.+|+|+++||+||+.|++++|++.|+++.++|+++++++|+++|+++
T Consensus        82 ~~l~~~~~~~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a  161 (304)
T d2cdqa1          82 KELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNG  161 (304)
T ss_dssp             HHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTC
T ss_pred             HHhccchhHHHHHHHHHHHHHhhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccc
Confidence            99999888899999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCC
Q 012808          240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI  319 (456)
Q Consensus       240 ~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~  319 (456)
                      ++.+.+.....++....+++++.|||++||+|.+.++|+++|||||||||||+++|.+|+|++++||||||||||+|||+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~v~vv~Gfig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~  241 (304)
T d2cdqa1         162 DILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTI  241 (304)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTT
T ss_pred             cccccchhhhHHHHhhhhhccCcEEEeeccccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccc
Confidence            98766655554444444567789999999999864589999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeeccC
Q 012808          320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD  380 (456)
Q Consensus       320 v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~  380 (456)
                      +|+|++|++|||+||+||+++||+||||+|++|+++++|||+|+|+|+|+.+||+|+++.+
T Consensus       242 v~~a~~i~~lsy~EA~ela~~GakvlHp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~~  302 (304)
T d2cdqa1         242 YKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRD  302 (304)
T ss_dssp             CTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCC
T ss_pred             cCCceEcCccCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEEeCCCC
Confidence            9999999999999999999999999999999999999999999999999999999997654

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-71  Score=552.81  Aligned_cols=287  Identities=35%  Similarity=0.504  Sum_probs=252.3

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      .|+|+|||||||+|++++++|+++|.+. ..+++||||||+|+||.|+++++.+.+     .+..+.++.++++|..+++
T Consensus         1 ~~iV~KFGGTSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~gvTd~L~~~~~~~~~-----~~~~~~l~~i~~~h~~~~~   74 (292)
T d2j0wa1           1 EIVVSKFGGTSVADFDAMNRSADIVLSD-ANVRLVVLSASAGITNLLVALAEGLEP-----GERFEKLDAIRNIQFAILE   74 (292)
T ss_dssp             CCEEEEECSGGGSSHHHHHHHHHHHTSC-TTEEEEEECCCTTHHHHHHHHTTCCCH-----HHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEeeCccccCCHHHHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHhhcc-----CCCHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999874 357899999999999999998765433     2345678999999999999


Q ss_pred             HhCCCH---HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCC
Q 012808          161 ELGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT  237 (456)
Q Consensus       161 ~l~~~~---~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~  237 (456)
                      ++..+.   +.|+.++++|+.+++++..  +++++.+|+|+++||+||+.|++++|+++|+++.++|++++ +++++.++
T Consensus        75 ~l~~~~~~~~~l~~~~~~l~~l~~~~~~--~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~-i~t~~~~~  151 (292)
T d2j0wa1          75 RLRYPNVIREEIERLLENITVLAEAAAL--ATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFG  151 (292)
T ss_dssp             TSSSTHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTT
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhhhc--ccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhhe-eecCCccc
Confidence            987654   3577888888888887653  78999999999999999999999999999999999999998 88999999


Q ss_pred             Ccceeecch-HHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCC
Q 012808          238 NADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD  316 (456)
Q Consensus       238 ~a~i~~~~~-~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD  316 (456)
                      ++.+..... .....++.+. .. ..+||+|||+|.+ ++|+++|||||||||||+++|.+|+|++++||||||||||+|
T Consensus       152 ~a~~~~~~~~~~~~~~~~~~-~~-~~i~Vv~GFig~~-~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taD  228 (292)
T d2j0wa1         152 RAEPDIAALAELAALQLLPR-LN-EGLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD  228 (292)
T ss_dssp             SCCBCHHHHHHHHHHHTHHH-HH-HSEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSC
T ss_pred             cccchhhhhhhhhhhhhhhh-hc-ccccccccccccc-cCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeech
Confidence            988754332 2223333322 22 3599999999999 599999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeecc
Q 012808          317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR  379 (456)
Q Consensus       317 P~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~  379 (456)
                      |+++|+|++|++|||+||+||+++||+||||+|++|+++++|||+|+|+|+|+.+||+|+++.
T Consensus       229 P~~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~  291 (292)
T d2j0wa1         229 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKT  291 (292)
T ss_dssp             TTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCC
T ss_pred             hhcCCCceEcceeCHHHHHHHHhCCccccCHHHHHHHHHcCCcEEEeeCCCCCCCCCeEecCC
Confidence            999999999999999999999999999999999999999999999999999999999998754

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.4e-69  Score=539.99  Aligned_cols=291  Identities=41%  Similarity=0.691  Sum_probs=262.6

Q ss_pred             EEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHHH
Q 012808           83 CVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD  160 (456)
Q Consensus        83 ~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  160 (456)
                      .|+|||||||+|+++|++|+++|.+..  +.++|||||||||+||.|+++++.+.... ......+.++.++++|..+++
T Consensus         2 tV~KFGGTSvadae~i~~V~~II~~~~~~~~~~vVVVSA~ggvTn~L~~~~~~a~~~~-~~~~~~~~l~~i~~~h~~~i~   80 (302)
T d2hmfa1           2 TVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR-DIAKVGDFIKFIREKHYKAIE   80 (302)
T ss_dssp             EEEEECTGGGSSHHHHHHHHHHHHHHHHHCSCEEEEECCCTTHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEeCCCCChhHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999997642  35789999999999999999998876642 123355679999999999999


Q ss_pred             HhCCCH-------HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEee
Q 012808          161 ELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT  233 (456)
Q Consensus       161 ~l~~~~-------~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~  233 (456)
                      +|..+.       ..|+.++++|+++++++..+++++++.+|+|+++||+||+.||+.+|+++|+++.++|+++++++++
T Consensus        81 ~l~~~~~~~~~~~~~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~  160 (302)
T d2hmfa1          81 EAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITD  160 (302)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEEC
T ss_pred             HHhccHhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccC
Confidence            998664       2488899999999999999999999999999999999999999999999999999999999989999


Q ss_pred             cCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccc
Q 012808          234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL  313 (456)
Q Consensus       234 ~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~  313 (456)
                      +.++++.+......   +++.+ ++.++.+||+|||+|.+ ++|+++|||||||||||+++|.+|+|+++++||||+|||
T Consensus       161 ~~~~~a~~~~~~~~---~~l~~-~~~~~~v~Vv~GFig~~-~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~  235 (302)
T d2hmfa1         161 NNFGSARVKRLEVK---ERLLP-LLKEGIIPVVTGFIGTT-EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVY  235 (302)
T ss_dssp             SCTTSCCEEEECHH---HHHHH-HHHTTCEEEEESSEEEC-TTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCB
T ss_pred             CccchhhhhhhhhH---HHHHH-HHhcCCeEEeecccccC-CCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchhc
Confidence            99999988654432   22222 24567899999999998 699999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCCCCceEEeecc
Q 012808          314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR  379 (456)
Q Consensus       314 taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~  379 (456)
                      |+||+++|+|+++++|||+||.||+++|++||||+|+.|++++|||++|+|+++|+.+||+|+++.
T Consensus       236 ~~dP~~~~~a~~~~~~~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~v~~~~~~~~~gT~i~~~~  301 (302)
T d2hmfa1         236 TTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDM  301 (302)
T ss_dssp             SSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHTTCCEEEEETTSTTSCCEEEESCC
T ss_pred             cchhhcCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHcCCCEEEeeCCCCCCCCCEEcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999998753

