Citrus Sinensis ID: 012829

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
Protein Sequence
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Secondary Structure (PSIPRED)
cccccccccEEEEcccEEEEEcccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccEEEEEcccccccccccccccccccccccccEEEEEEccEEEEEEccccccccEEEEEEccccccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEcccEEEEEccccccccHHHHcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEcccccccEEEEEccccEEEcccccccEEEEEcccEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHcEEEcccHHHccccccccccccccEEEEEcccccccccEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mfsfhvsgeviisqepyvcvpnnsssisrcdgcfassnlkkcsacQVVWycgsncqkldwkLHRLECQVLSrldkekrksvtPSIRLMLKLYLRRKlqndnvipstttdNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTicnselrplgtglypVISIinhsclpnavlVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYlftctcprciklgqfddiQESAIlegyrckddgcsgfllrdsddkgftcqqcglvrsKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLtipvyqrvypqfhpllglqyytcgklewflGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Flexible Loop (DISEMBL)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQvlsrldkekrksvtpsiRLMLKLYLRrklqndnvipstttDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLlrdsddkgftCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAqaeasyklsskde
Low Complexity Region (SEG)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIrlmlklylrrklQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Disordered region (IsUnstruct)
****HVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL****************
Disordered Region (DISOPRED)
*FSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE********K******
Disordered Region (DISEMBL)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA*************
Disordered Region (DISPRO)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLSSKDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	455	2.2.26 [Sep-21-2011]
Q7XJS0	480	Histone-lysine N-methyltr	yes	no	0.971	0.920	0.674	0.0
Q8R5A0	433	N-lysine methyltransferas	yes	no	0.879	0.923	0.255	2e-41
E1C5V0	436	N-lysine methyltransferas	no	no	0.879	0.917	0.251	2e-41
Q7M6Z3	433	N-lysine methyltransferas	yes	no	0.879	0.923	0.255	4e-41
Q0P585	433	N-lysine methyltransferas	yes	no	0.876	0.921	0.254	3e-39
C3RZA1	433	N-lysine methyltransferas	yes	no	0.872	0.916	0.253	1e-38
Q9NRG4	433	N-lysine methyltransferas	yes	no	0.872	0.916	0.253	3e-38
Q7ZXV5	430	N-lysine methyltransferas	N/A	no	0.876	0.927	0.261	9e-38
Q6GN68	430	N-lysine methyltransferas	N/A	no	0.872	0.923	0.269	3e-37
Q5BJI7	435	N-lysine methyltransferas	yes	no	0.868	0.908	0.255	8e-37

>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/442 (67%), Positives = 376/442 (85%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + L+RL+KEKRK VTP+IRLM++LY++R LQN+ V+P TTTDNYSLVEALV+HMS+IDEK
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct: 154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSC PNAVLVFE ++AVVRA+ ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C R
Sbjct: 214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           C   G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct: 274 CSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
             +S+K     S  + Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+E
Sbjct: 334 KTVSEKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWRE 393

Query: 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
           AL YC+L +PVYQRVYP  HPL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG 
Sbjct: 394 ALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGI 453

Query: 428 NSPFMKELILKLEEAQAEASYK 449
           ++PFMKEL  KLEEA+AEASYK
Sbjct: 454 STPFMKELSAKLEEARAEASYK 475

Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q8R5A0|SMYD2_MOUSE N-lysine methyltransferase SMYD2 OS=Mus musculus GN=Smyd2 PE=1 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 205/442 (46%), Gaps = 42/442 (9%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMS 122
           H+LEC  +  L +    S T  +RL  ++  ++K+  +     T ++    V    +H+ 
Sbjct: 86  HKLECSSMVVLGENWNPSET--VRLTARILAKQKIHPER----TPSEKLLAVREFESHLD 139

Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
            +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197

Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
           ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ 
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDS 257

Query: 239 YLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKE 298
           Y FTC C  C                              +D D      ++       E
Sbjct: 258 YFFTCECRECT----------------------------TKDKDKAKVEVRKLSSPPQAE 289

Query: 299 EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI 358
            I+ +      + ++        +  E++   ++ ++    ++   +V ++    + + +
Sbjct: 290 AIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGV 349

Query: 359 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418
            + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L +     K++ +A+
Sbjct: 350 CLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409

Query: 419 EILRITHGTNSPFMKELILKLE 440
            I+ + HG + P++ E+  ++E
Sbjct: 410 AIMEVAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|E1C5V0|SMYD2_CHICK N-lysine methyltransferase SMYD2 OS=Gallus gallus GN=SMYD2 PE=3 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 202/437 (46%), Gaps = 37/437 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++ S   Y  V   S   S CDGCFA    L KC  C+  +YC   CQK DW +H+LE
Sbjct: 33  GELLFSCPAYTAVLTVSERGSHCDGCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 92

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K+  +     T ++    V+   +H+  +D 
Sbjct: 93  CAAMCAFGQNWNPSET--VRLTARILAKQKIHPER----TQSEKLLAVKEFESHLDKLDN 146

Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+   IA L +   +  E   N  +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 147 EKRELIQNDIAALHHFYSKHMEYPDNAALVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 206

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
           ++NHSC PN ++ ++G LA VRAV+ +  G EV  SYI+    T  R   L++ Y FTC 
Sbjct: 207 LMNHSCCPNVIVTYKGTLAEVRAVKEIEPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCD 266

Query: 245 CPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304
           C  C                             +++ D +    ++     S E ++ + 
Sbjct: 267 CRECT----------------------------MKEKDKEKLKIRKLNDPPSAEAVRDMI 298

Query: 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 364
                + ++           E++   ++       ++   +V ++    + + + + ++D
Sbjct: 299 KYARNVIEEFRRAKHYKPPSELLEICELSLDKMGAVFEDSNVYMLHMMYQAMGVCLYVQD 358

Query: 365 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424
           W+ AL Y Q  I  Y + YP +   +   +   G+L   L +     K++ +A+ I+ + 
Sbjct: 359 WEGALRYGQKIIRPYSKHYPSYSLNVASMWLKLGRLYMALENRPAGDKALKKAIAIMEVA 418

Query: 425 HGTNSPFMKELILKLEE 441
           HG + P++ E+  +LE+
Sbjct: 419 HGKDHPYISEIKKELED 435

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7M6Z3|SMYD2_RAT N-lysine methyltransferase SMYD2 OS=Rattus norvegicus GN=Smyd2 PE=2 SV=1

 Score =  169 bits (428), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 204/442 (46%), Gaps = 42/442 (9%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMS 122
           H+LEC  +    +    S T  +RL  ++  ++K+  +     T ++    V    +H+ 
Sbjct: 86  HKLECSSMVVFGENWNPSET--VRLTARILAKQKMHPER----TPSEKLLAVREFESHLD 139

Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
            +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKHLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197

Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
           ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ 
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDS 257

Query: 239 YLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKE 298
           Y FTC C  C                              +D D      ++       E
Sbjct: 258 YFFTCECRECT----------------------------TKDKDKAKVEIRKLSNPPQAE 289

Query: 299 EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI 358
            I+ +      + ++        +  E++   ++ ++    ++   +V ++    + + +
Sbjct: 290 AIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGV 349

Query: 359 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418
            + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L +     K++ +A+
Sbjct: 350 CLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409

Query: 419 EILRITHGTNSPFMKELILKLE 440
            I+ I HG + P++ E+  ++E
Sbjct: 410 AIMEIAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q0P585|SMYD2_BOVIN N-lysine methyltransferase SMYD2 OS=Bos taurus GN=SMYD2 PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 201/436 (46%), Gaps = 37/436 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   S   + C+ CFA    L KC  C+  +YC   CQ+ DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVSERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQREDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K+  +     T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPER----TPSEKLLAVKEFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L +   +  E   N+ +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 144 EKRDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
           ++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FTC 
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263

Query: 245 CPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304
           C  C                    KD   +   +R  +D         +VR    + +  
Sbjct: 264 CQECTT------------------KDKDKAKVEIRKLNDPPKAETIRDMVRYARNVIEEF 305

Query: 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 364
                    +  L  C   QE +S           ++   +V ++    + + + + ++D
Sbjct: 306 RRAKHYKSPSELLEICELSQEKMSC----------VFEDSNVYMLHMMYQAMGVCLYMQD 355

Query: 365 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424
           W+ AL Y Q  I  Y + YP +   +   +   G+L   L +     +++ +A+ I+ + 
Sbjct: 356 WEGALRYGQKIIQPYSKHYPLYSLNVASMWLKLGRLYMGLENKAAGERALKKAIAIMEVA 415

Query: 425 HGTNSPFMKELILKLE 440
           HG + P++ E+  ++E
Sbjct: 416 HGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|C3RZA1|SMYD2_PIG N-lysine methyltransferase SMYD2 OS=Sus scrofa GN=SMYD2 PE=2 SV=1

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 203/438 (46%), Gaps = 41/438 (9%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CFA    L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K+  +     T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPER----TPSEKLLAVKEFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK+ L+ + IA L +     L++P+   + +   F+++ CN  TI + EL  LG+ ++P 
Sbjct: 144 EKRDLIQSDIAALHHFYSKHLEFPDS--DSLVVLFAQVNCNGFTIEDEELSHLGSXIFPD 201

Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
           ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FT
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261

Query: 243 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 302
           C C  C                    KD   +   +R  +D         +VR    + +
Sbjct: 262 CECQECTT------------------KDKDKAKVEIRKLNDPPKAEAIRDMVRYARNVIE 303

Query: 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 362
                      +  L  C   QE +S           ++   +V ++    + + + + +
Sbjct: 304 EFRRAKHYKSPSELLEICELSQEKMSC----------VFEDSNVYMLHMMYQAMGVCLYM 353

Query: 363 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422
           +DW+ AL Y Q  I  Y + YP +   +   +   G+L   L +     +++ +A+ I+ 
Sbjct: 354 QDWEGALRYGQKIIQPYSKHYPLYSLNVASMWLKLGRLYMGLENKAAGERALRKAIAIME 413

Query: 423 ITHGTNSPFMKELILKLE 440
           + HG + P++ E+  ++E
Sbjct: 414 VAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9NRG4|SMYD2_HUMAN N-lysine methyltransferase SMYD2 OS=Homo sapiens GN=SMYD2 PE=1 SV=2

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 200/438 (45%), Gaps = 41/438 (9%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K+  +     T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSET--VRLTARILAKQKIHPER----TPSEKLLAVKEFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK+ L+ + IA L +     L +P+   + +   F+++ CN  TI + EL  LG+ ++P 
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201

Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
           ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FT
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261

Query: 243 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 302
           C C  C                    KD   +   +R   D         +VR    + +
Sbjct: 262 CECQECT------------------TKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIE 303

Query: 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 362
                      +  L  C   QE +S+          ++   +V ++    + + + + +
Sbjct: 304 EFRRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLYM 353

Query: 363 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422
           +DW+ AL Y Q  I  Y + YP +   +   +   G+L   L       K++ +A+ I+ 
Sbjct: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413

Query: 423 ITHGTNSPFMKELILKLE 440
           + HG + P++ E+  ++E
Sbjct: 414 VAHGKDHPYISEIKQEIE 431

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1. Monomethylates 'Lys-370' of p53/TP53, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity of p53/TP53. Monomethylates 'Lys-860' of RB1/RB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q7ZXV5|SMY2A_XENLA N-lysine methyltransferase SMYD2-A OS=Xenopus laevis GN=smyd2-a PE=2 SV=1

 Score =  158 bits (399), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 202/436 (46%), Gaps = 37/436 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++ +   Y  V  ++   + CD CFA    L KC  C+  +YC  +CQK DW +H+LE
Sbjct: 28  GELLFTCPAYTYVLTDTERGNHCDFCFARKEGLSKCGKCKQAFYCNVDCQKGDWPMHKLE 87

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K Q +     T ++ +  V+   +H+S +D 
Sbjct: 88  CSAMCSYGQNWCPSET--VRLTARILAKQKTQTER----TPSETFLSVKEFESHLSKLDN 141

Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L     +    + N  +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 142 EKKELIESDIAALHRFYSKNLHYTDNAALVFLFAQVNCNGFTIEDEELSHLGSAIFPDVA 201

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
           ++NHSC PN ++ F+G +A +RAVQ +  G EV  SYI+    T  R   L + Y FTC 
Sbjct: 202 LMNHSCCPNIIVTFKGTVAEIRAVQEIHAGDEVFTSYIDLLYPTEDRNDRLMDSYFFTCD 261

Query: 245 CPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304
           C  C         ++ A LE  +  D      +      K        +V      K   
Sbjct: 262 CRECST-----KQKDPAKLEIRKLSDPPSHQTV------KDMIKYARNIVEEFRRAKHYK 310

Query: 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 364
           +   +L    L+L   G+                 ++   +V ++    + + + + L++
Sbjct: 311 TPSELLEMCELSLDKMGS-----------------VFVDSNVYMLHMMYQAMGVCLYLQE 353

Query: 365 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424
           W  AL Y +  I  Y + YP +   +   +   G+L   L  T    K++ +A+ I++I 
Sbjct: 354 WDGALKYGEKIIKPYSKHYPAYSLNVASMWLKLGRLYMGLEKTTIGTKALKKALAIMQIA 413

Query: 425 HGTNSPFMKELILKLE 440
           HG +  ++ E+  +LE
Sbjct: 414 HGPDHHYIAEIKKELE 429

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q6GN68|SMY2B_XENLA N-lysine methyltransferase SMYD2-B OS=Xenopus laevis GN=smyd2-b PE=2 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 206/438 (47%), Gaps = 41/438 (9%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++ S   Y  V  ++   + CD CF     L KC  C+  +YC  +CQK DW +H+LE
Sbjct: 28  GELLFSCPAYTYVLTDNERGNHCDFCFTRKEGLSKCGKCKQAFYCNVDCQKGDWPMHKLE 87

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL  ++  ++K Q +     T ++ +  V+   +H+S +D 
Sbjct: 88  CSSMCSSGQNWCPSET--VRLTARILAKQKTQTER----TASERFMSVKEFESHLSKLDN 141

Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIAEN-FSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+   I+ L     +      N   E  F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 142 EKKELIENDISALHRFYSKNVHNCDNAALEFLFAQVNCNGFTIEDEELSHLGSAIFPDVA 201

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
           ++NHSC PN ++ ++G +A VRAVQ +  G EV  SYI+    T  R   LK+ Y F+C 
Sbjct: 202 LMNHSCCPNVIVTYKGTVAEVRAVQEIHAGEEVFTSYIDLLYPTEDRNDRLKDSYFFSCD 261

Query: 245 CPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304
           C  C         ++ A LE  R   D  S   +RD            +V      K   
Sbjct: 262 CRECST-----KQKDPAKLE-LRKLSDPPSPQTVRD-----MITYARNVVEEFRRAKHYK 310

Query: 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 364
           +   +L    L+L   G+                 ++   +V ++    + + + + ++D
Sbjct: 311 TPSELLEICELSLDKMGS-----------------VFVDSNVYMLHMMYQAMGVCLYMQD 353

Query: 365 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAI--KSMTEAVEILR 422
           W+ AL Y +  I  Y + YP +   +   +   G+L  ++G  +N I  K++ +A+ I+ 
Sbjct: 354 WEGALKYGEKIIKPYSKHYPAYSLNVASMWLKLGRL--YMGLEKNTIGTKALKKALAIME 411

Query: 423 ITHGTNSPFMKELILKLE 440
           I HG +  ++ E+  +LE
Sbjct: 412 IAHGPDHYYIAEIKKELE 429

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q5BJI7|SMY2A_DANRE N-lysine methyltransferase SMYD2-A OS=Danio rerio GN=smyd2a PE=2 SV=1

 Score =  155 bits (391), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 205/443 (46%), Gaps = 48/443 (10%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ +   Y  V   +    RC+ CF     L KC  C+  +YC   CQ+ DW +H+LE
Sbjct: 30  GDLVFACPAYAYVLTVNERGGRCECCFTRKEGLSKCGKCKQAYYCNVECQRGDWPMHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +RL+ ++ L++K Q +     T ++    +  L AH+  +D 
Sbjct: 90  CSAMCAYGENWCPSET--VRLVARIILKQKHQTER----TPSERVLTLRELEAHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK  +    IA L +     L +P+ +   + E  +++ CN  TI + EL  LG+ L+P 
Sbjct: 144 EKNEMNDTDIAALHHFYSRHLDFPDNAA--LTELIAQVNCNGFTIEDEELSHLGSALFPD 201

Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
           ++++NHSC PN ++ ++G +A VRAVQ +    E+  SYI+    T  R + LK+ Y F 
Sbjct: 202 VALMNHSCSPNVIVTYKGTVAEVRAVQEINPEEEIFNSYIDLLYPTEDRIERLKDSYFFN 261

Query: 243 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 302
           C C  C                  + KD+            K    Q+  +   +EEIK+
Sbjct: 262 CDCKECTS----------------KSKDEA-----------KMEIRQKLSIPPEEEEIKQ 294

Query: 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK----LYHPFSVNLMQTREKLIKI 358
           +     I ++  +       H +  S    I +L  +    ++   +V ++    + + +
Sbjct: 295 MV----IYARNVIEEFRRAKHYKTPSELLEICELSMEKMGAIFAETNVYMLHMMYQAMGV 350

Query: 359 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418
            + ++DW  A+ Y +  I  Y   YP +   +   Y   G+L   L      +K++ +A+
Sbjct: 351 CLYMQDWDGAMKYGEKIIHPYSVHYPPYSLNVASMYLKLGRLYLGLEKRTQGVKALKKAL 410

Query: 419 EILRITHGTNSPFMKELILKLEE 441
            I+ I HG + P++ E+  ++EE
Sbjct: 411 AIMDIAHGKDHPYIDEIKKEMEE 433

Protein-lysine N-methyltransferase that methylates both histones and non-histone proteins. Specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). Has also methyltransferase activity toward non-histone proteins such as p53/TP53 and RB1.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
255545512	482	protein with unknown function [Ricinus c	0.982	0.927	0.776	0.0
302141868	480	unnamed protein product [Vitis vinifera]	0.982	0.931	0.776	0.0
225459467	477	PREDICTED: histone-lysine N-methyltransf	0.975	0.930	0.774	0.0
224082230	458	SET domain protein [Populus trichocarpa]	0.934	0.927	0.743	0.0
449445136	482	PREDICTED: histone-lysine N-methyltransf	0.984	0.929	0.732	0.0
356507670	484	PREDICTED: histone-lysine N-methyltransf	0.980	0.921	0.736	0.0
357461631	511	Histone-lysine N-methyltransferase ASHR1	0.964	0.859	0.672	0.0
297836508	483	hypothetical protein ARALYDRAFT_319740 [	0.975	0.919	0.677	0.0
30680137	480	histone-lysine N-methyltransferase ASHR1	0.971	0.920	0.674	0.0
388518229	477	unknown [Medicago truncatula]	0.890	0.849	0.616	1e-170

>gi|255545512|ref|XP_002513816.1| protein with unknown function [Ricinus communis] gi|223546902|gb|EEF48399.1| protein with unknown function [Ricinus communis]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/447 (77%), Positives = 404/447 (90%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYVCVPNNS++ SRCD CF+SSN+KKCSACQV WYCGS+CQKL+WKLHR+EC
Sbjct: 34  GEVIISQEPYVCVPNNSATESRCDRCFSSSNVKKCSACQVAWYCGSSCQKLEWKLHRIEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + LS+LDK++RK VTPSIRLM++L +RRKLQ++ +I ST TDNY LVEALVAHM DIDEK
Sbjct: 94  EALSKLDKDRRKYVTPSIRLMVRLLIRRKLQSEKIISSTATDNYDLVEALVAHMKDIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLVNLIL+WP+++I EIAENFSKLACNAHTIC+SELRPLGTGLYPV+SIIN
Sbjct: 154 QLVLYAQMANLVNLILRWPDVNIKEIAENFSKLACNAHTICDSELRPLGTGLYPVVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSCLPNAVLVF+GRLAVV  VQH+PKG+EVLISYIETAGSTMTRQKALK+QY FTCTCPR
Sbjct: 214 HSCLPNAVLVFDGRLAVVHTVQHIPKGSEVLISYIETAGSTMTRQKALKQQYFFTCTCPR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           CIK+G  DDIQESAILEGYRCKD+ C+GFLLRDSDD+GF CQQCGL+RSKEE+KK A+E+
Sbjct: 274 CIKMGLLDDIQESAILEGYRCKDNRCNGFLLRDSDDRGFICQQCGLLRSKEEVKKSAAEI 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
              S K     S GN QE VS YK+IEKLQ+KL HPFS +LMQTREKL+K+LMELEDW E
Sbjct: 334 KATSDKASKSISSGNLQEAVSIYKLIEKLQRKLCHPFSTSLMQTREKLLKMLMELEDWGE 393

Query: 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
           AL+YC+LTIPVYQRVYP+FHPLLGLQY++CGKLEW LGDTE AIKS+T+A+++LRITHGT
Sbjct: 394 ALSYCKLTIPVYQRVYPEFHPLLGLQYFSCGKLEWLLGDTEAAIKSLTKALDVLRITHGT 453

Query: 428 NSPFMKELILKLEEAQAEASYKLSSKD 454
            +PFMKEL++KLEEA+AE SY  +S D
Sbjct: 454 KTPFMKELMMKLEEARAEVSYLRASND 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141868|emb|CBI19071.3| unnamed protein product [Vitis vinifera]

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/448 (77%), Positives = 406/448 (90%), Gaps = 1/448 (0%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYV VPNNS+  SRC+GCF SSNLKKCSAC VVWYCGS CQK DWKLHRLEC
Sbjct: 34  GEVIISQEPYVSVPNNSAVHSRCEGCFRSSNLKKCSACHVVWYCGSTCQKSDWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             LSRL+KE++KS+TPSIRLM+KLY+RRKLQ++ ++P+T  DNY+LVEALV+H++DIDEK
Sbjct: 94  NALSRLEKERQKSLTPSIRLMVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHITDIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLVNLILQWP+I++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPVISIIN
Sbjct: 154 QLVLYAQMANLVNLILQWPDINVKEIAENFSKLACNAHTICDGELRPLGTGLYPVISIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSCLPN+VLVFE RLAVVRAVQH+PKG EVLISYIETAGST+TRQKALKEQYLFTCTCPR
Sbjct: 214 HSCLPNSVLVFEERLAVVRAVQHIPKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           C ++GQ+DDIQESAILEGYRCKDD C GFLLRDSDD GF CQQCGLVR+KEEIK++ASE+
Sbjct: 274 CRRMGQYDDIQESAILEGYRCKDDRCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASEL 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
             LS K   ++S  ++ E  S YKMIEKLQ KL+HPFS+NLM+TRE ++KILME++DW+ 
Sbjct: 334 KPLSDKA-TMSSSSHYVEATSIYKMIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRA 392

Query: 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
           AL YC+LTIPVYQRVYP FHPLLGLQYYTCGKLEW LG+TE+A+KS+T+A +IL+ITHGT
Sbjct: 393 ALTYCKLTIPVYQRVYPGFHPLLGLQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGT 452

Query: 428 NSPFMKELILKLEEAQAEASYKLSSKDE 455
           N+PFMKEL+ KLEEA+AEAS+K SSKD+
Sbjct: 453 NTPFMKELLFKLEEARAEASHKRSSKDK 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459467|ref|XP_002284386.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Vitis vinifera]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/448 (77%), Positives = 403/448 (89%), Gaps = 4/448 (0%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVIISQEPYV VPNNS+  SRC+GCF SSNLKKCSAC VVWYCGS CQK DWKLHRLEC
Sbjct: 34  GEVIISQEPYVSVPNNSAVHSRCEGCFRSSNLKKCSACHVVWYCGSTCQKSDWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             LSRL+KE++KS+TPSIRLM+KLY+RRKLQ++ ++P+T  DNY+LVEALV+H++DIDEK
Sbjct: 94  NALSRLEKERQKSLTPSIRLMVKLYMRRKLQSEKIMPTTARDNYNLVEALVSHITDIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLVNLILQWP+I++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPVISIIN
Sbjct: 154 QLVLYAQMANLVNLILQWPDINVKEIAENFSKLACNAHTICDGELRPLGTGLYPVISIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSCLPN+VLVFE RLAVVRAVQH+PKG EVLISYIETAGST+TRQKALKEQYLFTCTCPR
Sbjct: 214 HSCLPNSVLVFEERLAVVRAVQHIPKGTEVLISYIETAGSTITRQKALKEQYLFTCTCPR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           C ++GQ+DDIQESAILEGYRCKDD C GFLLRDSDD GF CQQCGLVR+KEEIK++ASE+
Sbjct: 274 CRRMGQYDDIQESAILEGYRCKDDRCDGFLLRDSDDIGFICQQCGLVRNKEEIKRLASEL 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
             LS K    +S     +  S YKMIEKLQ KL+HPFS+NLM+TRE ++KILME++DW+ 
Sbjct: 334 KPLSDKATMSSS----SQATSIYKMIEKLQTKLFHPFSINLMRTREAILKILMEMKDWRA 389

Query: 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
           AL YC+LTIPVYQRVYP FHPLLGLQYYTCGKLEW LG+TE+A+KS+T+A +IL+ITHGT
Sbjct: 390 ALTYCKLTIPVYQRVYPGFHPLLGLQYYTCGKLEWLLGETEDAVKSLTKAADILQITHGT 449

Query: 428 NSPFMKELILKLEEAQAEASYKLSSKDE 455
           N+PFMKEL+ KLEEA+AEAS+K SSKD+
Sbjct: 450 NTPFMKELLFKLEEARAEASHKRSSKDK 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082230|ref|XP_002306611.1| SET domain protein [Populus trichocarpa] gi|222856060|gb|EEE93607.1| SET domain protein [Populus trichocarpa]

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/448 (74%), Positives = 386/448 (86%), Gaps = 23/448 (5%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+ QEPYVCVPNNSS++SRCDGCFAS +LKKCSACQVVWYCGS CQK +WKLHRLEC
Sbjct: 34  GEVILRQEPYVCVPNNSSTVSRCDGCFASESLKKCSACQVVWYCGSTCQKSEWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             LSRL+KEKRK+VTPSIRLM++LYLRRKLQN+                      D+DEK
Sbjct: 94  NALSRLEKEKRKAVTPSIRLMVRLYLRRKLQNE---------------------MDLDEK 132

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+ANLV+ ILQWPEI++ EIAENFSKLACNAHTIC+ ELRPLGTGLYPV+SIIN
Sbjct: 133 QLVLYAQMANLVHFILQWPEINLKEIAENFSKLACNAHTICDCELRPLGTGLYPVVSIIN 192

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSC+PNAVL FEG+ +VVRAV+H+P+GAEV I+YI+TAGSTMTRQKALKEQY FTCTCPR
Sbjct: 193 HSCMPNAVLTFEGKSSVVRAVEHIPEGAEVSIAYIDTAGSTMTRQKALKEQYFFTCTCPR 252

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           CIK+  +DDIQESAILEGYRCKDD C+GFLLRDS+DKGF CQ CGL RSKEE+K+I  E+
Sbjct: 253 CIKV--YDDIQESAILEGYRCKDDRCNGFLLRDSEDKGFICQTCGLRRSKEEVKRIVCEI 310

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
             +S K L  TS GNH+EV+S YKMIEKLQ +L HPFS++LM+T+E+L+KILMEL DW+E
Sbjct: 311 TAISDKKLKSTSPGNHEEVISLYKMIEKLQMELCHPFSISLMRTQEELLKILMELGDWRE 370

Query: 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
           ALAYC+LTI  YQRVYP+ HPLLGLQYYTCGK+EW LG TE+AIKS+T AV+ILRITHGT
Sbjct: 371 ALAYCRLTITGYQRVYPEPHPLLGLQYYTCGKIEWLLGYTEDAIKSLTRAVDILRITHGT 430

Query: 428 NSPFMKELILKLEEAQAEASYKLSSKDE 455
           NSPFMKEL++KL+EA AEASY LSSKDE
Sbjct: 431 NSPFMKELMMKLDEAHAEASYNLSSKDE 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445136|ref|XP_004140329.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus] gi|449502473|ref|XP_004161650.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Cucumis sativus]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/448 (73%), Positives = 380/448 (84%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GE IISQEPYVCVPNNS   SRCD CFAS NLKKCSAC+V WYC S CQK +WKLHRLEC
Sbjct: 34  GEEIISQEPYVCVPNNSPVESRCDRCFASINLKKCSACKVAWYCSSVCQKSEWKLHRLEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             L+RLDK++ KSVTPSIRLM+KL++RRKLQ++ VIP   TDNY LVE L+ HMS IDEK
Sbjct: 94  DALARLDKDRHKSVTPSIRLMIKLFIRRKLQSEKVIPMAATDNYKLVEELIDHMSGIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           QL+LYAQ+  LVN ILQWP +++ EIA NFSKLACNAHTIC+SELRPLGTGLYPVISIIN
Sbjct: 154 QLVLYAQMGTLVNFILQWPGMNVKEIAVNFSKLACNAHTICDSELRPLGTGLYPVISIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSCLPNAVLVFEGR AVVRAVQH+P GAEV ISYIETAGSTMTRQK LKE YLFTCTC R
Sbjct: 214 HSCLPNAVLVFEGRTAVVRAVQHIPAGAEVSISYIETAGSTMTRQKTLKENYLFTCTCSR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           C+K+ Q D+I+ESAILEGYRC++D C GFLLR+SDD GFTCQQCGLVRSKE+IK IAS++
Sbjct: 274 CVKVAQEDEIKESAILEGYRCRNDQCDGFLLRNSDDTGFTCQQCGLVRSKEDIKNIASKI 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
             +S +     S  ++ E +  Y+ +EKLQ+ L HP+S++LMQTREKL+KI MELE+W +
Sbjct: 334 KSISDEASTSLSSQSYAEALFMYEKVEKLQRILCHPYSISLMQTREKLLKISMELENWTK 393

Query: 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
           AL YC+LTI VYQ++YP  HPLLGLQ+YTCGKLEW LG TE+AIKS T+A +ILRITHGT
Sbjct: 394 ALTYCKLTISVYQKLYPGIHPLLGLQFYTCGKLEWLLGHTEDAIKSYTKAFDILRITHGT 453

Query: 428 NSPFMKELILKLEEAQAEASYKLSSKDE 455
           NS FMKEL+LKLEEA+AEASYKLSS D+
Sbjct: 454 NSSFMKELLLKLEEARAEASYKLSSTDD 481

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507670|ref|XP_003522587.1| PREDICTED: histone-lysine N-methyltransferase ASHR1-like [Glycine max]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/452 (73%), Positives = 386/452 (85%), Gaps = 6/452 (1%)

Query: 8   GEVIISQEPYVCVPNNSS--SISRCDGCFASSN---LKKCSACQVVWYCGSNCQKLDWKL 62
           GEVIISQEPYVCVPNNSS     RCDGCF + N   L +CS CQ+ +YCG+ CQ+ +WKL
Sbjct: 34  GEVIISQEPYVCVPNNSSVSPQKRCDGCFTTINNNVLSRCSRCQLAFYCGTACQRSEWKL 93

Query: 63  HRLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMS 122
           HRLEC+VLS L K KRKS+TPSIRLML+LYLRRKLQND +IPST  DNY+LVEALVAHMS
Sbjct: 94  HRLECEVLSSLHKYKRKSLTPSIRLMLRLYLRRKLQNDKIIPSTAMDNYNLVEALVAHMS 153

Query: 123 DIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           DI E+QL+LYAQ+ANLVN IL+WP I+I EIAENFSK ACNAHTIC+SELRP+GTGLYPV
Sbjct: 154 DITEEQLVLYAQMANLVNSILEWPGINIKEIAENFSKFACNAHTICDSELRPVGTGLYPV 213

Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
           ISIINHSCLPN+VLVFEG  A+VRAVQH+P G EVLISYIETA STMTRQKALKEQYLFT
Sbjct: 214 ISIINHSCLPNSVLVFEGSSALVRAVQHIPSGTEVLISYIETAESTMTRQKALKEQYLFT 273

Query: 243 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 302
           CTCPRC K+GQ+DDIQESAILEGY+CK + C GFLLR +D KGF CQ CGL+R KEEIK+
Sbjct: 274 CTCPRCSKVGQYDDIQESAILEGYKCKSEKCGGFLLRTTDGKGFQCQGCGLIRDKEEIKR 333

Query: 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 362
           I +E+ +LS+   +  S   +QE +S YK IEKLQ +L+HP S+NLM TREK++K LMEL
Sbjct: 334 ITTEIKLLSEDA-SKPSATYYQEAISIYKRIEKLQTELFHPLSINLMHTREKILKSLMEL 392

Query: 363 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422
           E W EALAYC+LTIP YQRVYP  HPL GLQYYTCGKLEW+LGDTE A+KS+T+AV+ILR
Sbjct: 393 EHWTEALAYCKLTIPFYQRVYPAVHPLPGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILR 452

Query: 423 ITHGTNSPFMKELILKLEEAQAEASYKLSSKD 454
           ITHGTN+PFMK+L++KLEEA+ EASYK SSK+
Sbjct: 453 ITHGTNTPFMKDLLMKLEEARTEASYKFSSKE 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461631|ref|XP_003601097.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula] gi|355490145|gb|AES71348.1| Histone-lysine N-methyltransferase ASHR1 [Medicago truncatula]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/482 (67%), Positives = 381/482 (79%), Gaps = 43/482 (8%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLH 63
           FH  G+VIISQEPYVCVP       RCDGCF+++NL KCS CQVVWYCG+ CQK +WKLH
Sbjct: 31  FH-PGDVIISQEPYVCVPTQK----RCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLH 85

Query: 64  RLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAH--- 120
           RLECQ LSRLD  KRKSVTPSIRLMLKLYLRRKLQ+  +IPST  DNY LVEALVA    
Sbjct: 86  RLECQALSRLDSNKRKSVTPSIRLMLKLYLRRKLQDQKIIPSTAMDNYKLVEALVARILF 145

Query: 121 ----------------------------------MSDIDEKQLLLYAQIANLVNLILQWP 146
                                             MSDI E+QL+LYAQ+ANLV+LILQWP
Sbjct: 146 IIVVLSSRAMIVEFSLLTNMSVVIVLFNTYFHEDMSDIKEEQLVLYAQMANLVHLILQWP 205

Query: 147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 206
           EI+I EIA  FSK ACNAHT+C+SELRPLGTGLYPV+SIINHSCLPN+VLVF+GR A VR
Sbjct: 206 EINIKEIANFFSKFACNAHTVCDSELRPLGTGLYPVVSIINHSCLPNSVLVFDGREASVR 265

Query: 207 AVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGY 266
           A+QH+PKG EVLISYIETAGST+TRQKAL+EQYLF C CP C K+GQ++D++E+AILEGY
Sbjct: 266 ALQHIPKGTEVLISYIETAGSTVTRQKALREQYLFQCVCPLCSKVGQYEDVRENAILEGY 325

Query: 267 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEV 326
           RCK++ C GFLLR +D K F CQ+CGLVR KEEIK+IA+E+  L ++    +S  +H E 
Sbjct: 326 RCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLLEEASKPSSNDSH-EA 384

Query: 327 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386
           +S +KMIEKLQ KLYHPFS+NLMQTRE ++K LM+LE W+EALAYC+LTIP+YQRVYP  
Sbjct: 385 ISIHKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEYWREALAYCKLTIPIYQRVYPAV 444

Query: 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446
           HPLLGLQYYTCGKLEW+LGDTE AIKS+T+AV+ILRITHGT +PF+KEL + L EA+AEA
Sbjct: 445 HPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDILRITHGTKTPFVKELSMMLVEARAEA 504

Query: 447 SY 448
           S+
Sbjct: 505 SF 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836508|ref|XP_002886136.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata] gi|297331976|gb|EFH62395.1| hypothetical protein ARALYDRAFT_319740 [Arabidopsis lyrata subsp. lyrata]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/444 (67%), Positives = 378/444 (85%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+S  SRCDGCF ++NLKKCS CQVVWYCGS CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSLESRCDGCFKTNNLKKCSGCQVVWYCGSFCQKSEWKLHRHEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + L+RL+KEKRK VTP+IRLM+KLY++R LQN+ V+P T+TDNYSLVEALV+HMS+IDEK
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVKLYIKRNLQNEKVLPITSTDNYSLVEALVSHMSEIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct: 154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSC PNAVLVFE ++AVVRA+ ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C R
Sbjct: 214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           C  +G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct: 274 CSNVGKPHDIEESAILEGYRCSNEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
             +S+K  A  S  N Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K+LM+LE W+E
Sbjct: 334 KTVSEKAHASPSAENKQAAIELYKTIEKLQVKLYHSFSITLMRTREKLLKMLMDLEIWRE 393

Query: 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
           AL YC+L +PVYQRVYP  HPL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HGT
Sbjct: 394 ALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGT 453

Query: 428 NSPFMKELILKLEEAQAEASYKLS 451
           ++PFMKEL  KLEEA+AEASYKL+
Sbjct: 454 STPFMKELSAKLEEARAEASYKLA 477

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680137|ref|NP_849969.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana] gi|94707144|sp|Q7XJS0.2|ASHR1_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR1; AltName: Full=ASH1-related protein 1; AltName: Full=Protein SET DOMAIN GROUP 37 gi|145651792|gb|ABP88121.1| At2g17900 [Arabidopsis thaliana] gi|330251606|gb|AEC06700.1| histone-lysine N-methyltransferase ASHR1 [Arabidopsis thaliana]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/442 (67%), Positives = 376/442 (85%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct: 34  GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
           + L+RL+KEKRK VTP+IRLM++LY++R LQN+ V+P TTTDNYSLVEALV+HMS+IDEK
Sbjct: 94  KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEK 153

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
           Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct: 154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query: 188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
           HSC PNAVLVFE ++AVVRA+ ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C R
Sbjct: 214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query: 248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
           C   G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct: 274 CSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query: 308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
             +S+K     S  + Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+E
Sbjct: 334 KTVSEKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWRE 393

Query: 368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
           AL YC+L +PVYQRVYP  HPL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG 
Sbjct: 394 ALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGI 453

Query: 428 NSPFMKELILKLEEAQAEASYK 449
           ++PFMKEL  KLEEA+AEASYK
Sbjct: 454 STPFMKELSAKLEEARAEASYK 475

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518229|gb|AFK47176.1| unknown [Medicago truncatula]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/482 (61%), Positives = 351/482 (72%), Gaps = 77/482 (15%)

Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLH 63
           FH  G+VIISQEPYVCVP       RCDGCF+++NL KCS CQVVWYCG+ CQK +WKLH
Sbjct: 31  FH-PGDVIISQEPYVCVPTQK----RCDGCFSTTNLSKCSRCQVVWYCGTPCQKSEWKLH 85

Query: 64  RLECQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAH--- 120
           RLECQ LSRLD  KRKSVTPSIRLMLKLYLRRKLQ+  +IPST  DNY LVEALVA    
Sbjct: 86  RLECQALSRLDSNKRKSVTPSIRLMLKLYLRRKLQDQKIIPSTAMDNYKLVEALVARILF 145

Query: 121 ----------------------------------MSDIDEKQLLLYAQIANLVNLILQWP 146
                                             MSDI E+QL+LYAQ+ANLV+LILQWP
Sbjct: 146 IIVVLSSRAMIVEFSLLTNMSVVIVLFNTYFHEDMSDIKEEQLVLYAQMANLVHLILQWP 205

Query: 147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVR 206
           EI+I EIA  FSK ACNAHT+C+SELRPLGTGLYPV+SIINHSCLPN+VLVF+GR A+VR
Sbjct: 206 EINIKEIANFFSKFACNAHTVCDSELRPLGTGLYPVVSIINHSCLPNSVLVFDGREALVR 265

Query: 207 AVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGY 266
           A+QH+PKG E                                   GQ++D++E+AILEGY
Sbjct: 266 ALQHIPKGTE-----------------------------------GQYEDVRENAILEGY 290

Query: 267 RCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEV 326
           RCK++ C GFLLR +D K F CQ+CGLVR KEEIK+IA+E+  L ++    +S GN  E 
Sbjct: 291 RCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLLEEASKPSSNGNSHEA 350

Query: 327 VSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF 386
           +S +KMIEKLQ KLYHPFS+NLMQTRE ++K LM+LE W+EALAYC+LTIP+YQRVYP  
Sbjct: 351 ISIHKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEYWREALAYCKLTIPIYQRVYPAV 410

Query: 387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA 446
           HPLLGLQYYTCGKLEW+LGDTE AIKS+T+AV+ILRITHGT +PF+KEL + L EA+AEA
Sbjct: 411 HPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDILRITHGTKTPFVKELSMMLVEARAEA 470

Query: 447 SY 448
           S+
Sbjct: 471 SF 472

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
TAIR|locus:2827831	480	SDG37 "SET domain group 37" [A	0.971	0.920	0.658	1.5e-163
UNIPROTKB|E1C5V0	436	SMYD2 "N-lysine methyltransfer	0.514	0.536	0.334	5.9e-44
MGI|MGI:1915889	433	Smyd2 "SET and MYND domain con	0.516	0.542	0.338	5.9e-44
RGD|727785	433	Smyd2 "SET and MYND domain con	0.518	0.545	0.328	2e-43
RGD|1562635	428	Smyd3 "SET and MYND domain con	0.507	0.539	0.312	9.5e-42
UNIPROTKB|Q0P585	433	SMYD2 "N-lysine methyltransfer	0.520	0.547	0.321	1.2e-41
MGI|MGI:1916976	428	Smyd3 "SET and MYND domain con	0.507	0.539	0.316	1.2e-41
UNIPROTKB|C3RZA1	433	SMYD2 "N-lysine methyltransfer	0.516	0.542	0.318	3.2e-41
UNIPROTKB|F1S2Y3	431	SMYD2 "N-lysine methyltransfer	0.516	0.545	0.318	3.2e-41
UNIPROTKB|Q9H7B4	428	SMYD3 "Histone-lysine N-methyl	0.507	0.539	0.316	3.2e-41

TAIR|locus:2827831 SDG37 "SET domain group 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
 Identities = 291/442 (65%), Positives = 365/442 (82%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
             GEVI+SQ+PY+CVPNN+SS SRCDGCF ++NLKKCSACQVVWYCGS+CQK +WKLHR EC
Sbjct:    34 GEVILSQKPYICVPNNTSSESRCDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93

Query:    68 QVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
             + L+RL+KEKRK VTP+I            QN+ V+P TTTDNYSLVEALV+HMS+IDEK
Sbjct:    94 KALTRLEKEKRKFVTPTIRLMVRLYIKRNLQNEKVLPITTTDNYSLVEALVSHMSEIDEK 153

Query:   128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
             Q+LLYAQ+ANLVNLILQ+P + + EIAENFSK +CNAH+IC+SELRP G GL+P++SIIN
Sbjct:   154 QMLLYAQMANLVNLILQFPSVDLREIAENFSKFSCNAHSICDSELRPQGIGLFPLVSIIN 213

Query:   188 HSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPR 247
             HSC PNAVLVFE ++AVVRA+ ++ K +E+ ISYIETAGST+TRQK+LKEQYLF C C R
Sbjct:   214 HSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSLKEQYLFHCQCAR 273

Query:   248 CIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEV 307
             C   G+  DI+ESAILEGYRC ++ C+GFLLRD ++KGF CQ+C L+RSKEE+KK+AS++
Sbjct:   274 CSNFGKPHDIEESAILEGYRCANEKCTGFLLRDPEEKGFVCQKCLLLRSKEEVKKLASDL 333

Query:   308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKE 367
               +S+K     S  + Q  +  YK IEKLQ KLYH FS+ LM+TREKL+K+LM++E W+E
Sbjct:   334 KTVSEKAPTSPSAEDKQAAIELYKTIEKLQVKLYHSFSIPLMRTREKLLKMLMDVEIWRE 393

Query:   368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT 427
             AL YC+L +PVYQRVYP  HPL+GLQ+YT GKLEW LG+T+ A+ S+ +A +ILRI+HG 
Sbjct:   394 ALNYCRLIVPVYQRVYPATHPLIGLQFYTQGKLEWLLGETKEAVSSLIKAFDILRISHGI 453

Query:   428 NSPFMKELILKLEEAQAEASYK 449
             ++PFMKEL  KLEEA+AEASYK
Sbjct:   454 STPFMKELSAKLEEARAEASYK 475

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C5V0 SMYD2 "N-lysine methyltransferase SMYD2" [Gallus gallus (taxid:9031)]

 Score = 365 (133.5 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 82/245 (33%), Positives = 121/245 (49%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
             GE++ S   Y  V   S   S CDGCFA    L KC  C+  +YC   CQK DW +H+LE
Sbjct:    33 GELLFSCPAYTAVLTVSERGSHCDGCFARKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 92

Query:    67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHMSDID 125
             C  +    +    S T  +                + P  T     L V+   +H+  +D
Sbjct:    93 CAAMCAFGQNWNPSETVRLTARILA-------KQKIHPERTQSEKLLAVKEFESHLDKLD 145

Query:   126 -EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVI 183
              EK+ L+   IA L +   +  E   N  +   F+++ CN  TI + EL  LG+ ++P +
Sbjct:   146 NEKRELIQNDIAALHHFYSKHMEYPDNAALVVLFAQVNCNGFTIEDEELSHLGSAIFPDV 205

Query:   184 SIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTC 243
             +++NHSC PN ++ ++G LA VRAV+ +  G EV  SYI+    T  R   L++ Y FTC
Sbjct:   206 ALMNHSCCPNVIVTYKGTLAEVRAVKEIEPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTC 265

Query:   244 TCPRC 248
              C  C
Sbjct:   266 DCREC 270

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

MGI|MGI:1915889 Smyd2 "SET and MYND domain containing 2" [Mus musculus (taxid:10090)]

 Score = 364 (133.2 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 85/251 (33%), Positives = 126/251 (50%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct:    27 FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHM 121
             H+LEC  +  L +    S T  +                + P  T     L V    +H+
Sbjct:    86 HKLECSSMVVLGENWNPSETVRLTARILA-------KQKIHPERTPSEKLLAVREFESHL 138

Query:   122 SDID-EKQLLLYAQIANL---VNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
               +D EK+ L+ + IA L    +  L++P+ S   +   F+++ CN  TI + EL  LG+
Sbjct:   139 DKLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGS 196

Query:   178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
              ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++
Sbjct:   197 AIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRD 256

Query:   238 QYLFTCTCPRC 248
              Y FTC C  C
Sbjct:   257 SYFFTCECREC 267

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000993 "RNA polymerase II core binding" evidence=IDA

GO:0002039 "p53 binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016571 "histone methylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISO

GO:0018027 "peptidyl-lysine dimethylation" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=IDA

RGD|727785 Smyd2 "SET and MYND domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 358 (131.1 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 82/250 (32%), Positives = 124/250 (49%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct:    27 FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMS 122
             H+LEC  +    +    S T  +            +       T ++    V    +H+ 
Sbjct:    86 HKLECSSMVVFGENWNPSETVRLTARILAKQKMHPER------TPSEKLLAVREFESHLD 139

Query:   123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
              +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct:   140 KLDNEKKDLIQSDIAALHQFYSKHLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197

Query:   179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
             ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ 
Sbjct:   198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDS 257

Query:   239 YLFTCTCPRC 248
             Y FTC C  C
Sbjct:   258 YFFTCECREC 267

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISO;ISS

GO:0002039 "p53 binding" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=ISO;ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO;ISS

GO:0016571 "histone methylation" evidence=ISO

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISO;ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISO;ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISO;ISS

RGD|1562635 Smyd3 "SET and MYND domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 319 (117.4 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 78/250 (31%), Positives = 124/250 (49%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
             GE++   +P     +  S    CD C      L +CS C++  YC + CQK  W  H+ E
Sbjct:    27 GELLFRSDPLAYTVSKGSRGVVCDRCLLGKEKLMRCSQCRIAKYCSAKCQKKAWPDHKRE 86

Query:    67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDE 126
             C+ L    K  +    P                    PS +   YS  + L +++S + E
Sbjct:    87 CKCL----KSCKPRYPPDSVRLLGRVVVKLMDGK---PSESEKLYSFYD-LESNISKLTE 138

Query:   127 ------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
                   +QL +  Q  +   +    Q P  S  ++ E F+K+ CN+ TICN+E++ +G G
Sbjct:   139 DKKEGLRQLAMTFQHFMREEIQDASQLPP-SF-DLFEAFAKVICNSFTICNAEMQEVGVG 196

Query:   179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
             LYP +S++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++Q
Sbjct:   197 LYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYLDMLMTSEERRKQLRDQ 256

Query:   239 YLFTCTCPRC 248
             Y F C C RC
Sbjct:   257 YCFECDCIRC 266

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISO

UNIPROTKB|Q0P585 SMYD2 "N-lysine methyltransferase SMYD2" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 80/249 (32%), Positives = 124/249 (49%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             F V G+++ S   Y  V   S   + C+ CFA    L KC  C+  +YC   CQ+ DW +
Sbjct:    27 FQV-GDLLFSCPAYAYVLTVSERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQREDWPM 85

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHM 121
             H+LEC  +    +    S T  +                + P  T     L V+   +H+
Sbjct:    86 HKLECSPMVVFGENWNPSETVRLTARILA-------KQKIHPERTPSEKLLAVKEFESHL 138

Query:   122 SDID-EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGL 179
               +D EK+ L+ + IA L +   +  E   N+ +   F+++ CN  TI + EL  LG+ +
Sbjct:   139 DKLDNEKRDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAI 198

Query:   180 YPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQY 239
             +P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y
Sbjct:   199 FPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEEVFTSYIDLLYPTEDRNDRLRDSY 258

Query:   240 LFTCTCPRC 248
              FTC C  C
Sbjct:   259 FFTCECQEC 267

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0002039 "p53 binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1916976 Smyd3 "SET and MYND domain containing 3" [Mus musculus (taxid:10090)]

 Score = 319 (117.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 79/250 (31%), Positives = 124/250 (49%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
             GE++   +P        S    CD C      L +CS C++  YC + CQK  W  HR E
Sbjct:    27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRIAKYCSAKCQKKAWPDHRRE 86

Query:    67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDE 126
             C  L      K +    S+            +     PS +   YS  + L +++S + E
Sbjct:    87 CSCLKSC---KPRYPPDSVRLLGRVIVKLMDEK----PSESEKLYSFYD-LESNISKLTE 138

Query:   127 ------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
                   +QL +  Q  +   +    Q P  S  ++ E F+K+ CN+ TICN+E++ +G G
Sbjct:   139 DKKEGLRQLAMTFQHFMREEIQDASQLPP-SF-DLFEAFAKVICNSFTICNAEMQEVGVG 196

Query:   179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
             LYP +S++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++Q
Sbjct:   197 LYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYLDMLMTSEERRKQLRDQ 256

Query:   239 YLFTCTCPRC 248
             Y F C C RC
Sbjct:   257 YCFECDCIRC 266

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|C3RZA1 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)]

 Score = 343 (125.8 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 80/251 (31%), Positives = 126/251 (50%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             F V G+++ S   Y  V   +   + C+ CFA    L KC  C+  +YC   CQK DW +
Sbjct:    27 FQV-GDLLFSCPAYAYVLTVNERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQKEDWPM 85

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHM 121
             H+LEC  +    +    S T  +                + P  T     L V+   +H+
Sbjct:    86 HKLECSPMVVFGENWNPSETVRLTARILA-------KQKIHPERTPSEKLLAVKEFESHL 138

Query:   122 SDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
               +D EK+ L+ + IA L +     L++P+   + +   F+++ CN  TI + EL  LG+
Sbjct:   139 DKLDNEKRDLIQSDIAALHHFYSKHLEFPDS--DSLVVLFAQVNCNGFTIEDEELSHLGS 196

Query:   178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
              ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++
Sbjct:   197 XIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEEVFTSYIDLLYPTEDRNDRLRD 256

Query:   238 QYLFTCTCPRC 248
              Y FTC C  C
Sbjct:   257 SYFFTCECQEC 267

GO:0010452 "histone H3-K36 methylation" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0018027 "peptidyl-lysine dimethylation" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0018026 "peptidyl-lysine monomethylation" evidence=ISS

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0000993 "RNA polymerase II core binding" evidence=ISS

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1S2Y3 SMYD2 "N-lysine methyltransferase SMYD2" [Sus scrofa (taxid:9823)]

 Score = 343 (125.8 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 80/251 (31%), Positives = 126/251 (50%)

Query:     4 FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
             F V G+++ S   Y  V   +   + C+ CFA    L KC  C+  +YC   CQK DW +
Sbjct:    25 FQV-GDLLFSCPGYAYVLTVNERGNHCEFCFARKEGLSKCGRCKQAFYCNVECQKEDWPM 83

Query:    63 HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSL-VEALVAHM 121
             H+LEC  +    +    S T  +                + P  T     L V+   +H+
Sbjct:    84 HKLECSPMVVFGENWNPSETVRLTARILA-------KQKIHPERTPSEKLLAVKEFESHL 136

Query:   122 SDID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
               +D EK+ L+ + IA L +     L++P+   + +   F+++ CN  TI + EL  LG+
Sbjct:   137 DKLDNEKRDLIQSDIAALHHFYSKHLEFPDS--DSLVVLFAQVNCNGFTIEDEELSHLGS 194

Query:   178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
              ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++
Sbjct:   195 AIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGEEVFTSYIDLLYPTEDRNDRLRD 254

Query:   238 QYLFTCTCPRC 248
              Y FTC C  C
Sbjct:   255 SYFFTCECQEC 265

GO:0046975 "histone methyltransferase activity (H3-K36 specific)" evidence=IEA

GO:0043516 "regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0018027 "peptidyl-lysine dimethylation" evidence=IEA

GO:0018026 "peptidyl-lysine monomethylation" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0000993 "RNA polymerase II core binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9H7B4 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 79/250 (31%), Positives = 125/250 (50%)

Query:     8 GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
             GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct:    27 GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86

Query:    67 CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDIDE 126
             C+ L      K +    S+              D   PS +   YS  + L ++++ + E
Sbjct:    87 CKCLKSC---KPRYPPDSVRLLGRVVFKLM---DGA-PSESEKLYSFYD-LESNINKLTE 138

Query:   127 ------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
                   +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G G
Sbjct:   139 DKKEGLRQLVMTFQHFMREEIQDASQLPPAF--DLFEAFAKVICNSFTICNAEMQEVGVG 196

Query:   179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
             LYP IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++Q
Sbjct:   197 LYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQ 256

Query:   239 YLFTCTCPRC 248
             Y F C C RC
Sbjct:   257 YCFECDCFRC 266

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XJS0	ASHR1_ARATH	2, ., 1, ., 1, ., 4, 3	0.6742	0.9714	0.9208	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.43	0.991
3rd Layer	2.1.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015328001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (480 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	455
pfam01753	39	pfam01753, zf-MYND, MYND finger	2e-10
pfam00856	113	pfam00856, SET, SET domain	7e-09
smart00317	124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	1e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 30 CDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          C  C   +  L +CS C+ V+YC   CQK DW  H+ EC
Sbjct: 1  CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39

>gnl|CDD|216155 pfam00856, SET, SET domain

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 165 HTICNSELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEVLIS 220
            +  +SE     TGL  V   INHSC PN  + F     G   VVRA++ +  G E+ I 
Sbjct: 52  LSRLDSEYDIDATGLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTID 111

Query: 221 Y 221
           Y
Sbjct: 112 Y 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 176 GTGLYPVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISYI 222
                 +   INHSC PN  L+F         V+ A++ +  G E+ I Y 
Sbjct: 68  ARRKGNLARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYG 118

Putative methyl transferase, based on outlier plant homologues. Length = 124

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD 406
           +L      L  +L  L D+ EAL   +  + +  R   + HP          +L   LGD
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGD 61

Query: 407 TENAIKSMTEAVEILR 422
            + A++ + +A+ +  
Sbjct: 62  YDEALEYLEKALALRE 77

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	455
KOG2084	482	consensus Predicted histone tail methylase contain	99.94
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.52
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.49
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	99.38
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.26
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	99.11
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	98.95
KOG2589	453	consensus Histone tail methylase [Chromatin struct	98.84
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.77
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.6
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.5
PRK15359	144	type III secretion system chaperone protein SscB;	98.49
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.45
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.45
KOG0553	304	consensus TPR repeat-containing protein [General f	98.43
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	98.38
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.35
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.31
PRK10803	263	tol-pal system protein YbgF; Provisional	98.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.24
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	98.23
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.22
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.21
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.18
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.14
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.03
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.99
COG2940	480	Proteins containing SET domain [General function p	97.99
PF13512	142	TPR_18: Tetratricopeptide repeat	97.96
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.9
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.9
KOG1080	1005	consensus Histone H3 (Lys4) methyltransferase comp	97.88
KOG4442	729	consensus Clathrin coat binding protein/Huntingtin	97.87
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.86
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.84
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.83
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.78
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.77
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.7
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.69
PRK11189	296	lipoprotein NlpI; Provisional	97.65
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.64
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.6
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.6
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	97.57
PF13371	73	TPR_9: Tetratricopeptide repeat	97.56
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.52
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.48
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.45
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.44
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.44
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.4
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.38
PRK15331	165	chaperone protein SicA; Provisional	97.36
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.34
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.34
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.33
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.32
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.22
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.21
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.21
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.13
KOG1082	364	consensus Histone H3 (Lys9) methyltransferase SUV3	97.04
PRK04841	903	transcriptional regulator MalT; Provisional	97.02
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.02
KOG4234	271	consensus TPR repeat-containing protein [General f	97.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.97
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.96
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	96.91
PRK12370	553	invasion protein regulator; Provisional	96.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.85
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.84
KOG1337	472	consensus N-methyltransferase [General function pr	96.84
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.84
PRK10803	263	tol-pal system protein YbgF; Provisional	96.83
PRK12370	553	invasion protein regulator; Provisional	96.78
KOG1125	579	consensus TPR repeat-containing protein [General f	96.78
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.77
PF12688	120	TPR_5: Tetratrico peptide repeat	96.7
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.63
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.55
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.46
KOG1141	1262	consensus Predicted histone methyl transferase [Ch	96.4
PRK15359	144	type III secretion system chaperone protein SscB;	96.39
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.29
PRK04841	903	transcriptional regulator MalT; Provisional	96.24
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.2
KOG1083	1306	consensus Putative transcription factor ASH1/LIN-5	96.2
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.19
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.19
PRK14574	822	hmsH outer membrane protein; Provisional	96.18
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.16
PRK11189	296	lipoprotein NlpI; Provisional	96.15
KOG1126	638	consensus DNA-binding cell division cycle control	96.14
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.14
KOG2003	840	consensus TPR repeat-containing protein [General f	96.13
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.11
KOG1085	392	consensus Predicted methyltransferase (contains a	96.1
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.08
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.07
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.03
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.99
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.98
KOG1129	478	consensus TPR repeat-containing protein [General f	95.93
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.91
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.88
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.86
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.83
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.81
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.75
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	95.57
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.55
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.51
KOG1125	579	consensus TPR repeat-containing protein [General f	95.48
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.47
KOG4555	175	consensus TPR repeat-containing protein [Function	95.46
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.44
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.36
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.34
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.31
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.31
KOG1126	638	consensus DNA-binding cell division cycle control	95.28
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.14
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.09
PF13371	73	TPR_9: Tetratricopeptide repeat	95.04
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.97
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.88
KOG2076	895	consensus RNA polymerase III transcription factor	94.67
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.64
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.49
PLN03158	396	methionine aminopeptidase; Provisional	94.45
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	94.45
KOG2076	895	consensus RNA polymerase III transcription factor	94.37
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	94.29
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.27
KOG2857	157	consensus Predicted MYND Zn-finger protein/hormone	94.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.25
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.25
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.11
KOG0547	606	consensus Translocase of outer mitochondrial membr	94.06
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.05
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	94.03
KOG4648	536	consensus Uncharacterized conserved protein, conta	94.0
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	93.95
PF13428	44	TPR_14: Tetratricopeptide repeat	93.76
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	93.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	93.64
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.59
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	93.57
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	93.48
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.47
KOG0553	304	consensus TPR repeat-containing protein [General f	93.44
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.32
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	93.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.17
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	93.1
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	92.98
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.92
KOG1079	739	consensus Transcriptional repressor EZH1 [Transcri	92.88
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.61
KOG1585	308	consensus Protein required for fusion of vesicles	92.32
PRK14574	822	hmsH outer membrane protein; Provisional	92.31
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	92.31
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.25
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.22
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.08
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	92.01
PRK15331	165	chaperone protein SicA; Provisional	92.01
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.8
PF13428	44	TPR_14: Tetratricopeptide repeat	91.75
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.71
KOG1128	777	consensus Uncharacterized conserved protein, conta	91.63
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	91.35
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.35
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	91.21
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	91.19
KOG0508	615	consensus Ankyrin repeat protein [General function	90.94
KOG3060	289	consensus Uncharacterized conserved protein [Funct	90.83
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.81
KOG1129	478	consensus TPR repeat-containing protein [General f	90.61
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.5
KOG4555	175	consensus TPR repeat-containing protein [Function	90.45
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.34
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	90.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	90.17
COG4783	484	Putative Zn-dependent protease, contains TPR repea	89.97
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	89.94
KOG1585	308	consensus Protein required for fusion of vesicles	89.85
KOG2003	840	consensus TPR repeat-containing protein [General f	89.75
KOG1338	466	consensus Uncharacterized conserved protein [Funct	89.74
PF13512	142	TPR_18: Tetratricopeptide repeat	89.71
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	89.58
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	89.53
KOG3364	149	consensus Membrane protein involved in organellar	89.49
PLN03077	857	Protein ECB2; Provisional	89.3
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	89.08
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	88.91
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	88.85
PF13431	34	TPR_17: Tetratricopeptide repeat	88.7
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	88.62
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	88.21
PF13431	34	TPR_17: Tetratricopeptide repeat	88.17
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	87.84
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	87.8
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.69
PLN03218	1060	maturation of RBCL 1; Provisional	87.05
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	86.8
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	86.62
KOG1081	463	consensus Transcription factor NSD1 and related SE	86.38
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	86.14
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.0
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.0
PLN03218	1060	maturation of RBCL 1; Provisional	86.0
PRK14720	906	transcript cleavage factor/unknown domain fusion p	85.96
PRK14720	906	transcript cleavage factor/unknown domain fusion p	85.84
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	85.54
PLN02789	320	farnesyltranstransferase	85.4
COG3947	361	Response regulator containing CheY-like receiver a	85.33
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	85.11
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.07
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	85.04
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	84.9
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	84.77
KOG0508	615	consensus Ankyrin repeat protein [General function	84.42
PRK10941	269	hypothetical protein; Provisional	83.54
PRK11906	458	transcriptional regulator; Provisional	83.38
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	83.34
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.32
KOG3612	588	consensus PHD Zn-finger protein [General function	81.78
KOG3785	557	consensus Uncharacterized conserved protein [Funct	81.42
KOG1586	288	consensus Protein required for fusion of vesicles	81.3
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	81.27
PLN02789	320	farnesyltranstransferase	81.27
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	80.91
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.83
PF09311	181	Rab5-bind: Rabaptin-like protein; InterPro: IPR015	80.48
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	80.31
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	80.15
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	80.09

>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]

Probab=99.94  E-value=1.2e-24  Score=224.04  Aligned_cols=419  Identities=24%  Similarity=0.352  Sum_probs=272.6

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhchhhhc-cCC
Q 012829            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKR-KSV   81 (455)
Q Consensus         3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~~~~~-~~~   81 (455)
                      .+|++|++|+.|.|++.+|..    ..|..|+.. ....|..|....+|+..++...|..|+++|.. ........ ...
T Consensus        32 ~~i~~g~~i~~e~p~~~~p~~----~~~~~c~~~-~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  105 (482)
T KOG2084|consen   32 QAIEAGEVILEEEPLVVGPAS----KSCSRCLGC-SCDHCRRCLEAIECNKCQQRGWALCGKFACSA-DLAKLECEPLKL  105 (482)
T ss_pred             cccCCCceEEecCcceeeecc----cCCcccccc-chhhhhcCCccHhhhhhhccCccccchhhcch-hhccccccchhh
Confidence            479999999999999999986    566666654 46778888888899876655556678888876 32211100 000


Q ss_pred             CHHHHHHHHHHHHHHhhCCCCCCCCCCCchhH--HHHhhcccCCCC--hHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012829           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSL--VEALVAHMSDID--EKQLLLYAQIANLVNLILQWPEISINEIAENF  157 (455)
Q Consensus        82 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~  157 (455)
                      .+....+...   ......      ..+.+..  +..+....+...  ......+....................+..++
T Consensus       106 ~~~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (482)
T KOG2084|consen  106 VGAPEECLAL---SSLHEE------SREAIVLLSLLEECSLSAEKPRLRLDLSYLEHGATEDDQSHLLLVLAADCISKLF  176 (482)
T ss_pred             ccchHHHHHh---hcCCcc------ccchHHHHHHHHHhhhhcccccHhHHHhhHHHHhhHHhhccccchhHHHHHHHHH
Confidence            0000111110   000000      0111111  111111111100  00011111111100000001111223344455


Q ss_pred             hhhhccccccccCCCC----cceeeecccccccCCCCCCCcEEEEeCCEEEEEEecccCCCC-eeEEeecCCCCCHHHHH
Q 012829          158 SKLACNAHTICNSELR----PLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGA-EVLISYIETAGSTMTRQ  232 (455)
Q Consensus       158 ~~~~~N~~~i~~~~~~----~~g~~lyp~~s~~NHSC~PN~~~~~~~~~~~v~a~r~I~~Ge-Ei~isY~~~~~~~~~R~  232 (455)
                      ..+..+++.+.+....    ..|.|+||..+++||||.||+...|+++...+++...+.+++ ||+++|++..+++..||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~  256 (482)
T KOG2084|consen  177 PSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQ  256 (482)
T ss_pred             HHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHH
Confidence            5566666666554433    599999999999999999999999999999999999998887 99999999999999999


Q ss_pred             HHHhccCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccCCCC---CCcccCCCCCcCCHHHHHHHHHHHHH
Q 012829          233 KALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDD---KGFTCQQCGLVRSKEEIKKIASEVNI  309 (455)
Q Consensus       233 ~~L~~~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~---~~~~C~~C~~~~~~~~~~~~~~e~~~  309 (455)
                      ..|+..|.|.|.|+||.++.     +.+.+..+++|.+++|.+.+.+....   ..|.|..|........+.........
T Consensus       257 ~~l~~~~~f~c~c~rc~d~~-----~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  331 (482)
T KOG2084|consen  257 KQLRQSKLFSCQCPRCLDPT-----ELGTFLSSLRCENCTCGGLLGTSFLDKEDLQWPCTECALVRLKAYVVESREELQN  331 (482)
T ss_pred             HHHhhccceeeecCCCCCCC-----ccccchhhhhhcCCCCCCccCCCcccccCCCccccccccchhHHHHHHHHHHHHh
Confidence            99999999999999999863     34567778999988897776654433   58999999998876666554444332


Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----------cccHHHHHHHH--HHhhh
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----------LEDWKEALAYC--QLTIP  377 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----------~g~~~~A~~~~--~~~l~  377 (455)
                      .     .....    ......+.+...+....++.+.........+..++..          ...+..+..++  ...+.
T Consensus       332 ~-----~~~~~----~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (482)
T KOG2084|consen  332 E-----LLDAF----SDLLIEELLLLRQESLELPNDFEVLLLKLHLLFILGSLLGAFLSCSPNAELERLLNLFECRELLK  402 (482)
T ss_pred             h-----ccccC----ChhhhHHHHHHHHHhhhCcchHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHhhhhhHHHH
Confidence            1     00011    1111122233334455666665555444443333322          23455666676  88999


Q ss_pred             hHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhhh
Q 012829          378 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKL  450 (455)
Q Consensus       378 ~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~~  450 (455)
                      +++.+.|..++..+...+.++.....+++...+++.......++....+.+++........+........+..
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (482)
T KOG2084|consen  403 ALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKDCKCIMCLARAEDLDKLSEEEQELEEERSEEGPLA  475 (482)
T ss_pred             HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhhHh
Confidence            9999999999999999999999999999999999999999999999999999999998888888776655543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.52  E-value=2.7e-13  Score=136.34  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=122.0

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+..+|+|++|+.+++.++++..+.+|-.|+.+..++..++.+|+.++++.+|+.++++++.+++.++|+.||.+|.
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~  284 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA  284 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            45666788999999999999999988889989999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      .+.+||.+|...|+++||+.++++|++|++..+|..||.+...+..+..+
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~  334 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI  334 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877666655

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.49  E-value=5.7e-13  Score=134.02  Aligned_cols=136  Identities=18%  Similarity=0.261  Sum_probs=129.2

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      -|..+...+++.+|+.+|++++.+...++|+.|+.++.++.+|+.+|...|+|++|..+++++++|+++++|..||.++.
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            56667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  448 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~  448 (455)
                      .+.++|.++..++++++|+.++++|++|+...+|++|+.+..+...|..+...+.+
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk  382 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK  382 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999998888665544

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=99.38  E-value=1.4e-12  Score=113.25  Aligned_cols=53  Identities=45%  Similarity=0.735  Sum_probs=46.5

Q ss_pred             CCCCcceeeecccccccCCCCCCCcEEEEe----CCEEEEEEecccCCCCeeEEeec
Q 012829          170 SELRPLGTGLYPVISIINHSCLPNAVLVFE----GRLAVVRAVQHVPKGAEVLISYI  222 (455)
Q Consensus       170 ~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~----~~~~~v~a~r~I~~GeEi~isY~  222 (455)
                      ......+.++||.++++||||.|||.+.|+    ++.++++|.|||++||||+|||+
T Consensus       106 ~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG  162 (162)
T PF00856_consen  106 SEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG  162 (162)
T ss_dssp             TTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred             ccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence            334467899999999999999999999998    78999999999999999999996

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.26  E-value=1.8e-11  Score=92.93  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=72.9

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      |+.++.++.+++.+|..+|+|++|++++++++.+ .+.+|+.||.++..++++|.++..+|++++|++++++|++|.+.
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            6788999999999999999999999999999999 88889999999999999999999999999999999999999763

...

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=99.11  E-value=5e-11  Score=97.66  Aligned_cols=46  Identities=33%  Similarity=0.512  Sum_probs=40.4

Q ss_pred             eeeecccccccCCCCCCCcEEEEeC--C--EEEEEEecccCCCCeeEEee
Q 012829          176 GTGLYPVISIINHSCLPNAVLVFEG--R--LAVVRAVQHVPKGAEVLISY  221 (455)
Q Consensus       176 g~~lyp~~s~~NHSC~PN~~~~~~~--~--~~~v~a~r~I~~GeEi~isY  221 (455)
                      +..++|.++++||||.||+.+.+..  +  .+.++|+|+|++|||||++|
T Consensus        67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y  116 (116)
T smart00317       67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY  116 (116)
T ss_pred             CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence            3448899999999999999987653  2  59999999999999999998

Putative methyl transferase, based on outlier plant homologues

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.95  E-value=2e-10  Score=73.13  Aligned_cols=37  Identities=46%  Similarity=1.245  Sum_probs=32.3

Q ss_pred             CccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhh
Q 012829           30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (455)
Q Consensus        30 C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC   67 (455)
                      |.+|++.. +.+|++|+.++|||++||+++|..|+.+|
T Consensus         1 C~~C~~~~-~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKPA-LKRCSRCKSVYYCSEECQRADWPYHKFEC   37 (37)
T ss_dssp             -TTTSSCS-SEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred             CcCCCCCc-CCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence            78888853 44999999999999999999999999887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]

Probab=98.84  E-value=3.1e-09  Score=98.94  Aligned_cols=80  Identities=24%  Similarity=0.383  Sum_probs=63.7

Q ss_pred             hccccccccCCCCcceeeecc-cccccCCCCCCCcEEEEeC-CEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhcc
Q 012829          161 ACNAHTICNSELRPLGTGLYP-VISIINHSCLPNAVLVFEG-RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ  238 (455)
Q Consensus       161 ~~N~~~i~~~~~~~~g~~lyp-~~s~~NHSC~PN~~~~~~~-~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~  238 (455)
                      .-|-|+|+-+.....+ -|+. .++++||.|.|||.++-.| +++.|+++|||++|||||.-|++.+..          .
T Consensus       175 g~nDFSvmyStRk~ca-qLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~fFG----------~  243 (453)
T KOG2589|consen  175 GGNDFSVMYSTRKRCA-QLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGFFG----------E  243 (453)
T ss_pred             cCCceeeeeecccchh-hheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccccC----------C
Confidence            4577887655543333 3444 4789999999999998877 789999999999999999999998765          3


Q ss_pred             CCeeeeccccCCC
Q 012829          239 YLFTCTCPRCIKL  251 (455)
Q Consensus       239 y~F~C~C~rC~~~  251 (455)
                      -.-.|.|.-|...
T Consensus       244 ~N~~CeC~TCER~  256 (453)
T KOG2589|consen  244 NNEECECVTCERR  256 (453)
T ss_pred             CCceeEEeecccc
Confidence            3468999999886

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.77  E-value=1.4e-07  Score=82.88  Aligned_cols=128  Identities=16%  Similarity=0.049  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      +.......+......|++++|+..+++++.+.     +++.....++.+++.+|...|++++|++++++++.+.. .++.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~  107 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQ  107 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHH
Confidence            34445566777788899999999999998752     34445567889999999999999999999999998643 3344


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                      .+..+|..+.++|.++..+|++++|+..+.+|+.+++..+|.+++.+.++..-|
T Consensus       108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~  161 (168)
T CHL00033        108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL  161 (168)
T ss_pred             HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            566677777777777779999999999999999999999999997665554433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.60  E-value=8.1e-07  Score=72.61  Aligned_cols=115  Identities=15%  Similarity=0.089  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..++..+..+...|++++|+..++.++..     +|.++....+...++.++...|++++|+.+++.++..+     |.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            34556677778899999999999888653     45666667778889999999999999999999888643     577


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  437 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~  437 (455)
                      +.....++.+|.++..+|++++|+.++.++++.     .|+++.+.+...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~  117 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQK  117 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHHh
Confidence            766777999999999999999999999999886     578877666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.50  E-value=8.6e-06  Score=69.09  Aligned_cols=121  Identities=12%  Similarity=0.088  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      +.+..+...|-.++..|++++|..+++.+..+        ++.-..-..+|+.++..+|+|++|++.+.+++.     +.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~   99 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IK   99 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cC
Confidence            45666777788889999999999999887653        344455678899999999999999999998877     44


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      +++|..   ++++|..+...|+.++|++.++.|+.+-.     ++|...++.++-+.+...+
T Consensus       100 ~ddp~~---~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~-----~~~~~~~l~~~A~~~L~~l  153 (157)
T PRK15363        100 IDAPQA---PWAAAECYLACDNVCYAIKALKAVVRICG-----EVSEHQILRQRAEKMLQQL  153 (157)
T ss_pred             CCCchH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cChhHHHHHHHHHHHHHHh
Confidence            688754   89999999999999999999999998662     6677777777777666554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.49  E-value=5.2e-06  Score=70.82  Aligned_cols=116  Identities=12%  Similarity=0.097  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..++.++.+        +|.-..++..++.++..+|++++|+..+++++..     .|.+ 
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~-   91 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASH-   91 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC-
Confidence            3455677788899999999999888754        3445677888999999999999999999998873     3444 


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                        +..++++|.++..+|++++|+..+++|++     ..|+++.+..+..........
T Consensus        92 --~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-----~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         92 --PEPVYQTGVCLKMMGEPGLAREAFQTAIK-----MSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             --cHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHH
Confidence              45699999999999999999999999987     568888887777666655544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.45  E-value=1.2e-06  Score=66.14  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  381 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~  381 (455)
                      ..+...+..+...|++++|++.+++++++ ...+++.|+.++.+..+++.++..+|++++|+++++++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            44556677888999999999999999999 67789999999999999999999999999999999999999874

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.45  E-value=2.4e-07  Score=60.71  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      ++..+.+||.++..+|++++|+.++++|+++.+..+|++||.
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            467899999999999999999999999999999999999993

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=4.9e-06  Score=76.93  Aligned_cols=120  Identities=19%  Similarity=0.238  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      ..++.|..++..++..++|++|+..|.++++     +.|.++.+..   +=+.+|..+|.++.|++-|+.++.       
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~-----l~P~nAVyyc---NRAAAy~~Lg~~~~AVkDce~Al~-------  143 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIE-----LDPTNAVYYC---NRAAAYSKLGEYEDAVKDCESALS-------  143 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcchHHH---HHHHHHHHhcchHHHHHHHHHHHh-------
Confidence            4455666677778888999999999999986     5577776644   346789999999999999999988       


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                       ..|...-.|-.||.+|..+|++++|+..|++|++|     .|+.+.+++-+...+....+
T Consensus       144 -iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-----dP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  144 -IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-----DPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             -cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHhcC
Confidence             45777888999999999999999999999999984     57777666666555554443

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=98.38  E-value=1.6e-06  Score=93.90  Aligned_cols=130  Identities=18%  Similarity=0.154  Sum_probs=116.9

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  393 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  393 (455)
                      ......+|.+.++.+ .-+.+.+...+++..|+.+...+..|+..+...|++++|+.+++++..+.+++.|.+||.+...
T Consensus       939 gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen  939 GQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred             hhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence            334456778888887 6677778888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829          394 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       394 l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~  444 (455)
                      +.+|+...+..+....|...+.+|+.++...+|++||.+.-+..+++.+..
T Consensus      1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred             hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence            999999999999999999999999999999999999999888766666633

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.35  E-value=5.5e-06  Score=73.01  Aligned_cols=131  Identities=15%  Similarity=0.112  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      +.......+..+...|++++|+..+++++.+.     +..........+++.++...|++++|+.++++++...... +.
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~  107 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PS  107 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HH
Confidence            34455667777888899999999999987753     2233345678899999999999999999999988853211 11


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      .+..+|..+..+|.....+|++++|+..+.+|+++++...+.++.-+.+++.-+..+
T Consensus       108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  164 (172)
T PRK02603        108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT  164 (172)
T ss_pred             HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence            222334444555555555667889999999999999999998888888877766554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.31  E-value=1.3e-05  Score=78.99  Aligned_cols=113  Identities=16%  Similarity=0.142  Sum_probs=89.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +...|..++..|++++|+..|.+++++     .|.+   ..++.+++.+|..+|++++|+..+++++.+.     +.+  
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~--   69 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIELD-----PSL--   69 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCC--
Confidence            455677778899999999999999874     3333   4567889999999999999999999998852     334  


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                       +..++.+|.++..+|++++|+..+++|++     +.|+++.....+..+....
T Consensus        70 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~-----l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         70 -AKAYLRKGTACMKLEEYQTAKAALEKGAS-----LAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             -HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH
Confidence             45688999999999999999999999997     4577776666555554443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.30  E-value=1.6e-05  Score=74.59  Aligned_cols=108  Identities=14%  Similarity=0.103  Sum_probs=90.7

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829          318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  397 (455)
Q Consensus       318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  397 (455)
                      ...|+|++|+..|+.++..     +|++.....++..|+.+|...|++++|+.++++++..+     |+||.....++++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~-----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~kl  223 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKK-----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKV  223 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHH-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHH
Confidence            4468999999999888763     56777778889999999999999999999988877754     5899999999999


Q ss_pred             HHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          398 GKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       398 a~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      |.++..+|++++|...|++.++.+     |+++........|.
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL~  261 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRLN  261 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHHh
Confidence            999999999999999999887633     66666666666553

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.24  E-value=4.4e-05  Score=71.02  Aligned_cols=129  Identities=17%  Similarity=0.167  Sum_probs=99.3

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....|......|++++|+..++.++.     .+|..+....+...|+.+|...+++++|+.++++.+..+     |.||
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~  103 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP  103 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCC
Confidence            345667777889999999999999876     456677777888899999999999999999999988755     5999


Q ss_pred             HHHHHHHHHHHHhhhcC---------------CcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829          389 LLGLQYYTCGKLEWFLG---------------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  449 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g---------------~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~  449 (455)
                      .+...++.+|..+..++               +...+.+.+..--.+++..  |++++..+...+|..++..+...
T Consensus       104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866        104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHH
Confidence            99999999998865554               2222333333333444444  78999999999999988776544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=98.23  E-value=2.2e-05  Score=71.29  Aligned_cols=137  Identities=16%  Similarity=0.262  Sum_probs=100.2

Q ss_pred             CCcccCCCCCcCCHHHH--------HHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHH
Q 012829          284 KGFTCQQCGLVRSKEEI--------KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKL  355 (455)
Q Consensus       284 ~~~~C~~C~~~~~~~~~--------~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L  355 (455)
                      ..|.|+.||........        +.+.+.+...+. ...+....++++|++.|..++-- ..+.++.+...+.+...+
T Consensus        47 ~V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~~~~-~~~~~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~Lrl  124 (214)
T PF09986_consen   47 EVWVCPHCGYAAFEEDFEKLSPEQKEKIKENISSRWK-PRDFSGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRL  124 (214)
T ss_pred             eEEECCCCCCcccccccccCCHHHHHHHHHHHHhhcc-cCCCCCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHH
Confidence            45889999987654433        233333332222 11333344788999988877643 455667777888999999


Q ss_pred             HHHHHhcccHHHHHHHHHHhhhhHHhhcCC-CCh----HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          356 IKILMELEDWKEALAYCQLTIPVYQRVYPQ-FHP----LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       356 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-~hp----~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      |.+|..+|+-+....++++++..|++.|-. ..|    .-...++-+|.+....|++++|..++.+.+..-.
T Consensus       125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            999999999988999999999999988752 232    3357888999999999999999999999876433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.22  E-value=2e-06  Score=56.21  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      ++.++.+|+.+|..+|+|++|+.++++++.++++++|++||.
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            356789999999999999999999999999999999999994

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.21  E-value=4.6e-05  Score=63.92  Aligned_cols=112  Identities=21%  Similarity=0.294  Sum_probs=86.1

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +...+..+...|++++|+..++++..+     +|.   -...+..++..+..+|++++|..++++++.+        +|.
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~   83 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAY-----DPY---NSRYWLGLAACCQMLKEYEEAIDAYALAAAL--------DPD   83 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCC
Confidence            455666777889999999998887654     233   3466778999999999999999999988774        233


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      ....++.+|.++...|++++|++.++++++.     .|+.+....+...+..+
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~  131 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEI-----CGENPEYSELKERAEAM  131 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ccccchHHHHHHHHHHH
Confidence            4556789999999999999999999999984     46666655555554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.18  E-value=1e-05  Score=81.21  Aligned_cols=95  Identities=22%  Similarity=0.211  Sum_probs=79.8

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      .+.|..+...|+..+|+.-|.+++.+.        +...+++++|+.+|+.+|.+++|..+++++++++        |..
T Consensus       324 ~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~  387 (966)
T KOG4626|consen  324 NNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEF  387 (966)
T ss_pred             hHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhh
Confidence            455677788899999999999998763        3446778899999999999999999999988854        777


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      +...++||.+|-.+|++++|+..|++|++|-
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            8888999999999999999999999988763

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.14  E-value=0.00014  Score=65.92  Aligned_cols=131  Identities=20%  Similarity=0.207  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...|...+..|++.+|+..++.+...     .|.++...++...++.++...|+|.+|...+++.+..+     |.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            456778888899999999999999988753     57788888999999999999999999999988877644     47


Q ss_pred             ChHHHHHHHHHHHHhhhcCC--------cHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829          387 HPLLGLQYYTCGKLEWFLGD--------TENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  449 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~--------~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~  449 (455)
                      ||.+...++.+|..+..+.+        ...+.+.+.....++...  |+++++.+...+|.+++..+...
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~  143 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEH  143 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHH
Confidence            89999999999998776532        122222222222333333  89999999999999998776543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.03  E-value=7.5e-05  Score=69.20  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..+++++.     ..|.++....++..++.++...|+|++|+..+++++...     |++
T Consensus        34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~  103 (235)
T TIGR03302        34 EELYEEAKEALDSGDYTEAIKYFEALES-----RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNH  103 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCC
Confidence            3445667777889999999999888865     346677777788999999999999999999999988643     467


Q ss_pred             hHHHHHHHHHHHHhhhc--------CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFL--------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~--------g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                      |.+...++.+|.++...        |++++|++.++++++.     -|+++...+.+..+
T Consensus       104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~  158 (235)
T TIGR03302       104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRM  158 (235)
T ss_pred             CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHH
Confidence            77667788888888765        7889999999998764     46666655554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.99  E-value=5.5e-05  Score=76.12  Aligned_cols=114  Identities=16%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      .+.++.+.+..+..+|++++|..+|+++++.        .+..+.+..+|+.+|-.+|++++|+..++.+|.|-      
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------  418 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------  418 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------
Confidence            4566677777888888999999998888765        56677888889999999999999999888888753      


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                        |..+..+.++|..|-.+|+.++|...+.+|+.|        .|-..|....|..+.
T Consensus       419 --P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~  466 (966)
T KOG4626|consen  419 --PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIY  466 (966)
T ss_pred             --chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHh
Confidence              777888888888888888888888888888765        244444444444443

>COG2940 Proteins containing SET domain [General function prediction only]

Probab=97.99  E-value=3.4e-06  Score=86.53  Aligned_cols=71  Identities=24%  Similarity=0.355  Sum_probs=58.3

Q ss_pred             ccccccCCCCCCCcEEEEeCC----EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeeccccCCC
Q 012829          181 PVISIINHSCLPNAVLVFEGR----LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIKL  251 (455)
Q Consensus       181 p~~s~~NHSC~PN~~~~~~~~----~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C~rC~~~  251 (455)
                      ....++||||.||+.....+.    .+.++|+|||.+||||+..|.........+...+...+...|.|.+|...
T Consensus       404 ~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (480)
T COG2940         404 DVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT  478 (480)
T ss_pred             cccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence            346799999999999886543    68899999999999999999877654433567778899999999999873

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.96  E-value=0.00017  Score=60.23  Aligned_cols=115  Identities=19%  Similarity=0.241  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...|...+..|+|.+|++.++.+..     -.|..+..-++...|+.+|...++|++|+..+++-+.     +-|.|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~-----ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~h   80 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDT-----RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTH   80 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCC
Confidence            3456677777889999999998887754     3566667778889999999999999999998888776     33699


Q ss_pred             hHHHHHHHHHHHHhhhcCC---------------cHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGD---------------TENAIKSMTEAVEILRITHGTNSPFMKELIL  437 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~---------------~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~  437 (455)
                      |.+...++..|..++.+..               ..+|...+++-++   ..  |+|++..+...
T Consensus        81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~---~y--P~S~ya~dA~~  140 (142)
T PF13512_consen   81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR---RY--PNSEYAADARK  140 (142)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH---HC--cCChhHHHHHh
Confidence            9999999999999988765               3444444444433   33  67776666544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.90  E-value=0.0002  Score=61.11  Aligned_cols=94  Identities=20%  Similarity=0.135  Sum_probs=64.7

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      +..|...+..|++++|...++.++...     ++......++..|+.++...|++++|+..+..         .+..+..
T Consensus        52 l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~---------~~~~~~~  117 (145)
T PF09976_consen   52 LQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQ---------IPDEAFK  117 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---------ccCcchH
Confidence            345666777888888888888776531     22222234456688888888888888887643         1233445


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAV  418 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~  418 (455)
                      +.....+|.++...|++++|+..|++|+
T Consensus       118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  118 ALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            5566778888888888888888888874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.90  E-value=7.5e-05  Score=57.16  Aligned_cols=83  Identities=19%  Similarity=0.203  Sum_probs=60.5

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  399 (455)
Q Consensus       320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  399 (455)
                      +|++++|+..++++++....     ++ -......++.+|..+|+|++|+.++++ +..-     +.+   ....+.+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~---~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSN---PDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCH---HHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCC---HHHHHHHHH
Confidence            57899999999999876422     22 233455689999999999999999888 2211     223   333445699


Q ss_pred             HhhhcCCcHHHHHHHHHH
Q 012829          400 LEWFLGDTENAIKSMTEA  417 (455)
Q Consensus       400 l~~~~g~~~eA~~~l~~A  417 (455)
                      .+..+|++++|++.|++|
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999986

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]

Probab=97.88  E-value=9.5e-06  Score=87.67  Aligned_cols=43  Identities=30%  Similarity=0.532  Sum_probs=35.8

Q ss_pred             cccccCCCCCCCcEE---EEeC-CEEEEEEecccCCCCeeEEeecCC
Q 012829          182 VISIINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYIET  224 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~---~~~~-~~~~v~a~r~I~~GeEi~isY~~~  224 (455)
                      .+.++||||.|||..   ..+| .+++|.|.|+|.+|||||..|-..
T Consensus       939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~  985 (1005)
T KOG1080|consen  939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFP  985 (1005)
T ss_pred             hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccc
Confidence            477999999999965   3345 469999999999999999999544

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=9.6e-06  Score=82.34  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=33.6

Q ss_pred             ccccCCCCCCCcEE---EEeC-CEEEEEEecccCCCCeeEEeecCCC
Q 012829          183 ISIINHSCLPNAVL---VFEG-RLAVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       183 ~s~~NHSC~PN~~~---~~~~-~~~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      +-++||||+|||.+   +..| -++=+.|.|+|++|||||..|-...
T Consensus       194 aRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~r  240 (729)
T KOG4442|consen  194 ARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDR  240 (729)
T ss_pred             HHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccccc
Confidence            45889999999975   2333 2456889999999999999995543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.87  E-value=7.9e-05  Score=54.52  Aligned_cols=64  Identities=28%  Similarity=0.431  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~~A~~i  420 (455)
                      ......++..+...|+|++|+.++.+++..        +|.-+..++++|.+++.+| ++++|+..+++|+++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            345677899999999999999999999985        2444557999999999999 799999999999875

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.86  E-value=0.00037  Score=57.04  Aligned_cols=101  Identities=20%  Similarity=0.190  Sum_probs=77.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      ..++.|......|+.++|+.+|+++++.     +.......++.-.++..+..+|++++|+.+.+..+.    -+|.+. 
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~----~~p~~~-   72 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE----EFPDDE-   72 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc-
Confidence            3466788888999999999999999762     344455667888899999999999999999988765    233311 


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ..+.....+|..+.++|+.+||+..+-.++.
T Consensus        73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 LNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1233345578899999999999999888775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.84  E-value=0.00015  Score=66.79  Aligned_cols=100  Identities=19%  Similarity=0.162  Sum_probs=88.1

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +.+.|..++..|+|.+|...|...+..     .|+...+.++++.|+.++..+|++++|...+..++.-|     |.||.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            566777788899999999999888764     47888899999999999999999999999988877744     47888


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      .--.|++||.++..+|+.++|...|++..+
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            888899999999999999999999998876

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.83  E-value=0.00021  Score=63.93  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=68.6

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..++.+|++..|...++++++.        +|....++..++.+|...|+.+.|-+.+++++.        -+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--------l~p  100 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--------LAP  100 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--------cCC
Confidence            3445677788889999998888888764        455566677778888888888888888888776        345


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      .-|..++|-|--+..+|++++|...+.+|+.
T Consensus       101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             CccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            5566666666666666666666666666654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.78  E-value=8.3e-06  Score=74.30  Aligned_cols=44  Identities=36%  Similarity=0.890  Sum_probs=40.9

Q ss_pred             CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhh
Q 012829           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL   70 (455)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~   70 (455)
                      ..+|..|+.+.+..+|+.|+.+.||+++||+-+|-.|+--|+.+
T Consensus       319 ~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L  362 (396)
T KOG1710|consen  319 CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL  362 (396)
T ss_pred             cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            67888899888899999999999999999999999999999876

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.77  E-value=0.00013  Score=52.64  Aligned_cols=59  Identities=22%  Similarity=0.351  Sum_probs=51.1

Q ss_pred             HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .++..+...|+|++|+..+++++.        .+|.-...++.+|.++..+|++++|+.++++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467889999999999999998877        33667788999999999999999999999999864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.70  E-value=0.00091  Score=60.72  Aligned_cols=92  Identities=13%  Similarity=0.082  Sum_probs=46.9

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..+..+...|++++|+..+++++..     .|.   ...+...++.++...|++++|.+++++++...     +.++   
T Consensus        36 ~la~~~~~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~---   99 (234)
T TIGR02521        36 QLALGYLEQGDLEVAKENLDKALEH-----DPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLN-----PNNG---   99 (234)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-----Ccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCH---
Confidence            3344455556666666666555432     122   22344455556666666666666665555421     1222   


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ..++++|.++...|++++|++.++++++
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~  127 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE  127 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            2344555555555555555555555554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.69  E-value=0.0013  Score=62.73  Aligned_cols=127  Identities=15%  Similarity=0.108  Sum_probs=93.3

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  393 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  393 (455)
                      |..+...+++++|...|.++.....+ . .+....+..+...+.+|... ++++|+.++++++.+|..  .......+..
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~-~-~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~--~G~~~~aA~~  116 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEK-L-GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE--AGRFSQAAKC  116 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH--CT-HHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh--cCcHHHHHHH
Confidence            34456778999999999999887665 2 23345567777777777666 999999999999999863  2344456889


Q ss_pred             HHHHHHHhhhc-CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          394 YYTCGKLEWFL-GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       394 l~~La~l~~~~-g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                      +.++|.++... |++++|+++|++|+++++..-  ..-...+...++.++..++.
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~  169 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLG  169 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhC
Confidence            99999999999 999999999999999999873  33345667777777655543

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.65  E-value=0.00058  Score=65.74  Aligned_cols=102  Identities=13%  Similarity=0.120  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ...+..+..+...|++++|+..+++++++        +|....++.+++.++...|++++|++.+++++++.     |++
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----P~~  131 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-----PTY  131 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC
Confidence            34556677778889999999999888764        23345678889999999999999999999988732     344


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  430 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp  430 (455)
                         ...++++|.++...|++++|+..+++|+++     .|++|
T Consensus       132 ---~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~  166 (296)
T PRK11189        132 ---NYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDP  166 (296)
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence               456899999999999999999999999874     45555

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.64  E-value=0.0046  Score=52.63  Aligned_cols=102  Identities=17%  Similarity=0.157  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      ++....+..+......++...+...++.+..     -+|+.+.-..+...++..+...|++++|...++.++..     .
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~   78 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAK-----DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----A   78 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----C
Confidence            3444555556666677888887776666654     24556666777888999999999999999999987772     2


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  416 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~  416 (455)
                      ++.....+..+.||.++..+|++++|++.|..
T Consensus        79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   79 PDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            45566678899999999999999999999855

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.60  E-value=0.0019  Score=58.61  Aligned_cols=94  Identities=12%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+...|++++|+..+++++..      +.++........++.++...|++++|..++.+++...     +.++   .
T Consensus       105 ~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~---~  170 (234)
T TIGR02521       105 YGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-----PQRP---E  170 (234)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCh---H
Confidence            344556778999999998888753      1233344556778999999999999999999987742     3333   3


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .+..+|.++...|++++|..++++++++
T Consensus       171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       171 SLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5778999999999999999999999886

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.60  E-value=0.00059  Score=51.74  Aligned_cols=93  Identities=20%  Similarity=0.277  Sum_probs=72.2

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..+..+...|++++|+..++.+++..     |.+.   .+...++.++...+++++|.+++..++...     +.++   
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---   68 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-----PDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD-----PDNA---   68 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-----CccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccch---
Confidence            34555667889999999988886542     2222   567788999999999999999998877742     2333   


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..++.+|.++...|++++|..++.+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            56788999999999999999999998764

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=97.57  E-value=0.00061  Score=74.55  Aligned_cols=119  Identities=18%  Similarity=0.086  Sum_probs=106.9

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829          322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  401 (455)
Q Consensus       322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~  401 (455)
                      ....|...+-+++.+..-.++|.||.++.+..++..++...++++.|+.+.+.++...++++|+.+..++..+..+|.+.
T Consensus      1030 ~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~ 1109 (1236)
T KOG1839|consen 1030 NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLF 1109 (1236)
T ss_pred             CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHH
Confidence            44455666667777767789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          402 WFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       402 ~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      .-.+++..|..+.+.+..|+...+|++|+-+++..+-+.
T Consensus      1110 ~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1110 ESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred             hhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence            999999999999999999999999999999988665444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.56  E-value=0.00025  Score=52.44  Aligned_cols=72  Identities=24%  Similarity=0.332  Sum_probs=59.1

Q ss_pred             HHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          355 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       355 L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                      |..+|...++|++|++++++++..        +|.-...++..|.++..+|++++|...++++++     .+|+++....
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~-----~~p~~~~~~~   67 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALE-----LSPDDPDARA   67 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH-----HCCCcHHHHH
Confidence            356889999999999999998885        344446688899999999999999999999994     5678877766


Q ss_pred             HHHHH
Q 012829          435 LILKL  439 (455)
Q Consensus       435 ~~~~l  439 (455)
                      +..+|
T Consensus        68 ~~a~l   72 (73)
T PF13371_consen   68 LRAML   72 (73)
T ss_pred             HHHhc
Confidence            66654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.55  E-value=0.0027  Score=54.04  Aligned_cols=126  Identities=20%  Similarity=0.224  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-c-------------ccHHHHHHHHHHHHHhcccHHHHHHH
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-S-------------VNLMQTREKLIKILMELEDWKEALAY  371 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~-~-------------~~~~~~~~~L~~~~~~~g~~~~A~~~  371 (455)
                      .++.+...+......|+...++..+++++.+...-+-+. .             ...+.+...++..+...|++++|+.+
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            344444555555566778888888888888765533322 1             12233455667777889999999999


Q ss_pred             HHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC-ChhHHHHHHHH
Q 012829          372 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILKL  439 (455)
Q Consensus       372 ~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~-hp~~~~~~~~l  439 (455)
                      +++++...        |.--..+..+-.++...|+..+|...|++..+.+...+|.+ +|.+.++...|
T Consensus        85 ~~~~l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i  145 (146)
T PF03704_consen   85 LQRALALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREI  145 (146)
T ss_dssp             HHHHHHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred             HHHHHhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence            99988732        33334456667789999999999999999999999999976 66666665543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.52  E-value=0.00041  Score=68.54  Aligned_cols=72  Identities=15%  Similarity=0.087  Sum_probs=65.0

Q ss_pred             ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          344 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       344 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .+|.....+.+++.+|...|+|++|+..+++++++     .|+++.....++++|..|..+|++++|+..|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46777888999999999999999999999999985     3677766678999999999999999999999999997

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.52  E-value=0.0027  Score=57.22  Aligned_cols=95  Identities=7%  Similarity=0.022  Sum_probs=73.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH-Hhccc--HHHHHHHHHHhhhhHHhhcCCCC
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL-MELED--WKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~-~~~g~--~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ...+..+...|++++|+..|++++++     .|++   ...+..++.++ ...|+  .++|.+++++++..     .+.+
T Consensus        77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----dP~~  143 (198)
T PRK10370         77 ALLGEYYLWRNDYDNALLAYRQALQL-----RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKALAL-----DANE  143 (198)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----CCCC
Confidence            33456677889999999999988764     3444   44556677764 66677  48999998888872     2444


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      +   ..++.||..+...|++++|+.+++++++..
T Consensus       144 ~---~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        144 V---TALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             h---hHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4   568999999999999999999999998854

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.48  E-value=0.0031  Score=58.29  Aligned_cols=122  Identities=18%  Similarity=0.096  Sum_probs=88.2

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc--------ccHHHHHHHHHHhhhhHHh
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYCQLTIPVYQR  381 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~--------g~~~~A~~~~~~~l~~~~~  381 (455)
                      ....+..+...|++++|+..++++++.     .|+++....++..++.++...        |++++|+..+++++..+  
T Consensus        73 ~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--  145 (235)
T TIGR03302        73 QLDLAYAYYKSGDYAEAIAAADRFIRL-----HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--  145 (235)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--
Confidence            345567778889999999999998763     466777666777788888765        88999999988887642  


Q ss_pred             hcCCCChHHH--------------HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          382 VYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       382 ~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                        | .++...              ...+.+|.+++..|++.+|+..++++++..     |++|...+..-.+..+...+
T Consensus       146 --p-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~l  216 (235)
T TIGR03302       146 --P-NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKL  216 (235)
T ss_pred             --C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHc
Confidence              2 333221              123478899999999999999999998853     44566666665555554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.0048  Score=59.88  Aligned_cols=109  Identities=14%  Similarity=0.206  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhh--cccCCcc-----ccHHHHHHHHHHHHHhcccHHHHHHHHHHhh
Q 012829          304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQK--KLYHPFS-----VNLMQTREKLIKILMELEDWKEALAYCQLTI  376 (455)
Q Consensus       304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~--~~l~~~~-----~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l  376 (455)
                      ..++....+.+..++..|+|..|...|++++....  ..+.+.-     .....++.||+.+|..+++|.+|+..|.++|
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33444555667778889999999999999877532  2222221     1233467899999999999999999999988


Q ss_pred             hhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          377 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       377 ~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .     ..+.|+   -.||.=|+++..+|+++.|+..+++|+++
T Consensus       285 e-----~~~~N~---KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  285 E-----LDPNNV---KALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             h-----cCCCch---hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            7     445554   66899999999999999999999999973

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.45  E-value=0.0019  Score=68.90  Aligned_cols=93  Identities=11%  Similarity=0.082  Sum_probs=54.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++++     .|.+   ..++..++.++...|++++|+.++++++.+.        |..
T Consensus       369 ~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~  432 (615)
T TIGR00990       369 IKRASMNLELGDPDKAEEDFDKALKL-----NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDF  432 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccC
Confidence            34455555666777777776666543     2333   2345566666677777777777766666531        222


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ...+.++|.++..+|++++|+..+++|+.
T Consensus       433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~  461 (615)
T TIGR00990       433 IFSHIQLGVTQYKEGSIASSMATFRRCKK  461 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33455566666666666666666666654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.44  E-value=0.0063  Score=55.74  Aligned_cols=130  Identities=22%  Similarity=0.306  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+.+++...+..|++.+|...++.+..     -||..+..=++.-.++.++...+++++|+.+..+-+.    .|| .|
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~-----~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~----lyP-~~  104 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDS-----RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR----LYP-TH  104 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH----hCC-CC
Confidence            4556667777789999999999888753     5677777778888899999999999999988766555    444 89


Q ss_pred             hHHHHHHHHHHHHhhhc-----CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829          388 PLLGLQYYTCGKLEWFL-----GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  449 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~-----g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~  449 (455)
                      |.+...++..|..+...     .+...+...+....+++.+.  |+++++.+...++..+...+-..
T Consensus       105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~  169 (254)
T COG4105         105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGH  169 (254)
T ss_pred             CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHH
Confidence            99999999888887654     33445666666666666676  99999999999998887766543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.44  E-value=0.0021  Score=71.25  Aligned_cols=111  Identities=12%  Similarity=0.044  Sum_probs=75.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++++     .|+++   .++.+++.++...|++++|++++++++..     .|++|  
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~--  677 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDP--  677 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH--
Confidence            33445555667777777777766653     33333   56677888888888888888888887763     23444  


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                       ..++++|.++..+|++++|+..+++|+++-     |+...+.+....+...
T Consensus       678 -~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-----P~~a~i~~~~g~~~~~  723 (987)
T PRK09782        678 -ALIRQLAYVNQRLDDMAATQHYARLVIDDI-----DNQALITPLTPEQNQQ  723 (987)
T ss_pred             -HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCchhhhhhhHHHHH
Confidence             458888888999999999999988888754     5555555544444444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.42  E-value=0.00099  Score=58.28  Aligned_cols=69  Identities=14%  Similarity=-0.038  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      ....+..++..+...|++++|+.++++++.+.     ++++..+..++++|.++...|++++|+..+++|+.+.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~  102 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN  102 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34556778888999999999999999998863     4566677899999999999999999999999999873

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.40  E-value=0.0015  Score=52.99  Aligned_cols=86  Identities=19%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  429 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  429 (455)
                      ++...++..+...|++++|..++.+++...     +.++.....++.+|.++...|++++|+.++++++..     .|++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            356678889999999999999999887632     466666778899999999999999999999999864     3676


Q ss_pred             hhHHHHHHHHHHHHHH
Q 012829          430 PFMKELILKLEEAQAE  445 (455)
Q Consensus       430 p~~~~~~~~l~~~~~~  445 (455)
                      +.+..+...+..+..+
T Consensus        73 ~~~~~~~~~~~~~~~~   88 (119)
T TIGR02795        73 PKAPDALLKLGMSLQE   88 (119)
T ss_pred             CcccHHHHHHHHHHHH
Confidence            6555555555554433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.38  E-value=0.0023  Score=68.28  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=77.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++.+        ++....++..++.++...|++++|+.++++++..     .+.+|  
T Consensus       335 ~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~--  399 (615)
T TIGR00990       335 NLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP--  399 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH--
Confidence            33455556789999999999988765        3445567778899999999999999999998774     34554  


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                       ..++.+|.++..+|++++|+..+++|+++
T Consensus       400 -~~~~~lg~~~~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       400 -DIYYHRAQLHFIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence             45889999999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=97.36  E-value=0.0053  Score=52.54  Aligned_cols=116  Identities=10%  Similarity=0.155  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      ..+..+...|-.++.+|++++|..+++-+..     +.+.++..   ...|+.++..+++|++|+..+..+..+-     
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-----  101 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLL-----  101 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence            3566677778888999999999999876643     55556544   4678999999999999999988766533     