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=5e-30  Score=243.25  Aligned_cols=205  Identities=20%  Similarity=0.259  Sum_probs=152.7

Q ss_pred             ceEEEEeCccccC----CHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLA----SAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH  155 (456)
Q Consensus        81 ~~~V~KFGGsSv~----s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~  155 (456)
                      |.+|+|||||++.    +.+.++++++.|.+..+ .+.+||+| +|..++.+.+                          
T Consensus         1 MrIViKiGGs~l~~~~~~~~~i~~l~~~I~~l~~~~~~viV~g-gG~~~~~~~~--------------------------   53 (225)
T d2brxa1           1 MRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVG-GGKLARKYIE--------------------------   53 (225)
T ss_dssp             CEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEEC-CHHHHHHHHH--------------------------
T ss_pred             CeEEEEeehhhcCCCCCCHHHHHHHHHHHHHHHcCCcEEEEEC-ccHHHHHHHH--------------------------
Confidence            4689999999995    56789999998876543 34455554 5544443322                          


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC
Q 012808          156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD  235 (456)
Q Consensus       156 ~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~  235 (456)
                        .++.++                         .++...|++...++++++.+++..|++.|++...-            
T Consensus        54 --~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------   94 (225)
T d2brxa1          54 --VAEKFN-------------------------SSETFKDFIGIQITRANAMLLIAALREKAYPVVVE------------   94 (225)
T ss_dssp             --HHHTTT-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSCBC------------
T ss_pred             --hhhhcc-------------------------hhhHHHHHhhhhHHHHHHHHHHHHHHhhhcccccc------------
Confidence              122222                         23455677777889999999999999998864211            


Q ss_pred             CCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccC
Q 012808          236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC  315 (456)
Q Consensus       236 ~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta  315 (456)
                               ++.+..+     +++.+.|||+++..+     +       +.+|++|+++|..|+|++|+||||||||||+
T Consensus        95 ---------~~~~~~~-----~l~~~~ipv~~~~~~-----~-------~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~  148 (225)
T d2brxa1          95 ---------DFWEAWK-----AVQLKKIPVMGGTHP-----G-------HTTDAVAALLAEFLKADLLVVITNVDGVYTA  148 (225)
T ss_dssp             ---------SHHHHHH-----HHHTTCBCEECCCST-----T-------CCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred             ---------cHHHHHH-----HHHhcccccccCCCC-----C-------cchhHHHHHHHHHhCchhhhhhhhhhhhhhc
Confidence                     1111111     135678999966321     1       1279999999999999999999999999999


Q ss_pred             CCCCCCCCccccccCHHHHHHHHHcCCC------cchHHHHHHHHhCCCCEEEecCCCC---------CCCceEEee
Q 012808          316 DPNIHPHAKPVPYLTFDEAAELAYFGAQ------VLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIRR  377 (456)
Q Consensus       316 DP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~~  377 (456)
                      ||+++|+|++|++++|+|+.+++..|..      ++++.|++.|+++|||++|.|+++|         +..||+|.|
T Consensus       149 dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P  225 (225)
T d2brxa1         149 DPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  225 (225)
T ss_dssp             CTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             ccccccccccceEEecchHHHHhccCccccCCCCcccHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence            9999999999999999999999988764      6677799999999999999999877         568999964

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=6.2e-26  Score=215.08  Aligned_cols=212  Identities=22%  Similarity=0.255  Sum_probs=140.2

Q ss_pred             ceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHH
Q 012808           81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV  151 (456)
Q Consensus        81 ~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i  151 (456)
                      ..+|+||||||+.       +.+.++++++.|++..  +...++|+|++++.....+...                    
T Consensus         6 kRIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~--------------------   65 (236)
T d2a1fa1           6 KRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKA--------------------   65 (236)
T ss_dssp             SEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHT--------------------
T ss_pred             cEEEEEEccceecCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhc--------------------
Confidence            4699999999998       6789999999998653  2356677777766665433210                    


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEE
Q 012808          152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI  231 (456)
Q Consensus       152 ~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~ii  231 (456)
                                 +.                         +....+..........+.+++..+..............    
T Consensus        66 -----------~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  105 (236)
T d2a1fa1          66 -----------GM-------------------------NRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQ----  105 (236)
T ss_dssp             -----------TC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSC----
T ss_pred             -----------CC-------------------------CchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhh----
Confidence                       00                         11111222233334555556665666655544322211    


Q ss_pred             eecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCc
Q 012808          232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG  311 (456)
Q Consensus       232 t~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~G  311 (456)
                          . ...........+..     ....+.++++.+.          ..+.+|++|.+|+++|.+++|+.|+|+|||||
T Consensus       106 ----~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~~dnD~laa~vA~~~~Ad~lii~TDVdG  165 (236)
T d2a1fa1         106 ----L-NGICDTYNWSEAIK-----MLREKRVVIFSAG----------TGNPFFTTDSTACLRGIEIEADVVLKATKVDG  165 (236)
T ss_dssp             ----C-TTTSEECCHHHHHH-----HHHTTCEEEEEST----------TSCSSCCHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             ----h-hhhHHHhhhhhhhh-----hhhhccccccccc----------ccCCCCCCcHHHHHHHHHhchhHHHHhhcccc
Confidence                1 11111112222211     1345566666441          23457789999999999999999999999999


Q ss_pred             cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCCC---------CCceEE
Q 012808          312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI  375 (456)
Q Consensus       312 V~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I  375 (456)
                      |||+||+++|+|+++++++|+|+.+   .|++++|++|++.|+++|||++|.|+++|+         .+||+|
T Consensus       166 vyt~dP~~~~~A~~i~~i~~~e~l~---~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI  235 (236)
T d2a1fa1         166 VYDCDPAKNPDAKLYKNLSYAEVID---KELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI  235 (236)
T ss_dssp             CBCC-------CCBCSEECHHHHHH---TTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEE
T ss_pred             cccccccccccccccccccHHHHHh---cCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCccee
Confidence            9999999999999999999999866   499999999999999999999999999984         679998

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=1.2e-25  Score=211.80  Aligned_cols=203  Identities=20%  Similarity=0.255  Sum_probs=147.7

Q ss_pred             ceEEEEeCccccCC-HHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s-~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      |.+|+|||||++.+ .+.++++++.|++.. +++.+||||+ |....                            .|...
T Consensus         1 MrIViKiGgs~l~~~~~~i~~la~~i~~l~~~~~~vIVvsg-G~~ar----------------------------~~~~~   51 (219)
T d2ij9a1           1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAR----------------------------EYIKS   51 (219)
T ss_dssp             CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHH----------------------------HHHHH
T ss_pred             CEEEEEecccccCCcHHHHHHHHHHHHHHHcCCcEEEEECC-Ccccc----------------------------chhhh
Confidence            56899999999964 788999999998754 3466788886 21111                            12233


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecCCCC
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN  238 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~~~~  238 (456)
                      +.+++.                         ++...+++...+..+++.++...|...|.+..                 
T Consensus        52 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------   89 (219)
T d2ij9a1          52 ARELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSAAKKVP-----------------   89 (219)
T ss_dssp             HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTBCSSCC-----------------
T ss_pred             hhhcCc-------------------------cHHHHHHHHHHHHHhhHHHHHHHhhhccchhh-----------------
Confidence            334433                         33445666666777888877776665554320                 