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH-HHHHHHHH
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE-LILKLEEA  442 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~-~~~~l~~~  442 (455)
                      .+.|..   .+..|.-+..+|+.++|+..++-|++      .++|+.+++ ....|+.+
T Consensus       102 ~~dp~p---~f~agqC~l~l~~~~~A~~~f~~a~~------~~~~~~l~~~A~~~L~~l  151 (165)
T PRK15331        102 KNDYRP---VFFTGQCQLLMRKAAKARQCFELVNE------RTEDESLRAKALVYLEAL  151 (165)
T ss_pred             cCCCCc---cchHHHHHHHhCCHHHHHHHHHHHHh------CcchHHHHHHHHHHHHHH
Confidence            344433   66779999999999999999999988      366666655 34444433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.35  E-value=0.0037  Score=67.01  Aligned_cols=119  Identities=13%  Similarity=0.049  Sum_probs=85.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++++     .|.++   .++..++.++...|++++|+..+++++..        +|
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P  349 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLP---YVRAMYARALRQVGQYTAASDEFVQLARE--------KG  349 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc
Confidence            3445567777889999999998888764     34443   45667899999999999999998877763        23


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      .....+..+|.++...|++++|+..|++|+++.-..+.   +.+.+....+.+....+
T Consensus       350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~~~  404 (656)
T PRK15174        350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQISAV  404 (656)
T ss_pred             cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHHhc
Confidence            33334555688889999999999999999987666542   33345666666665544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.34  E-value=0.0031  Score=67.33  Aligned_cols=92  Identities=11%  Similarity=-0.016  Sum_probs=47.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...|......|.+++|+.+++.++++        .|+...++.+++.++...+++++|+..+++++..        .|.-
T Consensus        90 ~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~  153 (694)
T PRK15179         90 VLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSS  153 (694)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCC
Confidence            33455556677777777777766653        2333444555555555555555555555544431        1222


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAV  418 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~  418 (455)
                      +..++.+|+++..+|++++|+..|++++
T Consensus       154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~  181 (694)
T PRK15179        154 AREILLEAKSWDEIGQSEQADACFERLS  181 (694)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            3334444444444444444444444444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.34  E-value=0.004  Score=66.49  Aligned_cols=114  Identities=10%  Similarity=-0.023  Sum_probs=86.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...+++++|+..+++++..        .|.-...+..++.++..+|++++|.+++++++.        .||
T Consensus       122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p  185 (694)
T PRK15179        122 AFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHP  185 (694)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCC
Confidence            3445566777888999999988888753        455566778899999999999999999888776        445


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      .-...+..+|.++...|+.++|...|++|++..    |+....+.+.+.+|...
T Consensus       186 ~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~  235 (694)
T PRK15179        186 EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI----GDGARKLTRRLVDLNAD  235 (694)
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----CcchHHHHHHHHHHHHH
Confidence            556778899999999999999999999999853    33334444444444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.33  E-value=0.0046  Score=61.74  Aligned_cols=99  Identities=13%  Similarity=0.042  Sum_probs=65.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-  387 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h-  387 (455)
                      ..+..+......|++++|+..++++++.     .|.   ...++..++.++...|++++|+.+++.++.     .|... 
T Consensus        37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~  103 (389)
T PRK11788         37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV-----DPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLS-----RPDLTR  103 (389)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc-----Ccc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-----CCCCCH
Confidence            3334455556677888888887777653     222   345566777788888888888887776654     12222 


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ......+..||.++...|++++|+..+.++++.
T Consensus       104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  136 (389)
T PRK11788        104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDE  136 (389)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence            233456777788888888888888888877653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.32  E-value=0.0024  Score=56.15  Aligned_cols=71  Identities=13%  Similarity=0.043  Sum_probs=60.8

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ++.....+..++..+...|++++|+.++++++...     ++++..+..++++|.++..+|++++|+.++++|+++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44556677889999999999999999999988853     344556778999999999999999999999999986

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.22  E-value=0.0042  Score=59.34  Aligned_cols=104  Identities=17%  Similarity=0.162  Sum_probs=78.1

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-ccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      |......+++++|+..++++..+...  .-.....+.+...++.+|... |++++|+++++++++.|+.--  ..-....
T Consensus        81 Aa~~~k~~~~~~Ai~~~~~A~~~y~~--~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~  156 (282)
T PF14938_consen   81 AANCYKKGDPDEAIECYEKAIEIYRE--AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAE  156 (282)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHH--CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHH
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHH
Confidence            44444555888999999998887542  112334567889999999998 999999999999999998544  2234566


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      .+.++|.++..+|+|++|.+.+++.....
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            77899999999999999999999987754

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.21  E-value=0.0077  Score=60.10  Aligned_cols=61  Identities=20%  Similarity=0.152  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ....++..+...|++++|..++++++..        .|.....++.+|.++...|++++|+.+++++++
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  242 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEE  242 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3344555555555555555555555442        111223344555555555666666555555554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.21  E-value=0.00069  Score=49.26  Aligned_cols=66  Identities=12%  Similarity=0.166  Sum_probs=50.0

Q ss_pred             HhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHH
Q 012829          360 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  438 (455)
Q Consensus       360 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~  438 (455)
                      +..|+|++|++++++++...        |.-...++.+|.++...|++++|+..+.+++.     ..|++|.+..++.+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLK-----QDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG-----GGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCcCHHHHHHHHhc
Confidence            56799999999999988742        33345577899999999999999999888776     23556766666554

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.13  E-value=0.0017  Score=46.74  Aligned_cols=59  Identities=22%  Similarity=0.250  Sum_probs=48.7

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY  379 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  379 (455)
                      .|..+...|++++|+..++.+++.        +|.-..++..++.++..+|++++|+.++++++...
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            466778899999999999888753        35567788899999999999999999999988643

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]

Probab=97.04  E-value=0.00038  Score=68.78  Aligned_cols=44  Identities=25%  Similarity=0.389  Sum_probs=36.0

Q ss_pred             ccccCCCCCCCcEEEE--eCC------EEEEEEecccCCCCeeEEeecCCCC
Q 012829          183 ISIINHSCLPNAVLVF--EGR------LAVVRAVQHVPKGAEVLISYIETAG  226 (455)
Q Consensus       183 ~s~~NHSC~PN~~~~~--~~~------~~~v~a~r~I~~GeEi~isY~~~~~  226 (455)
                      +-++||||.||+.+..  .+.      .+.+.|+++|++|+|+|..|+....
T Consensus       273 ~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~  324 (364)
T KOG1082|consen  273 ARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYK  324 (364)
T ss_pred             cccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccc
Confidence            4588999999998853  332      3678899999999999999987654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.02  E-value=0.0083  Score=67.04  Aligned_cols=110  Identities=10%  Similarity=0.091  Sum_probs=89.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+......|++++|...+++++..... .++.+. ...+...++.++...|++++|..++++++...+...++.++..+.
T Consensus       497 lg~~~~~~G~~~~A~~~~~~al~~~~~-~g~~~~-~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  574 (903)
T PRK04841        497 LGEVHHCKGELARALAMMQQTEQMARQ-HDVYHY-ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF  574 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhh-hcchHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            344556789999999999888876543 333332 344667899999999999999999999999988877777777777


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      .+..+|.+++.+|++++|...+.+|+.+.+..
T Consensus       575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  606 (903)
T PRK04841        575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNY  606 (903)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence            77889999999999999999999999987743

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.02  E-value=0.0051  Score=44.75  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhh
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPV  378 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~  378 (455)
                      ......+..+...|++++|+..+++++.+        ++.-..++.+++.+|..+| ++++|+.++++++.+
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            34556677888999999999999999875        3334557889999999999 899999999998874

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.00  E-value=0.014  Score=51.37  Aligned_cols=107  Identities=18%  Similarity=0.184  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829          302 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  380 (455)
Q Consensus       302 ~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  380 (455)
                      +...++..+..++..++..|+|.+|.+-|..++++.-    +... ...-++.+=+.+.+.++.|+.|+.-|-++|++. 
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp----~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-  164 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCP----STSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-  164 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCc----cccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-
Confidence            4455666777778888999999999999999988642    2221 122234566778899999999999999999843 


Q ss_pred             hhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          381 RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       381 ~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                             |..--++..=|.+|....++++|+.-|++.+++
T Consensus       165 -------pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  165 -------PTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             -------chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence                   444455556688999999999999998887653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.98  E-value=0.0099  Score=63.78  Aligned_cols=94  Identities=11%  Similarity=0.100  Sum_probs=72.8

Q ss_pred             HHHHHHhhhcCChHH----HHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          311 SKKTLALTSCGNHQE----VVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~----a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+..+...|++++    |+..+++++++     .|   ....++..++.++...|++++|+.++++++..     .|+
T Consensus       250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P---~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~  316 (656)
T PRK15174        250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NS---DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPD  316 (656)
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC
Confidence            344566677788875    67778777764     23   34567788999999999999999999998873     344


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ++   ..+..+|.++...|++++|+..++++++.
T Consensus       317 ~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~  347 (656)
T PRK15174        317 LP---YVRAMYARALRQVGQYTAASDEFVQLARE  347 (656)
T ss_pred             CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            54   44677899999999999999999988874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.97  E-value=0.0072  Score=66.64  Aligned_cols=103  Identities=18%  Similarity=0.034  Sum_probs=74.2

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh-----------
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV-----------  378 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~-----------  378 (455)
                      +...|..+..+|++++|+..+++++.+        +|....++..++.+|..+|+|++|+.++++++..           
T Consensus        25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~   96 (899)
T TIGR02917        25 LIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLL   96 (899)
T ss_pred             HHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHH
Confidence            344566667788888888888777753        3334456777888888888888888888776542           


Q ss_pred             ----------------HHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          379 ----------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       379 ----------------~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                                      +....+...|..+..+..+|..+...|++++|+..+++|+++
T Consensus        97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  154 (899)
T TIGR02917        97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI  154 (899)
T ss_pred             HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                            122333455666777888888888889999999888888764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.96  E-value=0.0065  Score=59.82  Aligned_cols=94  Identities=14%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LG  391 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~  391 (455)
                      .+..+...|++++|+..+++++++.     |.+   ......++.++...|++++|..++++.+.....     +|. ..
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~-----p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~~~~  186 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELN-----PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSMLRG  186 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----CcchhH
Confidence            3445667899999999999998752     333   345677899999999999999999998875542     233 34


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ..++.+|.++..+|++++|+..++++..
T Consensus       187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         187 HNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            5577899999999999999999999854

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=96.91  E-value=0.0015  Score=44.48  Aligned_cols=46  Identities=22%  Similarity=0.451  Sum_probs=38.1

Q ss_pred             cCccccCcC---CCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhch
Q 012829           29 RCDGCFASS---NLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLD   74 (455)
Q Consensus        29 ~C~~C~~~~---~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~   74 (455)
                      .|..|....   ..+.||.|+++.|||++=+..|..+|+.-|..++.+.
T Consensus         1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRqvN   49 (55)
T PF13824_consen    1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQVN   49 (55)
T ss_pred             CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHHhc
Confidence            367777743   3689999999999999988888789999999998754

>PRK12370 invasion protein regulator; Provisional

Probab=96.87  E-value=0.014  Score=61.36  Aligned_cols=91  Identities=15%  Similarity=0.001  Sum_probs=58.9

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+...|++++|+..+++++++     .|++   ..++..++.++...|++++|+.++++++..-     |.+|..  
T Consensus       344 lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~~~~--  408 (553)
T PRK12370        344 LGLINTIHSEYIVGSLLFKQANLL-----SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTRAAA--  408 (553)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCChhh--
Confidence            344455677888888888887764     2333   3456677888888888888888888877632     334322  


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                       .+.++.++...|++++|+..++++++
T Consensus       409 -~~~~~~~~~~~g~~eeA~~~~~~~l~  434 (553)
T PRK12370        409 -GITKLWITYYHTGIDDAIRLGDELRS  434 (553)
T ss_pred             -HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence             22233345557777777777777654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.85  E-value=0.015  Score=52.32  Aligned_cols=95  Identities=13%  Similarity=0.031  Sum_probs=75.2

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .|..+...|..+.|.+.|++++.+        ++.-.++++|-+.-+..+|++++|..++++++.      -|.-+..+.
T Consensus        75 ~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~  140 (250)
T COG3063          75 RAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSD  140 (250)
T ss_pred             HHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcch
Confidence            355566778888899999988864        334455677888888889999999999888765      245566677


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      .+-|+|.....+|+.+.|+.+|++|+++.
T Consensus       141 t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         141 TLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             hhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            88999999999999999999999998743

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.84  E-value=0.015  Score=64.65  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=74.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829          319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  398 (455)
Q Consensus       319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  398 (455)
                      ..|++++|+..+++++++.     |   . ...+.+++.++...|++++|+..+++++..     .|+++   ..++++|
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~-----P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~---~a~~nLG  650 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIA-----P---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNS---NYQAALG  650 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhC-----C---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Confidence            3488888888888887542     2   2 456788899999999999999999988874     34555   5688999


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          399 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       399 ~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                      .++...|++++|+..+++|+++     .|+++....
T Consensus       651 ~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~  681 (987)
T PRK09782        651 YALWDSGDIAQSREMLERAHKG-----LPDDPALIR  681 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence            9999999999999999999884     577775544

>KOG1337 consensus N-methyltransferase [General function prediction only]

Probab=96.84  E-value=0.0014  Score=67.28  Aligned_cols=88  Identities=22%  Similarity=0.197  Sum_probs=62.1

Q ss_pred             CHHHHHHHHhhhhccccccccC-----CCCcceeeecccccccCCCCCCCcEEEE-eCCEEEEEEecccCCCCeeEEeec
Q 012829          149 SINEIAENFSKLACNAHTICNS-----ELRPLGTGLYPVISIINHSCLPNAVLVF-EGRLAVVRAVQHVPKGAEVLISYI  222 (455)
Q Consensus       149 ~~~~i~~~~~~~~~N~~~i~~~-----~~~~~g~~lyp~~s~~NHSC~PN~~~~~-~~~~~~v~a~r~I~~GeEi~isY~  222 (455)
                      +...+.-.++.+.+.+|.+...     .....-.++.|..-+.||++.+.....+ .+..+.+++.++|.+||||+|+|+
T Consensus       198 ~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG  277 (472)
T KOG1337|consen  198 TFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYG  277 (472)
T ss_pred             chHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecC
Confidence            3344455566666666654322     1223346799999999999999333332 344789999999999999999999


Q ss_pred             CCCCCHHHHHHHHhccCCee
Q 012829          223 ETAGSTMTRQKALKEQYLFT  242 (455)
Q Consensus       223 ~~~~~~~~R~~~L~~~y~F~  242 (455)
                      +...      ..|...|||.
T Consensus       278 ~~~N------~eLL~~YGFv  291 (472)
T KOG1337|consen  278 PKSN------AELLLHYGFV  291 (472)
T ss_pred             CCch------HHHHHhcCCC
Confidence            9544      5566799997

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.015  Score=58.63  Aligned_cols=112  Identities=16%  Similarity=0.228  Sum_probs=83.7

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      +.+-..+..+.|.+|...++.++.....+.. ..+....+..+|+.+|..++.+++|+.+++++|...     +.+   +
T Consensus       419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-----~k~---~  489 (611)
T KOG1173|consen  419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-----PKD---A  489 (611)
T ss_pred             hhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-----CCc---h
Confidence            3344445567888999999888854444333 333566778899999999999999999999998733     333   3


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  437 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~  437 (455)
                      ..+-.+|-+|..+|.++.|++++.+|+.+     .|+...+.+++.
T Consensus       490 ~~~asig~iy~llgnld~Aid~fhKaL~l-----~p~n~~~~~lL~  530 (611)
T KOG1173|consen  490 STHASIGYIYHLLGNLDKAIDHFHKALAL-----KPDNIFISELLK  530 (611)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHhc-----CCccHHHHHHHH
Confidence            44667788999999999999999999974     466666666554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.83  E-value=0.045  Score=51.48  Aligned_cols=86  Identities=15%  Similarity=0.144  Sum_probs=66.8

Q ss_pred             HHHHHHHH-HHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829          351 TREKLIKI-LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  429 (455)
Q Consensus       351 ~~~~L~~~-~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  429 (455)
                      ..+..+.. +...|+|++|+..++..+..|     |+++.....++.||.+++..|++++|...+++++..+     |+|
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s  213 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKS  213 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC
Confidence            33444444 366799999999888877754     4677777889999999999999999999999988744     788


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 012829          430 PFMKELILKLEEAQAEA  446 (455)
Q Consensus       430 p~~~~~~~~l~~~~~~~  446 (455)
                      |...+.+-++..+..++
T Consensus       214 ~~~~dAl~klg~~~~~~  230 (263)
T PRK10803        214 PKAADAMFKVGVIMQDK  230 (263)
T ss_pred             cchhHHHHHHHHHHHHc
Confidence            88888887776665443

>PRK12370 invasion protein regulator; Provisional

Probab=96.78  E-value=0.0055  Score=64.40  Aligned_cols=84  Identities=12%  Similarity=0.040  Sum_probs=67.1

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH
Q 012829          321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  400 (455)
Q Consensus       321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l  400 (455)
                      +++++|+..+++++++     .|++   ..++..++.++...|++++|+.++++++..     .|+++.   .++.+|.+
T Consensus       318 ~~~~~A~~~~~~Al~l-----dP~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~---a~~~lg~~  381 (553)
T PRK12370        318 NAMIKAKEHAIKATEL-----DHNN---PQALGLLGLINTIHSEYIVGSLLFKQANLL-----SPISAD---IKYYYGWN  381 (553)
T ss_pred             hHHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH
Confidence            3467788777777654     3444   455667888999999999999999999874     455554   57889999


Q ss_pred             hhhcCCcHHHHHHHHHHHHh
Q 012829          401 EWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       401 ~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +..+|++++|+..+++|+++
T Consensus       382 l~~~G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKL  401 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhc
Confidence            99999999999999999875

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.78  E-value=0.0021  Score=64.68  Aligned_cols=96  Identities=19%  Similarity=0.200  Sum_probs=79.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      +...|+|+.|+.-|+.++.     .-|++.   .+.+.|+.++.+..+.++|+.-|++++.+.        |...-+.|+
T Consensus       440 y~ls~efdraiDcf~~AL~-----v~Pnd~---~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyN  503 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQ-----VKPNDY---LLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYN  503 (579)
T ss_pred             HhcchHHHHHHHHHHHHHh-----cCCchH---HHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehh
Confidence            4456788999988888865     335554   347789999999999999999999999855        444456899


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829          397 CGKLEWFLGDTENAIKSMTEAVEILRITHGTN  428 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~  428 (455)
                      ||..++++|-|+||.++|-.|+.+.++..+..
T Consensus       504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~  535 (579)
T KOG1125|consen  504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHN  535 (579)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhhcccccc
Confidence            99999999999999999999999999976644

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.77  E-value=0.032  Score=52.61  Aligned_cols=129  Identities=14%  Similarity=0.177  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+.+.+..++..|=++.|+.+|..+...        ....-.++..|..+|-.-.+|++|++..++...+-..   ++..
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~  177 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRV  177 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchh
Confidence            3444455666666666666665544321        0112245556666666666676666665554332111   2333


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHH---------------------------HHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKS---------------------------MTEAVEILRITHGTNSPFMKELILKLEE  441 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~---------------------------l~~A~~i~~~~~G~~hp~~~~~~~~l~~  441 (455)
                      .+|.-+=.||+.+....+.+.|+..                           +++|++.++...--++.++.++..+|.+
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~  257 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE  257 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            3444444444443333333332222                           2223344444445788899999999999


Q ss_pred             HHHHHhh
Q 012829          442 AQAEASY  448 (455)
Q Consensus       442 ~~~~~~~  448 (455)
                      +..++..
T Consensus       258 ~Y~~lg~  264 (389)
T COG2956         258 CYAQLGK  264 (389)
T ss_pred             HHHHhCC
Confidence            9887654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.70  E-value=0.025  Score=46.30  Aligned_cols=64  Identities=16%  Similarity=0.013  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      +..+++.++-..|+.++|+.++++++.     .|...+...-.+..+|..+..+|++++|+..|++++.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~-----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA-----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456788899999999999999999987     3555566666788999999999999999999999875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.64  E-value=0.0095  Score=68.30  Aligned_cols=99  Identities=12%  Similarity=0.095  Sum_probs=65.8

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC--------
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ--------  385 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~--------  385 (455)
                      +..+...|++++|+..+++++++     .|.+   ..++..|+.+|...|++++|+.++++++.......+.        
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~-----~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRA-----NPKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence            44455677788888777777664     2222   4556677777777788877777777776532211100        


Q ss_pred             --------------------------------CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          386 --------------------------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       386 --------------------------------~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                                                      .+|.-...++.||.++..+|++++|+..+++|+++
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM  414 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                                            01222345678899999999999999999999875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.63  E-value=0.018  Score=52.68  Aligned_cols=91  Identities=21%  Similarity=0.175  Sum_probs=72.6

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+......|++.+|+..++++..+     .|++   .+.+..++.+|...|++++|..-+.++++..     +..|.+  
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----~~~p~~--  170 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARL-----APTD---WEAWNLLGAALDQLGRFDEARRAYRQALELA-----PNEPSI--  170 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhcc-----CCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhc-----cCCchh--
Confidence            344456789999999988888653     3333   4557778999999999999999999988843     355644  


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                       +.|||.++.-.|+++.|++++.+|..
T Consensus       171 -~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         171 -ANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             -hhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence             88999999999999999999998864

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.62  E-value=0.036  Score=49.86  Aligned_cols=95  Identities=11%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH
Q 012829          321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  400 (455)
Q Consensus       321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l  400 (455)
                      ++.++++..++..++.        +|.-...+..|+.+|...|++++|+..+++++..     .|+++   ..+..+|.+
T Consensus        53 ~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~---~~~~~lA~a  116 (198)
T PRK10370         53 QTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENA---ELYAALATV  116 (198)
T ss_pred             hhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHH
Confidence            3455666555555543        3444567888999999999999999999998873     34554   447788886


Q ss_pred             h-hhcCC--cHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829          401 E-WFLGD--TENAIKSMTEAVEILRITHGTNSPFMKELI  436 (455)
Q Consensus       401 ~-~~~g~--~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~  436 (455)
                      + ...|+  +++|...+++|++     ..|+++.....+
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~-----~dP~~~~al~~L  150 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALA-----LDANEVTALMLL  150 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHH-----hCCCChhHHHHH
Confidence            4 67777  5999999999987     356665544433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.55  E-value=0.018  Score=54.76  Aligned_cols=105  Identities=17%  Similarity=0.227  Sum_probs=71.1

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...|......|+.++|+..+++++++     .|.++.   ++..++..+...|+++++.+........    . +.+|.+
T Consensus       150 ~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~---~~~~l~~~li~~~~~~~~~~~l~~~~~~----~-~~~~~~  216 (280)
T PF13429_consen  150 LALAEIYEQLGDPDKALRDYRKALEL-----DPDDPD---ARNALAWLLIDMGDYDEAREALKRLLKA----A-PDDPDL  216 (280)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HH---HHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHH----C-cCHHHH
Confidence            34455667789999999999999874     344544   3556788888899998876655544332    2 344443


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  436 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~  436 (455)
                         +..+|.++..+|++++|..++++++.     ..|++|.+...+
T Consensus       217 ---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~~~~  254 (280)
T PF13429_consen  217 ---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWLLAY  254 (280)
T ss_dssp             ---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHHHHH
T ss_pred             ---HHHHHHHhcccccccccccccccccc-----cccccccccccc
Confidence               45678899999999999999999875     457777554433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.46  E-value=0.015  Score=42.09  Aligned_cols=54  Identities=11%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829          318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY  379 (455)
Q Consensus       318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  379 (455)
                      +..|++++|+..+++++..        +|.-..++..++.+|...|++++|..++.+++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4578999999999999764        34445567789999999999999999988877633

...

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]

Probab=96.40  E-value=0.0017  Score=67.25  Aligned_cols=43  Identities=28%  Similarity=0.351  Sum_probs=32.8

Q ss_pred             ccccCCCCCCCcEE--EEeCC---E---EEEEEecccCCCCeeEEeecCCC
Q 012829          183 ISIINHSCLPNAVL--VFEGR---L---AVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       183 ~s~~NHSC~PN~~~--~~~~~---~---~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      +.++||||+||..+  +|.+.   .   +.+.|.+-|++|.|||..|.-..
T Consensus      1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~ 1240 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQ 1240 (1262)
T ss_pred             hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccc
Confidence            56899999999987  34432   1   34667889999999999996543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.39  E-value=0.017  Score=49.12  Aligned_cols=67  Identities=12%  Similarity=-0.019  Sum_probs=54.8

Q ss_pred             HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829          354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  433 (455)
Q Consensus       354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~  433 (455)
                      .++.++...|++++|+.++++++..     .   |.-...++++|.++..+|++++|+..+++|+.+     .|+++...
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~-----~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~   95 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMA-----Q---PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----DASHPEPV   95 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc-----C---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHH
Confidence            5688889999999999999998763     2   334466899999999999999999999999974     56665443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.29  E-value=0.034  Score=60.92  Aligned_cols=94  Identities=15%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +...|..+...|++++|+..+++++++     .|.++   .+...++.++...|++++|+.++++++..     .|.++.
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~---~a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P~~~~  118 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND---DYQRGLILTLADAGQYDEALVKAKQLVSG-----APDKAN  118 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH
Confidence            344566677889999999999888764     23443   34457888899999999999998888764     234443


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                          ++.+|.++...|++++|+..+++|+++
T Consensus       119 ----~~~la~~l~~~g~~~~Al~~l~~al~~  145 (765)
T PRK10049        119 ----LLALAYVYKRAGRHWDELRAMTQALPR  145 (765)
T ss_pred             ----HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                777899999999999999999998873

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.24  E-value=0.063  Score=60.04  Aligned_cols=111  Identities=15%  Similarity=0.012  Sum_probs=85.2

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+......|++++|...+++++.+....-++.++....+...++.++...|++++|..++++++.+.+...+   +..
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---~~~  611 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP---QQQ  611 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc---hHH
Confidence            34456667889999999999998887655433333333444556788889999999999999999998774432   234


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      ...+..+|.++...|++++|...+.++..+....
T Consensus       612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~  645 (903)
T PRK04841        612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNG  645 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            5667789999999999999999999998876553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.20  E-value=0.061  Score=59.30  Aligned_cols=28  Identities=14%  Similarity=0.315  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIP  377 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~  377 (455)
                      .++..++.+|...|++++|..++++++.
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~  798 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVK  798 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4445566666666666666666666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]

Probab=96.20  E-value=0.0036  Score=66.71  Aligned_cols=40  Identities=35%  Similarity=0.601  Sum_probs=32.9

Q ss_pred             ccccCCCCCCCcEEE---EeCC-EEEEEEecccCCCCeeEEeec
Q 012829          183 ISIINHSCLPNAVLV---FEGR-LAVVRAVQHVPKGAEVLISYI  222 (455)
Q Consensus       183 ~s~~NHSC~PN~~~~---~~~~-~~~v~a~r~I~~GeEi~isY~  222 (455)
                      +-++||||.|||...   .+|. ++.|.|+|||.+||||+..|-
T Consensus      1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN 1294 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYN 1294 (1306)
T ss_pred             ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecc
Confidence            457899999999653   3453 688999999999999999983

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.19  E-value=0.048  Score=51.49  Aligned_cols=96  Identities=11%  Similarity=0.041  Sum_probs=74.1

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      ..+.|.......+++.|+.++++++.-        ++.-.++--.++.+++..|+|+.|++.++.       +...++-.
T Consensus       183 yCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~-------v~eQn~~y  247 (389)
T COG2956         183 YCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALER-------VLEQNPEY  247 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHH-------HHHhChHH
Confidence            345566666777888999888888763        333344445578889999999999876554       55567777


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ++..+..|...|..+|+.++++..|.++++.
T Consensus       248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            8888999999999999999999999998873

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.19  E-value=0.031  Score=64.14  Aligned_cols=91  Identities=15%  Similarity=0.042  Sum_probs=46.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+...|++++|+..|++++++     .|.+   ..++..++.+|...|++++|++++++++..     .++++   .
T Consensus       609 La~~~~~~g~~~~A~~~y~~al~~-----~P~~---~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~p~~~---~  672 (1157)
T PRK11447        609 LADWAQQRGDYAAARAAYQRVLTR-----EPGN---ADARLGLIEVDIAQGDLAAARAQLAKLPAT-----ANDSL---N  672 (1157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCCh---H
Confidence            344455666777777777666653     2333   234555666666666666666665544331     11222   2


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      .+..+|.++..+|++++|+.++++++.
T Consensus       673 ~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        673 TQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            233344444444444444444444443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.18  E-value=0.039  Score=60.25  Aligned_cols=92  Identities=8%  Similarity=0.015  Sum_probs=42.8

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..+.....+|++++|+..++++++.     .|.++..+.   .++.+++..|++++|+.++++++      .|.  |.-.
T Consensus        39 ~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~---dll~l~~~~G~~~~A~~~~eka~------~p~--n~~~  102 (822)
T PRK14574         39 DSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD---DWLQIAGWAGRDQEVIDVYERYQ------SSM--NISS  102 (822)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH---HHHHHHHHcCCcHHHHHHHHHhc------cCC--CCCH
Confidence            3444455667777777776666543     222211111   34444445555555555555444      111  1111


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ..+..+|.++..+|++++|++.|+++++
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~  130 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLK  130 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            2233334455555555555555555543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.16  E-value=0.016  Score=61.91  Aligned_cols=92  Identities=11%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  393 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  393 (455)
                      +..+...|++.+|+.++.++.+-..        ....+.-|||.+|..+|+|..|++++...+   +++|+.+.+.+   
T Consensus       653 giVLA~kg~~~~A~dIFsqVrEa~~--------~~~dv~lNlah~~~e~~qy~~AIqmYe~~l---kkf~~~~~~~v---  718 (1018)
T KOG2002|consen  653 GIVLAEKGRFSEARDIFSQVREATS--------DFEDVWLNLAHCYVEQGQYRLAIQMYENCL---KKFYKKNRSEV---  718 (1018)
T ss_pred             hhhhhhccCchHHHHHHHHHHHHHh--------hCCceeeeHHHHHHHHHHHHHHHHHHHHHH---HHhcccCCHHH---
Confidence            4456677899999999988876432        223456689999999999999999999855   46777777766   


Q ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          394 YYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       394 l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      +.-||.+++..|++.+|...+.+|+.
T Consensus       719 l~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  719 LHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            77789999999999999999888775

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.15  E-value=0.083  Score=50.77  Aligned_cols=95  Identities=15%  Similarity=0.014  Sum_probs=69.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+.+++++     .|+   ...++.+++.++...|++++|++.+++++..     .|.+|
T Consensus       100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~---~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~  166 (296)
T PRK11189        100 AYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPT---YNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDP  166 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH
Confidence            4455667778899999999999999875     233   3456788999999999999999999998863     35666


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..+.-+    .+....+++++|...+.++...
T Consensus       167 ~~~~~~----~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        167 YRALWL----YLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHH----HHHHccCCHHHHHHHHHHHHhh
Confidence            432211    2334567899999999776643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.14  E-value=0.0042  Score=63.45  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=50.8

Q ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      .-.++++.|+.+|.++++++.|.-+++++++|        .|.-...+-.+|+++..+|+.++|+.++++|..
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            33456778888888888888888888888774        355556677788888888999999988888874

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.14  E-value=0.0097  Score=37.26  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=26.1

Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      .+.+||.++..+|++++|++++++|+.+-..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4789999999999999999999999866543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.13  E-value=0.031  Score=54.80  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=84.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      .++....+..|++++|.+.|+.++.        ++....+++.+++-.+-.+|+.++|++.+-++..++.     ++   
T Consensus       494 ~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~-----nn---  557 (840)
T KOG2003|consen  494 TNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-----NN---  557 (840)
T ss_pred             hcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-----hh---
Confidence            3444455677899999999998875        3556778899999999999999999999888777664     33   


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      +-.++.+|.+|..+.+...|+++|.+|..+     =|+.|.   ++.+|.++.
T Consensus       558 ~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~---ilskl~dly  602 (840)
T KOG2003|consen  558 AEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPA---ILSKLADLY  602 (840)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHH---HHHHHHHHh
Confidence            455888999999999999999999998764     377774   445555553

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.13  E-value=0.13  Score=50.14  Aligned_cols=127  Identities=16%  Similarity=0.069  Sum_probs=96.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829          319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  398 (455)
Q Consensus       319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  398 (455)
                      -.|+|+.|++.|+..+.+... ++. ...-+++.+.|+..|.-..++++|+.|..+-+.|...+-.  -.--+-..|.||
T Consensus       247 flg~fe~A~ehYK~tl~LAie-lg~-r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLg  322 (639)
T KOG1130|consen  247 FLGNFELAIEHYKLTLNLAIE-LGN-RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLG  322 (639)
T ss_pred             hhcccHhHHHHHHHHHHHHHH-hcc-hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHH
Confidence            347899999999988776543 232 2345678889999999999999999999988887765432  223356789999


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhhhc
Q 012829          399 KLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS  451 (455)
Q Consensus       399 ~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~~~  451 (455)
                      ..+..+|..++|+.+.++++++-.....+...+|  ....|.+++.++....|
T Consensus       323 na~~alg~h~kAl~fae~hl~~s~ev~D~sgelT--ar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  323 NAFNALGEHRKALYFAELHLRSSLEVNDTSGELT--ARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh--hhhhhHHHHHHhCCCcc
Confidence            9999999999999999999999888877765544  34455666666655544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.11  E-value=0.051  Score=40.64  Aligned_cols=62  Identities=26%  Similarity=0.385  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      ...++..+...|++++|+.++++++...    | .++   ..++.+|.++...|++++|++.+++++++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   64 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD----P-DNA---DAYYNLAAAYYKLGKYEEALEDYEKALELD   64 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC----C-ccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4568888999999999999999887642    2 333   567889999999999999999999998853

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]

Probab=96.10  E-value=0.0031  Score=57.64  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=37.8

Q ss_pred             ccccCCCCCCCcEEE---EeCC-EEEEEEecccCCCCeeEEeecCCCCC
Q 012829          183 ISIINHSCLPNAVLV---FEGR-LAVVRAVQHVPKGAEVLISYIETAGS  227 (455)
Q Consensus       183 ~s~~NHSC~PN~~~~---~~~~-~~~v~a~r~I~~GeEi~isY~~~~~~  227 (455)
                      .-++|||=.+|+...   ++|. .+++.|.|||.+||||+..|+|-...
T Consensus       334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSke  382 (392)
T KOG1085|consen  334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKE  382 (392)
T ss_pred             hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchh
Confidence            568999999999753   4454 69999999999999999999997643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.028  Score=56.64  Aligned_cols=119  Identities=14%  Similarity=0.155  Sum_probs=87.5

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  395 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  395 (455)
                      ++...|.+++|+..|..+-++    +.-.|.+.+-    |+.-|+..++++.|..++.+++.+.     |+.|.   .+.
T Consensus       355 sfa~e~EhdQAmaaY~tAarl----~~G~hlP~LY----lgmey~~t~n~kLAe~Ff~~A~ai~-----P~Dpl---v~~  418 (611)
T KOG1173|consen  355 SFAGEGEHDQAMAAYFTAARL----MPGCHLPSLY----LGMEYMRTNNLKLAEKFFKQALAIA-----PSDPL---VLH  418 (611)
T ss_pred             HhhhcchHHHHHHHHHHHHHh----ccCCcchHHH----HHHHHHHhccHHHHHHHHHHHHhcC-----CCcch---hhh
Confidence            344556778888777666544    4444544332    5566888899999999999988865     46664   489


Q ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhhhc
Q 012829          396 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYKLS  451 (455)
Q Consensus       396 ~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~~~  451 (455)
                      .+|.+.+..+.+.+|.++++.|+ +...+.+++.+.+.-+...|..+...+.....
T Consensus       419 Elgvvay~~~~y~~A~~~f~~~l-~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  419 ELGVVAYTYEEYPEALKYFQKAL-EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             hhhheeehHhhhHHHHHHHHHHH-HHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            99999999999999999999999 44555677777777777777777666655443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.07  E-value=0.012  Score=36.03  Aligned_cols=31  Identities=32%  Similarity=0.493  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      +..++++|.++..+|++++|+..+++|+++-
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            3568999999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.03  E-value=0.022  Score=54.18  Aligned_cols=94  Identities=21%  Similarity=0.290  Sum_probs=51.5

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+...|+.+++.++++......     |.++.+   ...++.+|..+|+.++|+.++++++.     ..|.+|.+  
T Consensus       186 l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~--  250 (280)
T PF13429_consen  186 LAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLW--  250 (280)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHH--
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHhcccccccccccccccccc-----cccccccc--
Confidence            3445667788888777666554432     445554   45688999999999999999999775     33566655  


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                       +..+|.++...|+.++|..+.++|+.-++
T Consensus       251 -~~~~a~~l~~~g~~~~A~~~~~~~~~~l~  279 (280)
T PF13429_consen  251 -LLAYADALEQAGRKDEALRLRRQALRLLR  279 (280)
T ss_dssp             -HHHHHHHHT--------------------
T ss_pred             -ccccccccccccccccccccccccccccC
Confidence             67889999999999999999999987654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.11  Score=52.34  Aligned_cols=111  Identities=19%  Similarity=0.169  Sum_probs=86.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..++..|+|..|+..|-+++..        +|.-..++-|.+-+|..+|.+..|+.-+...++.        +|..
T Consensus       362 r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~  425 (539)
T KOG0548|consen  362 REKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNF  425 (539)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchH
Confidence            34566778889999999999887653        3555566778899999999999999999998886        7877


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      .-.|..-|.++..+.+|++|.+.+++|++.=        |.-.++...+.++...
T Consensus       426 ~kgy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  426 IKAYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHH
Confidence            7778888999999999999999999998732        4445555555555443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=0.15  Score=51.98  Aligned_cols=127  Identities=18%  Similarity=0.151  Sum_probs=85.6

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh------------
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV------------  378 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~------------  378 (455)
                      +++|-..+..++.++|+..+.        .+.+....+.+   -=++++..+|+|++|++.|+.++..            
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~--------~~~~~~~~ll~---L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n  151 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK--------GLDRLDDKLLE---LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN  151 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh--------cccccchHHHH---HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            356666666677777766544        22223333333   3467788899999999988876221            


Q ss_pred             -----------HHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          379 -----------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       379 -----------~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                                 .....|..--..=-.+||.|.++...|+|.+|++.|++|++|-+.++-.+..---++...|.-++-++.
T Consensus       152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla  231 (652)
T KOG2376|consen  152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA  231 (652)
T ss_pred             HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence                       111222211113356889999999999999999999999999999887776555667777777776665


Q ss_pred             h
Q 012829          448 Y  448 (455)
Q Consensus       448 ~  448 (455)
                      +
T Consensus       232 y  232 (652)
T KOG2376|consen  232 Y  232 (652)
T ss_pred             H
Confidence            4

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.93  E-value=0.013  Score=55.14  Aligned_cols=94  Identities=15%  Similarity=0.206  Sum_probs=60.0

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .|......+.+++|.++|+.+++     +|+.|+.   +.-.++..|...++-+.|+.|+++++.     .|..+|.+  
T Consensus       296 ~ARi~eam~~~~~a~~lYk~vlk-----~~~~nvE---aiAcia~~yfY~~~PE~AlryYRRiLq-----mG~~speL--  360 (478)
T KOG1129|consen  296 QARIHEAMEQQEDALQLYKLVLK-----LHPINVE---AIACIAVGYFYDNNPEMALRYYRRILQ-----MGAQSPEL--  360 (478)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHh-----cCCccce---eeeeeeeccccCCChHHHHHHHHHHHH-----hcCCChHH--
Confidence            34444445566777777777765     3444543   333456666777777778888777665     56666655  


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                       +.|+|.-.+..++++-++..+++|+...+
T Consensus       361 -f~NigLCC~yaqQ~D~~L~sf~RAlstat  389 (478)
T KOG1129|consen  361 -FCNIGLCCLYAQQIDLVLPSFQRALSTAT  389 (478)
T ss_pred             -HhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence             56677777777777777777777665544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.91  E-value=0.046  Score=45.45  Aligned_cols=64  Identities=19%  Similarity=0.181  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ......++..+...|++++|..++++++..     .+.+   ...++.+|.++..+|++++|++.+++++++
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355677888999999999999998887663     2333   466789999999999999999999999885

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.89  E-value=0.016  Score=35.31  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      -.++.+|.+++.+|++++|+..+++|+++-
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            468899999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.88  E-value=0.13  Score=56.43  Aligned_cols=108  Identities=7%  Similarity=-0.128  Sum_probs=85.0

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..+..+...|++++|+..+++++..     .|.+   ..++..++.++...|++++|++.+++++...     |+++.  
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al~~-----~P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-----Pd~~~--  428 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELAYN-----APGN---QGLRIDYASVLQARGWPRAAENELKKAEVLE-----PRNIN--  428 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCChH--
Confidence            3455666789999999998888654     3555   4577889999999999999999999888743     45554  


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                       .++.+|.++..+|++++|+..++++++     .-|+.|.+..+.+.++
T Consensus       429 -l~~~~a~~al~~~~~~~A~~~~~~ll~-----~~Pd~~~~~~~~~~~~  471 (765)
T PRK10049        429 -LEVEQAWTALDLQEWRQMDVLTDDVVA-----REPQDPGVQRLARARD  471 (765)
T ss_pred             -HHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHH
Confidence             577888899999999999999999887     3478887777666654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.077  Score=48.03  Aligned_cols=99  Identities=15%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +.+....++...+|..|+.-|.+++.+        +|..+.-..+=+..++...+|+.+..-|++++.+        .|.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N   76 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN   76 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence            334444555566788999888777654        3333333445566788899999999999999884        477


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      .+...+.||........+++|++.|++|++.++..
T Consensus        77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            78889999999999999999999999999877654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.16  Score=49.68  Aligned_cols=99  Identities=12%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      ..+.+...+.+|++..|.+.|..++.+     .|+|. ..+.++.+.+.+...+|+..+|+.-|..++.+        .+
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~i-----dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~  318 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNI-----DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DS  318 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcC-----CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CH
Confidence            334566678899999999999999864     45565 45577889999999999999999999998874        47


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      .....|..-|+.+..++++++|+..+++|++.-
T Consensus       319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            777888888999999999999999999999843

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.81  E-value=0.53  Score=37.93  Aligned_cols=114  Identities=16%  Similarity=0.143  Sum_probs=76.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc--c--cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--V--NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~--~--~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+......|-|++|..-++++....+.+=...-  +  .=+-++..|+.++..+|+|++++.-..++|.-+.+ -|.-|-
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR-RGEL~q   93 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR-RGELHQ   93 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-H--TTS
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh-cccccc
Confidence            345555678899999999999887654422221  1  12234567889999999999999998888875554 355565


Q ss_pred             HHHHHH----HHHHHHhhhcCCcHHHHHHHHHHHHhchhccCC
Q 012829          389 LLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  427 (455)
Q Consensus       389 ~~~~~l----~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~  427 (455)
                      .-|..+    ++-|..+...|+.+||.+.++.|-+++..--|.
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE  136 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE  136 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence            554433    445777888999999999999999988776664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.80  E-value=0.094  Score=40.89  Aligned_cols=65  Identities=18%  Similarity=0.220  Sum_probs=53.9

Q ss_pred             HhcccHHHHHHHHHHhhhhHHhhcCCCC-hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          360 MELEDWKEALAYCQLTIPVYQRVYPQFH-PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       360 ~~~g~~~~A~~~~~~~l~~~~~~~g~~h-p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      ...|||.+|++.+.+..+....-....+ -.....+.++|.++...|++++|+..+++|+++.+..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4579999999999998887665555442 2356778899999999999999999999999998887

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.75  E-value=0.044  Score=46.72  Aligned_cols=74  Identities=18%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829          346 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  425 (455)
Q Consensus       346 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~  425 (455)
                      ...++..+.++..+...|++++|..+++-+..        ..|....-+++||.++..+|++++|+..|.+|..+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--------~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--------YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            56677888899999999999999998876554        33555677999999999999999999999999873     


Q ss_pred             CCCChhH
Q 012829          426 GTNSPFM  432 (455)
Q Consensus       426 G~~hp~~  432 (455)
                      .|++|..
T Consensus        99 ~~ddp~~  105 (157)
T PRK15363         99 KIDAPQA  105 (157)
T ss_pred             CCCCchH
Confidence            4666644

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.74  E-value=0.13  Score=38.17  Aligned_cols=72  Identities=15%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      ....++...++.+.+.++|+..++++++....     .+....+...|+++|.+.|+|.+++++..+=+++.+..-.
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled   78 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITD-----REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED   78 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            34455566677888889999999999876432     4467788889999999999999999998877777665443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=0.061  Score=53.48  Aligned_cols=102  Identities=22%  Similarity=0.225  Sum_probs=72.4

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  393 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  393 (455)
                      |..+.++++|++|++.|..+..+.. ..|-.++..+-..+....+..=.+++.+|+.+++++++        -.|.--..
T Consensus       469 AeiLtDqqqFd~A~k~YD~ai~LE~-~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--------~Dpkce~A  539 (606)
T KOG0547|consen  469 AEILTDQQQFDKAVKQYDKAIELEP-REHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--------LDPKCEQA  539 (606)
T ss_pred             HHHHhhHHhHHHHHHHHHHHHhhcc-ccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--------cCchHHHH
Confidence            5567788999999999999887632 22222332222222111112223788999999999887        34666788


Q ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          394 YYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       394 l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      +-.||++...+|+.++|+++++++....+..
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            8999999999999999999999998765543

>TIGR00540 hemY_coli hemY protein

Probab=95.55  E-value=0.092  Score=52.98  Aligned_cols=87  Identities=10%  Similarity=-0.026  Sum_probs=59.8

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHH--hhhhHHhhcCCCChHHHHHHHHHH
Q 012829          321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL--TIPVYQRVYPQFHPLLGLQYYTCG  398 (455)
Q Consensus       321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~--~l~~~~~~~g~~hp~~~~~l~~La  398 (455)
                      ++...++...++.++     .+|.++. ...++.++.++...|+|++|.+++++  ++..     .|++ ..   +..+|
T Consensus       313 ~~~~~~~~~~e~~lk-----~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~-~~---~~~La  377 (409)
T TIGR00540       313 EDNEKLEKLIEKQAK-----NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDA-ND---LAMAA  377 (409)
T ss_pred             CChHHHHHHHHHHHH-----hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCH-HH---HHHHH
Confidence            344444444444433     3566664 45677789999999999999999884  4442     1222 22   33779


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHhch
Q 012829          399 KLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       399 ~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      .+++.+|+.++|..++++++..+-
T Consensus       378 ~ll~~~g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       378 DAFDQAGDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999877543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.51  E-value=0.56  Score=42.29  Aligned_cols=127  Identities=17%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHhhh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP  377 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-----------g~~~~A~~~~~~~l~  377 (455)
                      ..+..+......|++.+|+..++..+.     .+|.|+.+-.+...++.++..+           +...+|...++..+.
T Consensus        44 A~l~la~a~y~~~~y~~A~~~~~~fi~-----~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   44 AQLMLAYAYYKQGDYEEAIAAYERFIK-----LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH-----H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            345567778889999999999988875     5788888888888888776543           233456666655554


Q ss_pred             hHHhhcCCCChHHH--------------HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          378 VYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       378 ~~~~~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                          .|| +++.+.              -.-+.+|+.|...|.+..|...++.+++   ..  |+.+...+.+..|.+..
T Consensus       119 ----~yP-~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~---~y--p~t~~~~~al~~l~~~y  188 (203)
T PF13525_consen  119 ----RYP-NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE---NY--PDTPAAEEALARLAEAY  188 (203)
T ss_dssp             ----H-T-TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH---HS--TTSHHHHHHHHHHHHHH
T ss_pred             ----HCc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HC--CCCchHHHHHHHHHHHH
Confidence                455 444332              2333448888889999999888777665   33  67788888888888887


Q ss_pred             HHHhhhh
Q 012829          444 AEASYKL  450 (455)
Q Consensus       444 ~~~~~~~  450 (455)
                      .++.-+.
T Consensus       189 ~~l~~~~  195 (203)
T PF13525_consen  189 YKLGLKQ  195 (203)
T ss_dssp             HHTT-HH
T ss_pred             HHhCChH
Confidence            7766554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.48  E-value=0.039  Score=55.83  Aligned_cols=78  Identities=18%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC-CC--h-HHHHHHHH
Q 012829          321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ-FH--P-LLGLQYYT  396 (455)
Q Consensus       321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~-~h--p-~~~~~l~~  396 (455)
                      .+..+|++.|.+++.++        |..++++++|+..|+++|.|++|++|+..+|.+.++-... .-  + ...+...+
T Consensus       478 ~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR  549 (579)
T KOG1125|consen  478 NRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR  549 (579)
T ss_pred             cccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH
Confidence            36789999999999874        5678899999999999999999999999999999886552 22  2 34566666


Q ss_pred             HHHHhhhcCC
Q 012829          397 CGKLEWFLGD  406 (455)
Q Consensus       397 La~l~~~~g~  406 (455)
                      ++.+.+..-+
T Consensus       550 ~als~~~~~D  559 (579)
T KOG1125|consen  550 LALSAMNRSD  559 (579)
T ss_pred             HHHHHcCCch
Confidence            6655544433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.088  Score=52.90  Aligned_cols=109  Identities=24%  Similarity=0.213  Sum_probs=79.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      .++....++.|+|+.|+..|..++.+    -+++|+..    .+=..+|..+|+|++|+.-..+.+++        .|.-
T Consensus         6 k~kgnaa~s~~d~~~ai~~~t~ai~l----~p~nhvly----Snrsaa~a~~~~~~~al~da~k~~~l--------~p~w   69 (539)
T KOG0548|consen    6 KEKGNAAFSSGDFETAIRLFTEAIML----SPTNHVLY----SNRSAAYASLGSYEKALKDATKTRRL--------NPDW   69 (539)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHcc----CCCccchh----cchHHHHHHHhhHHHHHHHHHHHHhc--------CCch
Confidence            34556678999999999999888653    23344432    22345788899999999988887763        3666


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      +.-|+.+|..+..+|+|++|+..|.+.+++        -|....++.-|.++.
T Consensus        70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   70 AKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAY  114 (539)
T ss_pred             hhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhh
Confidence            788999999999999999999999998863        233345555555554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.46  E-value=1.2  Score=36.72  Aligned_cols=123  Identities=15%  Similarity=0.096  Sum_probs=87.8

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      -++..+...|+.+.|++.+.+++.+.        |....++++=++++.-+|+-++|++-..++++.    -|+--...-
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~trtac  115 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQTRTAC  115 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCccchHHH
Confidence            34555667899999999999887653        233556778899999999999999999988873    343333344


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh----ccCCCChhHHHHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~----~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      ..+..=|.+|..+|+.+.|..-+..|.++-..    -+=.-.|+..---+||.++..++
T Consensus       116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~ql  174 (175)
T KOG4555|consen  116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFDQL  174 (175)
T ss_pred             HHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHHhc
Confidence            66667799999999999999999998764221    11122455555556777776553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.44  E-value=0.65  Score=44.45  Aligned_cols=122  Identities=16%  Similarity=0.221  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh
Q 012829          302 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR  381 (455)
Q Consensus       302 ~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~  381 (455)
                      ....+...+...+......|++..+++....+++++.  |   +   +..+..=+.+|..-|+...|+.-.+.+-.    
T Consensus       150 ~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~--W---d---a~l~~~Rakc~i~~~e~k~AI~Dlk~ask----  217 (504)
T KOG0624|consen  150 ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP--W---D---ASLRQARAKCYIAEGEPKKAIHDLKQASK----  217 (504)
T ss_pred             HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc--c---h---hHHHHHHHHHHHhcCcHHHHHHHHHHHHh----
Confidence            4455666777777788889999999998888887642  2   2   23344456788899999999887666544    


Q ss_pred             hcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829          382 VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       382 ~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~  444 (455)
                       +..++-   -.+|+++++++..|+.+.+++.+++++.     +.|+|...-....+|..+..
T Consensus       218 -Ls~DnT---e~~ykis~L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  218 -LSQDNT---EGHYKISQLLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             -ccccch---HHHHHHHHHHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHHHHH
Confidence             333443   3488999999999999999999998886     68998765554444444433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.44  E-value=0.058  Score=52.46  Aligned_cols=102  Identities=13%  Similarity=0.164  Sum_probs=78.7

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      ++--|+|++|+..++.-+.+... +|. ....-++..+|+..++-.|+|+.|.++|++++.....+ | +--.-+..-|.
T Consensus       205 yYlLGdf~~ai~~H~~RL~ia~e-fGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g-~r~vEAQscYS  280 (639)
T KOG1130|consen  205 YYLLGDFDQAIHFHKLRLEIAQE-FGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-G-NRTVEAQSCYS  280 (639)
T ss_pred             eeeeccHHHHHHHHHHHHHHHHH-hhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-c-chhHHHHHHHH
Confidence            34557899999888877766433 442 22334677889999999999999999999998866543 2 33445788899


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          397 CGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      ||..|.-+.++++|+.|.++-+.|.+
T Consensus       281 LgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  281 LGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887754

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.36  E-value=0.033  Score=34.00  Aligned_cols=30  Identities=37%  Similarity=0.526  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      -.++.+|.++..+|++++|.+++++|+++-
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            468899999999999999999999999864

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.34  E-value=0.075  Score=52.92  Aligned_cols=66  Identities=14%  Similarity=0.042  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  378 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  378 (455)
                      ....+.+..++..|++++|+..|++++++     .|++.....++++++.+|..+|++++|++.++++++.
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34456677788899999999999999875     3555555567899999999999999999999999986

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.31  E-value=0.14  Score=51.08  Aligned_cols=94  Identities=15%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      .+..|...+..|.+++|+..+..+++     ..|+|+.+..+   .+.+++..++.++|.+.+++++...     |+.  
T Consensus       309 ~YG~A~~~~~~~~~d~A~~~l~~L~~-----~~P~N~~~~~~---~~~i~~~~nk~~~A~e~~~kal~l~-----P~~--  373 (484)
T COG4783         309 QYGRALQTYLAGQYDEALKLLQPLIA-----AQPDNPYYLEL---AGDILLEANKAKEAIERLKKALALD-----PNS--  373 (484)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHH-----hCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhcC-----CCc--
Confidence            34556666777788888887766554     45778877665   5677899999999999999988733     233  


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                       .+...++|..+...|++.+|+..|.+.+.
T Consensus       374 -~~l~~~~a~all~~g~~~eai~~L~~~~~  402 (484)
T COG4783         374 -PLLQLNLAQALLKGGKPQEAIRILNRYLF  402 (484)
T ss_pred             -cHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence             34567889999999999999998887654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.31  E-value=0.039  Score=34.46  Aligned_cols=30  Identities=17%  Similarity=0.362  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQ  380 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  380 (455)
                      ++.+|+.+|..+|+|++|++++++++.+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            356899999999999999999999886554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.28  E-value=0.034  Score=57.08  Aligned_cols=88  Identities=19%  Similarity=0.206  Sum_probs=60.4

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      +--+++++.|++.+++++.+.        +...-++.-++.-+....+|+.|..+++.++..--+.|        -++|.
T Consensus       431 fSLQkdh~~Aik~f~RAiQld--------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYG  494 (638)
T KOG1126|consen  431 FSLQKDHDTAIKCFKRAIQLD--------PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYG  494 (638)
T ss_pred             hhhhhHHHHHHHHHHHhhccC--------CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHh
Confidence            344678888888888776542        22233344455666667788888888888877543333        45778


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          397 CGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ||.+|..+++++.|+-++++|++|
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~I  518 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVEI  518 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhcC
Confidence            888888888888888888877753

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=0.28  Score=50.00  Aligned_cols=105  Identities=12%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             HHHhhhcCChHHHHHHHHHHHH--------------------H---hhcccCCccccHHHHHHHHHHHHHhcccHHHHHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEK--------------------L---QKKLYHPFSVNLMQTREKLIKILMELEDWKEALA  370 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~--------------------~---~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~  370 (455)
                      |..++..|+|+++..+|+.+.+                    +   ..+..+...-...+..+|.+.+++..|+|.+|++
T Consensus       117 AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~e  196 (652)
T KOG2376|consen  117 AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIE  196 (652)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHH
Confidence            4445666777888777775522                    0   0112233333466778899999999999999999


Q ss_pred             HHHHhhhhHHhhcCCC------C-hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829          371 YCQLTIPVYQRVYPQF------H-PLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  418 (455)
Q Consensus       371 ~~~~~l~~~~~~~g~~------h-p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~  418 (455)
                      +++.++.+..+-+-..      + -.+......|+-++..+|+.+||...|...+
T Consensus       197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999988776655421      1 1367778889999999999999999877644

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.09  E-value=0.35  Score=47.32  Aligned_cols=125  Identities=18%  Similarity=0.251  Sum_probs=80.3

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH------hhcC---
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ------RVYP---  384 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~------~~~g---  384 (455)
                      +..+...|+.++|+-.|+.+..+        -|..++++..|...|..+|++++|..+.+.++..+.      .++|   
T Consensus       341 G~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V  412 (564)
T KOG1174|consen  341 GRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV  412 (564)
T ss_pred             cHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee
Confidence            33445556777777666666543        345677888999999999999999988877665443      2333   


Q ss_pred             -------------------CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          385 -------------------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       385 -------------------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                                         .-.|...-.-..+|.++..-|++++++++|++++.++...  .-|....+++....+.+..
T Consensus       413 ~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~a  490 (564)
T KOG1174|consen  413 LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKA  490 (564)
T ss_pred             eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHH
Confidence                               1223333344566888888899999999999998766433  2255555555444444333


Q ss_pred             Hhh
Q 012829          446 ASY  448 (455)
Q Consensus       446 ~~~  448 (455)
                      +++
T Consensus       491 m~~  493 (564)
T KOG1174|consen  491 MEY  493 (564)
T ss_pred             HHH
Confidence            333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.04  E-value=0.18  Score=36.73  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      .+...+++++|+..++.++.+     +|.   -...+...+.++..+|+|++|+..+.+++..     .|+++...
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~   66 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALEL-----DPD---DPELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDPDAR   66 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHh-----Ccc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcHHHH
Confidence            346778999999998888764     344   3445667889999999999999999998863     34666543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.97  E-value=0.32  Score=47.75  Aligned_cols=74  Identities=11%  Similarity=0.010  Sum_probs=56.9

Q ss_pred             cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..+.++........++.++..+|++++|...+++++..     .|.+   ...+..+|.++...|++++|+.++++++..
T Consensus       106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            34566666667777888888899999999988888773     2333   455778899999999999999999988876


Q ss_pred             ch
Q 012829          421 LR  422 (455)
Q Consensus       421 ~~  422 (455)
                      ..
T Consensus       178 ~~  179 (355)
T cd05804         178 WD  179 (355)
T ss_pred             cC
Confidence            54

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.88  E-value=0.39  Score=46.23  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=84.3

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHH--HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc-CCCCh-HHHHHHH
Q 012829          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLM--QTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-PQFHP-LLGLQYY  395 (455)
Q Consensus       320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~--~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~-g~~hp-~~~~~l~  395 (455)
                      .+-|+++++-++.+++..    +.+.-.++  ++.-.|+..+....|+++|+-+..+++++...+- +.+|. ...+.++
T Consensus       135 ls~fq~~Lesfe~A~~~A----~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly  210 (518)
T KOG1941|consen  135 LSVFQKALESFEKALRYA----HNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY  210 (518)
T ss_pred             HHHHHHHHHHHHHHHHHh----hccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence            345667777777776543    33333333  4556788889999999999999999999887665 56666 4689999


Q ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          396 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       396 ~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      .+++.+..+|+.-+|.++.++|.++.- .+|..-. ...-+..+.|+
T Consensus       211 hmaValR~~G~LgdA~e~C~Ea~klal-~~Gdra~-~arc~~~~aDI  255 (518)
T KOG1941|consen  211 HMAVALRLLGRLGDAMECCEEAMKLAL-QHGDRAL-QARCLLCFADI  255 (518)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH-HhCChHH-HHHHHHHHHHH
Confidence            999999999999999999999998654 4565433 33333334444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=94.67  E-value=0.43  Score=50.95  Aligned_cols=100  Identities=18%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829          304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  383 (455)
Q Consensus       304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  383 (455)
                      ..+++.+..+|..++..|++++|..++..+...        ++.-......|+.+|-.+|+.++|+.....+-     .+
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-----HL  202 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-----HL  202 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-----hc
Confidence            345677778888888999999999999888764        33334566778888988888888877644322     22


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          384 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       384 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      -|..+   -.+..+|.+...+|.+++|.-.+.+|++
T Consensus       203 ~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~  235 (895)
T KOG2076|consen  203 NPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ  235 (895)
T ss_pred             CCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            22333   2245566666667777777776666664

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.65  E-value=0.6  Score=44.41  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=81.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhhHHhh--cCCCCh----HHH
Q 012829          319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRV--YPQFHP----LLG  391 (455)
Q Consensus       319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~--~g~~hp----~~~  391 (455)
                      .+|+++-|...+.++..+.....+..-..+.+..++++......+ ++++|..+.++++++.+..  ....||    ...
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            568999999999888776543333334577788999999999999 9999999999999997551  113333    457


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                      ..+..|+..+...+..+...+ ..++++.++..+|. ||.+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~-~~~~  123 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN-KPEV  123 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC-CcHH
Confidence            778888999988887765444 55566666777764 4433

It is also involved in sporulation [].

>TIGR00540 hemY_coli hemY protein

Probab=94.64  E-value=1.6  Score=43.95  Aligned_cols=104  Identities=8%  Similarity=-0.069  Sum_probs=50.7

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+......|+++.|.+...+..+.     .|. +.  -..--.+.++..+|+++.|.+++.++.+    ..|.....+
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~-----~~~-~~--~~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l~~  155 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADH-----AAE-PV--LNLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNILV  155 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhc-----CCC-CH--HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCchHH
Confidence            44455556667777777666554332     111 11  1111344555666666666666665432    222222112


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                         ....+.++...|++++|...+++..+.     +|+||.+..
T Consensus       156 ---~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~  191 (409)
T TIGR00540       156 ---EIARTRILLAQNELHAARHGVDKLLEM-----APRHKEVLK  191 (409)
T ss_pred             ---HHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence               122255566666666666655555442     355554433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.62  E-value=0.46  Score=48.77  Aligned_cols=125  Identities=17%  Similarity=0.180  Sum_probs=94.5

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      ++..+......|+.++|++.++.+...+.. +..-+   .-....++..++.+++|++|.++..++.+..     .+  .
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~---~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-----~W--S  338 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLH---HLCYFELAWCHMFQHDWEEAAEYFLRLLKES-----KW--S  338 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHH---HHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----cc--H
Confidence            456677778889999999999877643221 22111   2345678899999999999999988876622     23  4


Q ss_pred             HHHHHHHHHHHhhhcCCc-------HHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDT-------ENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~-------~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      .+...|..|..+..+|+.       ++|.+++.++-....+.-|..-|.=+=+.++++.-..+
T Consensus       339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~  401 (468)
T PF10300_consen  339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ  401 (468)
T ss_pred             HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence            678888899999999999       89999999999999998898888666677777665443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.49  E-value=1.1  Score=39.48  Aligned_cols=106  Identities=16%  Similarity=0.108  Sum_probs=71.6

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccH-HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      ...|......+++++|+..++.++..      +.+-.+ .-+...|+.+...+|.+++|+......         .++--
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~---------~~~~w  157 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQ------TKDENLKALAALRLARVQLQQKKADAALKTLDTI---------KEESW  157 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHcc------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc---------ccccH
Confidence            34566677788888888777766532      112222 223456899999999999998864331         23333


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  437 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~  437 (455)
                      .+.....-|.++...|+..+|.+.|.+|+...      .+|..+++++
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~------~s~~~~~~lq  199 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESD------ASPAAREILQ  199 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc------CChHHHHHHH
Confidence            44455556999999999999999999999865      3444555544

>PLN03158 methionine aminopeptidase; Provisional

Probab=94.45  E-value=0.029  Score=55.82  Aligned_cols=38  Identities=26%  Similarity=0.704  Sum_probs=30.5

Q ss_pred             CCccCccccCcCCCcCCCCCC-------ccccCCHHHhHhhhhhhH
Q 012829           26 SISRCDGCFASSNLKKCSACQ-------VVWYCGSNCQKLDWKLHR   64 (455)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~-------~~~yCs~~C~~~~~~~H~   64 (455)
                      ....|..|.+.. ...|+.|.       ..+|||++|.+.+|+.||
T Consensus         8 ~~~~c~~c~~~a-~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk   52 (396)
T PLN03158          8 SPLACARCSKPA-HLQCPKCLELKLPREGASFCSQDCFKAAWSSHK   52 (396)
T ss_pred             CcccccCCCCcc-cccCccchhcCCCCCCceeECHHHHHHHHHHHH
Confidence            345699999875 48888883       278999999999998775

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=94.45  E-value=0.064  Score=40.69  Aligned_cols=50  Identities=16%  Similarity=0.311  Sum_probs=40.3

Q ss_pred             hcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829          361 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  416 (455)
Q Consensus       361 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~  416 (455)
                      ++|+|++|+.++++++.....     .+ -...++.+|.++...|++++|...+++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            368999999999998886543     23 445677799999999999999999988

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=94.37  E-value=0.29  Score=52.22  Aligned_cols=95  Identities=21%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ..-+.+.|..++..|++.+|+.++..+...      +.. ..+.....+|..|+.+|.+++|++++.+++..     -|+
T Consensus       414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~------~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----~p~  481 (895)
T KOG2076|consen  414 VDLYLDLADALTNIGKYKEALRLLSPITNR------EGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-----APD  481 (895)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhcC------ccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence            344566788888999999999887666431      111 11567788999999999999999999988873     345


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTE  416 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~  416 (455)
                      |.   .....|+.++..+|+.++|...+..
T Consensus       482 ~~---D~Ri~Lasl~~~~g~~EkalEtL~~  508 (895)
T KOG2076|consen  482 NL---DARITLASLYQQLGNHEKALETLEQ  508 (895)
T ss_pred             ch---hhhhhHHHHHHhcCCHHHHHHHHhc
Confidence            54   4577889999999999976665544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=94.29  E-value=0.54  Score=43.75  Aligned_cols=81  Identities=12%  Similarity=0.099  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  429 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  429 (455)
                      ......+..+...|+|++|.+.++.++.    .+| ..|......+.||.++...+++++|+..+++.++..     |+|
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~  102 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDN----RYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTH  102 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCC
Confidence            3345566777889999999999888776    344 557887889999999999999999999999988743     777


Q ss_pred             hhHHHHHHHHH
Q 012829          430 PFMKELILKLE  440 (455)
Q Consensus       430 p~~~~~~~~l~  440 (455)
                      |.+-.++=++.
T Consensus       103 ~~~~~a~Y~~g  113 (243)
T PRK10866        103 PNIDYVLYMRG  113 (243)
T ss_pred             CchHHHHHHHH
Confidence            77765554444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.27  E-value=1.9  Score=39.42  Aligned_cols=105  Identities=19%  Similarity=0.231  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc---cCCccccHHH-------HHHHHHHHHHhcccHHHHHHHHHHhh
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL---YHPFSVNLMQ-------TREKLIKILMELEDWKEALAYCQLTI  376 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~---l~~~~~~~~~-------~~~~L~~~~~~~g~~~~A~~~~~~~l  376 (455)
                      +..+..++..++..|+|.+|..-|+.++...+.+   --|..+...+       .+.|..+.+...|+|-+++++|..+|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            4456677888889999999999998776532221   2334443332       34567788888999999999998877


Q ss_pred             hhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          377 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       377 ~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      .        -||.-..+||.=|+.+...-...+|..-++++++
T Consensus       258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~  292 (329)
T KOG0545|consen  258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE  292 (329)
T ss_pred             h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence            6        4566678899999999999999999999999887

>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]

Probab=94.25  E-value=0.015  Score=47.41  Aligned_cols=38  Identities=34%  Similarity=0.885  Sum_probs=31.7

Q ss_pred             CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHH--hhHh
Q 012829           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRL--ECQV   69 (455)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~--EC~~   69 (455)
                      ..+|.-|++.....+||.|.++ |||-.|    |+.|+.  +|+.
T Consensus         5 t~tC~ic~e~~~KYKCpkC~vP-YCSl~C----fKiHk~tPq~~~   44 (157)
T KOG2857|consen    5 TTTCVICLESEIKYKCPKCSVP-YCSLPC----FKIHKSTPQCET   44 (157)
T ss_pred             eeeehhhhcchhhccCCCCCCc-cccchh----hhhccCCccccc
Confidence            4689999998778999999987 999999    467877  7753

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.25  E-value=0.2  Score=47.69  Aligned_cols=80  Identities=23%  Similarity=0.146  Sum_probs=64.0

Q ss_pred             HHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcC-CcHHHHHHHHHHHHhchh--ccCCCChhHHHH
Q 012829          359 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLG-DTENAIKSMTEAVEILRI--THGTNSPFMKEL  435 (455)
Q Consensus       359 ~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g-~~~eA~~~l~~A~~i~~~--~~G~~hp~~~~~  435 (455)
                      ...+||++.|..++.++-.......|..--.++..+|++|+-....+ ++++|..++++|.++++.  ..+..||...++
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35679999999999988776664444455567999999999999999 999999999999999877  245677777665


Q ss_pred             HHH
Q 012829          436 ILK  438 (455)
Q Consensus       436 ~~~  438 (455)
                      +-.
T Consensus        83 r~~   85 (278)
T PF08631_consen   83 RLS   85 (278)
T ss_pred             HHH
Confidence            433

It is also involved in sporulation [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.25  E-value=0.35  Score=48.63  Aligned_cols=62  Identities=18%  Similarity=0.168  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      .+..++.++...++|++|.+++++++..        +|.. ..+..||.++..+|+.++|..++++++...
T Consensus       330 l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4555777778888888888887777763        1222 113356777888888888888888777654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.11  E-value=1.1  Score=44.73  Aligned_cols=90  Identities=21%  Similarity=0.094  Sum_probs=68.2

Q ss_pred             cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +-|+++.+   ...|+..|...++.++|..-+.+++..-..        -+..++.||++|.+++++++|..++++-++.
T Consensus       427 ~kPnDsRl---w~aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  427 LKPNDSRL---WVALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             cCCCchHH---HHHHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            44555543   456889999999999999988887764321        4688999999999999999999999999987


Q ss_pred             chhccCCCChhHHHHHHHHHHH
Q 012829          421 LRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       421 ~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      . ..-|...|.+.....=|+.=
T Consensus       496 ~-~~eg~~~~~t~ka~~fLA~~  516 (559)
T KOG1155|consen  496 S-ELEGEIDDETIKARLFLAEY  516 (559)
T ss_pred             H-HhhcccchHHHHHHHHHHHH
Confidence            7 44477777666655555543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.06  E-value=0.52  Score=47.16  Aligned_cols=108  Identities=15%  Similarity=0.149  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829          304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  383 (455)
Q Consensus       304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  383 (455)
                      ..++.++-.++..++.+|+|++|+.-|..++.+.     |+-+..   +.|.+..|...|+|++-.+.+.+++++     
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-----p~epiF---YsNraAcY~~lgd~~~Vied~TkALEl-----  178 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC-----PDEPIF---YSNRAACYESLGDWEKVIEDCTKALEL-----  178 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC-----CCCchh---hhhHHHHHHHHhhHHHHHHHHHHHhhc-----
Confidence            4556677778888899999999999999998764     222222   457888999999999999999999883     


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829          384 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  428 (455)
Q Consensus       384 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~  428 (455)
                         .|.....|+.=|..+..+|++.||+.-+ -++-|++---+..
T Consensus       179 ---~P~Y~KAl~RRA~A~E~lg~~~eal~D~-tv~ci~~~F~n~s  219 (606)
T KOG0547|consen  179 ---NPDYVKALLRRASAHEQLGKFDEALFDV-TVLCILEGFQNAS  219 (606)
T ss_pred             ---CcHHHHHHHHHHHHHHhhccHHHHHHhh-hHHHHhhhcccch
Confidence               4777888999999999999999987543 2455555444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.05  E-value=0.38  Score=44.67  Aligned_cols=89  Identities=22%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      .++.+--+...|+|.+|..-++.-+.-|     |+++.++..+|=||..++.+|++++|...+..+..-     =|+||-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence            5666667778899999998877766644     588889999999999999999999999999888872     277888


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 012829          432 MKELILKLEEAQAEASYKL  450 (455)
Q Consensus       432 ~~~~~~~l~~~~~~~~~~~  450 (455)
                      .-|.+-+|.....++...+
T Consensus       214 ApdallKlg~~~~~l~~~d  232 (262)
T COG1729         214 APDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHH
Confidence            8899999988887776554

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=94.03  E-value=1.1  Score=41.52  Aligned_cols=84  Identities=19%  Similarity=0.142  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh-hhcCCcHHHHHHHHHHHHhchhccCC-CChhHHHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE-WFLGDTENAIKSMTEAVEILRITHGT-NSPFMKELILKLEEAQ  443 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~-~~~g~~~eA~~~l~~A~~i~~~~~G~-~hp~~~~~~~~l~~~~  443 (455)
                      ++|...++.++.+.+..+||.||...-...+.+..+ .-+|+.++|..+.++|.+-.....+. +-..+.+....|+-++
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLr  222 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLR  222 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHH
Confidence            578889999999999999999998755555556655 45899999998877776555433331 1223677777777777


Q ss_pred             HHHhhh
Q 012829          444 AEASYK  449 (455)
Q Consensus       444 ~~~~~~  449 (455)
                      ..+.-=
T Consensus       223 dNl~lW  228 (236)
T PF00244_consen  223 DNLTLW  228 (236)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            766543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=94.00  E-value=0.85  Score=43.63  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+-+.+..++.+|+|++|+.-|.+..+     +.|+|+.+   ..+=+.+|..+..|..|..-|..++..-+.+      
T Consensus        99 EiKE~GN~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~---~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y------  164 (536)
T KOG4648|consen   99 EIKERGNTYFKQGKYEEAIDCYSTAIA-----VYPHNPVY---HINRALAYLKQKSFAQAEEDCEAAIALDKLY------  164 (536)
T ss_pred             HHHHhhhhhhhccchhHHHHHhhhhhc-----cCCCCccc---hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH------
Confidence            355677788999999999999887765     45666654   3345668999999999988888887754422      


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                        ...|..=|..-..+|...||.+-++.+++
T Consensus       165 --~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  165 --VKAYSRRMQARESLGNNMEAKKDCETVLA  193 (536)
T ss_pred             --HHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence              22333334445556666777777666665

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=93.95  E-value=0.29  Score=49.20  Aligned_cols=98  Identities=5%  Similarity=-0.032  Sum_probs=69.8

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh---------------
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------------  378 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------------  378 (455)
                      +......|++++|+..+++..+     ..|+|+..   ...++.+|...|+|++|++++.++...               
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~-----~~P~~~~a---l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a  231 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLE-----VAPRHPEV---LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA  231 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh-----cCCCCHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3445678999999998877765     34666644   555788899999999999665554421               


Q ss_pred             H-------------------HhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          379 Y-------------------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       379 ~-------------------~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      +                   -+-+|..+|........+|..+...|+.++|.+.++++++
T Consensus       232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~  291 (398)
T PRK10747        232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK  291 (398)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            0                   0123434444455567788999999999999999998876

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.76  E-value=0.15  Score=33.32  Aligned_cols=37  Identities=14%  Similarity=0.192  Sum_probs=30.6

Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                      .++.+|.++..+|++++|++.|+++++     ..|++|....
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~-----~~P~~~~a~~   39 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA-----LDPDDPEAWR   39 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCcCCHHHHH
Confidence            467899999999999999999999998     3567765443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=93.69  E-value=1.1  Score=42.97  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      +++...+.+..+...|.+.+|+..|-.+.+.        +|....+...=+.+|+.+|+-+-|+.-+.++|+.-      
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK------  102 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK------  102 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC------
Confidence            3444445566677888899999988877653        45555667777889999999988988877777644      


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                        |...-....=|.+++.+|++++|+.-+.+.++     +.|..-...+.+.+|+-+
T Consensus       103 --pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-----~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  103 --PDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-----HEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             --ccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-----cCCCcchhHHHHHHHHhH
Confidence              44444555668889999999999988887765     445555666666666554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=93.64  E-value=0.38  Score=47.56  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..+..+...|+|++|++++++++..     .+.+   ...++++|.++..+|++++|+..+++|+++
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l   65 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDL-----DPNN---AELYADRAQANIKLGNFTEAVADANKAIEL   65 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456677889999999999999873     2344   456889999999999999999999999985

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.59  E-value=0.73  Score=44.09  Aligned_cols=98  Identities=15%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829          322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  401 (455)
Q Consensus       322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~  401 (455)
                      ++++|..+|+.+..    .+++    ...+...++.+.+.+|+|++|.+.+..++..     .+.+|.   .+.|++.+.
T Consensus       182 ~~~~A~y~f~El~~----~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~-----~~~~~d---~LaNliv~~  245 (290)
T PF04733_consen  182 KYQDAFYIFEELSD----KFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEK-----DPNDPD---TLANLIVCS  245 (290)
T ss_dssp             CCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------CCHHH---HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh----ccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----ccCCHH---HHHHHHHHH
Confidence            68899998887642    2333    2455677889999999999999998887652     245554   578899999


Q ss_pred             hhcCCc-HHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          402 WFLGDT-ENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       402 ~~~g~~-~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      ..+|+. +.+..++.+...     ..|+||+++++..+-.
T Consensus       246 ~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~~~~  280 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAEKEA  280 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHHHHH
T ss_pred             HHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHHHHH
Confidence            999998 556666655333     3689999998875543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=93.57  E-value=1.6  Score=47.34  Aligned_cols=123  Identities=16%  Similarity=0.142  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc--ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS--VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~--~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      +.+.+.|.-.+..|.+.+|...+..++.....+..+..  ..-+-+.++|+.++-..++++.|.+.|..++.        
T Consensus       453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------  524 (1018)
T KOG2002|consen  453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------  524 (1018)
T ss_pred             HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------
Confidence            34455666667888999999988888776433333332  22345689999999999999999999888776        


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      .||.....+..||.+....+...+|..++..++.+     ...+|....++..+.-..
T Consensus       525 ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~k  577 (1018)
T KOG2002|consen  525 EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLKK  577 (1018)
T ss_pred             HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHhh
Confidence            78888888999998888889999999999999874     456777777776554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.48  E-value=1.3  Score=44.18  Aligned_cols=87  Identities=17%  Similarity=0.111  Sum_probs=65.6

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH
Q 012829          321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL  400 (455)
Q Consensus       321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l  400 (455)
                      .+...|++-|+.++++        +|-=.++.+.|+++|..++-..=|+-|+++++.     +-|+.+.+   +..||+.
T Consensus       378 KNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~-----~kPnDsRl---w~aLG~C  441 (559)
T KOG1155|consen  378 KNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE-----LKPNDSRL---WVALGEC  441 (559)
T ss_pred             cccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-----cCCCchHH---HHHHHHH
Confidence            3456677777777664        333456778888888888877778888888876     33566654   6678999


Q ss_pred             hhhcCCcHHHHHHHHHHHHhchh
Q 012829          401 EWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       401 ~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      |..+++.+||++-+.+|+..-..
T Consensus       442 Y~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  442 YEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHhccHHHHHHHHHHHHhcccc
Confidence            99999999999999999874433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.47  E-value=1.1  Score=39.30  Aligned_cols=99  Identities=11%  Similarity=0.059  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      +.-...+..+...|++.||...|++++.   .++..+ +   .++-.++++....+++.+|...++++.+.-. -.-..|
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qals---G~fA~d-~---a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-a~r~pd  161 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALS---GIFAHD-A---AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-AFRSPD  161 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhc---cccCCC-H---HHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-ccCCCC
Confidence            3444556667788999999999988864   333322 2   2344577888889999999887776544210 111222


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      +     +.-+|..+..+|++.+|+..++.|++
T Consensus       162 ~-----~Ll~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         162 G-----HLLFARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             c-----hHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            2     44458889999999999999999886

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.44  E-value=0.24  Score=46.48  Aligned_cols=60  Identities=12%  Similarity=0.206  Sum_probs=52.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  378 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  378 (455)
                      .++|..+...|.++.|++-++.++.+        ++...+++..|+.+|..+|++++|++.++++|++
T Consensus       119 cNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  119 CNRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence            35666777888999999998888875        6778899999999999999999999999999884

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.32  E-value=0.19  Score=30.51  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVY  379 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  379 (455)
                      ++..+++.+|..+|++++|+..+++++.+.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            467789999999999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=93.29  E-value=1.3  Score=48.09  Aligned_cols=90  Identities=16%  Similarity=0.001  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch-hcc----
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR-ITH----  425 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~-~~~----  425 (455)
                      +...|+.++...|+++.|....+++++     .+|.+   ...|..|+.+|...|+.++|.+.+++..+.-- +..    
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~-----~~p~~---~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~  567 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYG-----MGPEK---LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW  567 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhC-----CCCCC---CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence            455666667777777777666555443     12333   23577888899999999999999887664321 111    


Q ss_pred             ------------C-CCChhHHHHHHHHHHHHHHHhh
Q 012829          426 ------------G-TNSPFMKELILKLEEAQAEASY  448 (455)
Q Consensus       426 ------------G-~~hp~~~~~~~~l~~~~~~~~~  448 (455)
                                  | ..||...++..+|.++..++..
T Consensus       568 i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~  603 (697)
T PLN03081        568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE  603 (697)
T ss_pred             EEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence                        1 3599999999999999887754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.17  E-value=0.26  Score=51.13  Aligned_cols=68  Identities=19%  Similarity=0.075  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  429 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  429 (455)
                      .++..++..+...|++++|..++++++..-        |. ...+..+|+++...|++++|...+++|+.     +.|.+
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-----L~P~~  486 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFN-----LRPGE  486 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC
Confidence            456666777777899999999999998855        32 56888999999999999999999999987     45666


Q ss_pred             hh
Q 012829          430 PF  431 (455)
Q Consensus       430 p~  431 (455)
                      |.
T Consensus       487 pt  488 (517)
T PRK10153        487 NT  488 (517)
T ss_pred             ch
Confidence            63

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=0.7  Score=45.30  Aligned_cols=86  Identities=8%  Similarity=0.054  Sum_probs=63.2

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      +|.++.+-..++..+..-|.+++++.++++.+..+        |.. .....||.+......+.+|..+|..|+.+    
T Consensus       434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~----  500 (564)
T KOG1174|consen  434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------PDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ----  500 (564)
T ss_pred             CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------ccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc----
Confidence            56677777788888888899999999988877754        222 23567899999999999999999999874    


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHh
Q 012829          425 HGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       425 ~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                       .|...   ..++-|..+..+.+
T Consensus       501 -dP~~~---~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  501 -DPKSK---RTLRGLRLLEKSDD  519 (564)
T ss_pred             -Cccch---HHHHHHHHHHhccC
Confidence             44444   44445555555444

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.09  E-value=0.21  Score=31.63  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +++..|+.+-+..++|++|+.-+++++++.++++|+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            3567788999999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=92.98  E-value=0.78  Score=45.71  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=61.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      +...++..+|+.+..+++..     .|.+   ...+...+..++..++++.|++.++++....        |.--..++.
T Consensus       210 ~l~~~~E~~AI~ll~~aL~~-----~p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~  273 (395)
T PF09295_consen  210 YLLMNEEVEAIRLLNEALKE-----NPQD---SELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQ  273 (395)
T ss_pred             HHhcCcHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHH
Confidence            33445556666666666532     2222   5556667788899999999999999988844        555567889


Q ss_pred             HHHHhhhcCCcHHHHHHHH
Q 012829          397 CGKLEWFLGDTENAIKSMT  415 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~  415 (455)
                      ||++|..+|++++|+-.+.
T Consensus       274 La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  274 LAECYIQLGDFENALLALN  292 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHh
Confidence            9999999999999987655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.92  E-value=0.2  Score=30.24  Aligned_cols=30  Identities=17%  Similarity=0.286  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVY  379 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  379 (455)
                      .+...++.++...|+|++|++++++++.+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            456789999999999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]

Probab=92.88  E-value=0.092  Score=53.96  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=33.2

Q ss_pred             cccccCCCCCCCcEEE--E-eC-CEEEEEEecccCCCCeeEEeec
Q 012829          182 VISIINHSCLPNAVLV--F-EG-RLAVVRAVQHVPKGAEVLISYI  222 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~--~-~~-~~~~v~a~r~I~~GeEi~isY~  222 (455)
                      .+-+.|||=.|||...  + .| ..+-++|.|.|.+|||||..|.
T Consensus       665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYr  709 (739)
T KOG1079|consen  665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYR  709 (739)
T ss_pred             hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeec
Confidence            4568899999999652  2 23 4577999999999999999994

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.71  E-value=1.1  Score=39.20  Aligned_cols=104  Identities=14%  Similarity=0.111  Sum_probs=63.4

Q ss_pred             cccHHHHHHHHHHHHHhcccH---HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCC----cHHHHHHHHHH
Q 012829          345 SVNLMQTREKLIKILMELEDW---KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGD----TENAIKSMTEA  417 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~---~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~----~~eA~~~l~~A  417 (455)
                      +|.-.+.+++.+.++..+.++   .++.++.+.++.-++..+- -+|.....++.||..+..+|.    ..+|..++++|
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            444466667777777766554   4577777777776665442 234444668888888876653    45677777777


Q ss_pred             HHhchhc--cCCCChhHHHHHHHHHHH---HHHHhhh
Q 012829          418 VEILRIT--HGTNSPFMKELILKLEEA---QAEASYK  449 (455)
Q Consensus       418 ~~i~~~~--~G~~hp~~~~~~~~l~~~---~~~~~~~  449 (455)
                      .+-+++.  .-|+...++..+++-..+   ..|+...
T Consensus       100 ~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~  136 (186)
T PF06552_consen  100 TEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence            7777655  457788887766655443   4455433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.61  E-value=2.1  Score=36.05  Aligned_cols=74  Identities=16%  Similarity=0.077  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-CCC
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFH  387 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~h  387 (455)
                      .+...+......|++++|+..++.++.+        +|.--.....++.+|...|+..+|++++++....+..-+| +.+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps  135 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS  135 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence            3344455567889999999998888764        3333445667899999999999999999999999988888 555


Q ss_pred             hHH
Q 012829          388 PLL  390 (455)
Q Consensus       388 p~~  390 (455)
                      |.+
T Consensus       136 ~~~  138 (146)
T PF03704_consen  136 PET  138 (146)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=7.7  Score=35.68  Aligned_cols=115  Identities=11%  Similarity=0.075  Sum_probs=74.8

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCcccc---HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-HH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN---LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GL  392 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~---~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~  392 (455)
                      +....+|++|..-+.++.+-     +++|..   -+..+...+........|.|+..+++++...|-..-.   |.+ ++
T Consensus        41 fRnAk~feKakdcLlkA~~~-----yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs---pdtAAm  112 (308)
T KOG1585|consen   41 FRNAKKFEKAKDCLLKASKG-----YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS---PDTAAM  112 (308)
T ss_pred             HHhhccHHHHHHHHHHHHHH-----HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC---cchHHH
Confidence            44445777776655554432     233333   3456667777778889999999999999998875544   444 34


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      .+-+-|++ .+.-+.++|+.+|++|+.+++.. |.+| ...++..++..+
T Consensus       113 aleKAak~-lenv~Pd~AlqlYqralavve~~-dr~~-ma~el~gk~sr~  159 (308)
T KOG1585|consen  113 ALEKAAKA-LENVKPDDALQLYQRALAVVEED-DRDQ-MAFELYGKCSRV  159 (308)
T ss_pred             HHHHHHHH-hhcCCHHHHHHHHHHHHHHHhcc-chHH-HHHHHHHHhhhH
Confidence            55555664 45568899999999999998875 3333 344444444444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=92.31  E-value=0.71  Score=50.66  Aligned_cols=86  Identities=21%  Similarity=0.238  Sum_probs=52.2

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829          318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  397 (455)
Q Consensus       318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  397 (455)
                      ...|+.++|+..++++.       .|.+.. ...+..++.+|..+|+|++|+++++++++.    .| ..|.+   +..|
T Consensus        79 ~~~G~~~~A~~~~eka~-------~p~n~~-~~~llalA~ly~~~gdyd~Aiely~kaL~~----dP-~n~~~---l~gL  142 (822)
T PRK14574         79 GWAGRDQEVIDVYERYQ-------SSMNIS-SRGLASAARAYRNEKRWDQALALWQSSLKK----DP-TNPDL---ISGM  142 (822)
T ss_pred             HHcCCcHHHHHHHHHhc-------cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CC-CCHHH---HHHH
Confidence            34466667766665553       232322 233444566777788888888887777662    22 33433   3355


Q ss_pred             HHHhhhcCCcHHHHHHHHHHHH
Q 012829          398 GKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       398 a~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      +.++...++.++|+..++++..
T Consensus       143 a~~y~~~~q~~eAl~~l~~l~~  164 (822)
T PRK14574        143 IMTQADAGRGGVVLKQATELAE  164 (822)
T ss_pred             HHHHhhcCCHHHHHHHHHHhcc
Confidence            7777777888777777666654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=92.31  E-value=1.6  Score=40.16  Aligned_cols=99  Identities=16%  Similarity=0.043  Sum_probs=68.1

Q ss_pred             cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .++.+..++..   ++...+..|+|.+|+...+++..+.     |..   +-.++-+|.+|...|++++|...|.+|+++
T Consensus        95 ~~~~d~~ll~~---~gk~~~~~g~~~~A~~~~rkA~~l~-----p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L  163 (257)
T COG5010          95 AYPKDRELLAA---QGKNQIRNGNFGEAVSVLRKAARLA-----PTD---WEAWNLLGAALDQLGRFDEARRAYRQALEL  163 (257)
T ss_pred             cCcccHHHHHH---HHHHHHHhcchHHHHHHHHHHhccC-----CCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence            44444444433   7778888999999999988877632     333   345788899999999999999999999985


Q ss_pred             chhc--cCCCChhHHHHHHHHHHHHHHHhhhh
Q 012829          421 LRIT--HGTNSPFMKELILKLEEAQAEASYKL  450 (455)
Q Consensus       421 ~~~~--~G~~hp~~~~~~~~l~~~~~~~~~~~  450 (455)
                      .-..  .=.++-+...+...+++++.-+.+-+
T Consensus       164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~  195 (257)
T COG5010         164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAY  195 (257)
T ss_pred             ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            4332  11234444555566666666555544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.25  E-value=5.7  Score=37.53  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=71.6

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHH---------------h
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQL---------------T  375 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~---------------~  375 (455)
                      ..++......|++.++..++..+++..     |.+   ..+.-.++..|...|+.+.|...+..               -
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~-----~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~  209 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAA-----PEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ  209 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhC-----ccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence            344556678889999998888887642     222   34455577778887877655443332               1


Q ss_pred             hhhHHhh--cC---------CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh------------------ccC
Q 012829          376 IPVYQRV--YP---------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI------------------THG  426 (455)
Q Consensus       376 l~~~~~~--~g---------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~------------------~~G  426 (455)
                      ++..++.  .|         ...|.-.-.-+.||+.+...|++++|.++|-   .++++                  .+|
T Consensus       210 i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll---~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         210 IELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL---ALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhcccccCcHHHHHHHHHHHhcC
Confidence            2222211  11         0122222446788999999999999988754   33333                  356


Q ss_pred             CCChhHHHHHHHHHH
Q 012829          427 TNSPFMKELILKLEE  441 (455)
Q Consensus       427 ~~hp~~~~~~~~l~~  441 (455)
                      +.||.+...+++|..
T Consensus       287 ~~Dp~~~~~RRkL~s  301 (304)
T COG3118         287 PADPLVLAYRRKLYS  301 (304)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            666666666655543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.22  E-value=0.25  Score=31.24  Aligned_cols=36  Identities=22%  Similarity=0.192  Sum_probs=32.8

Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  428 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~  428 (455)
                      .+..||.+-...++|++|..-+++|++|.+..+.++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~   38 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE   38 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            577899999999999999999999999999988764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.08  E-value=1.8  Score=38.02  Aligned_cols=104  Identities=11%  Similarity=0.094  Sum_probs=72.5

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      .+.+.-+...|+.++|++.|.++.....     +.-..+++.-+++.+.+..|+|.....+..++-...+.--+..-...
T Consensus        40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   40 EDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            3456667788999999999988766432     23456777888999999999999999999998887776221111111


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      ...+.  |..+...++|.+|-..+-.+..-+
T Consensus       115 lk~~~--gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  115 LKVYE--GLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHH--HHHHHHhchHHHHHHHHHccCcCC
Confidence            22222  445567899999988887776433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.01  E-value=0.074  Score=31.69  Aligned_cols=28  Identities=29%  Similarity=0.731  Sum_probs=20.3

Q ss_pred             ccCccccCcCCCcCCCCCCccccCCHHHhH
Q 012829           28 SRCDGCFASSNLKKCSACQVVWYCGSNCQK   57 (455)
Q Consensus        28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~   57 (455)
                      ..|..|.. .....|+.|+.. |||-+|.+
T Consensus         3 ~~C~vC~~-~~kY~Cp~C~~~-~CSl~C~k   30 (30)
T PF04438_consen    3 KLCSVCGN-PAKYRCPRCGAR-YCSLACYK   30 (30)
T ss_dssp             EEETSSSS-EESEE-TTT--E-ESSHHHHH
T ss_pred             CCCccCcC-CCEEECCCcCCc-eeCcEeEC
Confidence            46888888 567899999986 99999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=92.01  E-value=2.6  Score=36.31  Aligned_cols=75  Identities=11%  Similarity=0.054  Sum_probs=60.3

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      ....++..+..+.-+..+|++++|..+++-+..     |.++.|..   ++.||..+..++++++|+..|..|..+-..-
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-----~d~~n~~Y---~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d  104 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI-----YDFYNPDY---TMGLAAVCQLKKQFQKACDLYAVAFTLLKND  104 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCcCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            456677777888888999999999998775433     55666654   6899999999999999999999998876655


Q ss_pred             cCC
Q 012829          425 HGT  427 (455)
Q Consensus       425 ~G~  427 (455)
                      ++|
T Consensus       105 p~p  107 (165)
T PRK15331        105 YRP  107 (165)
T ss_pred             CCc
Confidence            555

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.80  E-value=1.2  Score=43.08  Aligned_cols=101  Identities=12%  Similarity=0.046  Sum_probs=72.9

Q ss_pred             ChHHHHHHHHHHHHHhhc-ccCCcc-ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829          322 NHQEVVSTYKMIEKLQKK-LYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  399 (455)
Q Consensus       322 ~~~~a~~~~~~~l~~~~~-~l~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  399 (455)
                      |+++|.-...++.++... .++.-| -+..-+.++++.++..+|..-.|.++|+.+..+.-  -..+-+..+..+.-+|.
T Consensus       177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal--~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL--QHGDRALQARCLLCFAD  254 (518)
T ss_pred             hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--HhCChHHHHHHHHHHHH
Confidence            344454444445444322 123333 23445677899999999999999999999877542  33567777888999999


Q ss_pred             HhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          400 LEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       400 l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      +|.+.|+.+.|..-|++|+.++.-.
T Consensus       255 IyR~~gd~e~af~rYe~Am~~m~~~  279 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQAMGTMASL  279 (518)
T ss_pred             HHHhcccHhHHHHHHHHHHHHHhhh
Confidence            9999999999999999999887543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.75  E-value=0.37  Score=31.44  Aligned_cols=35  Identities=14%  Similarity=0.038  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      +...++.+|..+|++++|.+.+++++..     -|++|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-----~P~~~~a   37 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL-----DPDDPEA   37 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCCHHH
Confidence            4667999999999999999999998883     2466543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.71  E-value=2.9  Score=33.43  Aligned_cols=102  Identities=12%  Similarity=0.136  Sum_probs=62.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc--HHH-HHHHHH-HHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--LMQ-TREKLI-KILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~--~~~-~~~~L~-~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .|..++..|++-+|+++.++.....     .++..  ++. ....+. ..-....+-+-...|..-+++.+.+... -+|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence            4566788999999999988876542     22221  222 222222 1112334555566777777887776554 344


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .-|..++.||+-+-..--|++++..-++++.|
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            44888888888655555667777666666654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=91.63  E-value=1.4  Score=46.33  Aligned_cols=118  Identities=13%  Similarity=0.071  Sum_probs=78.7

Q ss_pred             cccCCCCCcCCHHHHHHHHHHHHHHHHHHHH-----hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHH
Q 012829          286 FTCQQCGLVRSKEEIKKIASEVNILSKKTLA-----LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM  360 (455)
Q Consensus       286 ~~C~~C~~~~~~~~~~~~~~e~~~l~~~a~~-----~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~  360 (455)
                      |.|.--.-..++.-..+.++-.......|..     ..++++|+++...++..+++        ++-...+...++.++.
T Consensus       459 lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~AL  530 (777)
T KOG1128|consen  459 LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAAL  530 (777)
T ss_pred             hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHH
Confidence            4454333344444444444333332333332     24567888988888887765        5666778888898999


Q ss_pred             hcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          361 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       361 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ..++|+.|++.+.....     +-|+|   +-..+||+..|...|+..+|...+++|++
T Consensus       531 qlek~q~av~aF~rcvt-----L~Pd~---~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  531 QLEKEQAAVKAFHRCVT-----LEPDN---AEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             HHhhhHHHHHHHHHHhh-----cCCCc---hhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence            99999999888776544     33455   67788998888888877777777777764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.35  E-value=2.1  Score=39.74  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=32.9

Q ss_pred             hhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          375 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       375 ~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      +.-+|+.+-+++.|- -..++.+|.++..+|+++||+..++.|++
T Consensus       192 AfyifeE~s~k~~~T-~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPT-PLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             HHHHHHHHhcccCCC-hHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            344555555545443 35678889999999999999999999883

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.35  E-value=0.26  Score=29.46  Aligned_cols=28  Identities=21%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .++++|.++..+|++++|+..+++.++-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5789999999999999999999998864

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=91.21  E-value=5.7  Score=37.50  Aligned_cols=117  Identities=13%  Similarity=0.045  Sum_probs=78.0

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc---ccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      .+..++..|++..|...|..+.++     .++|+.+.-.   ++.++..+   ..-.++..+.++++.       .+|-.
T Consensus       162 Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g---~aeaL~~~a~~~~ta~a~~ll~~al~-------~D~~~  226 (287)
T COG4235         162 LGRAYMALGRASDALLAYRNALRL-----AGDNPEILLG---LAEALYYQAGQQMTAKARALLRQALA-------LDPAN  226 (287)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHH---HHHHHHHhcCCcccHHHHHHHHHHHh-------cCCcc
Confidence            455677889999999999988764     3556655443   34444333   233456666555554       33333


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  449 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~  449 (455)
                      + -.++-||..+...|+|.+|...++.-++    ..-++.|-..-+...+.......+.+
T Consensus       227 i-ral~lLA~~afe~g~~~~A~~~Wq~lL~----~lp~~~~rr~~ie~~ia~~~~~~~~~  281 (287)
T COG4235         227 I-RALSLLAFAAFEQGDYAEAAAAWQMLLD----LLPADDPRRSLIERSIARALAQRSAQ  281 (287)
T ss_pred             H-HHHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCCCchHHHHHHHHHHHHhccccc
Confidence            2 4477789999999999999998887766    45677776666777776666655543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=91.19  E-value=1.4  Score=45.63  Aligned_cols=115  Identities=17%  Similarity=0.095  Sum_probs=79.6

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .++.++...+..+.|...+...+.++..     +|.|...+.+   .+-.+..+|+-++|.++.+..+.        +.+
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k-----~~eHgeslAm---kGL~L~~lg~~~ea~~~vr~glr--------~d~   72 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKK-----FPEHGESLAM---KGLTLNCLGKKEEAYELVRLGLR--------NDL   72 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh-----CCccchhHHh---ccchhhcccchHHHHHHHHHHhc--------cCc
Confidence            4566677777777777777777777652     4566655443   34456678999999999888776        333


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                      .-.+-+.-+|.++..-.+|++|++.|+.|+.+     +++.   .+++..|.-++.+++
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN---~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-----EKDN---LQILRDLSLLQIQMR  123 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHHHH
Confidence            33355667788999999999999999999984     4444   445555555544444

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=90.94  E-value=0.14  Score=50.70  Aligned_cols=76  Identities=16%  Similarity=0.129  Sum_probs=66.6

Q ss_pred             HhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829          374 LTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  449 (455)
Q Consensus       374 ~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~  449 (455)
                      +++-+.++++|+.||.+.....--|-+|...|+++..++++.-|+++....+.|-+|.|...+..-.++.+-+-++
T Consensus       320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~d  395 (615)
T KOG0508|consen  320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQD  395 (615)
T ss_pred             HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhhh
Confidence            6788999999999999977666667789999999999999999999999999999999999888888776655444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.83  E-value=1.3  Score=40.66  Aligned_cols=91  Identities=16%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  395 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  395 (455)
                      ....+|+--+|++..-..+++    |..+    .++...|+.+|...|+|++|.--++.++-+-     |..|   ...-
T Consensus       129 ilka~GK~l~aIk~ln~YL~~----F~~D----~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-----P~n~---l~f~  192 (289)
T KOG3060|consen  129 ILKAQGKNLEAIKELNEYLDK----FMND----QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-----PFNP---LYFQ  192 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHH----hcCc----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-----CCcH---HHHH
Confidence            345677766777655444433    2211    3567889999999999999977777665422     3333   2234


Q ss_pred             HHHHHhhhcC---CcHHHHHHHHHHHHhch
Q 012829          396 TCGKLEWFLG---DTENAIKSMTEAVEILR  422 (455)
Q Consensus       396 ~La~l~~~~g---~~~eA~~~l~~A~~i~~  422 (455)
                      .+|.+++.+|   .++-|.++|.+|+++-.
T Consensus       193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  193 RLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            4555555554   45668899999987644

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.81  E-value=0.55  Score=28.35  Aligned_cols=31  Identities=29%  Similarity=0.409  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQ  380 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  380 (455)
                      +++..++.+|...|++++|.+++++++++-+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4567899999999999999999999988653

...