Q ss_pred             cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCC
Q 012808          239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN  318 (456)
Q Consensus       239 a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~  318 (456)
                           ..+.+..+     +++.+.+||..|+++.            +.+|++|+++|..++||.|+++||||||||+||+
T Consensus        90 -----~~~~~~~~-----l~~~~~v~v~~~~~~~------------~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~  147 (219)
T d2ij9a1          90 -----VDFMEAEE-----LSKLYRVVVMGGTFPG------------HTTDATAALLAEFIKADVFINATNVDGVYSADPK  147 (219)
T ss_dssp             -----SSHHHHHH-----HHTTCSEEEECCCSSS------------SCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred             -----HHHHHHHH-----HhccCCceEECCCCCC------------CcccHHHHHHHHHcCchHhhhccCcccccccccc
Confidence                 11222221     2355679998775432            2379999999999999999999999999999999


Q ss_pred             CCCCCccccccCHHHHHHHHHcCC------CcchHHHHHHHHhCCCCEEEecCCC--------CCCCceEEe
Q 012808          319 IHPHAKPVPYLTFDEAAELAYFGA------QVLHPQSMRPAREGDIPVRVKNSYN--------PNAPGTLIR  376 (456)
Q Consensus       319 ~v~~Ak~i~~ls~~Ea~eLa~~Ga------~vlhp~a~~~a~~~~Ipv~I~n~~~--------p~~~GT~I~  376 (456)
                      .+|+|++|+++||+|+.+++..|.      .++++.+++.|+++|||++|.|+..        .+..||+|+
T Consensus       148 ~~~~A~~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~~~ni~~~l~Ge~vGT~Is  219 (219)
T d2ij9a1         148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECCHHHHHHHHTTCCCSEEEC
T ss_pred             cCcccccccccCHHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCCCcHHHHHHCCCCCceEeC
Confidence            999999999999999999875433      3789999999999999999998742        246799984

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

Probab=99.91  E-value=3.5e-25  Score=212.58  Aligned_cols=216  Identities=18%  Similarity=0.263  Sum_probs=150.1

Q ss_pred             eEEEEeCccccCC-----HHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLAS-----AERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH  155 (456)
Q Consensus        82 ~~V~KFGGsSv~s-----~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~  155 (456)
                      .+|+|||||++.+     .++++++++.|+...+ .+.+||+|+++.       .+..                      
T Consensus         2 rIViKlGGs~it~k~~~~~~~l~~~~~~I~~l~~~~~~vIV~gGa~~-------~G~~----------------------   52 (250)
T d2akoa1           2 RIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAAIS-------AGHT----------------------   52 (250)
T ss_dssp             EEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECCHHH-------HHHH----------------------
T ss_pred             EEEEEeccCeeeCCCCcCHHHHHHHHHHHHHHHcCCeEEEEEcCccc-------cccc----------------------
Confidence            5799999999975     4788889998876432 355666664311       1110                      


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC
Q 012808          156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD  235 (456)
Q Consensus       156 ~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~  235 (456)
                           .++...                      ......+.+.+.||..+..++...|...|+.+...      +++...
T Consensus        53 -----~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~------l~~~~~   99 (250)
T d2akoa1          53 -----KLDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGKD   99 (250)
T ss_dssp             -----HCCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTGG
T ss_pred             -----cccccc----------------------chhhhhhhhhcccchhHHHHHHHHhhhcccccccc------cccccc
Confidence                 111111                      11223455677899999999999999999987542      233222


Q ss_pred             CCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccC
Q 012808          236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC  315 (456)
Q Consensus       236 ~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta  315 (456)
                      +....    .+....+.+. .+++.+.+||+.+-     ..+....+++|++|++|+++|..++|++|+++||||||||+
T Consensus       100 ~~~~~----~~~~~~~~~~-~~l~~~~ipv~~~~-----~~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~  169 (250)
T d2akoa1         100 FDSRK----ATKHAKNAID-MMINLGILPIINEN-----DATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDK  169 (250)
T ss_dssp             GGCHH----HHHHHHHHHH-HHHHTTCEEEEEEC-----TTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSS
T ss_pred             hhhhh----hhhhhhHHHH-HHHHhCcccccccC-----ccccccccccccchhhHHHHHHhcccceeeeccCCCceeeC
Confidence            22111    1111222222 24577899998762     23456778899999999999999999999999999999999


Q ss_pred             CCCCCCCCccccccCH--HHHHHHHH-----cCCCcchHH--HHHHHHhCCCCEEEecCCCCC
Q 012808          316 DPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN  369 (456)
Q Consensus       316 DP~~v~~Ak~i~~ls~--~Ea~eLa~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~  369 (456)
                      ||+++|+|++|+++||  +|..+++.     +|...|.+|  +++.++++|||++|.|+++|+
T Consensus       170 dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~~  232 (250)
T d2akoa1         170 NPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLS  232 (250)
T ss_dssp             CTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred             CCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCcc
Confidence            9999999999999998  45544442     234568875  788999999999999998773

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

Probab=99.91  E-value=2.9e-23  Score=195.68  Aligned_cols=214  Identities=20%  Similarity=0.232  Sum_probs=144.7

Q ss_pred             ceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHH
Q 012808           81 LTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK  152 (456)
Q Consensus        81 ~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~-~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~  152 (456)
                      ..+|+|||||++.       |.+.++++++.|++.. ....|++||.++........                       
T Consensus         5 krIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~-----------------------   61 (236)
T d1ybda1           5 KRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSA-----------------------   61 (236)
T ss_dssp             SEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH-----------------------
T ss_pred             CEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccc-----------------------
Confidence            4589999999997       5678999999998653 23445555543322110000                       


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEe
Q 012808          153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT  232 (456)
Q Consensus       153 ~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit  232 (456)
                             ...                         ....................+....+...+...........    
T Consensus        62 -------~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  105 (236)
T d1ybda1          62 -------QAG-------------------------SMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSM----  105 (236)
T ss_dssp             -------HHT-------------------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCB----
T ss_pred             -------ccc-------------------------ccccchhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh----
Confidence                   000                         01122223333344455556666667777777655433211    


Q ss_pred             ecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcc
Q 012808          233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV  312 (456)
Q Consensus       233 ~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV  312 (456)
                          .... .......+...     +..+.++++...          ..+++|++|.+|+++|..++|+.++++||||||
T Consensus       106 ----~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~----------~~~~~gdnD~laa~vA~~~~ad~liilTdVdGv  165 (236)
T d1ybda1         106 ----QQIA-ETYARPKAIQY-----LEEGKVVIFAAG----------TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGV  165 (236)
T ss_dssp             ----SSSC-EECCHHHHHHH-----HHTTCEEEEEST----------TSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSC
T ss_pred             ----hhhh-hhHHHHHHHhh-----hccCceeccccc----------cccccccchHHHHHHHHHhCccceeeccCccch
Confidence                1111 11111112111     234556665331          224678899999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCC---------CCCceEEe
Q 012808          313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR  376 (456)
Q Consensus       313 ~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~  376 (456)
                      ||.||+++|+|+++++++|+|+.+   .|..+|+++|++.|+++|||++|.|+++|         +..||+|.
T Consensus       166 y~~dP~~~~~a~~~~~~~~~e~~~---~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh  235 (236)
T d1ybda1         166 YTADPKKDPSATRYETITFDEALL---KNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  235 (236)
T ss_dssp             BSSCGGGCTTCCBCSEEEHHHHHH---TTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             hhccccccccceeeccccHHHHHh---cCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence            999999999999999999998754   58999999999999999999999999998         56899984