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.61  E-value=0.98  Score=43.00  Aligned_cols=66  Identities=15%  Similarity=0.087  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      -.++.+||+.+.-..||+..|..-++.++.        ..+.-+-.++|||.+....|+.++|..+|..|.+..
T Consensus       394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  394 AADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             hhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            345566666666666777666665555443        445567889999999999999999999999887654

>smart00028 TPR Tetratricopeptide repeats

Probab=90.50  E-value=0.36  Score=27.75  Aligned_cols=28  Identities=29%  Similarity=0.466  Sum_probs=25.5

Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .++.+|.++...|++++|+..+++++++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            5678999999999999999999999875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=90.45  E-value=0.79  Score=37.70  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=49.9

Q ss_pred             HHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          357 KILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       357 ~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      .+....|+.+.|++.+.+++...        |..+..|++=|+.+.-+|+.++|..-|.+|+++.
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa  107 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA  107 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            34567799999999999998854        6778889999999999999999999999999854

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.34  E-value=0.93  Score=41.20  Aligned_cols=90  Identities=17%  Similarity=0.039  Sum_probs=67.4

Q ss_pred             cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh-hHHHHHHHHH
Q 012829          362 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP-FMKELILKLE  440 (455)
Q Consensus       362 ~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp-~~~~~~~~l~  440 (455)
                      ...+++|++-+..++..++ +.+..+-..|....++|=++..+|+.+....++++|++.++..+-.+.. ....-...+.
T Consensus        90 ~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            3567888888888887765 4455666899999999999999999999999999999999998765533 3333334455


Q ss_pred             HHHHHHhhhhcc
Q 012829          441 EAQAEASYKLSS  452 (455)
Q Consensus       441 ~~~~~~~~~~~~  452 (455)
                      -+.++|+.+.+.
T Consensus       169 YLigeL~rrlg~  180 (214)
T PF09986_consen  169 YLIGELNRRLGN  180 (214)
T ss_pred             HHHHHHHHHhCC
Confidence            566666665543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=90.29  E-value=1  Score=34.67  Aligned_cols=57  Identities=18%  Similarity=0.109  Sum_probs=39.5

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH---------------HhhcCCCChHHHHHHHHHHHHh
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY---------------QRVYPQFHPLLGLQYYTCGKLE  401 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~---------------~~~~g~~hp~~~~~l~~La~l~  401 (455)
                      +|.=..++..|+..+...|++++|++.+..++..-               =.++|+.||.+....-+|+.++
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL   89 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL   89 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence            44445778889999999999999999876644322               1467888998888888887765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.17  E-value=2.9  Score=39.99  Aligned_cols=89  Identities=16%  Similarity=0.096  Sum_probs=56.3

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      +...++.+.|.+.++...+     +.+ +..+.+....+...+...+.+.+|.-.++.+.+    .+|    .....++.
T Consensus       141 ~L~~~R~dlA~k~l~~~~~-----~~e-D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~----~t~~~lng  206 (290)
T PF04733_consen  141 LLKMNRPDLAEKELKNMQQ-----IDE-DSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFG----STPKLLNG  206 (290)
T ss_dssp             HHHTT-HHHHHHHHHHHHC-----CSC-CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHh-----cCC-cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccC----CCHHHHHH
Confidence            4456788888877665532     222 233444444444344444578899888777543    233    23456889


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHH
Q 012829          397 CGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      +|.++..+|+++||++.+++|++
T Consensus       207 ~A~~~l~~~~~~eAe~~L~~al~  229 (290)
T PF04733_consen  207 LAVCHLQLGHYEEAEELLEEALE  229 (290)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999863

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=89.97  E-value=6.8  Score=39.45  Aligned_cols=108  Identities=17%  Similarity=0.075  Sum_probs=67.7

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  395 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  395 (455)
                      .+...++..+|.+.+++++.+     .|+.   .-...+++++|+..|+.++|+....+.+.-    . |+.|   .-+.
T Consensus       349 i~~~~nk~~~A~e~~~kal~l-----~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~~----~-p~dp---~~w~  412 (484)
T COG4783         349 ILLEANKAKEAIERLKKALAL-----DPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLFN----D-PEDP---NGWD  412 (484)
T ss_pred             HHHHcCChHHHHHHHHHHHhc-----CCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhhc----C-CCCc---hHHH
Confidence            455667888999888888764     3443   334567999999999999998876664432    2 2333   3355


Q ss_pred             HHHHHhhhc-----------------CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          396 TCGKLEWFL-----------------GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       396 ~La~l~~~~-----------------g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      .||..|..+                 |++++|+..+.+|.+    -.|.+.|.....-..+..++
T Consensus       413 ~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~----~~~~~~~~~aR~dari~~~~  473 (484)
T COG4783         413 LLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ----QVKLGFPDWARADARIDQLR  473 (484)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----hccCCcHHHHHHHHHHHHHH
Confidence            555555554                 555555555555554    34566776666555554443

>smart00101 14_3_3 14-3-3 homologues

Probab=89.94  E-value=8.5  Score=35.66  Aligned_cols=81  Identities=14%  Similarity=0.128  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchhc---cCCCChhHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRIT---HGTNSPFMKELILKLEE  441 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~~---~G~~hp~~~~~~~~l~~  441 (455)
                      +.|.+.|+.++++...-+||.||.+.-...|.+..++ -+++.++|..+-++|.+-....   +..++  +++....++-
T Consensus       145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~--y~dstlImqL  222 (244)
T smart00101      145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEES--YKDSTLIMQL  222 (244)
T ss_pred             HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhh--hHHHHHHHHH
Confidence            5788889999998888899999986555555555554 5689999887766555433222   23333  5666666666


Q ss_pred             HHHHHhh
Q 012829          442 AQAEASY  448 (455)
Q Consensus       442 ~~~~~~~  448 (455)
                      ++..+.-
T Consensus       223 LrDNL~l  229 (244)
T smart00101      223 LRDNLTL  229 (244)
T ss_pred             HHHHHHh
Confidence            6665543

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.85  E-value=6.8  Score=36.03  Aligned_cols=82  Identities=13%  Similarity=0.069  Sum_probs=58.5

Q ss_pred             cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      |.|+-..-...+...+..|....+|++|..-++++.+.+|.--..+|.  +.++-..|.+.-...++.|++.++++|...
T Consensus        23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA--AKayEqaamLake~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA--AKAYEQAAMLAKELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            444444445556666778888899999988888888888876666665  455666677777777777777777777766


Q ss_pred             chhc
Q 012829          421 LRIT  424 (455)
Q Consensus       421 ~~~~  424 (455)
                      +...
T Consensus       101 Y~E~  104 (308)
T KOG1585|consen  101 YVEC  104 (308)
T ss_pred             HHHh
Confidence            6544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.75  E-value=0.38  Score=47.51  Aligned_cols=115  Identities=17%  Similarity=0.214  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH------H-hhcccCCc--cc-cHHHHHHHHHHHHHhcccHHH
Q 012829          298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEK------L-QKKLYHPF--SV-NLMQTREKLIKILMELEDWKE  367 (455)
Q Consensus       298 ~~~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~------~-~~~~l~~~--~~-~~~~~~~~L~~~~~~~g~~~~  367 (455)
                      +..+.+..++..+.++....-+.|++.+|++-.+.+-+      . +++.--|.  |. .+..++.+|++-|-..     
T Consensus       140 ek~kqle~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~n-----  214 (840)
T KOG2003|consen  140 EKCKQLEKEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEAN-----  214 (840)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhh-----
Confidence            45677777888888877777777888888765433221      1 22222222  22 2234556666655444     


Q ss_pred             HHHHHHHhhhhHHhhcC-CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          368 ALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       368 A~~~~~~~l~~~~~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                        ++...++..|+.+.- ...|.-|...+++|.+++...++.+|+++|+-|++
T Consensus       215 --dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald  265 (840)
T KOG2003|consen  215 --DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD  265 (840)
T ss_pred             --HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh
Confidence              444444555554443 56677788888889999999999999998888775

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.74  E-value=1.2  Score=43.38  Aligned_cols=81  Identities=22%  Similarity=0.208  Sum_probs=61.8

Q ss_pred             CCCHHHHHHHHhhhhccccccc----------cCCCCcceeeecccccccCCCCC-CCcEEEEeCCEEEEEEecccCCCC
Q 012829          147 EISINEIAENFSKLACNAHTIC----------NSELRPLGTGLYPVISIINHSCL-PNAVLVFEGRLAVVRAVQHVPKGA  215 (455)
Q Consensus       147 ~~~~~~i~~~~~~~~~N~~~i~----------~~~~~~~g~~lyp~~s~~NHSC~-PN~~~~~~~~~~~v~a~r~I~~Ge  215 (455)
                      .++.+.++.+.+.+..-+|.+-          +.+-.+.|-..-|.+-++||.=. -|+...++++-+.++|.|+|++|+
T Consensus       173 ~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgd  252 (466)
T KOG1338|consen  173 RPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGD  252 (466)
T ss_pred             ccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcc
Confidence            4667777777666555555441          12335678889999999999766 677778889999999999999999


Q ss_pred             eeEEeecCCCCC
Q 012829          216 EVLISYIETAGS  227 (455)
Q Consensus       216 Ei~isY~~~~~~  227 (455)
                      |+..+|+-..+.
T Consensus       253 ev~n~dg~~p~~  264 (466)
T KOG1338|consen  253 EVDNSDGLKPMG  264 (466)
T ss_pred             ccccccccCcch
Confidence            999999754443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.71  E-value=2.2  Score=35.82  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      +..-+...+..|+|++|.+.++.+..-    || ..|........||-+++..|++++|+..+++=++     +-|.||.
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~r----yP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir-----LhP~hp~   82 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTR----YP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR-----LHPTHPN   82 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhc----CC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCC
Confidence            445566677889999998887765553    33 3333446688899999999999999998877665     3477876


Q ss_pred             HHH
Q 012829          432 MKE  434 (455)
Q Consensus       432 ~~~  434 (455)
                      +--
T Consensus        83 vdY   85 (142)
T PF13512_consen   83 VDY   85 (142)
T ss_pred             ccH
Confidence            533

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=89.58  E-value=2.7  Score=44.44  Aligned_cols=91  Identities=21%  Similarity=0.252  Sum_probs=64.9

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHH--HHHHhhhhHHhhcCCCChHHHH
Q 012829          315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALA--YCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~--~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .....+|.+.+|.+.|..++.     +.|+|+..+.   .|+.++...|+-..|..  +...++.     +++..|   -
T Consensus       692 ~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~~---Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~---e  755 (799)
T KOG4162|consen  692 LLLEVKGQLEEAKEAFLVALA-----LDPDHVPSMT---ALAELLLELGSPRLAEKRSLLSDALR-----LDPLNH---E  755 (799)
T ss_pred             HHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHHH---HHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCH---H
Confidence            334455677777777666654     5677876654   57888888886655555  6666554     344444   4


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      .++.||++...+|+.++|...|+-|++.-
T Consensus       756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  756 AWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            58999999999999999999999998753

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=89.53  E-value=0.31  Score=34.08  Aligned_cols=28  Identities=18%  Similarity=0.370  Sum_probs=21.0

Q ss_pred             CccCccccCcCCCcCCCCCCccccCCHHHhHhhhh
Q 012829           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWK   61 (455)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~   61 (455)
                      ..+|-+|+++.++-       -.|||++|++..++
T Consensus         3 HkHC~~CG~~Ip~~-------~~fCS~~C~~~~~k   30 (59)
T PF09889_consen    3 HKHCPVCGKPIPPD-------ESFCSPKCREEYRK   30 (59)
T ss_pred             CCcCCcCCCcCCcc-------hhhhCHHHHHHHHH
Confidence            47899999886532       35999999987544

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.49  E-value=3.8  Score=34.01  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829          347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  425 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~  425 (455)
                      ...++..+++.++....+-.+    -++-+.+++.+++..||. .-..+|-||.-++.+++|+++..++..-++     .
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~-----~  100 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE-----T  100 (149)
T ss_pred             chHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh-----h
Confidence            345667778887776655322    245567778888878885 356677889999999999999999887766     3


Q ss_pred             CCCChhHHHHHHHHHHHHH
Q 012829          426 GTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       426 G~~hp~~~~~~~~l~~~~~  444 (455)
                      -|+.+...++.+.+++...
T Consensus       101 e~~n~Qa~~Lk~~ied~it  119 (149)
T KOG3364|consen  101 EPNNRQALELKETIEDKIT  119 (149)
T ss_pred             CCCcHHHHHHHHHHHHHHh
Confidence            5788888999888887654

>PLN03077 Protein ECB2; Provisional

Probab=89.30  E-value=8.5  Score=42.90  Aligned_cols=125  Identities=14%  Similarity=0.122  Sum_probs=71.5

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhh------------hhH-----
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI------------PVY-----  379 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l------------~~~-----  379 (455)
                      ....|.++++..+++......  -..|    -..++..+...+.+.|++++|.++.+++-            ..+     
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~--gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~  672 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKY--SITP----NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH  672 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHh--CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence            334566666666665554221  0111    12445556666666677666666655530            000     


Q ss_pred             --------HhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh-chh----------------ccC-CCChhHH
Q 012829          380 --------QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI-LRI----------------THG-TNSPFMK  433 (455)
Q Consensus       380 --------~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i-~~~----------------~~G-~~hp~~~  433 (455)
                              ++++. -.|.-+..+..|+.+|...|++++|.+..+.-.+. +++                .-| ..||.+.
T Consensus       673 ~e~~e~~a~~l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~  751 (857)
T PLN03077        673 VELGELAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK  751 (857)
T ss_pred             hHHHHHHHHHHHh-hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence                    00000 11222234667788999999999999876654421 111                112 4599999


Q ss_pred             HHHHHHHHHHHHHhh
Q 012829          434 ELILKLEEAQAEASY  448 (455)
Q Consensus       434 ~~~~~l~~~~~~~~~  448 (455)
                      ++..+|+++..++..
T Consensus       752 ~i~~~l~~l~~~~~~  766 (857)
T PLN03077        752 EINTVLEGFYEKMKA  766 (857)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887763

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=89.08  E-value=0.68  Score=27.54  Aligned_cols=29  Identities=31%  Similarity=0.471  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVY  379 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  379 (455)
                      ++..++.++...|++++|..++++++.-+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            56789999999999999999999887744

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=88.91  E-value=5.2  Score=41.04  Aligned_cols=74  Identities=19%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCCChhHHHHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~hp~~~~~~~~l~~~~~  444 (455)
                      ..+++++.+++...+++|+..|.   .-|.-+|.-++..+++.+|+..+.+|.++++.. |+.+..   ++...+-++.+
T Consensus       296 ~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDe---EiYKEfleIAn  369 (618)
T PF05053_consen  296 PTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDE---EIYKEFLEIAN  369 (618)
T ss_dssp             --HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGH---HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHH---HHHHHHHHHHH
Confidence            56899999999999999996664   446667888999999999999999999888776 765542   34444444433


Q ss_pred             H
Q 012829          445 E  445 (455)
Q Consensus       445 ~  445 (455)
                      +
T Consensus       370 e  370 (618)
T PF05053_consen  370 E  370 (618)
T ss_dssp             T
T ss_pred             H
Confidence            3

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=88.85  E-value=2.2  Score=29.20  Aligned_cols=46  Identities=20%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      .+|-||..+..+|+|++|..+...++++     -|+.+...++...+++-.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHH
Confidence            3678899999999999999998888873     488888888877777654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.70  E-value=0.28  Score=30.14  Aligned_cols=25  Identities=32%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAI  411 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~  411 (455)
                      +|.-...+++||.++...|++++|+
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3555577999999999999999996

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.62  E-value=9.2  Score=35.63  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=67.5

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829          322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  401 (455)
Q Consensus       322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~  401 (455)
                      +..+|.-+|+....+    +    +.+..+....+.+.+.+|+|++|..+.+.+|+-.-     ..|.+   +-|+-.+.
T Consensus       188 k~qdAfyifeE~s~k----~----~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~dpet---L~Nliv~a  251 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEK----T----PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KDPET---LANLIVLA  251 (299)
T ss_pred             hhhhHHHHHHHHhcc----c----CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CCHHH---HHHHHHHH
Confidence            567777777766543    2    23345566788899999999999999888877432     33555   66676777


Q ss_pred             hhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829          402 WFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  441 (455)
Q Consensus       402 ~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~  441 (455)
                      ..+|+-.++..-+-.-+    +..-|+||+++++.++=++
T Consensus       252 ~~~Gkd~~~~~r~l~QL----k~~~p~h~~vk~~~ekeae  287 (299)
T KOG3081|consen  252 LHLGKDAEVTERNLSQL----KLSHPEHPFVKHLNEKEAE  287 (299)
T ss_pred             HHhCCChHHHHHHHHHH----HhcCCcchHHHHHHHHHHH
Confidence            78888877654322222    2346999999988765444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=88.21  E-value=2.6  Score=45.06  Aligned_cols=74  Identities=22%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829          318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  397 (455)
Q Consensus       318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  397 (455)
                      ...|-.++|+.+|+++.+                ++-|-..|..+|.|.+|++..+.          .+-..+-..||+-
T Consensus       811 ieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~y  864 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNY  864 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHH
Confidence            445666777777777643                22234567889999999887543          2223445678888


Q ss_pred             HHHhhhcCCcHHHHHHHHHH
Q 012829          398 GKLEWFLGDTENAIKSMTEA  417 (455)
Q Consensus       398 a~l~~~~g~~~eA~~~l~~A  417 (455)
                      |+-+...++.+.|+++|+++
T Consensus       865 A~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  865 AKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHHHhhccHHHHHHHHHhc
Confidence            99888999999999999885

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.17  E-value=0.69  Score=28.34  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=21.0

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHH
Q 012829          345 SVNLMQTREKLIKILMELEDWKEAL  369 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~  369 (455)
                      +|.-..++.+|+.+|...|++++|.
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            4555667899999999999999986

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=87.84  E-value=2.1  Score=33.00  Aligned_cols=51  Identities=25%  Similarity=0.305  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHH----------------HhchhccCCCChhHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAV----------------EILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~----------------~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      .-..+.+|..+...|++++|++.|-+.+                ++++ .+|+.||.+....++|..+
T Consensus        22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~-~lg~~~plv~~~RRkL~~l   88 (90)
T PF14561_consen   22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFE-LLGPGDPLVSEYRRKLASL   88 (90)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHH-HH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHH-HcCCCChHHHHHHHHHHHH
Confidence            3668899999999999999999877644                3332 4689999999988888754

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=87.80  E-value=4  Score=43.23  Aligned_cols=78  Identities=13%  Similarity=0.031  Sum_probs=59.2

Q ss_pred             cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ++|+|+   .+...|+.-|..+++.+.|++++++++..    -|.+|+.   .+.-||.+.-..+++.+|++...-|++-
T Consensus       473 ~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~---~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  473 FDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAK---AWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             cCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHH---HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            567777   45677888899999999999999998883    3566653   3555677888999999999998888875


Q ss_pred             chhccCCC
Q 012829          421 LRITHGTN  428 (455)
Q Consensus       421 ~~~~~G~~  428 (455)
                      ...-||-.
T Consensus       543 ~~~N~~l~  550 (799)
T KOG4162|consen  543 FGDNHVLM  550 (799)
T ss_pred             hhhhhhhc
Confidence            55544433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.69  E-value=0.56  Score=26.71  Aligned_cols=25  Identities=12%  Similarity=0.106  Sum_probs=21.4

Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTE  416 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~  416 (455)
                      ...+.||.++..+|+.++|+..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            3567899999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PLN03218 maturation of RBCL 1; Provisional

Probab=87.05  E-value=8.3  Score=43.83  Aligned_cols=90  Identities=12%  Similarity=0.030  Sum_probs=45.4

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  395 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  395 (455)
                      .+...|++++|..++......   -+.|+    ..++..|+..|...|++++|.+++..+...-.   | .-|. ...+.
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~---Gv~PD----~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~---g-i~PD-~vTyn  583 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSK---NVKPD----RVVFNALISACGQSGAVDRAFDVLAEMKAETH---P-IDPD-HITVG  583 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC---C-CCCc-HHHHH
Confidence            345567777777776655432   12222    23455566666666777777666665543210   0 0111 12344


Q ss_pred             HHHHHhhhcCCcHHHHHHHHHH
Q 012829          396 TCGKLEWFLGDTENAIKSMTEA  417 (455)
Q Consensus       396 ~La~l~~~~g~~~eA~~~l~~A  417 (455)
                      .|...+...|++++|.+++++.
T Consensus       584 aLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        584 ALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH
Confidence            4444455555555555555443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=86.80  E-value=4.3  Score=40.52  Aligned_cols=92  Identities=12%  Similarity=0.028  Sum_probs=67.8

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829          319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  398 (455)
Q Consensus       319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  398 (455)
                      ..++++.|+.+++++.+.        ++.   ....|+.++...++-.+|+++..+++.        .+|.-+..+...|
T Consensus       181 ~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~~LL~~Qa  241 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDSELLNLQA  241 (395)
T ss_pred             hcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCHHHHHHHH
Confidence            346788999888776543        122   223478888888888899999888883        2333367777889


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829          399 KLEWFLGDTENAIKSMTEAVEILRITHGTNS  429 (455)
Q Consensus       399 ~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  429 (455)
                      ..+...++++.|++..++|..+.=-.+....
T Consensus       242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~  272 (395)
T PF09295_consen  242 EFLLSKKKYELALEIAKKAVELSPSEFETWY  272 (395)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCchhHHHHH
Confidence            9999999999999999999987655554444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=86.62  E-value=7  Score=38.32  Aligned_cols=69  Identities=17%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             cCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          341 YHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       341 l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .||+++   .....|+..|...+.|.+|..+++.++...     +.    +..+..+|.++..+|+..+|....++++..
T Consensus       323 ~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-----~s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         323 QHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLR-----PS----ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            455556   445568888999999999999988776622     11    345777899999999999999999999843


Q ss_pred             c
Q 012829          421 L  421 (455)
Q Consensus       421 ~  421 (455)
                      .
T Consensus       391 ~  391 (400)
T COG3071         391 T  391 (400)
T ss_pred             h
Confidence            3

>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]

Probab=86.38  E-value=0.33  Score=49.44  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             cceeeeccccc-ccCCCCCCCcEEEE----eCCEEEEEEecccCCCCeeEEeecCC
Q 012829          174 PLGTGLYPVIS-IINHSCLPNAVLVF----EGRLAVVRAVQHVPKGAEVLISYIET  224 (455)
Q Consensus       174 ~~g~~lyp~~s-~~NHSC~PN~~~~~----~~~~~~v~a~r~I~~GeEi~isY~~~  224 (455)
                      .+-.+.+...| +.||||.||+.-.-    ......+.|.+.|+.|+|+|.+|.-.
T Consensus       362 ~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~  417 (463)
T KOG1081|consen  362 IIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN  417 (463)
T ss_pred             ccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence            44456666655 77999999998642    23457789999999999999999654

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=86.14  E-value=17  Score=36.24  Aligned_cols=113  Identities=15%  Similarity=0.069  Sum_probs=68.9

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHH--HhcccHHHHHHHHHHhhhhHHh------
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKIL--MELEDWKEALAYCQLTIPVYQR------  381 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~--~~~g~~~~A~~~~~~~l~~~~~------  381 (455)
                      .++.+..++..++|..|..++..+...    +++...  .+.+..|+..|  .+.-++++|.++++..+.....      
T Consensus       134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~  207 (379)
T PF09670_consen  134 EWRRAKELFNRYDYGAAARILEELLRR----LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQERE  207 (379)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHH
Confidence            345566677889999999998887653    333333  45566666666  4677888998888765542111      


Q ss_pred             --------------hcC------C--C--ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh----ccCCC
Q 012829          382 --------------VYP------Q--F--HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI----THGTN  428 (455)
Q Consensus       382 --------------~~g------~--~--hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~----~~G~~  428 (455)
                                    +.+      .  .  .+.+...++.-|.=-...|+|+.|+..+=+|++.+-.    .||-+
T Consensus       208 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~  282 (379)
T PF09670_consen  208 GLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGID  282 (379)
T ss_pred             HHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence                          111      0  0  1223333333344444579999999988888765432    56644

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.00  E-value=1.9  Score=28.24  Aligned_cols=41  Identities=20%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          394 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       394 l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      .+.||..|...|+.+.|.+.|++.+.      +.+-+.-.+...+|+
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~------~~~~~q~~eA~~LL~   42 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE------EGDEAQRQEARALLA   42 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH------cCCHHHHHHHHHHHh
Confidence            36789999999999999999998885      333444445555444

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.00  E-value=9.8  Score=29.38  Aligned_cols=81  Identities=14%  Similarity=0.069  Sum_probs=55.1

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCc-cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          318 TSCGNHQEVVSTYKMIEKLQKKLYHPF-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~-~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      ...|++.+|++.+.+............ +.....+.-+++.+....|++++|+...+.++.+.+..-  +...++..+.-
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~~   86 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALSW   86 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHH
Confidence            356789999888777766544433333 223444566788899999999999999999999887543  34444555554


Q ss_pred             HHHH
Q 012829          397 CGKL  400 (455)
Q Consensus       397 La~l  400 (455)
                      ++.+
T Consensus        87 ~~~l   90 (94)
T PF12862_consen   87 LANL   90 (94)
T ss_pred             HHHH
Confidence            4443

>PLN03218 maturation of RBCL 1; Provisional

Probab=86.00  E-value=15  Score=41.85  Aligned_cols=90  Identities=12%  Similarity=-0.020  Sum_probs=53.2

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      +...|++++|.+++......... +.|+    ..++..|+..|.+.|++++|.++++.+...   -. +..   ...+..
T Consensus       552 ~~k~G~~deA~~lf~eM~~~~~g-i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~---gi-~p~---~~tyns  619 (1060)
T PLN03218        552 CGQSGAVDRAFDVLAEMKAETHP-IDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY---NI-KGT---PEVYTI  619 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHhcCC-CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CC-CCC---hHHHHH
Confidence            44557788888877766542111 2222    245566777888888888888877765441   01 111   134555


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHH
Q 012829          397 CGKLEWFLGDTENAIKSMTEAV  418 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~  418 (455)
                      +...+...|++++|.+++.+..
T Consensus       620 LI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        620 AVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Confidence            5666666677777776666544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=85.96  E-value=4  Score=44.93  Aligned_cols=63  Identities=13%  Similarity=-0.026  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      ++..||.+|-.+|++++|.+.+++++..-     +.+   +..++++|-.+... ++++|+.++.+|+..+-
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n---~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDN---PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-----ccc---HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            66778888999999999999888887743     444   45588888888888 99999999999887643

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=85.84  E-value=12  Score=41.49  Aligned_cols=102  Identities=10%  Similarity=-0.084  Sum_probs=66.6

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh------------h
Q 012829          315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR------------V  382 (455)
Q Consensus       315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~------------~  382 (455)
                      ..+...+++++++.+++..++.        +|..+..+.-++.++...+++.+|..+  .++.+...            .
T Consensus        39 ~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~  108 (906)
T PRK14720         39 DAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDK  108 (906)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHH
Confidence            3344678999999888766542        444455556666677777776666554  22222110            1


Q ss_pred             cCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          383 YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       383 ~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                      .+ .++.--.+++.||..|-.+|+.++|...|++++++=     |+++.+
T Consensus       109 i~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-----~~n~~a  152 (906)
T PRK14720        109 IL-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-----RDNPEI  152 (906)
T ss_pred             HH-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----cccHHH
Confidence            11 123333588999999999999999999999999854     666643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=85.54  E-value=4.3  Score=40.06  Aligned_cols=95  Identities=13%  Similarity=0.117  Sum_probs=66.2

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHH---------HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR---------EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~---------~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      .++..++.+.++..+++.+.     ++|.|...-.+.         ..=+.-..+.|+|..|.+.+..+|.+-     |.
T Consensus       212 ~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-----P~  281 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-----PS  281 (486)
T ss_pred             ccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-----cc
Confidence            34455567777777777765     456655444332         222333456789999999999888843     33


Q ss_pred             Ch-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          387 HP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       387 hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      |. -.+..|.+.|.+...+|+..+|+.-...|+.|
T Consensus       282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i  316 (486)
T KOG0550|consen  282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI  316 (486)
T ss_pred             ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence            44 45788889999999999999999887777765

>PLN02789 farnesyltranstransferase

Probab=85.40  E-value=16  Score=35.50  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhhHHhhcCCCC----------
Q 012829          319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFH----------  387 (455)
Q Consensus       319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~~g~~h----------  387 (455)
                      ..+.+++|+.++.+++.+     .|.|+.   +...-+.++..+| ++++|++++.+++....+-+..+|          
T Consensus        49 ~~e~serAL~lt~~aI~l-----nP~~yt---aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         49 SDERSPRALDLTADVIRL-----NPGNYT---VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             cCCCCHHHHHHHHHHHHH-----CchhHH---HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence            455777888877777654     233332   3333334444455 467777776666553322222111          


Q ss_pred             ------------------hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          388 ------------------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       388 ------------------p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                                        |.--..+...+-++..+|++++|+..+.+++++
T Consensus       121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence                              111122333345555667777777777777664

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.33  E-value=4.7  Score=37.96  Aligned_cols=72  Identities=22%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  429 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  429 (455)
                      ......+..|...|.+.+|..++++++.        .||.--.....|-.++..+|+--+|.+++.+-.+.+++.+|-+-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~lt--------ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALT--------LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhh--------cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            3445567788899999999999999887        56766667777778899999999999999999999999999763

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=85.11  E-value=19  Score=36.59  Aligned_cols=63  Identities=11%  Similarity=0.019  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829          348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  416 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~  416 (455)
                      ...++..|+....++|+.++|+++.+.++..    +|..  ......++|...+..+++|.++...|.+
T Consensus       258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke----~p~~--~~l~IrenLie~LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKE----FPNL--DNLNIRENLIEALLELQAYADVQALLAK  320 (539)
T ss_pred             hhhhHHHHHHHHHHhCChHHHHHHHHHHHhh----CCcc--chhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3556778999999999999999999887753    2321  1234577888888999999988887766

The molecular function of this protein is uncertain.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.07  E-value=12  Score=40.67  Aligned_cols=110  Identities=16%  Similarity=0.108  Sum_probs=76.2

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh-
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-  388 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp-  388 (455)
                      .-.|+...++.++++|..+..++.......-+...- ..+....--+.+....|+.++|+++.+.++.    -+|++++ 
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~----~L~~~~~~  494 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV----QLPEAAYR  494 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcccccch
Confidence            345777778889999988877665432211111111 1122222234556778999999999998776    4555555 


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      .....+..+|.+.+-.|++++|..+.++|.++.+..
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~  530 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH  530 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence            456788899999999999999999999999887664

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.04  E-value=5.6  Score=29.55  Aligned_cols=53  Identities=19%  Similarity=0.051  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh--ccCCCChhHHH-HHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI--THGTNSPFMKE-LILKLEEA  442 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~--~~G~~hp~~~~-~~~~l~~~  442 (455)
                      .|..+...|.-.-..|++++|..+|++|++.+..  .+|...|..++ +..++.+-
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eY   60 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEY   60 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            3566777788888999999999999999999988  45533333343 34444433

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=84.90  E-value=3.4  Score=42.82  Aligned_cols=63  Identities=30%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829          348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV  418 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~  418 (455)
                      ++.+..-|++.|-..|++++|+++..++|+.        .|...-.++.-|+++-..|++.+|...+.+|.
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar  255 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAR  255 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4577888999999999999999999999884        35555668888999999999999998877664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=84.77  E-value=29  Score=34.30  Aligned_cols=82  Identities=15%  Similarity=0.286  Sum_probs=58.0

Q ss_pred             CHHHHHHHHH----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC---------------------ccccHHH
Q 012829          296 SKEEIKKIAS----EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---------------------FSVNLMQ  350 (455)
Q Consensus       296 ~~~~~~~~~~----e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~---------------------~~~~~~~  350 (455)
                      +++.+..++.    .+.++...+.....+|+++.|.++.++++-..+..+|+                     .|.....
T Consensus        25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl  104 (360)
T PF04910_consen   25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL  104 (360)
T ss_pred             CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence            3444444443    36677778888889999999999988887654433332                     3555566


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIP  377 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~  377 (455)
                      +...-+......|-|.-|+++++-++.
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLls  131 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLS  131 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            677777788889999999999887544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=84.42  E-value=0.56  Score=46.57  Aligned_cols=71  Identities=6%  Similarity=0.099  Sum_probs=59.3

Q ss_pred             HHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh
Q 012829          332 MIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW  402 (455)
Q Consensus       332 ~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~  402 (455)
                      +++-+++++++|+|+++.-...--+.+|.++|+++.++++...+++...+.+-|-+|.++..+...|.+..
T Consensus       320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS  390 (615)
T KOG0508|consen  320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS  390 (615)
T ss_pred             HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence            45567788999999887654434455789999999999999999999999999999999999988887754

>PRK10941 hypothetical protein; Provisional

Probab=83.54  E-value=15  Score=34.71  Aligned_cols=85  Identities=15%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCC
Q 012829          348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  427 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~  427 (455)
                      +.+...+|-.+|+..++|+.|+...+.++.     +.|++|.   ....-|.+|..+|.+..|..-|+.-++     +=|
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~-----l~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~-----~~P  246 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQ-----FDPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVE-----QCP  246 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHH-----hCC
Confidence            345677888899999999999999888776     4566663   344557788899999999887777665     347


Q ss_pred             CChhHHHHHHHHHHHHHH
Q 012829          428 NSPFMKELILKLEEAQAE  445 (455)
Q Consensus       428 ~hp~~~~~~~~l~~~~~~  445 (455)
                      +.|...-+...++.++.+
T Consensus       247 ~dp~a~~ik~ql~~l~~~  264 (269)
T PRK10941        247 EDPISEMIRAQIHSIEQK  264 (269)
T ss_pred             CchhHHHHHHHHHHHhhc
Confidence            788777777777777654

>PRK11906 transcriptional regulator; Provisional

Probab=83.38  E-value=6.7  Score=39.52  Aligned_cols=61  Identities=10%  Similarity=-0.036  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ++..++.+....|+++.|...+++++..        +|..+..++-.|.+....|+.++|...+++|++
T Consensus       340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        340 ILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            4555777778888899999999998873        366677789999999999999999999998764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.34  E-value=27  Score=31.05  Aligned_cols=60  Identities=15%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTE  416 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~  416 (455)
                      .-.++..+.+.|++++|...++.++.     ++.+.-..++.-.+||.++..+|++++|.+.|..
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALA-----QTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHc-----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            34688889999999999999888775     5567777788899999999999999999887654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.32  E-value=9.8  Score=28.13  Aligned_cols=56  Identities=20%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc--cCCCChhHHHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~--~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      .|..+...|.-+-..|++++|+.+|++|++.+...  .-||++.-.-...++.+-..+
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R   62 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR   62 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            35566677778889999999999999999988776  336676554455555554443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3612 consensus PHD Zn-finger protein [General function prediction only]

Probab=81.78  E-value=0.37  Score=48.52  Aligned_cols=43  Identities=26%  Similarity=0.608  Sum_probs=31.9

Q ss_pred             CCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhh
Q 012829           26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS   71 (455)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~   71 (455)
                      +.+-|.+|....-+.-   |=...|||-+||+..|..|+--|..-+
T Consensus       526 kKQWC~nC~~EAiy~C---CWNTSYCsveCQQ~HW~~H~ksCrrk~  568 (588)
T KOG3612|consen  526 KKQWCYNCLDEAIYHC---CWNTSYCSVECQQGHWPEHRKSCRRKK  568 (588)
T ss_pred             HHHHHHhhhHHHHHHh---hccccccCcchhhccchhHhhhhcccC
Confidence            3566888888743332   233569999999999999999998543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.42  E-value=5  Score=38.78  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=57.8

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  395 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  395 (455)
                      .+.+..+|..|+.+++-.+...       .-.--.+...++..+...|+|++|+..+.-+.+       .+.|. +-.-.
T Consensus        31 dfls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~~~-~el~v   95 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDDAP-AELGV   95 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCCCC-cccch
Confidence            3456778888888766554321       111123445688899999999999988766544       22221 23345


Q ss_pred             HHHHHhhhcCCcHHHHHHHHHH
Q 012829          396 TCGKLEWFLGDTENAIKSMTEA  417 (455)
Q Consensus       396 ~La~l~~~~g~~~eA~~~l~~A  417 (455)
                      +||..++.+|.|.||.....+|
T Consensus        96 nLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   96 NLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhC
Confidence            7888899999999998876554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.30  E-value=28  Score=31.97  Aligned_cols=55  Identities=20%  Similarity=0.146  Sum_probs=26.2

Q ss_pred             cHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc-CCcHHHHHHHHHHHHh
Q 012829          364 DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-GDTENAIKSMTEAVEI  420 (455)
Q Consensus       364 ~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~-g~~~eA~~~l~~A~~i  420 (455)
                      +-.+|+..+.++++||...-.  ...-+.....+|.+|..- -++++|+.+|++|.+-
T Consensus        88 ~~~eAv~cL~~aieIyt~~Gr--f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   88 DPEEAVNCLEKAIEIYTDMGR--FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             ChHHHHHHHHHHHHHHHhhhH--HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            555666666666665543211  111233344445554432 4555555555555543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=81.27  E-value=14  Score=40.03  Aligned_cols=84  Identities=10%  Similarity=0.013  Sum_probs=43.3

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      +...|++++|..++....        +.+   ..+++.|+..|...|++++|+++++++...   -..++    ...+..
T Consensus       269 y~k~g~~~~A~~vf~~m~--------~~~---~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~~pd----~~t~~~  330 (697)
T PLN03081        269 YSKCGDIEDARCVFDGMP--------EKT---TVAWNSMLAGYALHGYSEEALCLYYEMRDS---GVSID----QFTFSI  330 (697)
T ss_pred             HHHCCCHHHHHHHHHhCC--------CCC---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHH
Confidence            334566666666554331        111   234556666677777777777766655331   01111    124455


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHH
Q 012829          397 CGKLEWFLGDTENAIKSMTEAV  418 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~  418 (455)
                      +...+...|++++|...+.+++
T Consensus       331 ll~a~~~~g~~~~a~~i~~~m~  352 (697)
T PLN03081        331 MIRIFSRLALLEHAKQAHAGLI  352 (697)
T ss_pred             HHHHHHhccchHHHHHHHHHHH
Confidence            5555556666666665555444

>PLN02789 farnesyltranstransferase

Probab=81.27  E-value=16  Score=35.40  Aligned_cols=48  Identities=13%  Similarity=0.120  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL  404 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~  404 (455)
                      .++..+.+.++...|+|++|++++.++|+.        +|.-...++..+.+....
T Consensus       142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhc
Confidence            345555666667778888888888888774        122234566666666555

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=80.91  E-value=16  Score=32.10  Aligned_cols=72  Identities=17%  Similarity=0.113  Sum_probs=56.2

Q ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      .+-.++..++.-|...||+++|++.+.++.+   ..-++.|  +....+++-.+....+++..+.+++.+|..+++.
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~---~~~~~~~--~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~  105 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARD---YCTSPGH--KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK  105 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh---hcCCHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence            3445677899999999999999999888544   2333333  3455667777888899999999999999998888

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.83  E-value=2.9  Score=23.68  Aligned_cols=23  Identities=26%  Similarity=0.211  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQ  373 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~  373 (455)
                      ++..|+.++...|++++|..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45678999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5

Probab=80.48  E-value=3.9  Score=36.07  Aligned_cols=47  Identities=13%  Similarity=0.158  Sum_probs=40.2

Q ss_pred             ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          344 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       344 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ..+..++++.+|..-|..+|++.-|+..|+.+++-..+..|..||.+
T Consensus       135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v  181 (181)
T PF09311_consen  135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV  181 (181)
T ss_dssp             TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence            35667788899999999999999999999999999999999999975

This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=80.31  E-value=0.92  Score=29.49  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             ccCccccCcCCCcCCCCCCccccCCHHHhHhhhh
Q 012829           28 SRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWK   61 (455)
Q Consensus        28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~   61 (455)
                      .+|-.|-+....    .-....|||++|+..|+.
T Consensus         7 ~yC~~Cdk~~~~----~~~~~lYCSe~Cr~~D~~   36 (43)
T PF12855_consen    7 DYCIVCDKQIDP----PDDGSLYCSEECRLKDQE   36 (43)
T ss_pred             hHHHHhhccccC----CCCCccccCHHHHhHhhh
Confidence            456666654211    124457999999998864

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=80.15  E-value=5.4  Score=40.10  Aligned_cols=114  Identities=17%  Similarity=0.174  Sum_probs=80.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +-++|..++...+|+.|+.+|.+++++     +|+...+..-+   +.++...++|..|+.-+.++++        ..|.
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~l-----dpnca~~~anR---a~a~lK~e~~~~Al~Da~kaie--------~dP~   70 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIEL-----DPNCAIYFANR---ALAHLKVESFGGALHDALKAIE--------LDPT   70 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhc-----CCcceeeechh---hhhheeechhhhHHHHHHhhhh--------cCch
Confidence            345566667778999999999999874     45544433322   2567888999999988888777        3487


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~  444 (455)
                      ....|+.=|...+.++++.+|...|++...+     -|+-|..+.....-+.+.+
T Consensus        71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l-----~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKL-----APNDPDATRKIDECNKIVS  120 (476)
T ss_pred             hhheeeeccHHHHhHHHHHHHHHHHHHhhhc-----CcCcHHHHHHHHHHHHHHH
Confidence            7788888888899999999999988877653     3666655444444444433

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=80.09  E-value=13  Score=34.49  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                      ..........+|.-|...|++++|.++|+.+...++..  ....+..+++.+|.++..++.
T Consensus       174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhC
Confidence            55667778899999999999999999999997666654  456677888888888766554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	455
3qwv_A	433	Crystal Structure Of Histone Lysine Methyltransfera		5e-40
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		1e-37
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		8e-37
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		8e-37
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		2e-34
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		3e-34
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		3e-34
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		3e-34
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		3e-34
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		7e-33
3n71_A	490	Crystal Structure Of Cardiac Specific Histone Methy		3e-27

>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433

Iteration: 1
 Score =  162 bits (409), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 197/442 (44%), Gaps = 42/442 (9%)
Query: 4   FHVSGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKL 62
           FHV G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW L
Sbjct: 27  FHV-GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPL 85
Query: 63  HRLECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMS 122
           H+LEC  +  L +    S T  +            +       T ++    V    +H+ 
Sbjct: 86  HKLECSSMVVLGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVREFESHLD 139
Query: 123 DID-EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTG 178
            +D EK+ L+ + IA L       L++P+ S   +   F+++ CN  TI + EL  LG+ 
Sbjct: 140 KLDNEKKDLIQSDIAALHQFYSKYLEFPDHS--SLVVLFAQVNCNGFTIEDEELSHLGSA 197
Query: 179 LYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ 238
           ++P ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ 
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDS 257
Query: 239 YLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKE 298
           Y FTC C  C                              +D D      ++       E
Sbjct: 258 YFFTCECRECTT----------------------------KDKDKAKVEVRKLSSPPQAE 289
Query: 299 EIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI 358
            I+ +      + ++        +  E++   ++ ++    ++   +V ++    + + +
Sbjct: 290 AIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGV 349
Query: 359 LMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAV 418
            + ++DW+ AL Y Q  I  Y + YP +   +   +   G+L   L +     K++ +A+
Sbjct: 350 CLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409
Query: 419 EILRITHGTNSPFMKELILKLE 440
            I+ + HG + P++ E+  ++E
Sbjct: 410 AIMEVAHGKDHPYISEIKQEIE 431

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 191/436 (43%), Gaps = 37/436 (8%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +            +       T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLILQWPEISINE-IAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L +   +  E   N+ +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203
Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
           ++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FTC 
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263
Query: 245 CPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304
           C  C                    KD   +   +R   D         +VR    + +  
Sbjct: 264 CQECT------------------TKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEF 305
Query: 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 364
                    +  L  C   QE +S+          ++   +V ++    + + + + ++D
Sbjct: 306 RRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLYMQD 355
Query: 365 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424
           W+ AL Y Q  I  Y + YP +   +   +   G+L   L       K++ +A+ I+ + 
Sbjct: 356 WEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVA 415
Query: 425 HGTNSPFMKELILKLE 440
           HG + P++ E+  ++E
Sbjct: 416 HGKDHPYISEIKQEIE 431

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 192/438 (43%), Gaps = 41/438 (9%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +            +       T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK+ L+ + IA L +     L +P+   + +   F+++ CN  TI + EL  LG+ ++P 
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
           ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FT
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 243 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 302
           C C  C                    KD   +   +R   D         +VR    + +
Sbjct: 262 CECQECT------------------TKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIE 303
Query: 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 362
                      +  L  C   QE +S+          ++   +V ++    + + + + +
Sbjct: 304 EFRRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLYM 353
Query: 363 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422
           +DW+ AL Y Q  I  Y + YP +   +   +   G+L   L       K++ +A+ I+ 
Sbjct: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413
Query: 423 ITHGTNSPFMKELILKLE 440
           + HG + P++ E+  ++E
Sbjct: 414 VAHGKDHPYISEIKQEIE 431

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 192/438 (43%), Gaps = 41/438 (9%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y  V   +   + C+ CF     L KC  C+  +YC   CQK DW +H+LE
Sbjct: 30  GDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLE 89
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +    +    S T  +            +       T ++    V+   +H+  +D 
Sbjct: 90  CSPMVVFGENWNPSETVRLTARILAKQKIHPER------TPSEKLLAVKEFESHLDKLDN 143
Query: 126 EKQLLLYAQIANLVNLI---LQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPV 182
           EK+ L+ + IA L +     L +P+   + +   F+++ CN  TI + EL  LG+ ++P 
Sbjct: 144 EKKDLIQSDIAALHHFYSKHLGFPDN--DSLVVLFAQVNCNGFTIEDEELSHLGSAIFPD 201
Query: 183 ISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFT 242
           ++++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FT
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 243 CTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKK 302
           C C  C                    KD   +   +R   D         +VR    + +
Sbjct: 262 CECQECT------------------TKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIE 303
Query: 303 IASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL 362
                      +  L  C   QE +S+          ++   +V ++    + + + + +
Sbjct: 304 EFRRAKHYKSPSELLEICELSQEKMSS----------VFEDSNVYMLHMMYQAMGVCLYM 353
Query: 363 EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR 422
           +DW+ AL Y Q  I  Y + YP +   +   +   G+L   L       K++ +A+ I+ 
Sbjct: 354 QDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIME 413
Query: 423 ITHGTNSPFMKELILKLE 440
           + HG + P++ E+  ++E
Sbjct: 414 VAHGKDHPYISEIKQEIE 431

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 63  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 122
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 123 CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 173
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 174 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 231
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++
Sbjct: 232 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 291
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
           QY F C C RC                              +D D    T  +      +
Sbjct: 292 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 323
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
           E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  +  
Sbjct: 324 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 370
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
           +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++ 
Sbjct: 371 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 430
Query: 416 EAVEILRITHG 426
            A +I+R+THG
Sbjct: 431 LAFDIMRVTHG 441

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 29  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 88
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 89  CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 139
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 140 EDKKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 197
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++
Sbjct: 198 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 257
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
           QY F C C RC                              +D D    T  +      +
Sbjct: 258 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 289
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
           E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  +  
Sbjct: 290 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 336
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
           +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++ 
Sbjct: 337 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 396
Query: 416 EAVEILRITHG 426
            A +I+R+THG
Sbjct: 397 LAFDIMRVTHG 407

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 27  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 87  CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
           QY F C C RC                              +D D    T  +      +
Sbjct: 256 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 287
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
           E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  +  
Sbjct: 288 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 334
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
           +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++ 
Sbjct: 335 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 394
Query: 416 EAVEILRITHG 426
            A +I+R+THG
Sbjct: 395 LAFDIMRVTHG 405

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 27  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 86
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 87  CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 137
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 138 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 195
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++
Sbjct: 196 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 255
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
           QY F C C RC                              +D D    T  +      +
Sbjct: 256 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 287
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
           E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  +  
Sbjct: 288 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 334
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
           +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++ 
Sbjct: 335 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 394
Query: 416 EAVEILRITHG 426
            A +I+R+THG
Sbjct: 395 LAFDIMRVTHG 405

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 194/431 (45%), Gaps = 64/431 (14%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 28  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67  CQVLSRLDKEKRKSVTPSIX-XXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 88  CKCL--------KSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 E------KQLLLYAQ--IANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGT 177
           E      +QL++  Q  +   +    Q P     ++ E F+K+ CN+ TICN+E++ +G 
Sbjct: 139 EDRKEGLRQLVMTFQHFMREEIQDASQLP--PAFDLFEAFAKVICNSFTICNAEMQEVGV 196
Query: 178 GLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKE 237
           GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++
Sbjct: 197 GLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRD 256
Query: 238 QYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSK 297
           QY F C C RC                              +D D    T  +      +
Sbjct: 257 QYCFECDCFRC----------------------------QTQDKDADMLTGDEQVWKEVQ 288
Query: 298 EEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EKL 355
           E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  +  
Sbjct: 289 ESLKKI-EELKAHWKWEQVLAMC---QAIISSNS--ERLP-------DINIYQLKVLDCA 335
Query: 356 IKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMT 415
           +   + L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++ 
Sbjct: 336 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 395
Query: 416 EAVEILRITHG 426
            A +I+R+THG
Sbjct: 396 LAFDIMRVTHG 406

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 185/432 (42%), Gaps = 66/432 (15%)
Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCF-ASSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 28  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLXRCSQCRVAKYCSAKCQKKAWPDHKRE 87
Query: 67  CQVLSRLDKEKRKSVTPSIXXXXXXXXXXXX-QNDNVIPSTTTDNYSLVEALVAHMSDID 125
           C+ L        KS  P               +  +  PS +   YS  + L ++++ + 
Sbjct: 88  CKCL--------KSCKPRYPPDSVRLLGRVVFKLXDGAPSESEKLYSFYD-LESNINKLT 138
Query: 126 EKQLLLYAQIANLVNLILQWPEISINEIA---------ENFSKLACNAHTICNSELRPLG 176
           E +      +  LV     +    I + +         E F+K+ CN+ TICN+E + +G
Sbjct: 139 EDR---KEGLRQLVXTFQHFXREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEXQEVG 195
Query: 177 TGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK 236
            GLYP IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L+
Sbjct: 196 VGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLR 255
Query: 237 EQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRS 296
           +QY F C C RC                              +D D    T  +      
Sbjct: 256 DQYCFECDCFRC----------------------------QTQDKDADXLTGDEQVWKEV 287
Query: 297 KEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--EK 354
           +E +KKI  E+    K    L  C   Q ++S+    E+L         +N+ Q +  + 
Sbjct: 288 QESLKKI-EELKAHWKWEQVLAXC---QAIISSNS--ERLP-------DINIYQLKVLDC 334
Query: 355 LIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSM 414
                + L   +EAL Y   T   Y+  +P  HP+ G+Q    GKL+   G    A K++
Sbjct: 335 AXDACINLGLLEEALFYGTRTXEPYRIFFPGSHPVRGVQVXKVGKLQLHQGXFPQAXKNL 394
Query: 415 TEAVEILRITHG 426
             A +I R+THG
Sbjct: 395 RLAFDIXRVTHG 406

>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 188/448 (41%), Gaps = 58/448 (12%)
Query: 7   SGEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRL 65
           + +VI ++  Y  V  +S     C  CF     L +C  C+   YC   CQK  W  H+ 
Sbjct: 29  AADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKN 88
Query: 66  ECQVLSRLDKEKRKSVTPSIXXXXXXXXXXXXQNDNVIPSTTTDNYSLVEALVAHMSDID 125
           EC  + +  K   +++  +               +  + S        ++  V H  + +
Sbjct: 89  ECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD-----LQNHVEHFGEEE 143
Query: 126 EKQLLLYAQIANLVNLILQWP----EISINEIAENFSKLACNAHTICNSE-LRPLGTGLY 180
           +K+L +     ++   +  WP    + S+  I+  F  + CN  T+ +   L+ +G G++
Sbjct: 144 QKELRV-----DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIF 198
Query: 181 PVISIINHSCLPNAVLVFE-GRLAVVRAVQH------------VPKGAEVLISYIETAGS 227
           P + ++NH C PN  ++F  G    V+++ H            + +G E+ +SYI+    
Sbjct: 199 PNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHL 258
Query: 228 TMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFT 287
           +  R++ LK+QY F C+C  C K G  DD+                  FL    D K   
Sbjct: 259 SEERRRQLKKQYYFDCSCEHCQK-GLKDDL------------------FLAAKEDPKP-- 297
Query: 288 CQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN 347
                   S+E +K++        +K     S G + EVV   +   + Q+ ++   ++ 
Sbjct: 298 --------SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY 349
Query: 348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDT 407
           +++      ++L  L+ ++EA  Y +  +  Y ++Y   +  LG+     G   W  G  
Sbjct: 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI 409
Query: 408 ENAIKSMTEAVEILRITHGTNSPFMKEL 435
           E     + +A  IL +THG + P  K+L
Sbjct: 410 EVGHGMICKAYAILLVTHGPSHPITKDL 437

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	455
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	1e-100
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	4e-91
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-87
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	2e-13
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	2e-13
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	5e-13
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	6e-12
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-04

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score =  305 bits (781), Expect = e-100
 Identities = 106/437 (24%), Positives = 200/437 (45%), Gaps = 37/437 (8%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           G+++ S   Y CV         C+ CFA    L KC  C+  +YC   CQK DW LH+LE
Sbjct: 30  GDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDID- 125
           C  +  L +      + ++RL  ++  ++K+  +     T ++    V    +H+  +D 
Sbjct: 90  CSSMVVLGENWNP--SETVRLTARILAKQKIHPER----TPSEKLLAVREFESHLDKLDN 143

Query: 126 EKQLLLYAQIANLVNLILQWPEI-SINEIAENFSKLACNAHTICNSELRPLGTGLYPVIS 184
           EK+ L+ + IA L     ++ E    + +   F+++ CN  TI + EL  LG+ ++P ++
Sbjct: 144 EKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVA 203

Query: 185 IINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCT 244
           ++NHSC PN ++ ++G LA VRAVQ +  G EV  SYI+    T  R   L++ Y FTC 
Sbjct: 204 LMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCE 263

Query: 245 CPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA 304
           C  C                              +D D      ++       E I+ + 
Sbjct: 264 CREC----------------------------TTKDKDKAKVEVRKLSSPPQAEAIRDMV 295

Query: 305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED 364
                + ++        +  E++   ++ ++    ++   +V ++    + + + + ++D
Sbjct: 296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD 355

Query: 365 WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT 424
           W+ AL Y Q  I  Y + YP +   +   +   G+L   L +     K++ +A+ I+ + 
Sbjct: 356 WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415

Query: 425 HGTNSPFMKELILKLEE 441
           HG + P++ E+  ++E 
Sbjct: 416 HGKDHPYISEIKQEIES 432

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score =  282 bits (721), Expect = 4e-91
 Identities = 112/445 (25%), Positives = 196/445 (44%), Gaps = 54/445 (12%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
           GE++   +P        S    CD C      L +CS C+V  YC + CQK  W  H+ E
Sbjct: 28  GELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRE 87

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDE 126
           C+ L      K +    S+RL+ ++  +           + ++       L ++++ + E
Sbjct: 88  CKCLKSC---KPRYPPDSVRLLGRVVFKLMDGAP-----SESEKLYSFYDLESNINKLTE 139

Query: 127 KQLLLYAQIANLVNLILQ------WPEISINEIAENFSKLACNAHTICNSELRPLGTGLY 180
            +     Q+       ++             ++ E F+K+ CN+ TICN+E++ +G GLY
Sbjct: 140 DRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLY 199

Query: 181 PVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYL 240
           P IS++NHSC PN  +VF G   ++RAV+ +  G E+ I Y++   ++  R+K L++QY 
Sbjct: 200 PSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYC 259

Query: 241 FTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEI 300
           F C C RC         +++ +L G                                   
Sbjct: 260 FECDCFRCQ-----TQDKDADMLTGDEQVWK----------------------------- 285

Query: 301 KKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILM 360
                EV    KK   L +    ++V++  + I     +     ++  ++  +  +   +
Sbjct: 286 -----EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI 340

Query: 361 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI 420
            L   +EAL Y   T+  Y+  +P  HP+ G+Q    GKL+   G    A+K++  A +I
Sbjct: 341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400

Query: 421 LRITHGTNSPFMKELILKLEEAQAE 445
           +R+THG     +++LIL LEE  A 
Sbjct: 401 MRVTHGREHSLIEDLILLLEECDAN 425

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score =  275 bits (703), Expect = 1e-87
 Identities = 98/455 (21%), Positives = 182/455 (40%), Gaps = 54/455 (11%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFA-SSNLKKCSACQVVWYCGSNCQKLDWKLHRLE 66
            +VI ++  Y  V  +S     C  CF     L +C  C+   YC   CQK  W  H+ E
Sbjct: 30  ADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNE 89

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDI-- 124
           C  + +  K   +++  + R+M ++               T      V+ L  H+     
Sbjct: 90  CAAIKKYGKVPNENIRLAARIMWRVEREG--------TGLTEGCLVSVDDLQNHVEHFGE 141

Query: 125 DEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSE-LRPLGTGLYPVI 183
           +E++ L       L     Q  + S+  I+  F  + CN  T+ +   L+ +G G++P +
Sbjct: 142 EEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNL 201

Query: 184 SIINHSCLPNAVLVFEGRL-------------AVVRAVQHVPKGAEVLISYIETAGSTMT 230
            ++NH C PN  ++F                   +RA+  + +G E+ +SYI+    +  
Sbjct: 202 GLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEE 261

Query: 231 RQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQ 290
           R++ LK+QY F C+C  C                              +   D  F   +
Sbjct: 262 RRRQLKKQYYFDCSCEHC-----------------------------QKGLKDDLFLAAK 292

Query: 291 CGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ 350
                S+E +K++        +K     S G + EVV   +   + Q+ ++   ++ +++
Sbjct: 293 EDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLR 352

Query: 351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENA 410
                 ++L  L+ ++EA  Y +  +  Y ++Y   +  LG+     G   W  G  E  
Sbjct: 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVG 412

Query: 411 IKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE 445
              + +A  IL +THG + P  K+L     + + E
Sbjct: 413 HGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 22 NNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
           NS S   C  C   +  + CS C    YCGS CQ  DW+ H   C 
Sbjct: 8  PNSDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICG 53

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 NNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKS 80
            +    RC  C A +  K+CS CQ  WYC   CQ   W+ H   C + ++ D+ K   
Sbjct: 10 AVAPERPRCAYCSAEA-SKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQGDRAKSGP 67

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 62.7 bits (152), Expect = 5e-13
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 20 VPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS 71
          +     S   C  C   +  + CS C    YCGS CQ  DW+ H   C   S
Sbjct: 8  INQQEDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICSGPS 58

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 60.0 bits (145), Expect = 6e-12
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 21 PNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
               S   C  C   +  + CS C    YCGS CQ  DW+ H   C 
Sbjct: 11 YFQGDSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHICG 57

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ 68
           C  C   + + +C+ C  V YC + CQ+ DWK H+  C 
Sbjct: 11 SCVNCGREA-MSECTGCHKVNYCSTFCQRKDWKDHQHICG 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 67/482 (13%), Positives = 149/482 (30%), Gaps = 137/482 (28%)

Query: 36  SSNLKKCSACQVVWYCGSNCQKLD------WKL-HRLECQVLSRLDKEKRKSVTPSIRL- 87
           S  ++     ++ W    NC   +       KL ++++    SR D     S    +R+ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIKLRIH 228

Query: 88  MLKLYLRRKLQN----------DNV-IPST------------TTDNYSLVEALVA----H 120
            ++  LRR L++           NV                 TT    + + L A    H
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 121 MSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLY 180
           +S       L   +   + +L+L++ +    ++           +        P      
Sbjct: 289 ISLDHHSMTLTPDE---VKSLLLKYLDCRPQDLPR----EVLTTN--------PR----- 328

Query: 181 PVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYL 240
             +SII  S + + +  ++         +HV    + L + IE   S++   +  + + +
Sbjct: 329 -RLSIIAES-IRDGLATWDN-------WKHV--NCDKLTTIIE---SSLNVLEPAEYRKM 374

Query: 241 FTCTCPRCIKLGQF-DDIQ-ESAILEGYRCKD---------DGCSGFLLRDSDDKGFTCQ 289
           F        +L  F       + +L                +    + L +   K  T  
Sbjct: 375 FD-------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI- 426

Query: 290 QCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKK---------- 339
                     I  I  E+ +  +   AL     H+ +V  Y + +               
Sbjct: 427 ---------SIPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 340 -----LYHPFSVNLMQTREKLIKILMELEDWKEA-LAYCQLTIPVYQRVYPQFHPLLGLQ 393
                 +H  ++   +       + ++   + E  + +       +       + L  L+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKIRH---DSTAWNASGSILNTLQQLK 528

Query: 394 YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN---SPFMKELILKL---EEAQAEAS 447
           +Y     + ++ D +   + +  A+         N   S +   L + L   +EA  E +
Sbjct: 529 FY-----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Query: 448 YK 449
           +K
Sbjct: 584 HK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 40/272 (14%), Positives = 83/272 (30%), Gaps = 60/272 (22%)

Query: 210 HVPKGAEVLISYIETAGSTMTRQ---KALKEQYLFTCTCPRCIKLGQFDDIQESAILEGY 266
               G   L   + +    M ++   + L+  Y F  +      + + +  Q S +   Y
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-----PI-KTEQRQPSMMTRMY 112

Query: 267 -RCKDDGCSGFLLRDSD--DKGFTCQQCGLVRSKEEIKKIASEVNIL-------SKKTLA 316
              +D      L  D+    K    +    ++ ++ + ++    N+L        K  +A
Sbjct: 113 IEQRDR-----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 317 LTSCGNHQ---------------EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME 361
           L  C +++                  S   ++E LQK L +    N     +    I + 
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLR 226

Query: 362 LEDWKEALAYCQLTIPVYQRVYPQFHPLLGL-QYYTCGKLEWF------LGDTENAIKSM 414
           +   +  L           + Y   + LL L           F      L  T    K +
Sbjct: 227 IHSIQAELRRLLK-----SKPYE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQV 277

Query: 415 TEAVEILRITHGTNSPFMKELILKLEEAQAEA 446
           T+ +     TH      +    + L   + ++
Sbjct: 278 TDFLSAATTTH----ISLDHHSMTLTPDEVKS 305

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 58/407 (14%), Positives = 125/407 (30%), Gaps = 112/407 (27%)

Query: 11  IISQEPY---VCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQK-LDWKLHRLE 66
           I+S+E     +   +  S   R      S   +      V  +     +    +      
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEVLRINYKF------ 93

Query: 67  CQVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYS-------LVEALVA 119
             ++S +  E+R+   PS+   + +  R +L NDN        N S       L +AL  
Sbjct: 94  --LMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQAL-- 144

Query: 120 HMSDIDEKQLLLYAQIANLVNLILQWPEISINEIAENFSK--LACNAHTICNSE--LRPL 175
            +     K +L+   +                       K  +A +    C S      +
Sbjct: 145 -LELRPAKNVLIDGVLG--------------------SGKTWVALDV---CLSYKVQCKM 180

Query: 176 GTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKAL 235
              ++  +++ N +  P  VL    +L + +   +    ++   +      S     + L
Sbjct: 181 DFKIF-WLNLKNCNS-PETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 236 --KEQYLFTCTCPRC-IKLGQFDDIQESAILEGY--RCK------DDGCSGFLLR----- 279
              + Y        C + L    ++Q +     +   CK          + FL       
Sbjct: 238 LKSKPY------ENCLLVL---LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 280 ---DSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTSCGNHQEVVSTYKMI-EK 335
              D      T          +E+K +  +      + L       +   +S   +I E 
Sbjct: 289 ISLDHHSMTLT---------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAES 336

Query: 336 LQKKL-----Y-HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTI 376
           ++  L     + H     L    E  + +L E  ++++   + +L++
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRK--MFDRLSV 380

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 2/134 (1%)

Query: 310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEAL 369
            S     L   G     ++  +  E++ ++         + +  +  +IL      + A 
Sbjct: 56  TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA--LWSLIQQSEILFAQGFLQTAW 113

Query: 370 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS 429
              +    +    + +  P+         +L W     + A  S    +E+L        
Sbjct: 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173

Query: 430 PFMKELILKLEEAQ 443
                ++++   A+
Sbjct: 174 LQCLAMLIQCSLAR 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	455
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	100.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	100.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	100.0
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	99.59
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	99.51
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.44
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	99.36
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	99.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.29
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.22
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	99.21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.15
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.12
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.1
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	99.09
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	99.0
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	98.99
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.99
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	98.95
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.95
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.92
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	98.91
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	98.9
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.86
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	98.86
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	98.84
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.82
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	98.82
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.82
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	98.78
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	98.78
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	98.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.76
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	98.74
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.73
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	98.72
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.7
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	98.69
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	98.68
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.64
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.64
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	98.62
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	98.62
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.6
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.56
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.56
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.54
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.53
2h21_A	440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	98.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.52
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.5
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.5
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.49
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.49
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.48
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.46
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.46
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.45
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.45
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.42
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.4
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.39
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.38
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.38
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.37
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.36
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.34
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.33
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.31
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.31
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.29
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.29
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.28
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.26
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.24
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.21
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.2
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.18
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.16
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.14
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.14
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.1
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.08
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.06
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.02
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.02
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.02
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.01
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.99
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.98
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.96
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.96
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.96
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.95
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.94
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.93
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.93
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.92
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.91
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.91
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.89
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.84
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.82
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.82
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.8
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	97.8
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.79
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.78
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.78
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.78
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.78
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.74
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.7
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.7
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.69
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.69
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	97.67
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.64
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.61
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.59
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.59
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.58
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.53
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.5
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.49
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.47
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.45
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.44
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	97.41
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.41
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.41
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.38
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.38
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.37
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.31
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.3
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.29
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.29
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.27
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.23
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.17
3ihx_A	152	PR domain zinc finger protein 10; PRDM10, methyltr	97.16
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.02
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.02
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.01
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.0
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.95
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.95
3ray_A	237	PR domain-containing protein 11; structural genomi	96.91
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.86
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.84
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.84
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.74
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.72
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.71
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.68
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.62
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.6
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.52
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.49
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.31
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.29
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.0
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.93
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.76
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.46
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.39
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.23
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	94.93
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.64
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.49
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	94.42
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.41
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	94.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.36
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.6
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	93.05
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.04
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.03
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	92.58
2o8p_A	227	14-3-3 domain containing protein; signaling protei	92.55
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	92.18
1pc2_A	152	Mitochondria fission protein; unknown function; NM	92.17
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	91.51
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	91.48
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.4
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	91.15
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.09
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	90.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.62
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	90.6
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	90.26
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	89.97
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	89.88
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	89.77
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	89.51
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	88.73
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	88.08
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.02
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.22
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	87.16
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	85.76
2npm_A	260	14-3-3 domain containing protein; cell regulator p	85.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	84.7
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	83.87
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	83.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	83.41
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	83.05
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	82.05
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	80.94
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	80.71
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.49

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=100.00  E-value=2.1e-76  Score=593.27  Aligned_cols=405  Identities=24%  Similarity=0.494  Sum_probs=345.3

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCccccCc-CCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhchhhhccCC
Q 012829            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (455)
Q Consensus         3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~~~~~~~~   81 (455)
                      ++|++||+|+.|+|+++++.......+|.+|++. ..+.+|++|+.++|||++||+++|..|+.||+.++.+....  .+
T Consensus        25 r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~~~~~~--~p  102 (433)
T 3qww_A           25 RPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENW--NP  102 (433)
T ss_dssp             SCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHHSSTTC--CC
T ss_pred             CCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHHhCccC--CC
Confidence            6899999999999999999888889999999997 46899999999999999999999999999999999875432  24


Q ss_pred             CHHHHHHHHHHHHHHhhCCCCCCCCCCCchhHHHHhhcccCCCChHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHhh
Q 012829           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQW--PEISINEIAENFSK  159 (455)
Q Consensus        82 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~i~~~~~~  159 (455)
                      +..+++++|+++++..+... .   ..+.+..+..|++|.+++.+++...+......+..+++.  ...+.++|..++++
T Consensus       103 ~~~~rl~~Ril~~~~~~~~~-~---~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~  178 (433)
T 3qww_A          103 SETVRLTARILAKQKIHPER-T---PSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQ  178 (433)
T ss_dssp             CHHHHHHHHHHHHHHHCCSC-C---GGGSSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhcccc-C---chhhhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            56789999998876544321 1   123455678899999988876543332222223333332  24578899999999


Q ss_pred             hhccccccccCCCCcceeeecccccccCCCCCCCcEEEEeCCEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccC
Q 012829          160 LACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQY  239 (455)
Q Consensus       160 ~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y  239 (455)
                      +.+|+|++.+.+...+|.||||.+|+|||||+||+.+.|+|+.++|+|+|||++||||||||++..+++.+||+.|++.|
T Consensus       179 ~~~N~f~i~~~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~  258 (433)
T 3qww_A          179 VNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSY  258 (433)
T ss_dssp             HHHHCEEEECTTCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHH
T ss_pred             HcCCceecccCCccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcC
Confidence            99999999988888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccCCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHhhh
Q 012829          240 LFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTLALTS  319 (455)
Q Consensus       240 ~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~e~~~l~~~a~~~~~  319 (455)
                      +|+|.|.+|.+++      +|....++++    |                  +.....++++.+........+.......
T Consensus       259 ~F~C~C~~C~~~~------~d~~~~~~~~----~------------------~~~~~~e~v~~~~~~~~~~le~~~~~~~  310 (433)
T 3qww_A          259 FFTCECRECTTKD------KDKAKVEVRK----L------------------SSPPQAEAIRDMVRYARNVIEEFRRAKH  310 (433)
T ss_dssp             SCCCCSHHHHHCT------THHHHTCBCC----C------------------SSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEeECCCCCCCC------cchhhhhhhh----c------------------CCCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999963      2333333321    1                  1112345666666666666666666667


Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  399 (455)
Q Consensus       320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  399 (455)
                      .|+|++|+.+++++++++++++|++|+.++.++++|+.+|..+|+|++|+.++++++.+++++||++||.+|..+++||.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829          400 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  441 (455)
Q Consensus       400 l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~  441 (455)
                      +|+.+|++++|++++++|++|+++++|++||.+++++.+|++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~  432 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES  432 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=100.00  E-value=4.3e-76  Score=599.90  Aligned_cols=408  Identities=24%  Similarity=0.434  Sum_probs=356.4

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCccccCc-CCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhchhhhccCC
Q 012829            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (455)
Q Consensus         3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~~~~~~~~   81 (455)
                      ++|++||+|+.|+|+++++.......+|.+|++. ..+.+|++|++++|||++||+.+|..|+.||+.++.+..    .+
T Consensus        25 r~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~~----~p  100 (490)
T 3n71_A           25 KEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGK----VP  100 (490)
T ss_dssp             SCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHHHTS----CC
T ss_pred             cCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHhcCc----CC
Confidence            6899999999999999998888889999999997 458999999999999999999999999999999988752    34


Q ss_pred             CHHHHHHHHHHHHHHhhCCCCCCCCCCCchhHHHHhhcccCCCChHHHHHHHH-HHHHHHHHhcC--CCCCHHHHHHHHh
Q 012829           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQ-IANLVNLILQW--PEISINEIAENFS  158 (455)
Q Consensus        82 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~i~~~~~  158 (455)
                      +..+++++|++++...+....    ....+..+..|++|.+++.+++...+.. +..++. +++.  ..++.++|..+++
T Consensus       101 ~~~~rl~lRiL~~~~~~~~~~----~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~  175 (490)
T 3n71_A          101 NENIRLAARIMWRVEREGTGL----TEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQ-YWPPQSQQFSMQYISHIFG  175 (490)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSB----CTTCSSBGGGSCCCGGGCCHHHHHHHHHHHHHHHH-HSCTTSCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccCccC----cchhhhHHHHHHhhhhhcCchHHHHHHHHHHHHHH-HccccccCCCHHHHHHHHH
Confidence            567899999998765443221    1234667889999999998776544333 333433 3432  3578899999999


Q ss_pred             hhhccccccccCC-CCcceeeecccccccCCCCCCCcEEEEeCC-------------EEEEEEecccCCCCeeEEeecCC
Q 012829          159 KLACNAHTICNSE-LRPLGTGLYPVISIINHSCLPNAVLVFEGR-------------LAVVRAVQHVPKGAEVLISYIET  224 (455)
Q Consensus       159 ~~~~N~~~i~~~~-~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~-------------~~~v~a~r~I~~GeEi~isY~~~  224 (455)
                      ++.+|+|++.+.+ ...+|.||||.+|+|||||+||+.+.|+++             .++|+|+|||++||||||||++.
T Consensus       176 ~~~~N~f~i~~~~g~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~~  255 (490)
T 3n71_A          176 VINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDF  255 (490)
T ss_dssp             HHHTTEEEEECTTSCSEEEEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSCS
T ss_pred             HHhccCcccccCCCCccceEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEECCCCCCCCEEEEeecCC
Confidence            9999999998776 468899999999999999999999999987             89999999999999999999999


Q ss_pred             CCCHHHHHHHHhccCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccCCCCCCcccCCCCCcCCHHHHHHHH
Q 012829          225 AGSTMTRQKALKEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIA  304 (455)
Q Consensus       225 ~~~~~~R~~~L~~~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~  304 (455)
                      .+++.+||+.|++.|+|+|.|.+|.++.     ..+.++ ++.+                       +...+.+.+..+.
T Consensus       256 ~~~~~~R~~~L~~~~~F~C~C~~C~~~~-----~~~~~~-~~~~-----------------------~~~~s~e~v~~~l  306 (490)
T 3n71_A          256 LHLSEERRRQLKKQYYFDCSCEHCQKGL-----KDDLFL-AAKE-----------------------DPKPSQEVVKEMI  306 (490)
T ss_dssp             CSCHHHHHHHHHHHHSSCCCCHHHHHTT-----THHHHT-CBCS-----------------------SSCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCeEeeCCCCCCCC-----cccchh-hccc-----------------------CCCCCHHHHHHHH
Confidence            9999999999999999999999999963     223333 2211                       0123567888888


Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      ..++.+.+++..+..+|+|++|+.+++++++++++++|++|+.++.++++|+.+|..+|+|++|+.++++++.+++++||
T Consensus       307 ~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          307 QFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  448 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~  448 (455)
                      ++||.+|..+++||.+|..+|++++|+.++++|++|++.++|++||.+.+++.+|.+++.+++.
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999887764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=100.00  E-value=4.5e-75  Score=584.84  Aligned_cols=399  Identities=28%  Similarity=0.502  Sum_probs=341.9

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCccccCc-CCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhhchhhhccCC
Q 012829            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFAS-SNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSRLDKEKRKSV   81 (455)
Q Consensus         3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~l~~~~~~~~   81 (455)
                      ++|++||+|+.|.|++.++.......+|.+|++. ..+.+|++|++++|||++||+++|+.|+.||+.++.+.+.   .+
T Consensus        23 r~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~~~~---~~   99 (429)
T 3qwp_A           23 TPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPR---YP   99 (429)
T ss_dssp             SCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHHTTTC---CC
T ss_pred             CCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHhcCcc---CC
Confidence            6899999999999999999887889999999997 4589999999999999999999999999999999987542   34


Q ss_pred             CHHHHHHHHHHHHHHhhCCCCCCCCCCCchhHHHHhhcccCCCChHHHHHHHHHHHHHHHHhcCC------CCCHHHHHH
Q 012829           82 TPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEKQLLLYAQIANLVNLILQWP------EISINEIAE  155 (455)
Q Consensus        82 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~i~~  155 (455)
                      ...+++++|++++.....    + +..+.|..+..|++|.+++.+++...+..+...+..++...      ..+.+++.+
T Consensus       100 ~~~~rl~~rill~~~~~~----~-~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  174 (429)
T 3qwp_A          100 PDSVRLLGRVVFKLMDGA----P-SESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFE  174 (429)
T ss_dssp             CHHHHHHHHHHHHHHHSC----C-CGGGSSSCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGGSCTTCCHHH
T ss_pred             ChHHHHHHHHHHHHhcCC----C-CchhhhhhHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCccccCCCHHHHHH
Confidence            466889999888654211    1 12244556889999999988776555555544445555332      123457899


Q ss_pred             HHhhhhccccccccCCCCcceeeecccccccCCCCCCCcEEEEeCCEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHH
Q 012829          156 NFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKAL  235 (455)
Q Consensus       156 ~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L  235 (455)
                      +++++.+|+|++.+.+..++|.|+||.+|+|||||.||+.+.|+|+.++|+|+|||++||||||||++..+++.+||+.|
T Consensus       175 ~~~~~~~N~f~i~~~~~~~~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~isY~~~~~~~~~R~~~L  254 (429)
T 3qwp_A          175 AFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL  254 (429)
T ss_dssp             HHHHHHHHCEEEECTTSCEEEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEECCSCSSCCHHHHHHHH
T ss_pred             HHHHHHhcCccccccccccceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999998888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCeeeeccccCCCCCCCchhhhhhHhhCccCCCCCCcccccCCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHH
Q 012829          236 KEQYLFTCTCPRCIKLGQFDDIQESAILEGYRCKDDGCSGFLLRDSDDKGFTCQQCGLVRSKEEIKKIASEVNILSKKTL  315 (455)
Q Consensus       236 ~~~y~F~C~C~rC~~~~~~~~~~~~~~~~~~~C~~~~C~g~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~e~~~l~~~a~  315 (455)
                      +++|+|+|.|.+|.++.     ..+.++.               .. .                  ..+..++.+.+...
T Consensus       255 ~~~~~F~C~C~~C~~~~-----~~~~~~~---------------~~-~------------------~~~~~~~~ll~~ie  295 (429)
T 3qwp_A          255 RDQYCFECDCFRCQTQD-----KDADMLT---------------GD-E------------------QVWKEVQESLKKIE  295 (429)
T ss_dssp             HHHHCCCCCSHHHHHTT-----THHHHTC---------------SC-H------------------HHHHHHHHHHHHHH
T ss_pred             hccCCeEeeCCCCCCCc-----ccccccc---------------cc-h------------------hhhHHHHHHHHHHH
Confidence            99999999999999962     1111111               00 0                  01122334445555


Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  395 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  395 (455)
                      .+..+|++++|+.+++++++++.+++|++|+.++.++++|+.+|..+|+|++|+.++++++.+++++||++||.+|..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhh
Q 012829          396 TCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASY  448 (455)
Q Consensus       396 ~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~  448 (455)
                      +||.+|+.+|++++|++++++|++|++.++|++||.+++++.+|++++.++..
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  428 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIRA  428 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999998863

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=99.59  E-value=5.1e-16  Score=141.25  Aligned_cols=80  Identities=29%  Similarity=0.408  Sum_probs=66.7

Q ss_pred             hccccccccCCCCcceeeeccc-ccccCCCCCCCcEEEEe-CCEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhcc
Q 012829          161 ACNAHTICNSELRPLGTGLYPV-ISIINHSCLPNAVLVFE-GRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ  238 (455)
Q Consensus       161 ~~N~~~i~~~~~~~~g~~lyp~-~s~~NHSC~PN~~~~~~-~~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~  238 (455)
                      ..|.|.+..+. .....++|+. ++++||||+||+.+.+. +..+.|+|+|||++|||||++|++..++          .
T Consensus       155 ~~n~f~i~~~~-~~~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~~~----------~  223 (247)
T 3rq4_A          155 GENDFSIMYST-RKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFG----------E  223 (247)
T ss_dssp             TTSCTTEEEET-TTTEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTSSS----------G
T ss_pred             cCCcEEEEecC-CcccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchhcC----------C
Confidence            46777775442 3457889987 88999999999987754 6789999999999999999999998664          4


Q ss_pred             CCeeeeccccCCC
Q 012829          239 YLFTCTCPRCIKL  251 (455)
Q Consensus       239 y~F~C~C~rC~~~  251 (455)
                      ++|.|.|.+|..+
T Consensus       224 ~~f~C~C~~C~~~  236 (247)
T 3rq4_A          224 KNEHCECHTCERK  236 (247)
T ss_dssp             GGTTCCCHHHHHH
T ss_pred             CCCEEECCCCCCC
Confidence            7899999999885

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=99.51  E-value=5.1e-15  Score=135.98  Aligned_cols=82  Identities=24%  Similarity=0.342  Sum_probs=64.0

Q ss_pred             hhccccccccCCCCcceeeecccccccCCCCCCCcEEEEeCC-EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhcc
Q 012829          160 LACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEGR-LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQ  238 (455)
Q Consensus       160 ~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~-~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~  238 (455)
                      ...|.|.+........+......++++||||+||+.+.++|. .+.++|+|||++|||||++|++..++          .
T Consensus       183 ~~~~dF~i~~s~~~~~a~~~g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~----------~  252 (273)
T 3s8p_A          183 HGENDFSVMYSTRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFG----------E  252 (273)
T ss_dssp             TTTSCTTEEEETTTTEEEEEESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTTTS----------G
T ss_pred             hcccccceeccccccccceecchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchhcC----------C
Confidence            346777765443333343344557999999999999988875 89999999999999999999988654          4


Q ss_pred             CCeeeeccccCCC
Q 012829          239 YLFTCTCPRCIKL  251 (455)
Q Consensus       239 y~F~C~C~rC~~~  251 (455)
                      ++|.|.|.+|.-.
T Consensus       253 ~~f~C~C~~c~cr  265 (273)
T 3s8p_A          253 NNEFCECYTCERR  265 (273)
T ss_dssp             GGTTCCCHHHHHH
T ss_pred             CCeEEECCCCcCC
Confidence            6899999999764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.44  E-value=4.9e-13  Score=135.84  Aligned_cols=113  Identities=12%  Similarity=-0.065  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +..+.+.|..+..+|+|++|+.++++++++.++++|++||.++.++.+|+.+|..+|+|++|..++++++.++++++|++
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            44556677788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ||.++..+.+|+..+..++++++|+..|++|.+
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999864

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=99.36  E-value=1.3e-13  Score=98.80  Aligned_cols=59  Identities=32%  Similarity=0.619  Sum_probs=40.7

Q ss_pred             CCCCCCCeEEEeCCceeecCCCCCCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhh
Q 012829            3 SFHVSGEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS   71 (455)
Q Consensus         3 ~~i~~Ge~il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~   71 (455)
                      .+|++||+|+.+.|         ....|..|++. .+.+|++|+.++|||.+||..+|..|+.+|..+.
T Consensus         2 ~~~~~G~~il~~~~---------~~~~C~~C~~~-~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~   60 (64)
T 2odd_A            2 NLYFQGENLYFQGD---------SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL   60 (64)
T ss_dssp             -------------C---------CSSSCTTTSSC-CCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSC
T ss_pred             CcCCCCCEEeeCCC---------CCCcCccccCC-CcccCCCCCChhhCCHHHHHHHHHHHhHHHhccc
Confidence            57999999999998         25789999984 5899999999999999999999999999998543

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=99.35  E-value=3.2e-13  Score=110.22  Aligned_cols=54  Identities=22%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             ceeeecccccccCCCCCCCcEEEEe--CCEEEEEEecccCCCCeeEEeecCCCCCH
Q 012829          175 LGTGLYPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEVLISYIETAGST  228 (455)
Q Consensus       175 ~g~~lyp~~s~~NHSC~PN~~~~~~--~~~~~v~a~r~I~~GeEi~isY~~~~~~~  228 (455)
                      .+..+++.++++||||+||+...++  +..+.++|+|||++|||||++|++..+..
T Consensus        57 d~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~  112 (119)
T 1n3j_A           57 MSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLS  112 (119)
T ss_dssp             EEEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCCCCC
T ss_pred             ccccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchhhcC
Confidence            5778999999999999999999987  34799999999999999999999987654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.29  E-value=1e-10  Score=108.51  Aligned_cols=141  Identities=17%  Similarity=0.178  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...+..+...|++++|+..+++++++....++++++....+...++.+|...|++++|+.++++++..+++..+++
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            34455667778889999999999999999988888899999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                      +|..+..+.++|.++..+|++++|+.++++|+++.+...|+++|....+...|..+.....
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  183 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG  183 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999998888888777755443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.22  E-value=4.6e-11  Score=119.42  Aligned_cols=87  Identities=16%  Similarity=0.126  Sum_probs=82.5

Q ss_pred             HhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          360 MELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       360 ~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                      ...|+|++|+.++++++.+.++++|++||.++..+++||.+|..+|++++|+.++++|++|.+..+|++||.+...+..|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 012829          440 EEAQAEA  446 (455)
Q Consensus       440 ~~~~~~~  446 (455)
                      ..+....
T Consensus       389 a~~~~~q  395 (433)
T 3qww_A          389 GRLYMGL  395 (433)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            8886544

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=99.21  E-value=7.9e-12  Score=110.02  Aligned_cols=55  Identities=27%  Similarity=0.529  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCcEEEE---eC-CEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeec
Q 012829          182 VISIINHSCLPNAVLVF---EG-RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTC  245 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~~---~~-~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C  245 (455)
                      .++++||||+||+...+   +| ..+.++|+|||++|||||++|.+..+..         .+.|.|.|
T Consensus       124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~---------~~~~~C~C  182 (192)
T 2w5y_A          124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA---------SNKLPCNC  182 (192)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC----------------CCBCCC
T ss_pred             hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcC---------CCCceeEC
Confidence            46789999999998743   34 3688999999999999999999876532         46899998

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.16  E-value=2.9e-10  Score=105.37  Aligned_cols=129  Identities=14%  Similarity=0.043  Sum_probs=119.5

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      ....|++++|+..+++++++..++.++.++....++..++.+|...|++++|+.++++++...+..+|+++|..+..+.+
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34678999999999999999888888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          397 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      +|.++..+|++++|+.++++|+++.+...|+++|....+...+..+...
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  139 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN  139 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988888777776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.15  E-value=1.7e-10  Score=115.41  Aligned_cols=98  Identities=10%  Similarity=-0.014  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +..+.+.+..+..+|+|++|+.++++++++.++++|+.||.++.++.+|+.+|..+|++++|+.+++++++++++++|++
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~  408 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE  408 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            34455566777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhhc
Q 012829          387 HPLLGLQYYTCGKLEWFL  404 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~  404 (455)
                      ||.++..+.+|+.+...+
T Consensus       409 Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          409 HSLIEDLILLLEECDANI  426 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHH
Confidence            999999999998887544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=2e-09  Score=101.34  Aligned_cols=139  Identities=16%  Similarity=0.153  Sum_probs=126.3

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+...+..+...|++++|+..+++++.+.....+++++....+...++.+|...|++++|+.++++++...+..+|+++|
T Consensus        71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  150 (311)
T 3nf1_A           71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP  150 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            34455667778899999999999999998888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                      ..+..++.+|.++...|++++|+.++++|+++.+...|+++|....+...+..+.....
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  209 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG  209 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999998888877777755443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=1.9e-09  Score=101.50  Aligned_cols=138  Identities=14%  Similarity=0.090  Sum_probs=124.7

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..+++++++.....++.++....+...++.+|...|++++|+.++++++...+..+|+++
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34455566777899999999999999998877777788888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      |..+..++.+|.++...|++++|+.++++|+++.+..+|+++|....+...+..+...
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  165 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN  165 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888888777766543

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=99.09  E-value=2.5e-11  Score=105.16  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=45.0

Q ss_pred             cccccCCCCCCCcEEE--EeCC--EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHh
Q 012829          182 VISIINHSCLPNAVLV--FEGR--LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALK  236 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~--~~~~--~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~  236 (455)
                      .+.++||||.|||...  +.++  .+.++|+|||++|||||++|.+.......|+.+|+
T Consensus       107 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~L~  165 (166)
T 3f9x_A          107 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIEAHPWLK  165 (166)
T ss_dssp             SGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCHHHHHHCGGGG
T ss_pred             hhheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChhhHhhhCchhc
Confidence            3578999999998764  3343  58899999999999999999998877777777665

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=99.00  E-value=1.3e-10  Score=105.14  Aligned_cols=56  Identities=25%  Similarity=0.358  Sum_probs=43.3

Q ss_pred             cccccCCCCCCCcEEEE--eCC--EEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeecc
Q 012829          182 VISIINHSCLPNAVLVF--EGR--LAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP  246 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~~--~~~--~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C~  246 (455)
                      .+.++||||+||+.+..  .++  .+.++|+|||++|||||++|.+..+..         ...|.|.|-
T Consensus       146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~---------~~~~~C~CG  205 (222)
T 3ope_A          146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNV---------EKQQLCKCG  205 (222)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCC---------SCCCBCCCC
T ss_pred             cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCC---------cCCCEeeCC
Confidence            35688999999998754  333  688999999999999999998875532         235777664

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=98.99  E-value=2.2e-10  Score=104.31  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=43.4

Q ss_pred             cccccCCCCCCCcEEEE--eC--CEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeecc
Q 012829          182 VISIINHSCLPNAVLVF--EG--RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCP  246 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~~--~~--~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C~  246 (455)
                      .+.++||||+||+.+.+  .+  ..+.++|+|||++|||||++|....+.          ...|.|.|-
T Consensus       165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~----------~~~~~C~CG  223 (232)
T 3ooi_A          165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLG----------NGKTVCKCG  223 (232)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTT----------CTTCBCCCC
T ss_pred             ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCC----------CCCcEeECC
Confidence            46789999999998753  22  368899999999999999999876542          346888773

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.99  E-value=1.7e-08  Score=82.87  Aligned_cols=105  Identities=11%  Similarity=0.081  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +....+.+..++..|++++|+..|++++++     .|.   -..++.+++.+|..+|+|++|++.+++++.+... .+..
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~   78 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRAD   78 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchh
Confidence            334455677788999999999999999875     233   3567889999999999999999999999997764 4557


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ++.++..++++|.++..+|++++|+.++++|+.+
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7889999999999999999999999999999974

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=98.95  E-value=5.4e-10  Score=113.18  Aligned_cols=92  Identities=14%  Similarity=0.111  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHhhhhccccccccCCCCcceeeecccccccCCCCCCCc-EEEEeCCEEEEEEecccCCCCeeEEeecCCC
Q 012829          147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNA-VLVFEGRLAVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       147 ~~~~~~i~~~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~-~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      .++.+.+.-.++.+.+++|.+...+....+.+|+|.+.++||||.||. .+.++++.+.++|.++|++||||+|||++..
T Consensus       237 ~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~~  316 (497)
T 3smt_A          237 SFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRS  316 (497)
T ss_dssp             CCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSCC
T ss_pred             ccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCCC
Confidence            467788888888899999988765555667899999999999999964 4445678899999999999999999999863


Q ss_pred             CCHHHHHHHHhccCCeeee
Q 012829          226 GSTMTRQKALKEQYLFTCT  244 (455)
Q Consensus       226 ~~~~~R~~~L~~~y~F~C~  244 (455)
                            ...|...|||.+.
T Consensus       317 ------n~~Ll~~YGFv~~  329 (497)
T 3smt_A          317 ------NAEFVIHSGFFFD  329 (497)
T ss_dssp             ------HHHHHHHHSCCCT
T ss_pred             ------hHHHHHHCCCCCC
Confidence                  2567779999964

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.95  E-value=2.1e-08  Score=81.66  Aligned_cols=122  Identities=11%  Similarity=0.047  Sum_probs=101.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +...+..+...|++++|+..++++++.     .|.++....+...++.++...|+|++|+.++++++...     |.++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~   74 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDK   74 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcc
Confidence            345667778899999999999988764     46677777888899999999999999999999988743     56766


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      ....++.+|.++..+|++++|+..++++++..     |+++........|..+...+
T Consensus        75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~~~~  126 (129)
T 2xev_A           75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIRLGQ  126 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC---
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHhhh
Confidence            77889999999999999999999999999853     88999999888888876654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.92  E-value=3.4e-08  Score=81.04  Aligned_cols=107  Identities=14%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      +...+.+..++..|++++|+..|++++++     .|.   -..++.+++.+|..+|++++|+..+++++.+     .+.+
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~   80 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSKF   80 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhhh
Confidence            44556778888999999999999999875     233   3567788999999999999999999999874     2333


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKEL  435 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~  435 (455)
                         ...++++|.++..+|++++|+..+++|+++     .|+++....-
T Consensus        81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l-----~P~~~~a~~~  120 (126)
T 4gco_A           81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQV-----DPSNEEAREG  120 (126)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred             ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CcCCHHHHHH
Confidence               456999999999999999999999999985     5777655443

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=98.90  E-value=1.2e-09  Score=109.46  Aligned_cols=90  Identities=23%  Similarity=0.239  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHhhhhccccccccCC----CCcceeeecccccccCCCCCCCcEEEEeCCEEEEEEecccCCCCeeEEeecC
Q 012829          148 ISINEIAENFSKLACNAHTICNSE----LRPLGTGLYPVISIINHSCLPNAVLVFEGRLAVVRAVQHVPKGAEVLISYIE  223 (455)
Q Consensus       148 ~~~~~i~~~~~~~~~N~~~i~~~~----~~~~g~~lyp~~s~~NHSC~PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~  223 (455)
                      ++.+.+...++.+..-+|.+...+    ....+.+|.|.+.++||||.||+.+.|+++.++++|.|+|++||||+|||++
T Consensus       184 ~t~e~f~wA~~~v~SRsf~~~~~~~~~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~  263 (449)
T 3qxy_A          184 RSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQ  263 (449)
T ss_dssp             CCHHHHHHHHHHHHHHCBCCCCC-----CCCCCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSS
T ss_pred             CcHHHHHHHHHHHHHHhcccccCcccccccCCceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCC
Confidence            566666667777777777653221    2246789999999999999999999999999999999999999999999998


Q ss_pred             CCCCHHHHHHHHhccCCeee
Q 012829          224 TAGSTMTRQKALKEQYLFTC  243 (455)
Q Consensus       224 ~~~~~~~R~~~L~~~y~F~C  243 (455)
                      ..      ...|...|||..
T Consensus       264 ~~------n~~ll~~YGF~~  277 (449)
T 3qxy_A          264 MA------NWQLIHMYGFVE  277 (449)
T ss_dssp             CC------HHHHHHHHSCCC
T ss_pred             CC------HHHHHHhCCCCC
Confidence            43      256667999984

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.87  E-value=5.1e-08  Score=83.24  Aligned_cols=113  Identities=12%  Similarity=0.062  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhccc---CCc-------cccHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLY---HPF-------SVNLMQTREKLIKILMELEDWKEALAYCQL  374 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l---~~~-------~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~  374 (455)
                      ..+..+.+.+..++..|++++|+..|.+++.+.....   .|.       ++....++.+++.+|..+|+|++|+.++.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3456677788888999999999999999988743321   122       455667889999999999999999999999


Q ss_pred             hhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829          375 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  430 (455)
Q Consensus       375 ~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp  430 (455)
                      ++.+        .|.....++.+|.++..+|++++|+..+++|+++     .|+++
T Consensus        89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~p~~~  131 (162)
T 3rkv_A           89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-----HPAAA  131 (162)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CGGGH
T ss_pred             HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCCCH
Confidence            9986        2444567999999999999999999999999986     45655

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.86  E-value=5.5e-08  Score=82.57  Aligned_cols=113  Identities=9%  Similarity=0.079  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...+..+...|++++|+..+++++.+     .|.+   ...+.+++.+|..+|+|++|+..+++++.+.     |+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~---~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-----P~  102 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYN---VDYIMGLAAIYQIKEQFQQAADLYAVAFALG-----KN  102 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----CC
Confidence            344566777788999999999999999875     3444   4567889999999999999999999998843     45


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      +|.   .++++|.++..+|++++|+..+++|+++.     |+++........|+
T Consensus       103 ~~~---~~~~lg~~~~~lg~~~eA~~~~~~al~l~-----~~~~~~~~A~~ll~  148 (151)
T 3gyz_A          103 DYT---PVFHTGQCQLRLKAPLKAKECFELVIQHS-----NDEKLKIKAQSYLD  148 (151)
T ss_dssp             CCH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHH
T ss_pred             CcH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHH
Confidence            654   58999999999999999999999999863     66664444444433

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=98.86  E-value=4.4e-10  Score=105.37  Aligned_cols=55  Identities=29%  Similarity=0.476  Sum_probs=42.0

Q ss_pred             ccccCCCCCCCcEEE--EeC------CEEEEEEecccCCCCeeEEeecCCCCCHHHHHHHHhccCCeeeec
Q 012829          183 ISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTC  245 (455)
Q Consensus       183 ~s~~NHSC~PN~~~~--~~~------~~~~v~a~r~I~~GeEi~isY~~~~~~~~~R~~~L~~~y~F~C~C  245 (455)
                      +.++||||+||+...  +..      ..+.++|+|||++|||||++|.+.+++.        ....|.|.|
T Consensus       217 aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~--------~~~~~~C~C  279 (287)
T 3hna_A          217 SRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDI--------KGKLFSCRC  279 (287)
T ss_dssp             GGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHH--------HTTTCCCCC
T ss_pred             hheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCccccc--------CCCcCEeeC
Confidence            557799999999753  321      2789999999999999999998643321        134788888

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=98.84  E-value=1.4e-09  Score=100.42  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=37.9

Q ss_pred             cccccCCCCCCCcEEEE--e---CCEEEEEEecccCCCCeeEEeecCCCCC
Q 012829          182 VISIINHSCLPNAVLVF--E---GRLAVVRAVQHVPKGAEVLISYIETAGS  227 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~~--~---~~~~~v~a~r~I~~GeEi~isY~~~~~~  227 (455)
                      .++++||||+||+...+  +   +..+.++|+|||++|||||++|.....+
T Consensus       186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~~~  236 (261)
T 2f69_A          186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSP  236 (261)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSCC
T ss_pred             ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCcccc
Confidence            35789999999998876  2   2345899999999999999999876653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.82  E-value=1.3e-07  Score=78.88  Aligned_cols=121  Identities=12%  Similarity=0.103  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..+++++.+     .|.+   ...+..++.+|...|++++|+..+++++..     .|.+
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~   85 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALM-----DINE   85 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCC
Confidence            34556677788899999999999998764     3444   455678999999999999999999999884     3456


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  449 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~  449 (455)
                      |.   .++++|.++..+|++++|+..+++|+++.     |++|....+......+...+..+
T Consensus        86 ~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A           86 PR---FPFHAAECHLQLGDLDGAESGFYSARALA-----AAQPAHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             TH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             cH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHHHhc
Confidence            54   47899999999999999999999999864     56777777777777777666654

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=98.82  E-value=1.8e-09  Score=102.37  Aligned_cols=64  Identities=27%  Similarity=0.485  Sum_probs=35.7

Q ss_pred             cccccCCCCCCCcEEEE-eC-------CEEEEEEecccCCCCeeEEeecCCCCCHHH-HHHHHhccCCeeeec
Q 012829          182 VISIINHSCLPNAVLVF-EG-------RLAVVRAVQHVPKGAEVLISYIETAGSTMT-RQKALKEQYLFTCTC  245 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~~-~~-------~~~~v~a~r~I~~GeEi~isY~~~~~~~~~-R~~~L~~~y~F~C~C  245 (455)
                      .+.++||||+||+.+.. .+       ..+.++|+|+|++|||||++|.+..+.... +....+....|.|.|
T Consensus       220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~C  292 (302)
T 1ml9_A          220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC  292 (302)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred             HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeC
Confidence            46789999999997653 22       268999999999999999999887653221 111122234567766

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.82  E-value=1.1e-07  Score=77.28  Aligned_cols=121  Identities=15%  Similarity=0.116  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...+..+...|++++|+..+++++.+.     |.+   ..++.+++.+|...|+|++|+..+++++.+.       
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------   68 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------   68 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence            3456677888889999999999999998752     333   4678889999999999999999999998852       


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                       |.....++.+|.++..+|++++|+..+++|+++-...  ++.|...++...|..+...
T Consensus        69 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           69 -PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHHh
Confidence             3335678999999999999999999999999976333  2234445555566555544

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.78  E-value=2.1e-09  Score=75.51  Aligned_cols=45  Identities=38%  Similarity=0.761  Sum_probs=40.3

Q ss_pred             CCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhh
Q 012829           26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLS   71 (455)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~   71 (455)
                      ....|..|++. .+.+|.+|+.++|||++||..+|..|+.+|..+.
T Consensus        14 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~   58 (60)
T 2dj8_A           14 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS   58 (60)
T ss_dssp             CSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSS
T ss_pred             CCcccccCCCC-CcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhcc
Confidence            46899999984 5899999999999999999999999999998653

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.78  E-value=2.1e-09  Score=73.33  Aligned_cols=46  Identities=30%  Similarity=0.773  Sum_probs=36.9

Q ss_pred             CCCCCCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhH
Q 012829           22 NNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ   68 (455)
Q Consensus        22 ~~~~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~   68 (455)
                      ++......|..|++. .+.+|++|+.++|||.+||..+|..|+.+|.
T Consensus         4 ~~~~~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~   49 (52)
T 2jw6_A            4 DAERKEQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICG   49 (52)
T ss_dssp             -------CCSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTTT
T ss_pred             CccccCCcCCCCCCC-CcCcCCCCCCEeecCHHHHHHHHHHHCHHHc
Confidence            344457899999985 6899999999999999999999999999997

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=98.78  E-value=3.9e-09  Score=99.55  Aligned_cols=45  Identities=22%  Similarity=0.338  Sum_probs=37.5

Q ss_pred             cccccCCCCCCCcEEE--EeC------CEEEEEEecccCCCCeeEEeecCCCC
Q 012829          182 VISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIETAG  226 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~--~~~------~~~~v~a~r~I~~GeEi~isY~~~~~  226 (455)
                      .+.++||||+||+.+.  +.+      ..+.++|+|+|++|||||++|.+..+
T Consensus       213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~  265 (299)
T 1mvh_A          213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD  265 (299)
T ss_dssp             GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred             hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCccc
Confidence            4668999999999863  322      37899999999999999999988765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.77  E-value=4.8e-07  Score=76.72  Aligned_cols=140  Identities=14%  Similarity=0.117  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC---c-cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP---F-SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  380 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~---~-~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  380 (455)
                      .+...+...+..++..|++++|+..|.+++++.......   + .+.-..++.+++.++..+|+|++|+..+.++|.++.
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            355666778888889999999999999999875431100   1 112334889999999999999999999999999865


Q ss_pred             hhcCCCChHHHHHH----HHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          381 RVYPQFHPLLGLQY----YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       381 ~~~g~~hp~~~~~l----~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      +.. +-.|..+..+    ++.|.++..+|++++|+..|++|+++--.--|. -+....+..++++-...+
T Consensus        89 ~~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~-~~~~~~~~~~~~~~~~k~  156 (159)
T 2hr2_A           89 RRG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQL  156 (159)
T ss_dssp             HHC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHHH
T ss_pred             ccc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHh
Confidence            544 4556667777    999999999999999999999999985443332 333445555555444444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.76  E-value=1.4e-07  Score=79.57  Aligned_cols=122  Identities=12%  Similarity=0.121  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...+..+...|++++|+..+++++.+     .|.+   ..++..++.+|...|+|++|+..+++++.+     .|.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~   87 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----DIX   87 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----Cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCC
Confidence            444566777888999999999999998764     3344   455678999999999999999999999874     345


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  449 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~  449 (455)
                      +|   ..++++|.++..+|++++|+..+++|+++.     |++|...++......+...+..+
T Consensus        88 ~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~~l~~~  142 (148)
T 2vgx_A           88 EP---RFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRVSSMLEAIKLK  142 (148)
T ss_dssp             CT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHHHHHHHHC---
T ss_pred             Cc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHHHHHHHHHHhH
Confidence            55   458899999999999999999999998854     45666666666666665555443

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=98.74  E-value=6.9e-09  Score=97.76  Aligned_cols=44  Identities=25%  Similarity=0.465  Sum_probs=36.9

Q ss_pred             cccccCCCCCCCcEEE--E-eC-----CEEEEEEecccCCCCeeEEeecCCC
Q 012829          182 VISIINHSCLPNAVLV--F-EG-----RLAVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~--~-~~-----~~~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      .+.++||||+||+.+.  + ++     ..+.++|+|+|++|||||++|....
T Consensus       215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~  266 (300)
T 2r3a_A          215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKG  266 (300)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGSS
T ss_pred             hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCCc
Confidence            5679999999999874  2 21     3689999999999999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.73  E-value=4.4e-07  Score=75.88  Aligned_cols=133  Identities=14%  Similarity=0.071  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...+..+...|++++|+..+++++++....  ........+...++.++...|++++|++++++++...+..  .+
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~   84 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KD   84 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CC
Confidence            3445556677778899999999999998876542  2344556788899999999999999999999999988765  45


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      .+..+..++++|.++...|++++|+.++++|+++....  .+++....+...+..+...
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHH
Confidence            56678889999999999999999999999999987765  2345555555555555443

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=98.72  E-value=6.4e-09  Score=98.52  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             ccccCCCCCCCcEEEEe-----CCEEEEEEecccCCCCeeEEeecCCC
Q 012829          183 ISIINHSCLPNAVLVFE-----GRLAVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       183 ~s~~NHSC~PN~~~~~~-----~~~~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      ++++||||+|||...+.     +..+.|+|+|||++|||||++|....
T Consensus       241 ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~~  288 (293)
T 1h3i_A          241 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH  288 (293)
T ss_dssp             GGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred             eeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCCC
Confidence            56889999999998762     23358999999999999999996543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.70  E-value=6.1e-07  Score=76.58  Aligned_cols=99  Identities=12%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...+..+...|++++|+..+++++++.     |.   ...++.+++.+|...|+|++|+.++++++.+.       
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------   75 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------   75 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----Cc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Confidence            3455667777888999999999999998752     33   35678889999999999999999999998853       


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                       |.....++++|.++..+|++++|+..+++|+++-
T Consensus        76 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           76 -PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence             3335678999999999999999999999999864

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=98.69  E-value=1.1e-08  Score=96.11  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=38.2

Q ss_pred             cccccCCCCCCCcEEEE---eC--CEEEEEEecccCCCCeeEEeecCCCC
Q 012829          182 VISIINHSCLPNAVLVF---EG--RLAVVRAVQHVPKGAEVLISYIETAG  226 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~~---~~--~~~~v~a~r~I~~GeEi~isY~~~~~  226 (455)
                      .+.++||||+||+.+..   ++  ..+.++|+|+|++|||||++|.+.++
T Consensus       205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~  254 (290)
T 3bo5_A          205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYL  254 (290)
T ss_dssp             GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTT
T ss_pred             chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccc
Confidence            46689999999998753   43  47899999999999999999998764

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=98.68  E-value=1.4e-08  Score=85.33  Aligned_cols=45  Identities=18%  Similarity=0.313  Sum_probs=40.5

Q ss_pred             ccccCCCCCC---CcEEEEeCCEEEEEEecccCCCCeeEEeecCCCCC
Q 012829          183 ISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAGS  227 (455)
Q Consensus       183 ~s~~NHSC~P---N~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~~  227 (455)
                      +.++||||.|   |+...-.++.+.++|+|||++||||++.|.+...|
T Consensus       100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~~~~  147 (149)
T 2qpw_A          100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNP  147 (149)
T ss_dssp             GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred             eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCccCC
Confidence            5689999999   99987778899999999999999999999887654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.65  E-value=1.4e-06  Score=70.16  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ......+..+...|++++|+..+++++...     |.+   ..+...++.++...|++++|+.++++++..... .+..+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~   75 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhH
Confidence            344556677788999999999999988752     233   456788999999999999999999999987653 35566


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +..+..++.+|.++...|++++|+..+++++++
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            677889999999999999999999999999985

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.64  E-value=5.8e-07  Score=87.97  Aligned_cols=128  Identities=9%  Similarity=0.029  Sum_probs=107.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+......|++++|+..+++++++...+  ++.+..+.+...++.+|...|++++|+.++.+++.+++.. +.+++..+.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~  185 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHH
Confidence            6777888999999999999998875443  4456678899999999999999999999999999999876 446788999


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      .++++|.++..+|++++|+.++++|+++....  .+++....+...|..+...
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~  236 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNS  236 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876  4555555666666655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.64  E-value=1.5e-06  Score=76.54  Aligned_cols=124  Identities=10%  Similarity=0.057  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc----------HHHHHHHHHHHHHhcccHHHHHHHHH
Q 012829          304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN----------LMQTREKLIKILMELEDWKEALAYCQ  373 (455)
Q Consensus       304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~----------~~~~~~~L~~~~~~~g~~~~A~~~~~  373 (455)
                      ...+..+...+..+...|++++|+..+++++.+...  .+....          ...++.+++.+|...|+|++|+.+++
T Consensus        35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  112 (198)
T 2fbn_A           35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS  112 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT--CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            345566777888889999999999999999875322  111111          13678899999999999999999999