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.84  E-value=5.9e-20  Score=171.91  Aligned_cols=219  Identities=18%  Similarity=0.175  Sum_probs=146.7

Q ss_pred             CcceEEEEeCccccC-------CHHHHHHHHHHHHcCCC-CCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHH
Q 012808           79 KQLTCVMKFGGSSLA-------SAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF  150 (456)
Q Consensus        79 ~~~~~V~KFGGsSv~-------s~~~~~~va~iI~~~~~-~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~  150 (456)
                      +...+|+|+|||++.       +.+.++++++.|++..+ ...|++||..+..--. ....                   
T Consensus         3 k~krIViKiGgs~lt~~~~~~l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~-~~~~-------------------   62 (238)
T d1z9da1           3 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRG-EPAA-------------------   62 (238)
T ss_dssp             SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCH-HHHH-------------------
T ss_pred             CCCEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecccccccc-eecc-------------------
Confidence            446789999999996       46789999999987533 3456666654432211 0000                   


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeE
Q 012808          151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF  230 (456)
Q Consensus       151 i~~~~~~~~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~i  230 (456)
                              .                           ........+.....+...+..+.+..+...|+..........  
T Consensus        63 --------~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--  105 (238)
T d1z9da1          63 --------D---------------------------AGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPM--  105 (238)
T ss_dssp             --------H---------------------------HTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCB--
T ss_pred             --------c---------------------------cCCcchhHHHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhh--
Confidence                    0                           011233334445556666777778888999998765433221  


Q ss_pred             EeecCCCCcceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       231 it~~~~~~a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                            ..... ......   .+.. .... .+++..+..         .....+..|..++++|..++|+.++++||||
T Consensus       106 ------~~~~~-~~~~~~---~i~~-~~~~-~~~~~~~~~---------~~~~~~~~d~~~~~~a~~~~a~~li~~tdVd  164 (238)
T d1z9da1         106 ------QNVAE-PYIRGR---ALRH-LEKN-RIVVFGAGI---------GSPYFSTDTTAALRAAEIEADAILMAKNGVD  164 (238)
T ss_dssp             ------TTTBE-ECCHHH---HHHH-HHTT-CEEEEESTT---------SCTTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred             ------HHHHh-hhhHHH---HHhh-hccc-cccceecce---------eccCCCCchHHHHHHHHHhhhhhhccccccc
Confidence                  11110 011111   1111 1122 233332211         1122344788999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHHHHHHHHhCCCCEEEecCCCC---------CCCceEEeec
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIRRS  378 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~~~  378 (456)
                      |+|++||+..|+|++++.++++|..+   .|..+|+++|++.++++|||++|.|+++|         +.+||+|+++
T Consensus       165 Gvy~~~P~~~~~a~~~~~~~~~~~~~---~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~~  238 (238)
T d1z9da1         165 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK  238 (238)
T ss_dssp             SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred             ceecccccccccchhhccccccchhc---cCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEeccC
Confidence            99999999999999999999998654   58899999999999999999999999998         5789999863

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=1.1e-18  Score=171.59  Aligned_cols=235  Identities=18%  Similarity=0.294  Sum_probs=164.8

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .++|.|+||+.+.+++.+..+++.|....  +.++|+|+++...+...|.+.                            
T Consensus        27 ktiVIKlGG~~l~~~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~----------------------------   78 (300)
T d2bufa1          27 KTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRL----------------------------   78 (300)
T ss_dssp             CEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHT----------------------------
T ss_pred             CEEEEEEChHHhCChhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhc----------------------------
Confidence            67999999999999888888888776442  345555554433344433322                            


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC--
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD--  235 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~--  235 (456)
                          +++..           +.+|.+.   .++...+.+ ..++..++..+.+ .|++.|+++..+.+.+.+++....  
T Consensus        79 ----gi~~~-----------~~~g~Rv---T~~~~l~~~~~~~~g~vn~~lv~-~l~~~g~~a~~l~~~d~~~i~~~~~~  139 (300)
T d2bufa1          79 ----SIESH-----------FIDGMRV---TDAATMDVVEMVLGGQVNKDIVN-LINRHGGSAIGLTGKDAELIRAKKLT  139 (300)
T ss_dssp             ----TCCCC-----------BSSSSBC---BCHHHHHHHHHHHHHTHHHHHHH-HHHHTTCCEEEEEETGGGCEEEEECC
T ss_pred             ----ccCce-----------ecCCccc---ccchhHHHHHHHHHhHHHHHHHH-HHHhcCCcccccCCCccceEEeeccc
Confidence                11111           1223322   234444444 3444456777654 589999999999887765555421  


Q ss_pred             ---------------CCCc-ceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcC
Q 012808          236 ---------------FTNA-DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALG  299 (456)
Q Consensus       236 ---------------~~~a-~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~  299 (456)
                                     ++.. ++...+...     ...+++.+.|||+++ +|.+ .+|+..+++   +|..|+.+|.+|+
T Consensus       140 ~~~~~~~~~~~~~id~g~~G~v~~v~~~~-----i~~ll~~g~Ipvis~-~~~~-~~G~~~nin---~D~~Aa~lA~~L~  209 (300)
T d2bufa1         140 VTRQTPEMTKPEIIDIGHVGEVTGVNVGL-----LNMLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEALK  209 (300)
T ss_dssp             CCCC--------CCCCBSBEEEEEECHHH-----HHHHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHHHT
T ss_pred             ccccCcccccccccccCcccceeecchhH-----HHHHhcCCCeEEecc-cccC-cccchhccc---HHHHHHHHHHHcC
Confidence                           2221 232333332     233467899999987 6777 589999998   9999999999999


Q ss_pred             CceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHH--HHHHHHhCCCC-EEEecCCCC------
Q 012808          300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP------  368 (456)
Q Consensus       300 A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p------  368 (456)
                      |++++|+|||+|||+.+      .+++++++.+|+.++...|.  ..|-|+  ++..|.++|++ ++|.|+..|      
T Consensus       210 AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~i~gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~e  283 (300)
T d2bufa1         210 AEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLE  283 (300)
T ss_dssp             CSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHH
T ss_pred             CCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Confidence            99999999999999754      35689999999999998764  568886  67788999997 999998665      


Q ss_pred             ----CCCceEEeec
Q 012808          369 ----NAPGTLIRRS  378 (456)
Q Consensus       369 ----~~~GT~I~~~  378 (456)
                          +..||.|+++
T Consensus       284 Lft~~g~GT~I~~~  297 (300)
T d2bufa1         284 IFTDSGVGTLISNR  297 (300)
T ss_dssp             HSSTTCCSEEEECC
T ss_pred             HcCCCCceeEEecC
Confidence                3579999875

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=2.2e-18  Score=168.27  Aligned_cols=237  Identities=20%  Similarity=0.239  Sum_probs=161.5