Q ss_pred             HhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          374 LTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       374 ~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      +++..        +|.....++.+|.++..+|++++|+..+++|+++     .|+++.+...+..+...
T Consensus       113 ~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A          113 KVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHH
T ss_pred             HHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHH
Confidence            99885        2334567899999999999999999999999986     46666555544444433

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=98.62  E-value=1.1e-08  Score=71.82  Aligned_cols=44  Identities=36%  Similarity=0.774  Sum_probs=39.7

Q ss_pred             CCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhh
Q 012829           26 SISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVL   70 (455)
Q Consensus        26 ~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~   70 (455)
                      ....|..|++. .+.+|.+|+.++|||.+||..+|..|+.+|..+
T Consensus        12 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~   55 (60)
T 2od1_A           12 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQT   55 (60)
T ss_dssp             CSSCCTTTSSC-CCEECTTTSCCEESSHHHHHHHHHHHTTTSSCS
T ss_pred             CCCccccCCCc-ccccCCCCCCeeecCHHHHHHHHHHHhHHHccc
Confidence            46899999984 589999999999999999999999999999854

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=98.62  E-value=2.4e-08  Score=72.09  Aligned_cols=45  Identities=38%  Similarity=0.890  Sum_probs=40.6

Q ss_pred             CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHhhhh
Q 012829           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQVLSR   72 (455)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~~~~   72 (455)
                      ...|..|.+. .+.+|.+|+.++|||.+||..+|..|+.+|..+..
T Consensus        15 ~~~C~~C~~~-~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~   59 (70)
T 2d8q_A           15 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ   59 (70)
T ss_dssp             CCBCSSSCCB-CCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred             CCcCCCCCCc-ccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence            5799999985 58899999999999999999999999999986653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.60  E-value=6.6e-07  Score=87.54  Aligned_cols=131  Identities=12%  Similarity=0.182  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      .......+..+...|++++|+..+++++++.... +...+..+.+..+++.+|..+|++++|++++++++.+.+..  ++
T Consensus       143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~  219 (383)
T 3ulq_A          143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CC
Confidence            3445566777788999999999999999886653 33366778899999999999999999999999999998876  57


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      ++..+..++++|.++..+|++++|+.++++|+++.+....  .|....+...|..+
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~  273 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--LPSLPQAYFLITQI  273 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHH
Confidence            7888999999999999999999999999999999877644  13334444444444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.60  E-value=1.5e-06  Score=76.25  Aligned_cols=114  Identities=8%  Similarity=0.048  Sum_probs=95.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..+++++.+....  ...+....+..+++.+|...|++++|++++++++.+.+ -.|..+
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~  103 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA-SLPEDP  103 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCccH
Confidence            344556667778899999999999998876543  23456778889999999999999999999999999887 445455


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      +..+..++++|.++..+|++++|+.++++|+++.+..
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  140 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999999999986543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.59  E-value=2.2e-06  Score=70.11  Aligned_cols=100  Identities=13%  Similarity=0.128  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..+++++.+.     |.   ...++..++.++...|+|++|+.++++++...     +.+
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~   76 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-----PL---VAVYYTNRALCYLKMQQPEQALADCRRALELD-----GQS   76 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----chh
Confidence            344556777788999999999999988752     33   35678889999999999999999999988753     233


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                         ...++.+|.++..+|++++|+..+++|+++-..
T Consensus        77 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           77 ---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence               456899999999999999999999999997655

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=9.8e-07  Score=73.01  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+...+..+...|++++|+..+++++++     .|.+.....++..++.+|...|+|++|+.++++++...     +.+ 
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~-   98 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-----GGD-   98 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----SCC-
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----ccC-
Confidence            3445567778899999999999988753     45555567888899999999999999999999988752     233 


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                        ...++.+|.++..+|++++|+..+++|+++     .|+++.+...+..+
T Consensus        99 --~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~  142 (148)
T 2dba_A           99 --VKALYRRSQALEKLGRLDQAVLDLQRCVSL-----EPKNKVFQEALRNI  142 (148)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHH
Confidence              466889999999999999999999999985     46676555544443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.58  E-value=1.1e-06  Score=73.31  Aligned_cols=111  Identities=20%  Similarity=0.167  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++++....  .+......+..+++.++...|++++|++++++++...+..  .+++
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~  126 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRI  126 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchH
Confidence            45566777888999999999999998876543  3345567788899999999999999999999999987754  3467


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      ..+..+..+|.++..+|++++|..++++|+++.+.
T Consensus       127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999998764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.56  E-value=1.7e-06  Score=81.39  Aligned_cols=130  Identities=10%  Similarity=0.028  Sum_probs=103.7

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+......|++++|+..+++++.+...  ..+....+.+..+++.+|..+|++++|+.++++++..++.. +.+++..+.
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~  197 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVK  197 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCC--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHH
Confidence            344456778999999999999875322  22223456778999999999999999999999999988764 558888999


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                      .++++|.++..+|++++|+.++++|+++....  .+++....+...+..+...+.
T Consensus       198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999988765  345555666666666665555

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.56  E-value=1.1e-06  Score=81.15  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..++..+..++..|++++|+..++++++     ..|.++....++..++.+|...|+|++|+..+++++..+     |.+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~   85 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFT-----YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QID   85 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGG-----GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCC
Confidence            4556677888899999999999988865     357777778899999999999999999999999988854     567


Q ss_pred             hHHHHHHHHHHHHhhh--------cCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWF--------LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       388 p~~~~~l~~La~l~~~--------~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      |.....++.+|.++..        +|++++|+..++++++..     |+++........+.
T Consensus        86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~  141 (261)
T 3qky_A           86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIR  141 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHH
Confidence            7888899999999999        999999999999999853     77777776654443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.54  E-value=2.5e-06  Score=67.17  Aligned_cols=111  Identities=23%  Similarity=0.208  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +..+...+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++...     +.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~   70 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----PD   70 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----cc
Confidence            345566677788899999999999998764     2333   4567789999999999999999999988752     33


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILK  438 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~  438 (455)
                      +   ...++.+|.++..+|++++|...+++++++     +|+++.....+..
T Consensus        71 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~  114 (118)
T 1elw_A           71 W---GKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQLKEGLQN  114 (118)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----CCCCHHHHHHHHH
Confidence            4   456889999999999999999999999874     5666655444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.54  E-value=1e-06  Score=82.95  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=97.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..++++++.... .+..++..+.+..+++.+|..+|+|++|+.++++++.+.+..  ..+
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~  232 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEA-LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSM  232 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcH
Confidence            34556677778899999999999999987544 334667778899999999999999999999999999988754  456


Q ss_pred             hHHHHHHHHHHHHhhhcCC-cHHHHHHHHHHHHhchhc
Q 012829          388 PLLGLQYYTCGKLEWFLGD-TENAIKSMTEAVEILRIT  424 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~-~~eA~~~l~~A~~i~~~~  424 (455)
                      +..+..++++|.++..+|+ +++|+.++++|+.+.+..
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            6789999999999999996 599999999999999865

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.53  E-value=2.3e-06  Score=83.79  Aligned_cols=130  Identities=14%  Similarity=0.176  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc--------cCCccccHHHHHHHHHHHHHhcccHHHHHHH
Q 012829          300 IKKIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALAY  371 (455)
Q Consensus       300 ~~~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~--------l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~  371 (455)
                      .......+..+...+..+...|++++|+..|++++++....        ....++....++.+++.+|..+|+|++|+++
T Consensus       216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  295 (370)
T 1ihg_A          216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS  295 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            34445566777888889999999999999999998853321        0113455677889999999999999999999


Q ss_pred             HHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          372 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       372 ~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      +++++.+        +|..+..++.+|.++..+|++++|+..|++|+++     .|+++.+...+..+...
T Consensus       296 ~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-----~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          296 CLEALEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHH
Confidence            9999984        2444677999999999999999999999999986     36666655554444443

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*

Probab=98.53  E-value=7e-08  Score=96.82  Aligned_cols=89  Identities=20%  Similarity=0.235  Sum_probs=67.3

Q ss_pred             CCCHHHHHHHHhhhhccccccccCCCCcceeeecccccccCCCCCCCc---EEEEe--------CCEEEEEEecccCCCC
Q 012829          147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNA---VLVFE--------GRLAVVRAVQHVPKGA  215 (455)
Q Consensus       147 ~~~~~~i~~~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~---~~~~~--------~~~~~v~a~r~I~~Ge  215 (455)
                      .++.+.+.-.++.+.+.+|...+    ..+.+|.|.+.|+||||.||.   .+.++        ++.++++|.++|++||
T Consensus       158 ~~t~~~f~wA~~~v~SRaf~~~~----~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Ge  233 (440)
T 2h21_A          158 PVTLDDFFWAFGILRSRAFSRLR----NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE  233 (440)
T ss_dssp             CCCHHHHHHHHHHHHHHCBCCC-------CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTS
T ss_pred             CCCHHHHHHHHHHhcccceeccC----CCceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCC
Confidence            35677788888888888886532    236799999999999999874   44433        3468999999999999


Q ss_pred             eeEEeecCCCCCHHHHHHHHhccCCeeee
Q 012829          216 EVLISYIETAGSTMTRQKALKEQYLFTCT  244 (455)
Q Consensus       216 Ei~isY~~~~~~~~~R~~~L~~~y~F~C~  244 (455)
                      ||+|||++.. +    ...|...|||...
T Consensus       234 ei~~sYG~~~-~----N~~LL~~YGFv~~  257 (440)
T 2h21_A          234 QVYIQYDLNK-S----NAELALDYGFIEP  257 (440)
T ss_dssp             BCEECSCTTC-C----HHHHHHHSSCCCS
T ss_pred             EEEEeCCCCC-C----HHHHHHhCCCCcC
Confidence            9999999862 2    1456679999754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.52  E-value=1.5e-06  Score=81.88  Aligned_cols=114  Identities=19%  Similarity=0.152  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc-HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      +..+...+..+...|++++|+..+++++++.... + .+.. ...+..+++.+|..+|+|++|+.++++++.+...  ..
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~-~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~  230 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-H-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--IN  230 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cC
Confidence            3445566777888999999999999999775432 2 2222 3378899999999999999999999999998753  45


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHH-HHHHHHHHHhchhc
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENA-IKSMTEAVEILRIT  424 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA-~~~l~~A~~i~~~~  424 (455)
                      ++..++..++++|.++..+|++++| ..++++|+.+.+..
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            6667889999999999999999999 88899999998765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.50  E-value=2.5e-06  Score=83.36  Aligned_cols=132  Identities=10%  Similarity=0.091  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +......+..+...|++++|+..+++++++.... +...+..+.+..+++.+|...|+|++|++++++++.+.+..  ++
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~  217 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QN  217 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CC
Confidence            3445566777788999999999999999876542 22234678889999999999999999999999999988765  34


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~  444 (455)
                      .+..+..+++||.++..+|++++|+.++++|+++.+..-   +|....+...|..+..
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV---PDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC---ChhHHHHHHHHHHHHH
Confidence            557889999999999999999999999999999988763   3333455555555543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.50  E-value=2e-06  Score=83.96  Aligned_cols=113  Identities=11%  Similarity=0.013  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +......+..+...|++++|+..+++++++....  ........++.+|+.+|..+|++++|+.++++++.+.+..   .
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~  256 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---V  256 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---C
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---C
Confidence            3445566777888999999999999999876543  2344677889999999999999999999999999988876   4


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      +|..+..++++|.++..+|++++|..++++|+++....
T Consensus       257 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          257 PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            45557889999999999999999999999999987765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.49  E-value=1.7e-06  Score=72.94  Aligned_cols=110  Identities=10%  Similarity=-0.072  Sum_probs=88.1

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      +..|..+...|++++|+..+++++++        +|.-..++..++.+|...|++++|+.++++++.+     .|.++  
T Consensus        35 ~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~--   99 (150)
T 4ga2_A           35 FYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-----NPTQK--   99 (150)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCCH--
Confidence            45577788899999999999999875        2334567888999999999999999999999884     24454  


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHH-HHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIK-SMTEAVEILRITHGTNSPFMKELILKLEE  441 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~-~l~~A~~i~~~~~G~~hp~~~~~~~~l~~  441 (455)
                       ..++++|.++...|++++|.. ++++|+++     -|+||.+..+...|-+
T Consensus       100 -~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          100 -DLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             -HHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHH
Confidence             568999999999999987655 56899874     5899987776665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.49  E-value=4e-06  Score=78.94  Aligned_cols=106  Identities=12%  Similarity=-0.067  Sum_probs=88.1

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQ  393 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~  393 (455)
                      +..+...|++++|+..+++++++.... + +......++.+++.+|..+|++++|+.++++++.++...  .+....+..
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~  119 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKA-G-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF  119 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence            344567899999999999999886543 2 234567889999999999999999999999999988653  234456788


Q ss_pred             HHHHHHHhhhc-CCcHHHHHHHHHHHHhchh
Q 012829          394 YYTCGKLEWFL-GDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       394 l~~La~l~~~~-g~~~eA~~~l~~A~~i~~~  423 (455)
                      +.++|.++... |++++|+.++++|+++...
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~  150 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence            99999999996 9999999999999998764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.48  E-value=1.4e-06  Score=92.65  Aligned_cols=92  Identities=21%  Similarity=0.233  Sum_probs=46.4

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      +.+..+...|++++|+..|++++++        ++....++.+|+.+|..+|++++|++++++++++        +|..+
T Consensus        48 nLg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~  111 (723)
T 4gyw_A           48 NLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFA  111 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            3444444555555555555555443        2223344555555555555555555555555543        12223


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ..+++||.++..+|++++|+..+++|++
T Consensus       112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A          112 DAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555555555555555555555554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.46  E-value=2e-06  Score=86.26  Aligned_cols=117  Identities=10%  Similarity=0.056  Sum_probs=98.4

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccC-CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYH-PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~-~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      .+......|++++|++.+++++++.....+ ..++..+.+..+++.+|..+|++++|..++++++.+.+.+.++.++..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            466677889999999999999987654433 3467788899999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhhc--CCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          392 LQYYTCGKLEWFL--GDTENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       392 ~~l~~La~l~~~~--g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                      ..+.++|..+...  +++++|+..+++|+++     .|++|.+..
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~  176 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS  176 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence            8888888766554  5689999999999986     477775543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.46  E-value=3.5e-06  Score=79.27  Aligned_cols=128  Identities=10%  Similarity=0.011  Sum_probs=97.5

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-H
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-G  391 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~  391 (455)
                      .+......|++++|+..+++++.+.....  +....+.+..+++.+|..+|+|++|+.++++++.+.+...  ..+.. .
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~  196 (293)
T 2qfc_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDV  196 (293)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchH
Confidence            45556677899999999999887543322  2233567889999999999999999999999999887543  23333 3


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      ..++++|.++..+|++++|+.++++|+++...  ..++.....+...+..+...+
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHc
Confidence            78999999999999999999999999998743  345555566666665554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.46  E-value=8.8e-06  Score=68.55  Aligned_cols=108  Identities=14%  Similarity=0.095  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      .....+...+..+...|++++|+..+++++++.     |.   -..+...++.++...|+|++|+.++.+++...     
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----   77 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-----PS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD-----   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            345566777888889999999999999988752     22   25667889999999999999999999988852     


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  433 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~  433 (455)
                         |.....++.+|.++..+|++++|+.++++|+++     .|+++...
T Consensus        78 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~  118 (166)
T 1a17_A           78 ---KKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAK  118 (166)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHH
T ss_pred             ---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHH
Confidence               333456899999999999999999999999975     45555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.45  E-value=3.2e-06  Score=74.02  Aligned_cols=115  Identities=10%  Similarity=0.039  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...+..+...|++++|+..+++++.+... .+........+..+++.++...|++++|..++++++...+..  .+
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~  142 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DD  142 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cc
Confidence            344556677788899999999999999887652 333344677888999999999999999999999999886643  23


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      ....+..+..+|.++..+|++++|+.++++|+++.+..
T Consensus       143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            44567888999999999999999999999999998776

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.45  E-value=4.5e-06  Score=81.87  Aligned_cols=133  Identities=12%  Similarity=0.070  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  383 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  383 (455)
                      .....+...+..+...|++++|+..+++++++     .|.++ ....++..++.+|...|++++|+.++++++...+.. 
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-  119 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence            34555667788888999999999999999875     34444 345788899999999999999999999999988776 


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          384 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       384 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                       .++|..+..++.+|.++...|++++|+.++++|+++....  .+++....+...+..+....
T Consensus       120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~  179 (411)
T 4a1s_A          120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAK  179 (411)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred             -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHc
Confidence             4678899999999999999999999999999999998776  35555555665555554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.44  E-value=6.9e-07  Score=71.70  Aligned_cols=102  Identities=12%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  399 (455)
Q Consensus       320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  399 (455)
                      .|++++|+..+++++++     ++.++....++.+++.+|..+|+|++|+.++++++..     .|++   ...++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~   69 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNH---QALRVFYAM   69 (117)
T ss_dssp             ----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---hHHHHHHHH
Confidence            57888999999888753     2335677788999999999999999999999999875     2344   456889999


Q ss_pred             HhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          400 LEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       400 l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                      ++..+|++++|+..+++|+++     .|++|.+......+
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAE-----TSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH-----HCCCHHHHHTHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Confidence            999999999999999999875     36666655544443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.44  E-value=2.7e-06  Score=78.35  Aligned_cols=126  Identities=8%  Similarity=0.068  Sum_probs=101.5

Q ss_pred             HHHHHHHhhh--------cCChHHHHHHHHHHHHHhhcccCCccccHHHHH--------------HHHHHHHHhcccHHH
Q 012829          310 LSKKTLALTS--------CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTR--------------EKLIKILMELEDWKE  367 (455)
Q Consensus       310 l~~~a~~~~~--------~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~--------------~~L~~~~~~~g~~~~  367 (455)
                      +...+..+..        .|++++|+..++++++.     .|.++....+.              ..++.+|...|+|++
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  166 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA  166 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            4445666666        88999999999988764     35566655555              788999999999999


Q ss_pred             HHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc----------CCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829          368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL----------GDTENAIKSMTEAVEILRITHGTNSPFMKELIL  437 (455)
Q Consensus       368 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~----------g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~  437 (455)
                      |+..+++++..+     |+++.....++.+|.++..+          |++++|+..++++++..     |++|.+.+...
T Consensus       167 A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~  236 (261)
T 3qky_A          167 AAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-----PDSPLLRTAEE  236 (261)
T ss_dssp             HHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----CCChHHHHHHH
Confidence            999999988743     46666778899999999877          88899999999998754     89999999998


Q ss_pred             HHHHHHHHHhhhh
Q 012829          438 KLEEAQAEASYKL  450 (455)
Q Consensus       438 ~l~~~~~~~~~~~  450 (455)
                      .|..+..++..-.
T Consensus       237 ~l~~~~~~~~~~~  249 (261)
T 3qky_A          237 LYTRARQRLTELE  249 (261)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            8888877765544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.43  E-value=7.2e-06  Score=65.70  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ...+...+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++.+++..     .+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~   78 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----Ccc
Confidence            445556677778889999999999998765     2222   556788999999999999999999998874     233


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                      +   ...++.+|.++...|++++|+..+++|+++     .|+++..
T Consensus        79 ~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~  116 (131)
T 2vyi_A           79 Y---SKAYGRMGLALSSLNKHVEAVAYYKKALEL-----DPDNETY  116 (131)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHH
T ss_pred             C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CccchHH
Confidence            3   456899999999999999999999999986     4555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.42  E-value=4.1e-06  Score=67.68  Aligned_cols=97  Identities=14%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..++++++.     .|.+   ..+...++.++...|++++|+.++++++...     +.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~   83 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLE-----PTF   83 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCc
Confidence            34455666777899999999999888753     2333   5667889999999999999999999988742     233


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                         ...++.+|.++..+|++++|+.++++++++
T Consensus        84 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           84 ---IKGYTRKAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence               456899999999999999999999999986

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.40  E-value=1.5e-06  Score=70.48  Aligned_cols=94  Identities=10%  Similarity=-0.080  Sum_probs=77.4

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      +..+..+...|++++|+..+++++++        +|.-..++..++.++...|++++|+..+++++.+     .|.++  
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~--   85 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI--   85 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH--
Confidence            34566677889999999999999874        3333567788999999999999999999998884     34454  


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                       ..++.||.++..+|++++|+..+++|+++
T Consensus        86 -~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           86 -AVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             46889999999999999999999999874

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.40  E-value=7.8e-06  Score=72.77  Aligned_cols=107  Identities=11%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHH----------------HHHHHHhcccHHHHHH
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREK----------------LIKILMELEDWKEALA  370 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~----------------L~~~~~~~g~~~~A~~  370 (455)
                      +..+...+..+...|++++|+..+++++++.        |.-..++..                ++.+|...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            3455667788889999999999999988752        222333444                9999999999999999


Q ss_pred             HHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          371 YCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       371 ~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                      .+++++...     |.+   ...++++|.++..+|++++|+..+++|+++     .|+++...-
T Consensus        76 ~~~~al~~~-----p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~  126 (208)
T 3urz_A           76 FYKELLQKA-----PNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANI  126 (208)
T ss_dssp             HHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             HHHHHHHHC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHH
Confidence            999998842     334   466899999999999999999999999985     577765543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.39  E-value=5.2e-06  Score=74.85  Aligned_cols=120  Identities=17%  Similarity=0.143  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+...+..+...|++++|+..+++++..     .|.++....++..++.+|...|+|++|+..+++++..+     |.++
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~   75 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCC
Confidence            4556677788899999999999998763     45666677888999999999999999999999988743     4677


Q ss_pred             HHHHHHHHHHHHhhh------------------cCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWF------------------LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       389 ~~~~~l~~La~l~~~------------------~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      .....++.+|.++..                  +|++++|+..++++++.     -|+++...+....+..+.
T Consensus        76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~  143 (225)
T 2yhc_A           76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLK  143 (225)
T ss_dssp             THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHH
Confidence            777778888888775                  57889999999988774     377887776665555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.38  E-value=1.5e-06  Score=87.18  Aligned_cols=93  Identities=9%  Similarity=-0.097  Sum_probs=81.2

Q ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829          347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  425 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~  425 (455)
                      ..+.+++.|+.++..+|++++|++++++++++.+...+ ..||..+..+.++|.+|..+|++++|+.++++|++|.....
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34566788999999999999999999999999998887 56899999999999999999999999999999999999988


Q ss_pred             CCCChhHHHHHHHH
Q 012829          426 GTNSPFMKELILKL  439 (455)
Q Consensus       426 G~~hp~~~~~~~~l  439 (455)
                      ++.++...++...+
T Consensus       129 ~~~~~~~~~~~~~~  142 (472)
T 4g1t_A          129 SPYRIESPELDCEE  142 (472)
T ss_dssp             CSSCCCCHHHHHHH
T ss_pred             cccchhhHHHHHHH
Confidence            88777665555443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.38  E-value=1.1e-05  Score=75.93  Aligned_cols=128  Identities=16%  Similarity=0.124  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      .+...+..+...|++++|+..++++++.     .|.++ ....+...++.++...|++++|+.++++++...+..  .++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~   79 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ   79 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence            4455677788899999999999999875     34443 345788899999999999999999999999988766  467


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      |..+..+..+|.++...|++++|+.++++|+++....  .+.+....+...+..+...
T Consensus        80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~  135 (338)
T 3ro2_A           80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHA  135 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999988775  3344444455555554443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.37  E-value=7.4e-06  Score=78.96  Aligned_cols=115  Identities=13%  Similarity=0.126  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccC-------CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH-------PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  378 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~-------~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  378 (455)
                      ....+...+..+...|++++|+..|++++.+......       ...+....++.+++.+|..+|+|++|+.++++++.+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4455667788888999999999999999876422100       011233578889999999999999999999999985


Q ss_pred             HHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829          379 YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  433 (455)
Q Consensus       379 ~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~  433 (455)
                      .        |.....++++|.++..+|++++|+..+++|+++     .|+++.+.
T Consensus       226 ~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~a~  267 (336)
T 1p5q_A          226 D--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAK  267 (336)
T ss_dssp             C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHH
T ss_pred             C--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHHH
Confidence            2        334567899999999999999999999999986     45555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.36  E-value=9.6e-06  Score=78.95  Aligned_cols=135  Identities=19%  Similarity=0.132  Sum_probs=109.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++.+....  ..+.....+...++.+|...|++++|+.++++++.+....  .+++
T Consensus       229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~  304 (406)
T 3sf4_A          229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRI  304 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcH
Confidence            44556777788999999999999998875442  3455667888999999999999999999999999988765  3467


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHhhh
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEASYK  449 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~~~  449 (455)
                      ..+..+..+|.++..+|++++|+.++++|+++....  .+.+....+...|.++...+...
T Consensus       305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHh
Confidence            778899999999999999999999999999998776  34455666777777776666544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.35  E-value=8.5e-06  Score=79.06  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=95.6

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +...+..+...|++++|+..+++++.+....  ........+..+++.++...|++++|..++++++...+...++.+|.
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  133 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM  133 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence            3445566677899999999999998875442  22234466778899999999999999999999999999888888899


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      .+..+.++|.++...|++++|+.++++|+++....
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A          134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999987654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.34  E-value=4.6e-06  Score=80.56  Aligned_cols=118  Identities=14%  Similarity=0.144  Sum_probs=88.3

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++++     .|.+   ..++..++.+|...|++++|+.++++++..        +|..
T Consensus       217 ~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~  280 (365)
T 4eqf_A          217 TGLGVLFHLSGEFNRAIDAFNAALTV-----RPED---YSLWNRLGATLANGDRSEEAVEAYTRALEI--------QPGF  280 (365)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence            34456667789999999999999875     2333   557788999999999999999999999885        3444


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH----HHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM----KELILKLEEAQA  444 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~----~~~~~~l~~~~~  444 (455)
                      ...++++|.++..+|++++|+.++++|+++.....|+.|+..    ..+...|..+..
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS  338 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence            677999999999999999999999999999999888876544    334444444433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.33  E-value=4.5e-06  Score=88.74  Aligned_cols=105  Identities=19%  Similarity=0.223  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +..+.+.+..+..+|++++|+..|++++++        ++....++.+|+.+|..+|++++|++++++++++        
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------   72 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------   72 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            445666778888999999999999999876        3445678899999999999999999999999885        


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                      +|..+..+++||.++..+|++++|++.+++|+++     .|+++..
T Consensus        73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~a  113 (723)
T 4gyw_A           73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPAFADA  113 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence            2444667999999999999999999999999975     4555543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.33  E-value=1.2e-05  Score=78.13  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=102.7

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      .+...+..+...|++++|+..+++++++     .|.++ ....++..++.+|...|++++|+.++++++...+..  .++
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~   83 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ   83 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccc
Confidence            4455677778899999999999999875     34444 346788999999999999999999999999988766  467


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      |..+..+..+|.++...|++++|+.++++|+++.....  +.+....+...+..+...
T Consensus        84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~  139 (406)
T 3sf4_A           84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHA  139 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999988762  334444455555544433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.31  E-value=1.8e-06  Score=87.54  Aligned_cols=107  Identities=12%  Similarity=0.059  Sum_probs=86.8

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..|..+...|++++|+..+++++++        ++....++.+++.+|..+|+|++|++++++++.+        +|..+
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~   74 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYI   74 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCH
Confidence            3455567789999999999999876        3334677889999999999999999999999885        45556


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                      ..++++|.++..+|++++|++.+++|+++     .|+++.....+..+
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~l~~~  117 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            77999999999999999999999999986     46666554444433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.31  E-value=1e-05  Score=79.29  Aligned_cols=131  Identities=11%  Similarity=0.051  Sum_probs=104.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+...+..+...|++++|+..+++++++....  ........++..++.+|...|++++|+.++++++......  .+++
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  300 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GERE  300 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHH
Confidence            44556777788999999999999998876542  2345566788899999999999999999999999988765  4566


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      ..+..+..+|.++..+|++++|+.++++|+++....  .+++....+...|..+...
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~  355 (411)
T 4a1s_A          301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHSA  355 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999988776  3344445555555555433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.31  E-value=2.4e-05  Score=62.00  Aligned_cols=102  Identities=21%  Similarity=0.278  Sum_probs=79.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      ....+..+...|++++|+..+++++...     |.+   ..+...++.++...|++++|+.++++++..     .+.+  
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~--   76 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN--   76 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCcc--
Confidence            3445666778899999999999887642     222   456778999999999999999999998864     2233  


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                       ...++.+|.++...|++++|+.++++++++     .|+++..
T Consensus        77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~  113 (125)
T 1na0_A           77 -AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEA  113 (125)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHH
Confidence             456789999999999999999999999875     3555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.29  E-value=9.8e-06  Score=76.85  Aligned_cols=122  Identities=16%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHH
Q 012829          315 LALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQY  394 (455)
Q Consensus       315 ~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l  394 (455)
                      ..+...|++++|+..+++++++.... + +....+.++.+++.+|..+|++++|+.++++++.++...  .+....+..+
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~  119 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANN-R-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMAL  119 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence            44566788888888888888775443 2 234556778888888888889999999888888887642  2334567788


Q ss_pred             HHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          395 YTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       395 ~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      .++|.++.. |++++|+.++++|+++.... | +.+....++..+..+.
T Consensus       120 ~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~-~~~~~~~~~~~lg~~~  165 (307)
T 2ifu_A          120 DRAGKLMEP-LDLSKAVHLYQQAAAVFENE-E-RLRQAAELIGKASRLL  165 (307)
T ss_dssp             HHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-C-ChhHHHHHHHHHHHHH
Confidence            888888888 88889998888888887653 2 1222334444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.29  E-value=2.1e-05  Score=73.66  Aligned_cols=99  Identities=13%  Similarity=0.145  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..+++++++     .|.   ...++.+++.+|..+|+|++|+.++++++.+        +
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~   68 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITR-----NPL---VAVYYTNRALCYLKMQQPEQALADCRRALEL--------D   68 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence            34556677788899999999999999875     233   3566788999999999999999999999874        3


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      |.....++.+|.++..+|++++|+..+++|+++--
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            34456789999999999999999999999998654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.28  E-value=1.5e-05  Score=75.64  Aligned_cols=112  Identities=10%  Similarity=0.022  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+.+.+..+...|++++|+..+++++++.... + .......++.+++.+|.. |++++|+.++++++.+++..  ...
T Consensus        77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~  151 (307)
T 2ifu_A           77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN-G-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERL  151 (307)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-T-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CCh
Confidence            344555666777899999999999998876432 1 123456788899999988 99999999999999988752  233


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      +..+..+.++|.++..+|++++|+.++++|+++....
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            4567889999999999999999999999999987654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.26  E-value=1.9e-05  Score=74.14  Aligned_cols=132  Identities=14%  Similarity=0.086  Sum_probs=104.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++.+....  ........+...++.++...|++++|..++++++.+....  .+++
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~  260 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRA  260 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchh
Confidence            34455666778899999999999998875442  3345567788999999999999999999999999988764  4567


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      ..+..+..+|.++..+|++++|..++++|+++.....  +.+....+...+..+....
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~  316 (338)
T 3ro2_A          261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTAL  316 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHc
Confidence            7788999999999999999999999999999887652  2444455555565554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.24  E-value=2e-05  Score=79.40  Aligned_cols=117  Identities=15%  Similarity=0.214  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccC-------CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYH-------PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  377 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~-------~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  377 (455)
                      .....+...+..++..|++++|+..|++++++....-.       ..+.....++.+++.+|..+|+|++|+.++.+++.
T Consensus       266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            34556667788888999999999999999886422100       01223467888999999999999999999999998


Q ss_pred             hHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          378 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       378 ~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                      +.        |.....++++|.++..+|++++|+..|++|+++     .|+++....
T Consensus       346 ~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-----~P~~~~a~~  389 (457)
T 1kt0_A          346 LD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAARL  389 (457)
T ss_dssp             HS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C----CHHH
T ss_pred             cC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence            53        333567999999999999999999999999985     355554433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.23  E-value=1.2e-05  Score=69.49  Aligned_cols=92  Identities=17%  Similarity=0.104  Sum_probs=73.4

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+......++++.+...+.++..+     .|.+   ..+...++.+|..+|++++|++.+++++..        +|....
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~  142 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIAL-----NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIR  142 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhh
Confidence            345556677888888888777654     2333   456778899999999999999999998875        234456


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .++++|.++..+|++++|+..+++|+++
T Consensus       143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          143 AYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            7899999999999999999999999985

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.21  E-value=1.8e-05  Score=74.40  Aligned_cols=112  Identities=15%  Similarity=0.085  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-ccHHHHHHHHHHhhhhHHhhcCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      ...+.+.+..+...|++++|+..+++++++.... + .......++.+++.+|... |++++|+.++++++.+....-  
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g-~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--  152 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--  152 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--
Confidence            4455667777888899999999999999876432 1 2233467888999999996 999999999999999876321  


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      .++..+..+.++|.++..+|++++|+.++++|+++..
T Consensus       153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  189 (292)
T 1qqe_A          153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            2234467799999999999999999999999998653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.21  E-value=3.4e-05  Score=66.17  Aligned_cols=119  Identities=7%  Similarity=0.014  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHH-HHhcccH--HHHHHHHHHhhhhHHhhcC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKI-LMELEDW--KEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~-~~~~g~~--~~A~~~~~~~l~~~~~~~g  384 (455)
                      ......+..+...|++++|+..+++++++.     |.+   ..+...++.+ +...|++  ++|+.++++++..     .
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-----~  111 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAALATVLYYQASQHMTAQTRAMIDKALAL-----D  111 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-----C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----C
Confidence            344556777788999999999999988753     333   4456778888 8899999  9999999998874     2


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                      |.+   ...++.+|.++...|++++|+..+++|+++     .|+++....++..++.++....
T Consensus       112 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~i~~~~~~~~  166 (177)
T 2e2e_A          112 SNE---ITALMLLASDAFMQANYAQAIELWQKVMDL-----NSPRINRTQLVESINMAKLLQR  166 (177)
T ss_dssp             TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHHHHHhcC
Confidence            344   356889999999999999999999999875     4566667777777777655443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.20  E-value=3.4e-05  Score=73.38  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      +......+..+...|++++|+..+++++...     |.++ ....+...++.++...|++++|+.++++++..       
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------  301 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-------  301 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            3344556777888999999999999987653     3333 34466778999999999999999999999885       


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                       +|.....++.+|.++...|++++|+..+++|+++     .|+++.....+..+.....+
T Consensus       302 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          302 -EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-----NENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHH
T ss_pred             -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHH
Confidence             2333457899999999999999999999999985     57887776666666555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.19  E-value=1.2e-05  Score=62.55  Aligned_cols=94  Identities=17%  Similarity=0.100  Sum_probs=75.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+...|++++|+..+++++++.     |.   ...+...++.++...|++++|+.++++++...     +. .....
T Consensus        12 ~~~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~-~~~~~   77 (112)
T 2kck_A           12 EGVLQYDAGNYTESIDLFEKAIQLD-----PE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-----ED-EYNKD   77 (112)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----CC-TTCHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhC-----cC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cc-cchHH
Confidence            3555678899999999999988752     22   24567789999999999999999999988742     22 01345


Q ss_pred             HHHHHHHHhhhc-CCcHHHHHHHHHHHHh
Q 012829          393 QYYTCGKLEWFL-GDTENAIKSMTEAVEI  420 (455)
Q Consensus       393 ~l~~La~l~~~~-g~~~eA~~~l~~A~~i  420 (455)
                      .++.+|.++..+ |++++|+.++++++..
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            689999999999 9999999999998764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.18  E-value=1.4e-05  Score=71.71  Aligned_cols=97  Identities=14%  Similarity=0.039  Sum_probs=78.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHhhh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----------EDWKEALAYCQLTIP  377 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-----------g~~~~A~~~~~~~l~  377 (455)
                      .....+..+...|++++|+..+++++++        +|....++.+++.++...           |++++|+..+++++.
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            3455667778899999999999999875        233456678899999999           999999999999888


Q ss_pred             hHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          378 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       378 ~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      ..     |.+   ...++++|.++..+|++++|+..+++|+++-
T Consensus       113 ~~-----P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          113 VN-----PRY---APLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hC-----ccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            52     334   3557888999999999999999999988864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.16  E-value=1.2e-05  Score=65.47  Aligned_cols=88  Identities=14%  Similarity=0.102  Sum_probs=68.9

Q ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829          347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  426 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G  426 (455)
                      ..+.+..+|+..+...|+|++|++++.+++.+        +|..+..++++|.++..+|++++|+..+++|+++-... .
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~   76 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-R   76 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-c
Confidence            44566778999999999999999999999985        34445679999999999999999999999999976543 4


Q ss_pred             CCChhHHHHHHHHHHHH
Q 012829          427 TNSPFMKELILKLEEAQ  443 (455)
Q Consensus       427 ~~hp~~~~~~~~l~~~~  443 (455)
                      ..++....+...+..+.
T Consensus        77 ~~~~~~a~~~~~lg~~~   93 (127)
T 4gcn_A           77 ADYKLIAKAMSRAGNAF   93 (127)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            45555555555444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.15  E-value=1e-05  Score=78.07  Aligned_cols=118  Identities=14%  Similarity=0.152  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc--------------HHHHHHHHHHHHHhcccHHHHH
Q 012829          304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN--------------LMQTREKLIKILMELEDWKEAL  369 (455)
Q Consensus       304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~--------------~~~~~~~L~~~~~~~g~~~~A~  369 (455)
                      ...+..+...+..++..|++++|+..|++++.+..     .+..              ...++.+++.+|..+|+|++|+
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-----~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~  250 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-----DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI  250 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-----HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-----cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            44556677788889999999999999999887532     1110              1137789999999999999999


Q ss_pred             HHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          370 AYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       370 ~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                      .++++++...        |.-...++++|.++..+|++++|+..|++|+++     .|+++.+...+..+
T Consensus       251 ~~~~~al~~~--------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-----~p~~~~a~~~L~~l  307 (338)
T 2if4_A          251 GHCNIVLTEE--------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-----APDDKAIRRELRAL  307 (338)
T ss_dssp             HHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHH
Confidence            9999998742        333567999999999999999999999999875     35565555444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.15  E-value=7.3e-05  Score=72.36  Aligned_cols=126  Identities=13%  Similarity=0.056  Sum_probs=99.4

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc-ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      .-.+......|++++|+..+++++...    ++.+ .....+...++.++...|++++|..++++++...+.. | +...
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~   91 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-D-VWHY   91 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-T-CHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-C-cHHH
Confidence            334556677899999999999887643    2332 2355677889999999999999999999999987763 2 3345


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      .+..+.++|.++..+|++++|+.++++|+++.....++.+|....+...+..+
T Consensus        92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  144 (373)
T 1hz4_A           92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  144 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence            67788999999999999999999999999999988888777666655555544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.15  E-value=3.2e-05  Score=74.37  Aligned_cols=123  Identities=17%  Similarity=0.156  Sum_probs=94.2

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      ....+..+...|++++|+..+++++.+     .|.   ...++..++.++...|++++|+.++++++..        +|.
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~  283 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSV-----RPN---DYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPG  283 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            344566667889999999999998875     233   3457788999999999999999999999875        234


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC---ChhHHHHHHHHHHHHHHHhh
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN---SPFMKELILKLEEAQAEASY  448 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~---hp~~~~~~~~l~~~~~~~~~  448 (455)
                      ....++.+|.++..+|++++|+.++++|+++.....|+.   ++...++...|..+...+..
T Consensus       284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence            456789999999999999999999999999887765443   45556666677666655543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.14  E-value=6.8e-05  Score=67.78  Aligned_cols=106  Identities=9%  Similarity=0.073  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      ++..+...+..+...|++++|+..++++++..      .+   ..++..++.++...|++++|+.++++++...... ++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~   73 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RA   73 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-cc
Confidence            34566677888889999999999999998763      12   3567789999999999999999999999977643 45


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      .++..+..++.+|.++...|++++|+.++++|+++.
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  109 (258)
T 3uq3_A           74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH  109 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            667778999999999999999999999999999853

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.14  E-value=4.4e-06  Score=70.35  Aligned_cols=95  Identities=14%  Similarity=0.057  Sum_probs=73.0

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      ...+|++++|+..++++..        .++.-......|+.+|...|+|++|++++++++.+-     |++   ...++.
T Consensus         7 ~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----p~~---~~a~~~   70 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----ERD---PKAHRF   70 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHH
T ss_pred             HHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHH
Confidence            3455677777777666543        234444456789999999999999999999998852     344   456999


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          397 CGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                      +|.++..+|++++|+..+++|+++     .|+++.+
T Consensus        71 lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  101 (150)
T 4ga2_A           71 LGLLYELEENTDKAVECYRRSVEL-----NPTQKDL  101 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHh-----CCCCHHH
Confidence            999999999999999999999985     4666543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.14  E-value=2.7e-05  Score=69.79  Aligned_cols=115  Identities=19%  Similarity=0.116  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc----cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV----NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  383 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~----~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  383 (455)
                      ......+..+...|++++|+..+++++++.     |.++    .+..++..++.++...|++++|+.++++++..     
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----  146 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-----  146 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-----
Confidence            344556777888999999999999998753     3443    23467888999999999999999999999884     


Q ss_pred             CCCChH--HHHHHHHHHHHhhhcCCc---------------------------HHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          384 PQFHPL--LGLQYYTCGKLEWFLGDT---------------------------ENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       384 g~~hp~--~~~~l~~La~l~~~~g~~---------------------------~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                         +|.  ....++++|.++..+|+.                           ++|+.++++|+++     .|+++.+..
T Consensus       147 ---~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~  218 (228)
T 4i17_A          147 ---TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNRTEIKQ  218 (228)
T ss_dssp             ---SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred             ---CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHH
Confidence               455  567788889888888877                           7788888888774     688887766


Q ss_pred             HHHHHH
Q 012829          435 LILKLE  440 (455)
Q Consensus       435 ~~~~l~  440 (455)
                      ++..+.
T Consensus       219 ~l~~i~  224 (228)
T 4i17_A          219 MQDQVK  224 (228)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.12  E-value=2.2e-05  Score=62.32  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc
Q 012829          325 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL  404 (455)
Q Consensus       325 ~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~  404 (455)
                      +++..++++++.     .|.+   ..++..++.+|...|++++|+.++++++...        |.....++.+|.++..+
T Consensus         3 ~a~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLAQ-----GTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHTT-----TCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHc
Confidence            455566666542     2333   4577889999999999999999999998742        33345689999999999


Q ss_pred             CCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          405 GDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       405 g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      |++++|+..+++|+++.... | +.....++...|..+...
T Consensus        67 g~~~~A~~~~~~al~~~~~~-~-~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQSR-G-DQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccc-c-cHHHHHHHHHHHHHhccc
Confidence            99999999999999875443 2 222334455555554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.11  E-value=2.2e-05  Score=69.33  Aligned_cols=105  Identities=11%  Similarity=-0.023  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc-----
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-----  383 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~-----  383 (455)
                      .....+..+...|++++|+..+++++.+.        +....++.+++.+|...|++++|+.++++++......-     
T Consensus        39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  110 (213)
T 1hh8_A           39 ICFNIGCMYTILKNMTEAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK  110 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence            34556677788999999999999988752        23356788899999999999999999999887542110     


Q ss_pred             --C-CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          384 --P-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       384 --g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                        | ..+|.....++++|.++..+|++++|+..+++|+++.
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A          111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence              0 1456667889999999999999999999999999864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.11  E-value=2.3e-05  Score=70.19  Aligned_cols=102  Identities=13%  Similarity=0.026  Sum_probs=82.6

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      ....+..+...|++++|+..+++++++        +|....++..++.++...|++++|+.++++++...     |++  
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~--   72 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-----PRY--   72 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc--
Confidence            345566778899999999999988753        33445678889999999999999999999998742     344  


Q ss_pred             HHHHHHHHHHHhhhc-----------CCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          390 LGLQYYTCGKLEWFL-----------GDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       390 ~~~~l~~La~l~~~~-----------g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                       ...++++|.++..+           |++++|+..+++|+++     .|+++..
T Consensus        73 -~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~  120 (217)
T 2pl2_A           73 -LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL  120 (217)
T ss_dssp             -HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             -HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence             45688999999999           9999999999999986     4666544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.10  E-value=1.2e-05  Score=77.49  Aligned_cols=112  Identities=15%  Similarity=0.146  Sum_probs=93.1

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC---C
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP---Q  385 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g---~  385 (455)
                      .....+..+...|++++|+..+++++++     .|   ....++..++.+|...|++++|+.++++++.......+   .
T Consensus       253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  324 (368)
T 1fch_A          253 LWNKLGATLANGNQSEEAVAAYRRALEL-----QP---GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  324 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence            4455677778889999999999998875     22   33467788999999999999999999999998776533   3


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  428 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~  428 (455)
                      .+|..+..+..+|.++..+|++++|...+.++++++...+|.+
T Consensus       325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  367 (368)
T 1fch_A          325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLP  367 (368)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTCC
T ss_pred             ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCCC
Confidence            4566778899999999999999999999999999999998864

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.08  E-value=5.9e-05  Score=68.16  Aligned_cols=115  Identities=14%  Similarity=0.080  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++.+.     |.+   ..+...++.++...|++++|+.++++++...     +.+ 
T Consensus       141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~-  206 (258)
T 3uq3_A          141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-----PNF-  206 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----ccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----HHH-
Confidence            34455667778899999999999998752     233   4667889999999999999999999998742     233 


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  441 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~  441 (455)
                        ...++.+|.++..+|++++|..++++|+++.....  ..|...++...|..
T Consensus       207 --~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          207 --VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence              46688999999999999999999999999875442  33444455555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.06  E-value=3.7e-05  Score=68.90  Aligned_cols=99  Identities=17%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ..+...+..+...|++++|+..+++++++..    +.+.   .+...++.++...|++++|+.++++++..        +
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKK--------N   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence            3456677788899999999999999987532    1222   45666999999999999999999998863        3


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      |.....++.+|.++..+|++++|+..+++|+++.
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            4456779999999999999999999999999853

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.06  E-value=6.2e-05  Score=67.66  Aligned_cols=125  Identities=9%  Similarity=-0.010  Sum_probs=93.4

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh------------------cccHHHHHH
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME------------------LEDWKEALA  370 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~------------------~g~~~~A~~  370 (455)
                      .+...+..+...|++++|+..++++++.     .|.++....++..++.++..                  +|++++|+.
T Consensus        43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           43 VQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            4556677788899999999999998763     56677666677777777764                  689999999


Q ss_pred             HHHHhhhhHHhhcCCCChHHH--------------HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829          371 YCQLTIPVYQRVYPQFHPLLG--------------LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  436 (455)
Q Consensus       371 ~~~~~l~~~~~~~g~~hp~~~--------------~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~  436 (455)
                      .+++++..+     |+++...              ...+.+|.++...|++++|+..++++++..     |++|...+..
T Consensus       118 ~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~  187 (225)
T 2yhc_A          118 DFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDAL  187 (225)
T ss_dssp             HHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHH
T ss_pred             HHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHH
Confidence            999887744     3444322              222678899999999999999999999854     6677777777


Q ss_pred             HHHHHHHHHHhh
Q 012829          437 LKLEEAQAEASY  448 (455)
Q Consensus       437 ~~l~~~~~~~~~  448 (455)
                      ..+..+..++..
T Consensus       188 ~~l~~~~~~~g~  199 (225)
T 2yhc_A          188 PLMENAYRQMQM  199 (225)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            777766555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.02  E-value=1.4e-05  Score=77.04  Aligned_cols=113  Identities=12%  Similarity=0.125  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++++        ++....++.+++.+|...|++++|+.++++++.+.....++.++
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  320 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV  320 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCccc
Confidence            3455667778889999999999999875        23336678889999999999999999999999999888877665


Q ss_pred             HH----HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829          389 LL----GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  429 (455)
Q Consensus       389 ~~----~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  429 (455)
                      ..    +..+..||.++..+|+.+.|.....+++++++..+|.++
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~  365 (365)
T 4eqf_A          321 PHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP  365 (365)
T ss_dssp             ------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTTTCC-
T ss_pred             chhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhcCCCC
Confidence            44    677889999999999999999999999999999999863

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.02  E-value=0.0001  Score=66.72  Aligned_cols=95  Identities=8%  Similarity=0.036  Sum_probs=57.9

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..+..+...|++++|+..++++++..     |.   ...+...++.+|...|++++|++++++++.      .+.+|...
T Consensus        76 ~la~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~  141 (252)
T 2ho1_A           76 ALAVVFQTEMEPKLADEEYRKALASD-----SR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERS  141 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-----cC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccH
Confidence            33444556667777777666665531     22   234455666667777777777777666655      23445555


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..++.+|.++...|++++|+.++++++++
T Consensus       142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~  170 (252)
T 2ho1_A          142 RVFENLGLVSLQMKKPAQAKEYFEKSLRL  170 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            56666777777777777777777766654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.02  E-value=8.4e-05  Score=67.31  Aligned_cols=114  Identities=12%  Similarity=0.031  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      .......+..+...|++++|+..++++++..        +....++..++.+|...|++++|++++++++...       
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------  101 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------  101 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------
Confidence            4445566777788999999999999988752        2235677889999999999999999999988752       


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                       |.....++.+|.++...|++++|+.+++++++      .+..|....+...+..+
T Consensus       102 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A          102 -SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLV  150 (252)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHH
T ss_pred             -cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHH
Confidence             33356688999999999999999999999987      23344444444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.01  E-value=0.00015  Score=64.00  Aligned_cols=95  Identities=9%  Similarity=0.021  Sum_probs=63.6

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-ccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-EDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ..+..+...|++++|+..+++++..     .|.   ...+...++.++... |++++|+.++++++.      .+.+|..
T Consensus        47 ~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~  112 (225)
T 2vq2_A           47 VRAEIYQYLKVNDKAQESFRQALSI-----KPD---SAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTP  112 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHh-----CCC---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcch
Confidence            3455556667777777777776653     122   234556677777777 777777777777665      2345555


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...++.+|.++...|++++|+.++++++++
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  142 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAA  142 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666777777777788888888877777764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.99  E-value=5.4e-05  Score=69.36  Aligned_cols=103  Identities=12%  Similarity=0.124  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      .......+..+...|++++|+..+++++++     .|   ....++..++.+|...|++++|+.++++++...     +.
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~  109 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAI-----RP---DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----PT  109 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CC---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----cc
Confidence            344455677778899999999999999875     23   334567889999999999999999999998852     23


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  430 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp  430 (455)
                      +   ...++.+|.++...|++++|+..+++|+++     .|+++
T Consensus       110 ~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~  145 (275)
T 1xnf_A          110 Y---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDP  145 (275)
T ss_dssp             C---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             c---cHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCh
Confidence            3   466889999999999999999999999874     45555

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.98  E-value=0.00017  Score=57.55  Aligned_cols=92  Identities=23%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++...     +.+   ..
T Consensus         7 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~   70 (136)
T 2fo7_A            7 LGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRS---AE   70 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTC---HH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHc-----CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----CCc---hH
Confidence            455556678889999888887654     2222   4456678888888999999999888877642     233   34


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .++.+|.++...|++++|+..+.+++++
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            5778899999999999999999988875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.96  E-value=0.00012  Score=65.02  Aligned_cols=115  Identities=17%  Similarity=0.120  Sum_probs=82.1

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH---
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL---  389 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~---  389 (455)
                      .+..+...|++++|+..+++++++     .|.   -..++..++.+|...|++++|+.++++++.+.     |+++.   
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----P~~~~a~~  126 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK-----APN---NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-----ADNLAANI  126 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHH
Confidence            677778899999999999999875     233   35678889999999999999999999988742     33332   


Q ss_pred             -HHHH----------------------------HHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          390 -LGLQ----------------------------YYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       390 -~~~~----------------------------l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                       +|..                            ++.+|..+..+|++++|+..+++|+++.     |+. .....+..+.
T Consensus       127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~-----P~~-~~~~~l~~i~  200 (208)
T 3urz_A          127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF-----PST-EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS-----CCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCH-HHHHHHHHHH
Confidence             1222                            2334555556678888999999988754     433 3455666666


Q ss_pred             HHHHHH
Q 012829          441 EAQAEA  446 (455)
Q Consensus       441 ~~~~~~  446 (455)
                      +++.++
T Consensus       201 ~~~~~~  206 (208)
T 3urz_A          201 RIEKEV  206 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.96  E-value=0.00017  Score=63.61  Aligned_cols=94  Identities=9%  Similarity=-0.029  Sum_probs=76.1