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCc-CchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGK-TTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~-~~~~vvVVSA~g~-vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      .++|.|+||+.+.+++.++.+++.|.... .+.++|+||..+. ..+.|.+.+.                          
T Consensus        26 ktiVIKlGGsvl~~~~~~~~l~~dia~L~~~G~~vVlVhGg~~~i~~~l~~~~~--------------------------   79 (291)
T d2ap9a1          26 KVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGI--------------------------   79 (291)
T ss_dssp             CEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTC--------------------------
T ss_pred             CEEEEEECcHHhcCHHHHHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHcCC--------------------------
Confidence            57899999999999999999998887643 2333444454444 4443333211                          


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeec---
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD---  234 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i-~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~---  234 (456)
                            .+.           +.++.+   -.++...+.+ ..+++..+.. +.+.+...|+.+..+...+.++....   
T Consensus        80 ------~~~-----------~~~~~r---~t~~~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~a~~~~  138 (291)
T d2ap9a1          80 ------EGD-----------FKGGFR---VTTPEVLDVARMVLFGQVGRE-LVNLINAHGPYAVGITGEDAQLFTAVRRS  138 (291)
T ss_dssp             ------CCC-----------CSSSSC---CBCHHHHHHHHHHHHHTHHHH-HHHHHTTSSSCEEEEETTGGGCEEEEECC
T ss_pred             ------Ccc-----------cccccc---cCcHHHHHHHHHhhhhHHHHH-HHHHHHhcCCccccchhhhcccccccccc
Confidence                  110           011111   1234444444 3334444444 45668899999988876655444321   


Q ss_pred             --------CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEE
Q 012808          235 --------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV  305 (456)
Q Consensus       235 --------~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i  305 (456)
                              +++. .++...+...+..     +++.+.+||+++ ++.+ .+|+..+++   +|.+|+.+|.+|+|++|+|
T Consensus       139 ~~~~~~~~~~~~~G~v~~v~~~~I~~-----ll~~g~ipvi~~-~~~~-~~g~~~n~d---~D~lAa~lA~~l~AdkLI~  208 (291)
T d2ap9a1         139 VTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVST-LAPD-ADGVVHNIN---ADTAAAAVAEALGAEKLLM  208 (291)
T ss_dssp             BCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEES-EEEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEEE
T ss_pred             cccccccccceeecccccchHHHHHH-----HHhcCCCcccCc-cccC-Ccccccccc---HHHHHHHHHHhcCCcEEEE
Confidence                    1222 1333334433333     467899999998 4556 478888887   9999999999999999999


Q ss_pred             eecCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHH--HHHHHHhCCCC-EEEecCCCC----------CCCc
Q 012808          306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPG  372 (456)
Q Consensus       306 ~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~G  372 (456)
                      +|||||||+.+|+.   ...++.++.+|+.++...+...|.|+  ++..|.++|+| ++|.|+..|          +..|
T Consensus       209 LTdv~Gv~~~~~~~---~~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~G  285 (291)
T d2ap9a1         209 LTDIDGLYTRWPDR---DSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTG  285 (291)
T ss_dssp             EESSSSEETTTTCT---TCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCS
T ss_pred             eeccCccccccccc---ccccccCCHHHHHHHHhhhhCchHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCc
Confidence            99999999988864   35678889999999987777788886  67778899998 999998665          3579


Q ss_pred             eEEee
Q 012808          373 TLIRR  377 (456)
Q Consensus       373 T~I~~  377 (456)
                      |+|.+
T Consensus       286 T~I~r  290 (291)
T d2ap9a1         286 TKVVR  290 (291)
T ss_dssp             EEEEC
T ss_pred             eEEec
Confidence            99864

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=3.4e-18  Score=166.39  Aligned_cols=234  Identities=23%  Similarity=0.288  Sum_probs=159.3

Q ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHH
Q 012808           81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT  158 (456)
Q Consensus        81 ~~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  158 (456)
                      ..+|+|+||+.+.+++.++++++.|....  +.++|+|+++....+..|.+.+                           
T Consensus        22 k~iVIKlGgsvi~~~~~~~~l~~dIa~L~~~G~~iVlVhGg~~~~~~~l~~~~---------------------------   74 (282)
T d2btya1          22 KTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLG---------------------------   74 (282)
T ss_dssp             CEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHT---------------------------
T ss_pred             CEEEEEECchHhCChhHHHHHHHHHHHHHHCCCeEEEEECCCccchhhHHHcC---------------------------
Confidence            46899999999999999999998887542  4455555554444444433321                           


Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHh-hhHHHHHHHHHHHHHHcCCceEEecccceeEEeec---
Q 012808          159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVS-FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD---  234 (456)
Q Consensus       159 ~~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s-~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~---  234 (456)
                           +++.           +..+.   .-......+.+.. +...++.. +...|+..|+++..+.+.+.......   
T Consensus        75 -----i~~~-----------~~~~~---~~t~~~~~~~~~~~~~~~~n~~-~~~~l~~~g~~a~~l~~~~~~~~~~~~~~  134 (282)
T d2btya1          75 -----IEPV-----------FKNGH---RVTDEKTMEIVEMVLVGKINKE-IVMNLNLHGGRAVGICGKDSKLIVAEKET  134 (282)
T ss_dssp             -----CCCC-----------BSSSS---BCBCHHHHHHHHHHHHHTHHHH-HHHHHHTTTCCEEEEETTGGGSEEEEECC
T ss_pred             -----Ccce-----------eccCc---cccchhhHHHHHHHHhchhhHH-HHHHHHhcCCCeeeeeccccceeEecccc
Confidence                 1110           00010   1112333333322 22234444 45679999999999987765444432   


Q ss_pred             ---CCCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCC
Q 012808          235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD  310 (456)
Q Consensus       235 ---~~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~  310 (456)
                         +++. .++...+...+..     +++.+.|||++++ +.+ .+|++.+++   +|.+|+.+|.+|+|++++++|||+
T Consensus       135 ~~~d~~~~g~~~~v~~~~i~~-----lL~~~~ipvi~~~-~~~-~~g~~~nl~---~d~~aa~iA~~l~AdkLI~ltdv~  204 (282)
T d2btya1         135 KHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDVD  204 (282)
T ss_dssp             TTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESSS
T ss_pred             ccccccccccccccChHHHHH-----HHhCCCceeecCc-ccC-Ccceeeecc---ccchhHHHhhhcCCceeEEecccc
Confidence               2222 2444455544443     3567899999984 555 478888887   999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHH--HHHHHHhCCCC-EEEecCCCC----------CCCceEE
Q 012808          311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPGTLI  375 (456)
Q Consensus       311 GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~GT~I  375 (456)
                      |+|+       +.+++++++.+|+.++...+  ...|.|+  ++..|.++|+| ++|.|+..|          +..||+|
T Consensus       205 Gl~~-------d~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I  277 (282)
T d2btya1         205 GVLK-------DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI  277 (282)
T ss_dssp             SCEE-------TTEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEE
T ss_pred             ceec-------CccccccCCHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEE
Confidence            9995       35789999999999987654  2467775  77888999998 999998665          3579999


Q ss_pred             eec
Q 012808          376 RRS  378 (456)
Q Consensus       376 ~~~  378 (456)
                      ++.
T Consensus       278 ~~~  280 (282)
T d2btya1         278 KEL  280 (282)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            763

>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.58  E-value=9.6e-15  Score=143.47  Aligned_cols=114  Identities=14%  Similarity=0.104  Sum_probs=84.2

Q ss_pred             ccCCceEEEcCCCc-------CCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccC
Q 012808          258 ITDLAIPIVTGFLG-------KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT  330 (456)
Q Consensus       258 l~~~~VpVv~Gfig-------~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls  330 (456)
                      .+++.+|++.+...       .. .+|+..+.+   +|..|+.+|.+++|++++++|||||||+.+|+  ++++++++++
T Consensus       182 ~~~~~i~vl~~~~~~~v~~~~~~-~~G~~~nin---aD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~~--~~~~~i~~l~  255 (313)
T d1e19a_         182 VERGVIVIASGGGGVPVILEDGE-IKGVEAVID---KDLAGEKLAEEVNADIFMILTDVNGAALYYGT--EKEQWLREVK  255 (313)
T ss_dssp             HHTTCEEECSGGGCEEEEEETTE-EEECCCCCC---HHHHHHHHHHHTTCSEEEEEESSSSCEETTTS--TTCEECCEEE
T ss_pred             cccchhhhhccCCCCCccccCCC-cCceEEecc---hhHHHHHHHHHHHHHHHHhccCCcceeccCCC--cccceeeeCC
Confidence            45677777754211       11 135555555   89999999999999999999999999987775  6789999999


Q ss_pred             HHHHHHHHHcC---CCcchHH--HHHHHHhCCC-CEEEecCCCC-----CCCceEEee
Q 012808          331 FDEAAELAYFG---AQVLHPQ--SMRPAREGDI-PVRVKNSYNP-----NAPGTLIRR  377 (456)
Q Consensus       331 ~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~I-pv~I~n~~~p-----~~~GT~I~~  377 (456)
                      .+|+.++...|   ...|-||  ++..|.++++ +++|.+..+.     ...||+|.|
T Consensus       256 ~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~~~~i~~~l~g~~GT~i~P  313 (313)
T d1e19a_         256 VEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGKTGTQVLP  313 (313)
T ss_dssp             HHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTTSSSEEEEC
T ss_pred             HHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECChHHHHHHHCCCCCCEEcC
Confidence            99999998754   3459997  6656667775 6888653221     125999864

>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Enterococcus faecium [TaxId: 1352]

Probab=99.51  E-value=3.8e-14  Score=138.30  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=77.3

Q ss_pred             CCceeeccCCCChhHHHHHHHHcCCceEEEeecCCccccCCCCCCCCCccccccCHHHHHHHHHcC---CCcchHH--HH
Q 012808          276 TCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG---AQVLHPQ--SM  350 (456)
Q Consensus       276 ~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~Ak~i~~ls~~Ea~eLa~~G---a~vlhp~--a~  350 (456)
                      +|+..+.+   +|..|+.+|.+|+|++++|+|||||||+.+|+  |+.+++++++.+|+.+|...|   ...|.||  ++
T Consensus       200 ~g~~~nin---aD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA  274 (307)
T d1b7ba_         200 KGVEAVID---KDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAA  274 (307)
T ss_dssp             EECSCCCC---HHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHH
T ss_pred             CCcEEecc---hhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccccccCCHHHHHHHHHCCCcccCChHHHHHHH
Confidence            56666666   99999999999999999999999999998885  677889999999999998865   3469998  78


Q ss_pred             HHHHhCCCC-EEEecC-------CCCCCCceEE
Q 012808          351 RPAREGDIP-VRVKNS-------YNPNAPGTLI  375 (456)
Q Consensus       351 ~~a~~~~Ip-v~I~n~-------~~p~~~GT~I  375 (456)
                      ..|.++|++ ++|.++       +..+..||+|
T Consensus       275 ~~al~~Gv~~~~ii~~~~~l~~l~~~~~~GT~I  307 (307)
T d1b7ba_         275 IQFVESQPNKQAIITSLENLGSMSGDEIVGTVV  307 (307)
T ss_dssp             HHHHTTSTTCEEEEECHHHHTTCSSCSCEEECC
T ss_pred             HHHHHcCCCeEEEECCHHHHHHHHcCCCCCCCC
Confidence            888999995 555543       2234457765

>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.1e-13  Score=129.66  Aligned_cols=233  Identities=16%  Similarity=0.208  Sum_probs=147.6

Q ss_pred             eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcCchHHHHhhHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 012808           82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV  159 (456)
Q Consensus        82 ~~V~KFGGsSv~s~~~~~~va~iI~~~~--~~~~vvVVSA~g~vTd~Ll~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  159 (456)
                      .+|+|||||++.|++.+.++++.|....  +.++|||||++|...+.+++-                             
T Consensus         4 ~IVIKiGgs~lt~~~~~~~~~~~ia~l~~~g~~~vvvvhG~g~~~~~~~~~-----------------------------   54 (258)
T d1gs5a_           4 PLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKG-----------------------------   54 (258)
T ss_dssp             CEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHH-----------------------------
T ss_pred             CEEEEECchhccCHHHHHHHHHHHHHHHHCCCceEEEECCCchhhhcchhh-----------------------------
Confidence            4899999999999999999999987542  457789999887766655441                             


Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceeEEeecC----
Q 012808          160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD----  235 (456)
Q Consensus       160 ~~l~~~~~~i~~~~~~L~~ll~gi~~~~e~~~~~~d~i~s~GE~lsa~lla~~L~~~Gi~a~~ld~~~~~iit~~~----  235 (456)
                        ++..+.           +..+.+   .........+...........+...+...|.++...............    
T Consensus        55 --~g~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (258)
T d1gs5a_          55 --LNLPVK-----------KKNGLR---VTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEE  118 (258)
T ss_dssp             --HTCCCC-----------EETTEE---CBCHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGG
T ss_pred             --hccccc-----------cccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccccccccccccccc
Confidence              111110           000000   111222222211111122233445688899998887665533332211    


Q ss_pred             CCC-cceeecchHHHHHHHhhccccCCceEEEcCCCcCCCCCCceeeccCCCChhHHHHHHHHcCCceEEEeecCCcccc
Q 012808          236 FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT  314 (456)
Q Consensus       236 ~~~-a~i~~~~~~~i~~~l~~~ll~~~~VpVv~Gfig~~~~~G~vttlgRGGSD~tAa~lA~~L~A~~l~i~TDV~GV~t  314 (456)
                      +.. .++.......+..     ++.++.+|++.++ +.+ .++...++.   +|..|+.+|..++|+.+ +++|++|++.
T Consensus       119 ~~~~~~~~~~~~~~i~~-----~~~~~~i~v~~~~-~~~-~~~~~~~~~---~~~~a~~~a~~l~a~~~-~~~~~~~~~~  187 (258)
T d1gs5a_         119 LGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGADLI-LLSDVSGILD  187 (258)
T ss_dssp             GBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCEEE-EEESSSSCBC
T ss_pred             ccccccccccccchHHH-----HHhcccccccccc-ccc-cCCcEEEec---hhhhhhhHHHHHHhhhh-hhcccccccc
Confidence            111 2333334443333     2467889999885 444 367777776   89999999999999865 6799999998


Q ss_pred             CCCCCCCCCccccccCHHHHHHHHHc--CCCcchHH--HHHHHHhCCCC-EEEecCCCC---------CCCceEEe
Q 012808          315 CDPNIHPHAKPVPYLTFDEAAELAYF--GAQVLHPQ--SMRPAREGDIP-VRVKNSYNP---------NAPGTLIR  376 (456)
Q Consensus       315 aDP~~v~~Ak~i~~ls~~Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p---------~~~GT~I~  376 (456)
                      .++.      ..+.+...+...+...  +...|-||  ++..|.++|++ ++|.|+..|         +..||+|.
T Consensus       188 ~~~~------~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~  257 (258)
T d1gs5a_         188 GKGQ------RIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             TTSC------BCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             cccc------cccccchHHHHHHHhCCcccchHHHHHHHHHHHHHcCCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence            7654      3556667776666544  44568886  78888999996 999998665         35799884

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=2.7e-13  Score=109.80  Aligned_cols=64  Identities=89%  Similarity=1.222  Sum_probs=60.6

Q ss_pred             ceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       384 ~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      ..+++|++++|+++|++.|.+|.+.||+++++|+.|+++||||+||++||.+|||+|++++...
T Consensus         2 ~~v~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~Se~~is~~v~~~~~~~   65 (91)
T d2cdqa2           2 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWS   65 (91)
T ss_dssp             CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSS
T ss_pred             CceEEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEecCCeEEEEEchhHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999887653

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.30  E-value=2.4e-12  Score=105.84  Aligned_cols=71  Identities=21%  Similarity=0.418  Sum_probs=64.1

Q ss_pred             ccceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc-HHHHh
Q 012808          382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS-RELIQ  452 (456)
Q Consensus       382 ~~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~-~~l~~  452 (456)
                      ....|++|++.+|+++|+++|.+|.+.||+++++|++|+++||||+||+  +||.+|+|+|+++|... -+.++
T Consensus         2 ~~~~vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V~~~d~~~a~~~L~   75 (100)
T d2hmfa3           2 SDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALK   75 (100)
T ss_dssp             CSSSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEECSTTHHHHHHHHH
T ss_pred             CCCceeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEEeHHHHHHHHHHHH
Confidence            3457999999999999999999999999999999999999999999998  78999999999998765 44444

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.1e-12  Score=106.08  Aligned_cols=63  Identities=43%  Similarity=0.632  Sum_probs=60.0

Q ss_pred             cceeeEEEEecCeEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCc
Q 012808          383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL  445 (456)
Q Consensus       383 ~~~i~~I~~~~nvalIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~  445 (456)
                      ++.+++|+.++|+++|+|+|.+|.+.||+++++|++|+++||||+||++||.+|||+|+.++.
T Consensus         2 ~p~vk~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~Se~~is~~v~~~~~   64 (91)
T d2j0wa2           2 PPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGS   64 (91)
T ss_dssp             CCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCC
T ss_pred             CCcceEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEccCcEEEEEEchhHH
Confidence            357999999999999999999999999999999999999999999999999999999998764

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.03  E-value=1.4e-10  Score=88.20  Aligned_cols=53  Identities=28%  Similarity=0.577  Sum_probs=50.3

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      +++|+++|.+|.++||+++|+|++|+++||||.||+  +||.+|+|+|+++|...
T Consensus         1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~   55 (67)
T d2hmfa2           1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLN   55 (67)
T ss_dssp             EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHH
T ss_pred             CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHHH
Confidence            589999999999999999999999999999999998  89999999999998755

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=2.4e-09  Score=82.97  Aligned_cols=51  Identities=14%  Similarity=0.350  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE--eCCCEEEEEEcCCCcCc
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Is--tSe~sIsi~V~~~d~~~  447 (456)
                      ++|+++| +|.+.||+++|+|++|+++||||+||+  +||.+|+|+|+++|...
T Consensus         2 a~IsvVG-~~~~~~Giaarif~aL~~~~InV~mIsqg~se~~Is~vV~~~d~~~   54 (75)
T d2cdqa3           2 AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEG   54 (75)
T ss_dssp             EEEEEEE-CGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHH
T ss_pred             cEEEEEC-CCCCChhHHHHHHHHHHHcCCceEEEEcCccceEEEEEEeHHHHHH
Confidence            7899999 899999999999999999999999998  78999999999987654

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=4.9e-09  Score=78.67  Aligned_cols=53  Identities=13%  Similarity=0.228  Sum_probs=48.8

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS  447 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~  447 (456)
                      +++|+++|.+|.+.||+++|+|++|++.||++.+.++||.+|||+|+++|...
T Consensus         1 la~IsvvG~gm~~~~gi~arif~~L~~~nI~~i~~~~Se~~is~vV~~~d~~~   53 (64)
T d2j0wa3           1 LALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQ   53 (64)
T ss_dssp             EEEEEEEESSCTTSSSHHHHHHSSCTTSCCCEEEESSCTTEEEEEEEGGGHHH
T ss_pred             CeEEEEECCCcccCccHHHHHHHHHhhCCCeEEEEEcCccEEEEEEcHHHHHH
Confidence            58999999999999999999999999888888777899999999999998754

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=94.91  E-value=0.027  Score=41.62  Aligned_cols=54  Identities=11%  Similarity=0.175  Sum_probs=39.6

Q ss_pred             EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEE---eCCCEEEEEEcCCCcCcHHHHhhh
Q 012808          398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA---TSEVSLSLTLDPSKLWSRELIQQA  454 (456)
Q Consensus       398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~Is---tSe~sIsi~V~~~d~~~~~l~~~~  454 (456)
                      |+|.   +.+.||.++++.+.|+++||||+-++   +.+..|+-.+-++.-...+++++.
T Consensus         6 isV~---~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~~e~a~~~L~~~   62 (70)
T d2f06a2           6 LSIF---LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN   62 (70)
T ss_dssp             EEEE---ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHT
T ss_pred             EEEE---EeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECChHHHHHHHHHC
Confidence            5555   56899999999999999999999986   556666655544433445566553

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=92.77  E-value=0.11  Score=38.06  Aligned_cols=50  Identities=20%  Similarity=0.303  Sum_probs=35.7

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEE---eCCCEEEEEEcCCCcC-cHHHHhhhc
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVA---TSEVSLSLTLDPSKLW-SRELIQQAS  455 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~Is---tSe~sIsi~V~~~d~~-~~~l~~~~~  455 (456)
                      +.+.||-++++.+.|+++||||+-+.   +.+..+ +.+.-+|.. ..+++++.+
T Consensus         6 v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~-~vl~vdd~~~a~~~L~~~G   59 (71)
T d2f06a1           6 CPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVAN-VVIRPSNMDKCIEVLKEKK   59 (71)
T ss_dssp             EESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEE-EEEEESCHHHHHHHHHHTT
T ss_pred             ecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEE-EEEEECCHHHHHHHHHHCC
Confidence            67899999999999999999998874   344443 333334443 477776654

>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Atu0741-like
domain: Hypothetical protein Atu0741
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.71  E-value=0.14  Score=37.13  Aligned_cols=56  Identities=20%  Similarity=0.260  Sum_probs=44.7

Q ss_pred             EEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcCc-HHHHhh
Q 012808          397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS-RELIQQ  453 (456)
Q Consensus       397 lIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~~-~~l~~~  453 (456)
                      .+++.|..-.+..|+++++-+.|+++||++..+++-..+.-| |+.+++.+ -+.+++
T Consensus         4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~~D~il-Vp~~~~~~A~~~L~~   60 (66)
T d1zhva2           4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLL-VRSNDLEKTADLLAN   60 (66)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEE-EEGGGHHHHHHHHHH
T ss_pred             EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeeeccEEE-EEHHHHHHHHHHHHH
Confidence            467777766788999999999999999999999988877755 77776654 555554

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=91.36  E-value=0.17  Score=38.02  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=37.8

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEe--CC----CEEEEEEcCCCcCcHHHHhh
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVAT--SE----VSLSLTLDPSKLWSRELIQQ  453 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~Ist--Se----~sIsi~V~~~d~~~~~l~~~  453 (456)
                      ..+.||+++|+...|++.|+||+-++.  +|    ..++++++.++-.-.++.+|
T Consensus        10 v~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQ   64 (78)
T d2fgca2          10 VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQ   64 (78)
T ss_dssp             EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHH
T ss_pred             EeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHH
Confidence            347999999999999999999999873  22    66888888766444555554

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.87  E-value=0.63  Score=34.51  Aligned_cols=33  Identities=21%  Similarity=0.521  Sum_probs=28.9

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT  431 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist  431 (456)
                      ++|++.|.   +.||+++++.+.|+++|+||.-+++
T Consensus         3 ~vitv~g~---DrpGiVa~vt~~l~~~g~NI~d~~q   35 (83)
T d1zpva1           3 AIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQ   35 (83)
T ss_dssp             EEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEEcC---CCCCHHHHHHHHHHHCCCeEEEEEe
Confidence            46899985   5999999999999999999988763

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=88.25  E-value=0.2  Score=37.34  Aligned_cols=48  Identities=13%  Similarity=0.266  Sum_probs=36.3

Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEEEeC--C----CEEEEEEcCCCcCcHHHHhh
Q 012808          406 LGQYGFLAKVFSTFEDLGISVDVVATS--E----VSLSLTLDPSKLWSRELIQQ  453 (456)
Q Consensus       406 ~~~~g~~akif~~L~~~gI~V~~IstS--e----~sIsi~V~~~d~~~~~l~~~  453 (456)
                      .+.||+++++...|++.|+||+-++.+  |    ..+++++..++-.=.++.+|
T Consensus         9 ~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQ   62 (76)
T d2f1fa1           9 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQ   62 (76)
T ss_dssp             ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHH
Confidence            479999999999999999999998733  2    56888887665433444443

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=87.56  E-value=0.19  Score=37.56  Aligned_cols=49  Identities=18%  Similarity=0.327  Sum_probs=37.0

Q ss_pred             CCCchhHHHHHHHHHHhCCCcEEEEEeC--C----CEEEEEEcCCCcCcHHHHhh
Q 012808          405 MLGQYGFLAKVFSTFEDLGISVDVVATS--E----VSLSLTLDPSKLWSRELIQQ  453 (456)
Q Consensus       405 m~~~~g~~akif~~L~~~gI~V~~IstS--e----~sIsi~V~~~d~~~~~l~~~  453 (456)
                      ..+.||+++|+...|++.|+||+-++.+  |    ..++++++.++-.-.++++|
T Consensus         9 veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQ   63 (77)
T d2pc6a2           9 MENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQ   63 (77)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHH
T ss_pred             EECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHH
Confidence            3479999999999999999999998733  2    56888887665333445444

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.99  E-value=0.59  Score=34.53  Aligned_cols=47  Identities=11%  Similarity=0.161  Sum_probs=31.8

Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEEE---eC--CCEEEEEEcCCCcCcHHHHhh
Q 012808          406 LGQYGFLAKVFSTFEDLGISVDVVA---TS--EVSLSLTLDPSKLWSRELIQQ  453 (456)
Q Consensus       406 ~~~~g~~akif~~L~~~gI~V~~Is---tS--e~sIsi~V~~~d~~~~~l~~~  453 (456)
                      .+.||+++++-++|+++||||..+.   .+  ...+ ++++-+.-...+++++
T Consensus        11 ~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~-~vi~vD~~~~~~vl~~   62 (78)
T d1ygya3          11 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGAT-ILLRLDQDVPDDVRTA   62 (78)
T ss_dssp             SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEE-EEEEESSCCCHHHHHH
T ss_pred             CCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEE-EEEEcCCCccHHHHHH
Confidence            4789999999999999999999864   22  2223 2333344455555553

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=81.84  E-value=0.73  Score=34.43  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.8

Q ss_pred             CCchhHHHHHHHHHHhCCCcEEEEE
Q 012808          406 LGQYGFLAKVFSTFEDLGISVDVVA  430 (456)
Q Consensus       406 ~~~~g~~akif~~L~~~gI~V~~Is  430 (456)
                      .+.||++++|.+.|+++||||.-+.
T Consensus        19 ~d~PGvla~I~~~l~~~~iNI~~~~   43 (84)
T d1sc6a3          19 ENRPGVLTALNKIFAEQGVNIAAQY   43 (84)
T ss_dssp             ESCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCcCCHHHHHHHHHHHcCCCHHHhc
Confidence            4789999999999999999998774

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.45  E-value=1.1  Score=32.90  Aligned_cols=45  Identities=16%  Similarity=0.178  Sum_probs=31.3

Q ss_pred             EEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe-------CCCEEEEEEcCCCc
Q 012808          398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT-------SEVSLSLTLDPSKL  445 (456)
Q Consensus       398 Isv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist-------Se~sIsi~V~~~d~  445 (456)
                      |.+.   ..+.||+++.+..+++++++||..+.+       .+..+++.++..+.
T Consensus         4 i~i~---~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~   55 (77)
T d1y7pa2           4 LRII---AENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG   55 (77)
T ss_dssp             EEEE---EECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS
T ss_pred             EEEE---EecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcc
Confidence            4455   346899999999999999999999862       36788888865543

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=80.90  E-value=1.1  Score=33.47  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=33.5

Q ss_pred             eEEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEe----CCCEEEEEEc
Q 012808          395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLD  441 (456)
Q Consensus       395 valIsv~g~~m~~~~g~~akif~~L~~~gI~V~~Ist----Se~sIsi~V~  441 (456)
                      ..+|++.|.   +.||+++++...|+++|+||.-+.+    ......+.|+
T Consensus         5 ~~vitv~G~---DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~   52 (86)
T d1u8sa1           5 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS   52 (86)
T ss_dssp             EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEeC---CCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence            457899985   5899999999999999999987752    2344444444

>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: VC0802-like
domain: Hypothetical protein VC0802
species: Vibrio cholerae [TaxId: 666]

Probab=80.37  E-value=2.5  Score=30.02  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             EEEEEEeCCCCCchhHHHHHHHHHHhCCCcEEEEEeCCCEEEEEEcCCCcC
Q 012808          396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLW  446 (456)
Q Consensus       396 alIsv~g~~m~~~~g~~akif~~L~~~gI~V~~IstSe~sIsi~V~~~d~~  446 (456)
                      .+|++.-..-+...|+++++-+.|+++||++..+++-..+-- .|+.++..
T Consensus         4 r~ItL~vhssLe~VGl~A~is~~La~~~Is~nvis~~~hDhi-fVp~~~~~   53 (64)
T d1zvpa2           4 SLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHI-FVQKEKAQ   53 (64)
T ss_dssp             EEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECSSCEEE-EEEGGGHH
T ss_pred             EEEEEecCCchHHHhHHHHHHHHHHHCCCCeEEEEeeccceE-EEchhhHH
Confidence            356666556678999999999999999999999997766543 45555543