Q ss_pred             HHHHhhhc-CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          313 KTLALTSC-GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       313 ~a~~~~~~-g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      .+..+... |++++|+..+++++.      .+.++....+...++.++...|++++|+.++++++..     .+.+   .
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~  147 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQF---P  147 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---H
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---c
Confidence            45566778 899999998888764      3455666778889999999999999999999988764     2333   4


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..++.+|.++...|++++|..++++++++
T Consensus       148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          148 PAFKELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56888999999999999999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.96  E-value=3.8e-05  Score=59.52  Aligned_cols=70  Identities=24%  Similarity=0.196  Sum_probs=58.1

Q ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          346 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       346 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      |.-..++..++.+|...|+|++|+.++++++...     |.++   ..++.+|.++..+|++++|+..+++|+++...
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-----PDYV---GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            3345567889999999999999999999998742     3333   46899999999999999999999999997544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.95  E-value=5.9e-05  Score=66.55  Aligned_cols=97  Identities=18%  Similarity=0.175  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ....+..+..+...|++++|+..+++++       .+    ...++.+++.+|...|++++|+.++++++...       
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~-------~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------   67 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ-------DP----HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------   67 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS-------SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc-------CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence            3345667778888999999999887662       22    24578889999999999999999999998752       


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                       |.....++++|.++..+|++++|+..+++|+++..
T Consensus        68 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  102 (213)
T 1hh8_A           68 -KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  102 (213)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             -ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence             33356789999999999999999999999998643

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.95  E-value=8.5e-05  Score=69.83  Aligned_cols=100  Identities=10%  Similarity=0.050  Sum_probs=82.5

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-hHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-PLLG  391 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h-p~~~  391 (455)
                      .+..+...|++++|+..+++++++     .|.+   ..+...++.++...|++++|+.++++++.......++.. |...
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALSI-----APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence            456667789999999999888754     2333   466778999999999999999999999998876655433 4556


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..++.+|.++...|++++|+.++++|+++
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            67889999999999999999999999986

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.95  E-value=0.00016  Score=67.69  Aligned_cols=104  Identities=13%  Similarity=0.032  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh---------
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV---------  378 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~---------  378 (455)
                      ..+...|..+...|++++|+..+++++++     .|.+   ..++..|+.++...|++++|+.++++++..         
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~  189 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQL-----SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL  189 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence            34556677788899999999999999875     2344   467888999999999999999998887542         


Q ss_pred             ------------------HHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          379 ------------------YQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       379 ------------------~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                                        +++.+- .+|.-...+++||.++...|++++|+..|.++++.
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence                              111111 13334456899999999999999999999999985

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.94  E-value=0.00017  Score=61.34  Aligned_cols=94  Identities=13%  Similarity=0.026  Sum_probs=71.1

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..++++++.     .|.   ...+...++.++...|++++|.+++++++...     +.+   
T Consensus        46 ~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---  109 (186)
T 3as5_A           46 LHLGIAYVKTGAVDRGTELLERSLAD-----APD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----PIN---  109 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cHh---
Confidence            33455566788999999888888765     222   24556778888889999999999988887642     223   


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...++.+|.++...|++++|+.++++++++
T Consensus       110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A          110 FNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            456788899999999999999999998875

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.93  E-value=9.3e-05  Score=74.76  Aligned_cols=106  Identities=12%  Similarity=0.038  Sum_probs=83.6

Q ss_pred             HHHHHHHhhhc---------CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc--------ccHHHHHHHH
Q 012829          310 LSKKTLALTSC---------GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--------EDWKEALAYC  372 (455)
Q Consensus       310 l~~~a~~~~~~---------g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~--------g~~~~A~~~~  372 (455)
                      +...+..+...         |++++|+..+++++++     .|.   -..++..++.+|...        |++++|+.++
T Consensus       173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~  244 (474)
T 4abn_A          173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVL---DGRSWYILGNAYLSLYFNTGQNPKISQQALSAY  244 (474)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            33445556666         8999999999999875     233   345678899999998        9999999999


Q ss_pred             HHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829          373 QLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  433 (455)
Q Consensus       373 ~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~  433 (455)
                      ++++.+.     |.++.....++++|.++..+|++++|+..+++|+++     .|+++...
T Consensus       245 ~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~a~  295 (474)
T 4abn_A          245 AQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-----DPAWPEPQ  295 (474)
T ss_dssp             HHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred             HHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Confidence            9999862     213366788999999999999999999999999985     46666443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.93  E-value=0.00013  Score=69.40  Aligned_cols=98  Identities=13%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ++.+...+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++..     .|.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~   69 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMD   69 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence            445666778888999999999999998864     2333   467788999999999999999999998875     233


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +   ...++.+|.++...|++++|+..+++++++
T Consensus        70 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  100 (359)
T 3ieg_A           70 F---TAARLQRGHLLLKQGKLDEAEDDFKKVLKS  100 (359)
T ss_dssp             C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred             c---chHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            4   366899999999999999999999999875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.93  E-value=4.2e-05  Score=64.57  Aligned_cols=100  Identities=12%  Similarity=0.084  Sum_probs=72.0

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccH----------HHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDW----------KEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~----------~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      .|++|+..+++++++        +|.-..++.+++.++..++++          ++|+..++++|.+-        |...
T Consensus        17 ~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--------P~~~   80 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--------PKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------TTCH
T ss_pred             HHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------cCcH
Confidence            355677777777654        444556777888888888765          46777777666632        3345


Q ss_pred             HHHHHHHHHhhhcC-----------CcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLG-----------DTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       392 ~~l~~La~l~~~~g-----------~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      ..+++||.+|..+|           ++++|+.++++|+++     .|+++.+...+......
T Consensus        81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHhC
Confidence            66889999998775           899999999999985     67888887766655544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.92  E-value=6.3e-05  Score=61.12  Aligned_cols=75  Identities=11%  Similarity=0.071  Sum_probs=63.9

Q ss_pred             ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          344 FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       344 ~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      -+|..+..+.+++..|...|+|++|++++.+++..        .|.-...++++|.++..+|++++|+..+++|+++   
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---   76 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---   76 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence            36788889999999999999999999999999874        2333467899999999999999999999999985   


Q ss_pred             ccCCCChh
Q 012829          424 THGTNSPF  431 (455)
Q Consensus       424 ~~G~~hp~  431 (455)
                        .|+++.
T Consensus        77 --~p~~~~   82 (126)
T 4gco_A           77 --DSKFIK   82 (126)
T ss_dssp             --CTTCHH
T ss_pred             --hhhhhH
Confidence              555553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.92  E-value=0.00024  Score=70.23  Aligned_cols=117  Identities=17%  Similarity=0.156  Sum_probs=91.6

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc-HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      .....+..+...|++++|+..+++++++     .|.++. ....+..++.++...|++++|+.++++++..        +
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~  325 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------E  325 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence            3345577778889999999999998764     344443 3567888999999999999999999998875        2


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      |.....++.+|.++...|++++|+..+++|+++     .|+++.+...+..+....
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~  376 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQQIREGLEKAQRLL  376 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHh
Confidence            334467899999999999999999999999984     577776666555544443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.91  E-value=6.8e-05  Score=68.73  Aligned_cols=98  Identities=15%  Similarity=0.050  Sum_probs=67.3

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +...|..+...|++++|+..+++++++     .|.++.   +...++.+|...|++++|+.++++++.     .|.+...
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~   72 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPY---IYNRRAVCYYELAKYDLAQKDIETYFS-----KVNATKA   72 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCST---THHHHHHHHHHTTCHHHHHHHHHHHHT-----TSCTTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHHHhhHHHHHHHHHHHHh-----ccCchhH
Confidence            345566677778888888888777653     233332   455677778888888888888777766     1223333


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .+..++.+|.++...|++++|++++++|+++
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~  103 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR  103 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            4666778888888888888888888888774

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.91  E-value=9.7e-05  Score=69.46  Aligned_cols=104  Identities=14%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829          319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  398 (455)
Q Consensus       319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  398 (455)
                      ..|++++|+..++++++.     .|.   -..++.+++.++..+|+|++|..++++++..     .|++|.+   ++++|
T Consensus       178 ~~~~~~eA~~~~~~~l~~-----~p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~---l~~l~  241 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADK-----CSP---TLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPET---LINLV  241 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHH-----SCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH---HHHHH
T ss_pred             CchHHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHH
Confidence            457899999999988764     333   3556788999999999999999999999874     3566654   89999


Q ss_pred             HHhhhcCCcHH-HHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          399 KLEWFLGDTEN-AIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       399 ~l~~~~g~~~e-A~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                      .++..+|+.++ +..+++++++     ..|+||.+.++..+.....
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~-----~~P~~~~~~d~~~~~~~fd  282 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKD-----AHRSHPFIKEYRAKENDFD  282 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence            99999999976 5688888876     4799999999877665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.90  E-value=0.00015  Score=57.93  Aligned_cols=93  Identities=23%  Similarity=0.302  Sum_probs=73.7

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++...     +.+   .
T Consensus        40 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~  103 (136)
T 2fo7_A           40 NLGNAYYKQGDYDEAIEYYQKALEL-----DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PRS---A  103 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTC---H
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHH-----CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCC---h
Confidence            3455566778999999999888764     2222   3456788999999999999999999888742     233   3


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..++.+|.++...|++++|..++.+++++
T Consensus       104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A          104 EAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            56788999999999999999999999875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.89  E-value=0.0001  Score=66.07  Aligned_cols=110  Identities=14%  Similarity=0.059  Sum_probs=82.3

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++++.     |.   ...+...++.++...|++++|+.++++++...     +.+   
T Consensus       129 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---  192 (243)
T 2q7f_A          129 YMLGTVLVKLEQPKLALPYLQRAVELN-----EN---DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-----PGH---  192 (243)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-----TTC---
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-----Cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----ccc---
Confidence            334556677899999999998887652     22   24467788999999999999999999887642     233   


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  441 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~  441 (455)
                      ...++.+|.++..+|++++|+.++++++++     .|+++.....+..|..
T Consensus       193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          193 ADAFYNAGVTYAYKENREKALEMLDKAIDI-----QPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CcchHHHHHHHHHHHh
Confidence            446889999999999999999999999874     5777776666555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.84  E-value=0.00013  Score=75.37  Aligned_cols=96  Identities=17%  Similarity=-0.017  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++++     .|.   ...++.+++.+|..+|++++|++++++++...     +.+ 
T Consensus        25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-   90 (568)
T 2vsy_A           25 AWLMLADAELGMGDTTAGEMAVQRGLAL-----HPG---HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-----PEH-   90 (568)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-
Confidence            3445566777889999999999998764     233   35677889999999999999999999998852     333 


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                        ...++++|.++..+|++++|+..+++|+++
T Consensus        91 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~  120 (568)
T 2vsy_A           91 --PGIALWLGHALEDAGQAEAAAAAYTRAHQL  120 (568)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              567899999999999999999999999986

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.84  E-value=0.0001  Score=69.32  Aligned_cols=114  Identities=14%  Similarity=0.203  Sum_probs=87.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc-ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      ....+..+...|++++|+..+++++.+....-.+.. +....+...++.+|...|++++|+.++++++...     +.+ 
T Consensus       196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~-  269 (330)
T 3hym_B          196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQN-  269 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC-
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----ccc-
Confidence            345566677889999999999999887654433322 3345677889999999999999999999998752     233 


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  436 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~  436 (455)
                        ...++.+|.++..+|++++|+.++++|+++     .|+++.....+
T Consensus       270 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l  310 (330)
T 3hym_B          270 --ASTYSAIGYIHSLMGNFENAVDYFHTALGL-----RRDDTFSVTML  310 (330)
T ss_dssp             --SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-----CSCCHHHHHHH
T ss_pred             --hHHHHHHHHHHHHhccHHHHHHHHHHHHcc-----CCCchHHHHHH
Confidence              456889999999999999999999999874     46666544433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.84  E-value=0.00025  Score=60.91  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=75.1

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH----------
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ----------  380 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~----------  380 (455)
                      .+.+..+...|++++|+..+++++++     .|++   ..++..++.+|...|++++|+..+.+++....          
T Consensus         9 ~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T 3vtx_A            9 MDIGDKKRTKGDFDGAIRAYKKVLKA-----DPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG   80 (184)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            34466667788899998888888764     2333   45667788888888888888777766543211          


Q ss_pred             -----------------hhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHH
Q 012829          381 -----------------RVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       381 -----------------~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~  443 (455)
                                       +.. ..+|.-...+..+|.++..+|++++|+..+++++++     .|+++   ++...+..+.
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~lg~~~  151 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAI-ALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-----KPGFI---RAYQSIGLAY  151 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----cchhh---hHHHHHHHHH
Confidence                             000 012222344667788888888888888888888875     34443   4444455444


Q ss_pred             HHH
Q 012829          444 AEA  446 (455)
Q Consensus       444 ~~~  446 (455)
                      .++
T Consensus       152 ~~~  154 (184)
T 3vtx_A          152 EGK  154 (184)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.84  E-value=0.00017  Score=70.05  Aligned_cols=94  Identities=20%  Similarity=0.221  Sum_probs=66.8

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++++     .|.+   ..+...++.++...|++++|+.++++++..        +|..
T Consensus       275 ~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~  338 (388)
T 1w3b_A          275 CNLANALKEKGSVAEAEDCYNTALRL-----CPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEF  338 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh-----Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCc
Confidence            34455556667788888777777654     2333   345667778888888888888888777763        3444


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...++++|.++...|++++|+..+++|+++
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          339 AAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            566788888888888888888888888864

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.83  E-value=0.00034  Score=65.49  Aligned_cols=119  Identities=12%  Similarity=-0.030  Sum_probs=86.5

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      ....+..+...|++++|+..+++++++     .|.   ...+...++.++...|++++|+.++++++...     +.+  
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~--  239 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVEL-----RPD---DAQLWNKLGATLANGNRPQEALDAYNRALDIN-----PGY--  239 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC--
Confidence            344556667889999999999998765     233   34567889999999999999999999988742     233  


Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh----hHHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP----FMKELILKLEEAQA  444 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp----~~~~~~~~l~~~~~  444 (455)
                       ...++.+|.++..+|++++|+..+++|+++....-++.+.    ....+...+..+..
T Consensus       240 -~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (327)
T 3cv0_A          240 -VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN  297 (327)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence             4568899999999999999999999999876554333321    13444445554443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.82  E-value=7.9e-05  Score=69.98  Aligned_cols=114  Identities=11%  Similarity=0.028  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-  387 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h-  387 (455)
                      .....+..+...|++++|+..++++++..     |.   ...+...++.+|...|++++|+.++++++.......+..+ 
T Consensus       208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  279 (327)
T 3cv0_A          208 LWNKLGATLANGNRPQEALDAYNRALDIN-----PG---YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE  279 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence            34456667778899999999999987652     22   3456778999999999999999999999887654333222 


Q ss_pred             ---hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829          388 ---PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  430 (455)
Q Consensus       388 ---p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp  430 (455)
                         ......+..+|.++..+|++++|...+++|++++...+|.++.
T Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  325 (327)
T 3cv0_A          280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSM  325 (327)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTSSCC
T ss_pred             chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhHHHh
Confidence               1256778999999999999999999999999999998887653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.82  E-value=0.00018  Score=61.11  Aligned_cols=95  Identities=16%  Similarity=0.135  Sum_probs=76.8

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++..     .|.+   ..+...++.++...|++++|+.++++++...     +.+   
T Consensus        80 ~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---  143 (186)
T 3as5_A           80 TVLGLTYVQVQKYDLAVPLLIKVAEA-----NPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-----PNE---  143 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----ccc---
Confidence            44566667789999999999888765     2233   4567789999999999999999999988742     233   


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      ...++.+|.++...|++++|..++++++++.
T Consensus       144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          144 GKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4668899999999999999999999998764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.80  E-value=1.9e-05  Score=61.72  Aligned_cols=97  Identities=14%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +......+..+...|++++|+..+++++++     .|.+   ..++.+++.++..+|++++|++++++++...    |.+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT----STA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC----SST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCc
Confidence            344556777888999999999999999875     2333   4667889999999999999999999998743    322


Q ss_pred             -C-hHHHHHHHHHHHHhhhcCCcHHHHHHHH
Q 012829          387 -H-PLLGLQYYTCGKLEWFLGDTENAIKSMT  415 (455)
Q Consensus       387 -h-p~~~~~l~~La~l~~~~g~~~eA~~~l~  415 (455)
                       . ...+..++.+|.++..+|++++|+..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence             1 2236778899999999988877765443

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}

Probab=97.80  E-value=1.9e-05  Score=66.42  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=38.5

Q ss_pred             cccccCCCCCC---CcEEEEeCCEEEEEEecccCCCCeeEEeecCCCC
Q 012829          182 VISIINHSCLP---NAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAG  226 (455)
Q Consensus       182 ~~s~~NHSC~P---N~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~  226 (455)
                      .+.++||||.|   |+...-.++.+.++|+|+|++||||++-|++.+.
T Consensus        97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y~  144 (151)
T 3db5_A           97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYA  144 (151)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC---
T ss_pred             ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHHH
Confidence            46799999965   9988888999999999999999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.79  E-value=1.4e-05  Score=80.88  Aligned_cols=110  Identities=13%  Similarity=-0.011  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      .......+..+...|++++|+..+++++++        ++....++.+++.+|..+|++++|++++++++...     +.
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~  106 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PH  106 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Confidence            344566777888999999999999999875        33345678899999999999999999999998752     33


Q ss_pred             ChHHHHHHHHHHHH--hhhcCCcHHHHHHHH-----------HHHHhchhccCCCChhH
Q 012829          387 HPLLGLQYYTCGKL--EWFLGDTENAIKSMT-----------EAVEILRITHGTNSPFM  432 (455)
Q Consensus       387 hp~~~~~l~~La~l--~~~~g~~~eA~~~l~-----------~A~~i~~~~~G~~hp~~  432 (455)
                      ++   ..+..++.+  +..+|++++|++.++           +|+++-....|+.++..
T Consensus       107 ~~---~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  162 (477)
T 1wao_1          107 DK---DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG  162 (477)
T ss_dssp             CT---THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred             CH---HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccc
Confidence            33   345566666  888899999999999           88888888889988864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.78  E-value=8.1e-05  Score=64.00  Aligned_cols=103  Identities=14%  Similarity=0.075  Sum_probs=76.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH---------
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ---------  380 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~---------  380 (455)
                      +...+..+...|++++|+..+++++++        +|.-..++..++.++...|++++|+.++++++....         
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~   80 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA   80 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence            345566677889999999998887664        334456788899999999999999998887754310         


Q ss_pred             -----hhcCC------------CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          381 -----RVYPQ------------FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       381 -----~~~g~------------~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                           ...+.            .+|.-...++.+|.++...|++++|+..+++++++
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  137 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV  137 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence                 00111            13444566888999999999999999999999874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.78  E-value=0.00045  Score=61.77  Aligned_cols=94  Identities=15%  Similarity=0.027  Sum_probs=72.6

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..++++++..     |.+   ..+...++.++...|++++|+.++++++...     +.+   
T Consensus        95 ~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---  158 (243)
T 2q7f_A           95 YGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-----END---  158 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTC---
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----Ccc---
Confidence            445566677889999999888887642     222   3456778889999999999999998887642     233   


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...++.+|.++...|++++|+..++++++.
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          159 TEARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            346788999999999999999999999875

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.78  E-value=0.00023  Score=53.06  Aligned_cols=72  Identities=21%  Similarity=0.288  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCC
Q 012829          348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGT  427 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~  427 (455)
                      .......++.++...|++++|+.++++++...     +.+   ...++.+|.++...|++++|+.++++|+++     .|
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p   74 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DP   74 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CC
Confidence            45667789999999999999999999998742     233   456889999999999999999999999986     35


Q ss_pred             CChhH
Q 012829          428 NSPFM  432 (455)
Q Consensus       428 ~hp~~  432 (455)
                      +++..
T Consensus        75 ~~~~~   79 (91)
T 1na3_A           75 NNAEA   79 (91)
T ss_dssp             TCHHH
T ss_pred             CCHHH
Confidence            55543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.78  E-value=0.00018  Score=72.55  Aligned_cols=96  Identities=15%  Similarity=0.074  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhhhcCCh-HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          308 NILSKKTLALTSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~-~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ..+...+..+...|++ ++|+..+++++++        ++....++..|+.+|...|++++|++++++++...       
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------  167 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-------  167 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------
Confidence            3445567777888999 9999999999875        23345678899999999999999999999998753       


Q ss_pred             ChHHHHHHHHHHHHhhhc---------CCcHHHHHHHHHHHHh
Q 012829          387 HPLLGLQYYTCGKLEWFL---------GDTENAIKSMTEAVEI  420 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~---------g~~~eA~~~l~~A~~i  420 (455)
                       |. ...++++|.++..+         |++++|+..+++|+++
T Consensus       168 -p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  208 (474)
T 4abn_A          168 -KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM  208 (474)
T ss_dssp             -CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence             22 37789999999999         9999999999999986

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.00026  Score=54.97  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  428 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~  428 (455)
                      ......++..+...|+|++|++++++++..     .|.+   ...++++|.++..+|++++|+..+++|+++.     |+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence            455678899999999999999999999885     2334   4568999999999999999999999999753     44


Q ss_pred             C---hhHHHHHHHHHHHHHHHh
Q 012829          429 S---PFMKELILKLEEAQAEAS  447 (455)
Q Consensus       429 h---p~~~~~~~~l~~~~~~~~  447 (455)
                      +   .....+...+..+...+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVG   92 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Confidence            4   122445555555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.0011  Score=65.09  Aligned_cols=117  Identities=15%  Similarity=0.009  Sum_probs=97.6

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++.+|...++.++......  .+++..+.+...++.+|...|+|++|..++++++.+..... ..+...
T Consensus       139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~  215 (434)
T 4b4t_Q          139 IKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTV  215 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHH
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHH
Confidence            344666778899999999999887765432  34577888999999999999999999999999999877654 345567


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCCh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSP  430 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp  430 (455)
                      +..+..+|.++...|++++|..++.+|++.....-..++.
T Consensus       216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          216 AELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            8889999999999999999999999999999888776665

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.70  E-value=0.00019  Score=70.39  Aligned_cols=61  Identities=7%  Similarity=-0.075  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ++.+++.++..+|++++|+..+++++.+        .|.-...++++|.++..+|++++|+..+++|++
T Consensus       168 a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~  228 (382)
T 2h6f_A          168 VWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  228 (382)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3344444444444444444444444431        122223445555555555555555555555555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00051  Score=67.62  Aligned_cols=128  Identities=8%  Similarity=0.055  Sum_probs=79.3

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      ++...+..+...|++++|.+.+++++.+...+  +.......++..++.++...|++++|+.+++.++.+.....  ..+
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~  132 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVF  132 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccH
Confidence            44555666677888888888888777765432  11222333445555666666777777777777777666543  334


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      ..+..+.+||.++...|++++|.+++++++.+....  .+++...++...+..+
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~  184 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKV  184 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHH
Confidence            456667777777777777777777777777665544  2344444444444333

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.69  E-value=0.00017  Score=65.90  Aligned_cols=91  Identities=9%  Similarity=-0.068  Sum_probs=74.2

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829          318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  397 (455)
Q Consensus       318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  397 (455)
                      ..+|++++|+..++++++.    .+..++....+...++.++...|++++|+.++++++..     .+.+   ...++.+
T Consensus        16 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~l   83 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILAS----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDM---PEVFNYL   83 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCC---HHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhc----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCc---HHHHHHH
Confidence            3456788899888887653    22334567788899999999999999999999999885     2333   4568999


Q ss_pred             HHHhhhcCCcHHHHHHHHHHHHh
Q 012829          398 GKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       398 a~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      |.++...|++++|+.++++|+++
T Consensus        84 a~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           84 GIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhc
Confidence            99999999999999999999986

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.69  E-value=0.00044  Score=67.07  Aligned_cols=61  Identities=18%  Similarity=0.162  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ++..++.++...|++++|++++++++...     |.+   ...++.+|.++...|++++|+..+++|++
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLC-----PTH---ADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34445555555555555555555544421     122   23344555555555555555555555544

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}

Probab=97.67  E-value=4e-05  Score=65.48  Aligned_cols=45  Identities=20%  Similarity=0.269  Sum_probs=38.3

Q ss_pred             cccccCCCCC---CCcEEEEeCCEEEEEEecccCCCCeeEEeecCCCC
Q 012829          182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETAG  226 (455)
Q Consensus       182 ~~s~~NHSC~---PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~~  226 (455)
                      .+.++||+|.   +|+...-.++.+.++|+|+|++||||++-|.+.+.
T Consensus       101 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y~  148 (170)
T 3ep0_A          101 WMTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSHN  148 (170)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC---
T ss_pred             eeeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHHH
Confidence            3578899997   89988778899999999999999999999998753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.64  E-value=0.00035  Score=70.15  Aligned_cols=99  Identities=11%  Similarity=0.016  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      .+..+...+..+...|++++|+..+++++...     |+    ..++..++.++...|++++|+..+++++..     . 
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~-   69 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-----K-   69 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C-
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----C-
Confidence            45667778888899999999999999998753     32    567888999999999999999999998874     2 


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                        |.....++.+|.++..+|++++|+..+++++.+-
T Consensus        70 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  103 (514)
T 2gw1_A           70 --PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG  103 (514)
T ss_dssp             --SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             --hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence              3334668899999999999999999999998754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.64  E-value=0.00014  Score=71.27  Aligned_cols=92  Identities=9%  Similarity=0.067  Sum_probs=56.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+...|++++|+..+++++++        ++.-..++.+++.++..+|+|++|+.++++++.+        +|.-..
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~  235 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNS  235 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHH
Confidence            344445556666666666666553        2223445666777777777777777777777763        233345


Q ss_pred             HHHHHHHHhhh-cCCcHHH-----HHHHHHHHHh
Q 012829          393 QYYTCGKLEWF-LGDTENA-----IKSMTEAVEI  420 (455)
Q Consensus       393 ~l~~La~l~~~-~g~~~eA-----~~~l~~A~~i  420 (455)
                      .++++|.++.. .|..++|     +.++++|+.+
T Consensus       236 a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l  269 (382)
T 2h6f_A          236 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL  269 (382)
T ss_dssp             HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            56777777777 4444666     3667777664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.63  E-value=0.00029  Score=56.40  Aligned_cols=84  Identities=12%  Similarity=-0.014  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      ...++..+...|+|++|+.++++++...     |.++.....++.+|.++...|++++|+..++++++.     .|+++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~   74 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK   74 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc
Confidence            4567888999999999999999887743     577777788999999999999999999999999884     477766


Q ss_pred             HHHHHHHHHHHHHH
Q 012829          432 MKELILKLEEAQAE  445 (455)
Q Consensus       432 ~~~~~~~l~~~~~~  445 (455)
                      ..+..-.+..+..+
T Consensus        75 ~~~~~~~la~~~~~   88 (129)
T 2xev_A           75 AAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            65655555555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.61  E-value=0.00017  Score=60.66  Aligned_cols=75  Identities=9%  Similarity=-0.017  Sum_probs=63.3

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      +|.-..++..++..+...|+|++|+.++++++..     .|.+|   ..++++|.++..+|++++|+..+++|+++    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~---~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV---DYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            5666778899999999999999999999998874     34554   56899999999999999999999999985    


Q ss_pred             cCCCChhH
Q 012829          425 HGTNSPFM  432 (455)
Q Consensus       425 ~G~~hp~~  432 (455)
                       .|++|..
T Consensus       100 -~P~~~~~  106 (151)
T 3gyz_A          100 -GKNDYTP  106 (151)
T ss_dssp             -SSSCCHH
T ss_pred             -CCCCcHH
Confidence             4666644

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.61  E-value=0.00043  Score=68.41  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      .......+..+...|++++|+..+++++..     .|.   -..+...++.+|...|++++|+.++++++...       
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------   90 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------   90 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence            445556677778899999999999998764     233   36677889999999999999999999988752       


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                       |.....++.+|.++..+|++++|+..+++++++
T Consensus        91 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  123 (450)
T 2y4t_A           91 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS  123 (450)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence             333567889999999999999999999999874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.60  E-value=0.00067  Score=56.64  Aligned_cols=101  Identities=12%  Similarity=0.002  Sum_probs=78.4

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++++.     |.   ...+...++.++...|++++|+.++++++..     .+.++
T Consensus        49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~  115 (166)
T 1a17_A           49 YYGNRSLAYLRTECYGYALGDATRAIELD-----KK---YIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDK  115 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCH
Confidence            34556677788899999999999988752     33   3456788999999999999999999998874     23444


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      . +..++.++..+...|++++|+..+.++..++..
T Consensus       116 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          116 D-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence            3 344566677788899999999999998887643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.59  E-value=0.00034  Score=63.95  Aligned_cols=94  Identities=12%  Similarity=0.143  Sum_probs=61.4

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++++     .|.+   ..+...++.+|...|++++|+.++++++..        +|..
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~  141 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDR-----DTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--------TTTD  141 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------SCCC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc-----Cccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------CCCc
Confidence            34555666778888888888887764     2223   245667888888888888888888887764        2333


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...++++|...+..+++++|+..+++|+++
T Consensus       142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  171 (272)
T 3u4t_A          142 PKVFYELGQAYYYNKEYVKADSSFVKVLEL  171 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344666663344444666666666666654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.59  E-value=0.00073  Score=69.45  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=87.0

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCcccc-HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVN-LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~-~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      ....+..+...|++++|+..+++++++....  +.++. ...++..++.+|...|++++|++++++++...     |.++
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~  550 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TNDA  550 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCh
Confidence            3445666778899999999999988764321  22333 36788899999999999999999999988752     3444


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELI  436 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~  436 (455)
                         ..++.+|.++...|++++|+.++++++++     .|+++.....+
T Consensus       551 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~l  590 (597)
T 2xpi_A          551 ---NVHTAIALVYLHKKIPGLAITHLHESLAI-----SPNEIMASDLL  590 (597)
T ss_dssp             ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCChHHHHHH
Confidence               56899999999999999999999999985     57776554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.58  E-value=0.00016  Score=60.53  Aligned_cols=75  Identities=13%  Similarity=0.127  Sum_probs=61.7

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      ++.-......++..+...|+|++|+.++++++..     .|.++   ..++++|.++..+|++++|+..+++|+++    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   84 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS---RFFLGLGACRQAMGQYDLAIHSYSYGAVM----   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3555667888999999999999999999998874     33444   55789999999999999999999999985    


Q ss_pred             cCCCChhH
Q 012829          425 HGTNSPFM  432 (455)
Q Consensus       425 ~G~~hp~~  432 (455)
                       .|++|..
T Consensus        85 -~p~~~~~   91 (148)
T 2vgx_A           85 -DIXEPRF   91 (148)
T ss_dssp             -STTCTHH
T ss_pred             -CCCCchH
Confidence             4666654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.53  E-value=0.0011  Score=67.99  Aligned_cols=105  Identities=13%  Similarity=0.093  Sum_probs=79.1

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGL  392 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~  392 (455)
                      +..+...|++++|+..+++++++     .|.+   ..++..++.+|...|++++|++++++++......  +.+|. .+.
T Consensus       448 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~  517 (597)
T 2xpi_A          448 GMQHMQLGNILLANEYLQSSYAL-----FQYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAA  517 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH-----CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHH
Confidence            44455567777777777776653     2333   3457789999999999999999999998876542  33454 477


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  433 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~  433 (455)
                      .+..+|.++...|++++|+..+++++++     +|+++.+.
T Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~  553 (597)
T 2xpi_A          518 TWANLGHAYRKLKMYDAAIDALNQGLLL-----STNDANVH  553 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSCCHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHH
Confidence            8999999999999999999999999986     46665443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.50  E-value=0.00063  Score=70.07  Aligned_cols=98  Identities=10%  Similarity=-0.113  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++++     .|.+   ..++.+++.+|...|++++|++++++++...     +.+ 
T Consensus        59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~-  124 (568)
T 2vsy_A           59 AVARLGRVRWTQQRHAEAAVLLQQASDA-----APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLL-----PEE-  124 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-
Confidence            3455677778889999999999999875     2333   5677889999999999999999999988752     233 


Q ss_pred             HHHHHHHHHHHHhhhc---CCcHHHHHHHHHHHHhch
Q 012829          389 LLGLQYYTCGKLEWFL---GDTENAIKSMTEAVEILR  422 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~---g~~~eA~~~l~~A~~i~~  422 (455)
                        ...++++|.++..+   |++++|...+++|++.-.
T Consensus       125 --~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          125 --PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             --HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence              45688999999999   999999999999987643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.49  E-value=0.00088  Score=62.81  Aligned_cols=102  Identities=14%  Similarity=0.005  Sum_probs=74.4

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..+..+...|++++|+..++++++.     +|.+. .......+...+...|++++|+..+++++..    .| .+   .
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----~p-~~---~  200 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQ-----DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK----CS-PT---L  200 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----SC-CC---H
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----CC-Cc---H
Confidence            3455567889999999999998765     24432 2222222334445569999999999998874    33 33   4


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                      ..++++|.++..+|++++|+..+++|+++     .|++|.+
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~  236 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPET  236 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence            56899999999999999999999999975     3666644

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.47  E-value=0.00061  Score=57.36  Aligned_cols=74  Identities=14%  Similarity=0.079  Sum_probs=63.0

Q ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC----------ChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829          347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF----------HPLLGLQYYTCGKLEWFLGDTENAIKSMTE  416 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~----------hp~~~~~l~~La~l~~~~g~~~eA~~~l~~  416 (455)
                      ..+......+..+...|+|++|+.++.+++.......+..          .|..+..++++|.++..+|++++|+..+.+
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            4456677889999999999999999999999877654322          456678899999999999999999999999


Q ss_pred             HHHh
Q 012829          417 AVEI  420 (455)
Q Consensus       417 A~~i  420 (455)
                      |+++
T Consensus        89 al~~   92 (162)
T 3rkv_A           89 VLKR   92 (162)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.00081  Score=53.78  Aligned_cols=64  Identities=19%  Similarity=0.067  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...+..++..+...|+|++|+.++++++...        |.-...++++|.++..+|++++|+..+++|+++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4566778899999999999999999998752        333467999999999999999999999999986

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.45  E-value=0.0004  Score=59.35  Aligned_cols=95  Identities=9%  Similarity=0.072  Sum_probs=70.5

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      +...|++++|+..++++++.     .|.   -..+...++.+|...|++++|+.++++++...     +.+   ...++.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA-----NPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GEN---AELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH-----CCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSC---HHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh-----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC---HHHHHH
Confidence            34567888898888888764     233   34567889999999999999999999988754     234   346788


Q ss_pred             HHHH-hhhcCCc--HHHHHHHHHHHHhchhccCCCChhH
Q 012829          397 CGKL-EWFLGDT--ENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       397 La~l-~~~~g~~--~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                      +|.+ +...|++  ++|+..+++|+++     .|+++..
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~  117 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL-----DSNEITA  117 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh-----CCCcHHH
Confidence            9999 7899999  9999999999986     4555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.45  E-value=0.0012  Score=55.80  Aligned_cols=75  Identities=12%  Similarity=0.049  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC----C-ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ----F-HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~----~-hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      .....+++..+...|+|++|+..++++|.+-.. +|.    + .|..+..++++|.++..+|++++|+..+.+|++++.+
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            444567888899999999999999999997654 221    1 2345668999999999999999999999999997433


Q ss_pred             c
Q 012829          424 T  424 (455)
Q Consensus       424 ~  424 (455)
                      .
T Consensus        90 ~   90 (159)
T 2hr2_A           90 R   90 (159)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.44  E-value=0.0014  Score=48.63  Aligned_cols=81  Identities=17%  Similarity=0.160  Sum_probs=61.5

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++++     .|.+   ..+...++.++...|++++|+.++++++...     |.+ 
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~~-   76 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN-   76 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----CCC-
Confidence            3445566677889999999999998865     2333   4567789999999999999999999988742     344 


Q ss_pred             HHHHHHHHHHHHhhhcC
Q 012829          389 LLGLQYYTCGKLEWFLG  405 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g  405 (455)
                        ...+.++|.++..+|
T Consensus        77 --~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           77 --AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --HHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHhcC
Confidence              345778888876654

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}

Probab=97.41  E-value=0.00012  Score=63.95  Aligned_cols=44  Identities=16%  Similarity=0.221  Sum_probs=39.0

Q ss_pred             cccccCCCCC---CCcEEEEeCCEEEEEEecccCCCCeeEEeecCCC
Q 012829          182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       182 ~~s~~NHSC~---PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      .+.++||+|.   +|+...-.++.+.++|+|+|++||||++-|.+.+
T Consensus       131 WmRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~Y  177 (196)
T 3dal_A          131 WMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDF  177 (196)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred             eEEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHHH
Confidence            3578999996   7998887899999999999999999999998653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.41  E-value=0.0021  Score=49.96  Aligned_cols=84  Identities=10%  Similarity=-0.075  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      ...|+..+...|+|..|...++.++.....--. .-+.....+..||..+..+|++++|..++++|++     +.|+|+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~~~   81 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHH
Confidence            457899999999999999999999887643211 1133456789999999999999999999999987     4788877


Q ss_pred             HHHHHHHHHH
Q 012829          432 MKELILKLEE  441 (455)
Q Consensus       432 ~~~~~~~l~~  441 (455)
                      +..-+.-++.
T Consensus        82 ~~~n~~~~~~   91 (104)
T 2v5f_A           82 ANGNLKYFEY   91 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHhhHHHHHH
Confidence            6544444444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.41  E-value=0.0011  Score=63.43  Aligned_cols=101  Identities=10%  Similarity=-0.008  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      .....+.+..+...|++++|+..+++++++.     |   ....++.+++.+|..+|++++|+.++++++.+.     |.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-----p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~  262 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-----S---NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PN  262 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CC
Confidence            4556677888889999999999999998762     3   335678899999999999999999999998852     33


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHH-HHHHHHHHhchh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAI-KSMTEAVEILRI  423 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~-~~l~~A~~i~~~  423 (455)
                      +   ...+..+|.++..+|++++|. ..+++.+..+..
T Consensus       263 ~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          263 N---KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4   356889999999999999984 466666655443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.41  E-value=0.0012  Score=52.43  Aligned_cols=87  Identities=10%  Similarity=0.027  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN  428 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~  428 (455)
                      ......++..+...|+|++|+.++.+++...     +.+   ...++.+|.++...|++++|+.++++|+++... .+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~   74 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-----PTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NRED   74 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchh
Confidence            4566788999999999999999999988752     233   456889999999999999999999999987653 2445


Q ss_pred             ChhHHHHHHHHHHHHH
Q 012829          429 SPFMKELILKLEEAQA  444 (455)
Q Consensus       429 hp~~~~~~~~l~~~~~  444 (455)
                      ++....+...+..+..
T Consensus        75 ~~~~~~~~~~la~~~~   90 (131)
T 1elr_A           75 YRQIAKAYARIGNSYF   90 (131)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5444555555555443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.0021  Score=64.27  Aligned_cols=117  Identities=14%  Similarity=0.068  Sum_probs=88.6

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh---cccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME---LEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~---~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ....+..+...|++++|+..+++++.+....  +.......+...++.++..   .|++++|+.++++++...     +.
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~  447 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-----PR  447 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-----cc
Confidence            3455677788899999999999988764321  1111223467789999999   999999999999988742     33


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  441 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~  441 (455)
                      +   ...++.+|.++...|++++|..++++|+++     .|+++.....+.-++.
T Consensus       448 ~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          448 S---EQAKIGLAQMKLQQEDIDEAITLFEESADL-----ARTMEEKLQAITFAEA  494 (514)
T ss_dssp             C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSHHHHHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHH
Confidence            3   456889999999999999999999999985     5777776665544443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.38  E-value=0.0012  Score=55.72  Aligned_cols=68  Identities=10%  Similarity=0.044  Sum_probs=58.4

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +......+..++..+...|+|++|+.++++++...        |.....++++|.++..+|++++|+..+++|+++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34556778889999999999999999999998853        333567999999999999999999999999986

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.37  E-value=0.00077  Score=68.14  Aligned_cols=94  Identities=12%  Similarity=0.150  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      ....+...+..+...|++++|+..+++++..     .|.+   ..++..++.+|..+|++++|+..+++++..     .|
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p   90 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-----DPNE---PVFYSNISACYISTGDLEKVIEFTTKALEI-----KP   90 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC
Confidence            4566777888899999999999999999875     2333   467888999999999999999999999874     23


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHH
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMT  415 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~  415 (455)
                      .+   ...++.+|.++..+|++++|+..++
T Consensus        91 ~~---~~~~~~la~~~~~~g~~~~A~~~~~  117 (537)
T 3fp2_A           91 DH---SKALLRRASANESLGNFTDAMFDLS  117 (537)
T ss_dssp             TC---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ch---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34   4568899999999999999999884

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.35  E-value=0.0013  Score=54.10  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=61.5

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      ++.-......++..+...|+|++|+.++++++..     .|.++   ..++.+|.++..+|++++|+..+++|+++    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA---RYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4555667788999999999999999999998863     33444   55889999999999999999999999985    


Q ss_pred             cCCCChhH
Q 012829          425 HGTNSPFM  432 (455)
Q Consensus       425 ~G~~hp~~  432 (455)
                       .|++|..
T Consensus        82 -~p~~~~~   88 (142)
T 2xcb_A           82 -DINEPRF   88 (142)
T ss_dssp             -CTTCTHH
T ss_pred             -CCCCcHH
Confidence             4666654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.31  E-value=0.00063  Score=71.92  Aligned_cols=94  Identities=9%  Similarity=-0.064  Sum_probs=68.7

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .....+..+...|++++|+..+++++++        ++.-..++.+++.+|..+|++++|++.+++++...     |++ 
T Consensus       435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P~~-  500 (681)
T 2pzi_A          435 LPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-----PGE-  500 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC-
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-
Confidence            4455677778889999999999998875        23345678889999999999999999999988743     222 


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                        ...++++|.++..+|++++ +..|++|++
T Consensus       501 --~~~~~~lg~~~~~~g~~~~-~~~~~~al~  528 (681)
T 2pzi_A          501 --LAPKLALAATAELAGNTDE-HKFYQTVWS  528 (681)
T ss_dssp             --SHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred             --hHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence              2345566666666666666 666666665

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.30  E-value=0.0018  Score=49.21  Aligned_cols=68  Identities=26%  Similarity=0.336  Sum_probs=54.9

Q ss_pred             HHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829          354 KLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMK  433 (455)
Q Consensus       354 ~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~  433 (455)
                      ..+..+...|+|++|+.++++++..     .+.++.  ..++.+|.++..+|++++|+..+++|+++     .|+++...
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT-----EPVGKD--EAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHH
Confidence            4677889999999999999998874     234432  16889999999999999999999999975     56666443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.29  E-value=0.0016  Score=51.94  Aligned_cols=71  Identities=13%  Similarity=0.041  Sum_probs=60.6

Q ss_pred             CCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          342 HPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       342 ~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .+..+.....+..++..+...|+|++|+.++++++...     +.+   ...++.+|.++...|++++|+..+++|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            44567777888999999999999999999999988742     233   566899999999999999999999999985

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.29  E-value=0.0024  Score=51.02  Aligned_cols=69  Identities=10%  Similarity=-0.051  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      ...++..+...|++++|+..+++++...     |.+   ...++.+|.++...|++++|+..+++|+++     .|+++.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~   86 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-----PER---EEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIA   86 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Confidence            4567888999999999999999988742     334   456889999999999999999999999985     566665


Q ss_pred             HH
Q 012829          432 MK  433 (455)
Q Consensus       432 ~~  433 (455)
                      ..
T Consensus        87 ~~   88 (121)
T 1hxi_A           87 VH   88 (121)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.29  E-value=0.0021  Score=58.88  Aligned_cols=80  Identities=16%  Similarity=0.103  Sum_probs=49.2

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  395 (455)
Q Consensus       320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  395 (455)
                      .+++++|+..++++.++.          -..+...|+.+|..    .+++++|+.++++++..       .+   ...++
T Consensus        55 ~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~  114 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCA  114 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------CC---ccHHH
Confidence            556666666666555431          23455566666666    66666666666666553       12   24566


Q ss_pred             HHHHHhhh----cCCcHHHHHHHHHHHH
Q 012829          396 TCGKLEWF----LGDTENAIKSMTEAVE  419 (455)
Q Consensus       396 ~La~l~~~----~g~~~eA~~~l~~A~~  419 (455)
                      +||.++..    .+++++|+.++++|++
T Consensus       115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~  142 (273)
T 1ouv_A          115 SLGGIYHDGKVVTRDFKKAVEYFTKACD  142 (273)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence            67777776    7777777777777766

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.27  E-value=0.0023  Score=64.64  Aligned_cols=94  Identities=18%  Similarity=0.094  Sum_probs=61.7

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++++|+..+++++.+.     |.   ...++..++.++...|++++|+.++++++...     +.++  
T Consensus       280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~--  344 (537)
T 3fp2_A          280 IFLALTLADKENSQEFFKFFQKAVDLN-----PE---YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-----PENV--  344 (537)
T ss_dssp             HHHHHHTCCSSCCHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCS--
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhccC-----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCH--
Confidence            344555566677777777777766531     22   23456667777777788888877777776632     2333  


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                       ..++.+|.++...|++++|+..+++++++
T Consensus       345 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~  373 (537)
T 3fp2_A          345 -YPYIQLACLLYKQGKFTESEAFFNETKLK  373 (537)
T ss_dssp             -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             44667777777777777777777777765

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.26  E-value=0.0019  Score=52.65  Aligned_cols=70  Identities=16%  Similarity=0.061  Sum_probs=60.5

Q ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          346 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       346 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +........++..+...|+|++|+.++++++..     .++++.....++++|.++...|++++|+..+++++++
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            445667778899999999999999999998874     3456667888999999999999999999999999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.23  E-value=0.00048  Score=72.83  Aligned_cols=95  Identities=13%  Similarity=0.041  Sum_probs=73.1

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829          318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  397 (455)
Q Consensus       318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  397 (455)
                      ...|++++|++.++++++.....-...++....++..++.+|..+|++++|++.+++++...     +++   ...++++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-----GWR---WRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CCC---HHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----cch---HHHHHHH
Confidence            56789999999998887321111222234445667789999999999999999999998752     333   4678999


Q ss_pred             HHHhhhcCCcHHHHHHHHHHHHh
Q 012829          398 GKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       398 a~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      |.++..+|++++|+..+++|+++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l  496 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT  496 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999985

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.17  E-value=0.0023  Score=51.57  Aligned_cols=67  Identities=16%  Similarity=0.079  Sum_probs=57.1

Q ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          346 VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       346 ~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +........++..+...|+|++|+.++++++...     +.+   ...++++|.++..+|++++|+..+++|+++
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLV---AVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-----cCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3445677889999999999999999999988852     233   467899999999999999999999999985

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}

Probab=97.16  E-value=0.00028  Score=59.14  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=39.4

Q ss_pred             cccccCCCCC---CCcEEEEeCCEEEEEEecccCCCCeeEEeecCCC
Q 012829          182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       182 ~~s~~NHSC~---PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      .+.++||+|.   +|+...-.++.+.++|+|+|++||||++-|.+.+
T Consensus        96 Wmr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~y  142 (152)
T 3ihx_A           96 WMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASY  142 (152)
T ss_dssp             GGGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred             ceeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHHH
Confidence            4589999998   7999888889999999999999999999998754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.08  E-value=0.0058  Score=56.73  Aligned_cols=97  Identities=10%  Similarity=-0.061  Sum_probs=73.9

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccH-HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNL-MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~-~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      +..+...+..++|++|+..++.+.      -.+ ++.. ..+...|+.++..+|++++|+.++++++.      |+.-|.
T Consensus       139 ~~~a~l~~~~~r~~dA~~~l~~a~------~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~  205 (282)
T 4f3v_A          139 WMKAVVYGAAERWTDVIDQVKSAG------KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA  205 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTGG------GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHhh------ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc
Confidence            334456678899999998875331      112 2322 45788999999999999999999998763      332255


Q ss_pred             -HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          390 -LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       390 -~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                       ....++++|.++..+|+.++|...|++++++
T Consensus       206 ~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          206 CARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence             5567899999999999999999999999884

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.04  E-value=0.0012  Score=50.77  Aligned_cols=62  Identities=11%  Similarity=0.102  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +...++.++...|++++|+.++++++...     +.+   ...++++|.++..+|++++|+..+++|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PEE---SKYWLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34568888999999999999999988742     233   356889999999999999999999999986

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.02  E-value=0.0045  Score=48.74  Aligned_cols=68  Identities=15%  Similarity=0.169  Sum_probs=56.9

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .+........++..+...|++++|+.++++++...        |.....++.+|.++...|++++|+..+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            34455667788999999999999999999988742        223567889999999999999999999999985

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.02  E-value=0.0055  Score=56.04  Aligned_cols=89  Identities=19%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             HHHHHhhh----cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhc
Q 012829          312 KKTLALTS----CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVY  383 (455)
Q Consensus       312 ~~a~~~~~----~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~  383 (455)
                      ..+..+..    .+++++|+..++++.+.       .   ...+..+|+.+|..    .+++++|+.++++++..     
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----  143 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-----  143 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-----
Confidence            34555566    88999999998888753       1   24678889999999    99999999999998873     


Q ss_pred             CCCChHHHHHHHHHHHHhhh----cCCcHHHHHHHHHHHHh
Q 012829          384 PQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI  420 (455)
Q Consensus       384 g~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~~A~~i  420 (455)
                        .+   ...++++|.++..    .+++++|+.++++|++.
T Consensus       144 --~~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          144 --ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             --TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             --Cc---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence              13   3467889999998    99999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.01  E-value=0.0023  Score=59.75  Aligned_cols=71  Identities=14%  Similarity=-0.004  Sum_probs=57.5

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      +|.-..++.+|+.+|...|++++|++.+++++...    | .+ .-+..+.+||.++..+|+.++|...+++++..+
T Consensus       215 ~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~----p-~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~~  285 (287)
T 3qou_A          215 NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD----L-TA-ADGQTRXTFQEILAALGTGDALASXYRRQLYAL  285 (287)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-TG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----c-cc-ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence            34445678899999999999999999999988842    2 22 115668899999999999999999999998753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.00  E-value=0.0046  Score=57.40  Aligned_cols=90  Identities=13%  Similarity=0.054  Sum_probs=68.5

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-HH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-GL  392 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~  392 (455)
                      |..+...|++++|.+++..+..     .+|.+.    ..+.++.++...++|++|+.+++.+..       ..+|.. ..
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~-----~~p~~~----~~~~~a~l~~~~~r~~dA~~~l~~a~~-------~~d~~~~~~  172 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPV-----AGSEHL----VAWMKAVVYGAAERWTDVIDQVKSAGK-------WPDKFLAGA  172 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCC-----TTCHHH----HHHHHHHHHHHTTCHHHHHHHHTTGGG-------CSCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh-----cCCchH----HHHHHHHHHHHcCCHHHHHHHHHHhhc-------cCCcccHHH
Confidence            4445677899999887654432     233333    678888999999999999999875433       125654 45


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ..+.||.++..+|++++|+..|++|..
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            889999999999999999999999974

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.95  E-value=0.0053  Score=47.85  Aligned_cols=64  Identities=22%  Similarity=0.332  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..+...++..+...|++++|++++++++...     +.+   ...++.+|.++...|++++|+.++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            4567788999999999999999999988742     233   456889999999999999999999999875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.95  E-value=0.006  Score=47.04  Aligned_cols=64  Identities=13%  Similarity=0.104  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ......++..+...|+|++|+.++++++...     +.+   ...++.+|.++...|++++|+..+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            4556778899999999999999999988742     333   456889999999999999999999999986

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}

Probab=96.91  E-value=0.00073  Score=60.31  Aligned_cols=44  Identities=16%  Similarity=0.095  Sum_probs=39.4

Q ss_pred             cccccCCCCC---CCcEEEEeCCEEEEEEecccCCCCeeEEeecCCC
Q 012829          182 VISIINHSCL---PNAVLVFEGRLAVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       182 ~~s~~NHSC~---PN~~~~~~~~~~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      .+.++||+|.   +|+...-.++.+.++|+|+|++||||++-|.+.+
T Consensus       140 WmRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y  186 (237)
T 3ray_A          140 WMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDY  186 (237)
T ss_dssp             GGGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred             ceeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHH
Confidence            4579999996   7988888899999999999999999999998765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.86  E-value=0.0041  Score=53.06  Aligned_cols=67  Identities=13%  Similarity=-0.055  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          348 LMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      -..++..++.++...|++++|+.++++++..    .|. +. -...++++|.++..+|+.++|+..+++++.-
T Consensus       107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~-~~-~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          107 NFELACELAVQYNQVGRDEEALELLWNILKV----NLG-AQ-DGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTT-TT-TTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----Ccc-cC-hHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            3466788999999999999999999988763    221 11 1245788999999999999999999999864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.84  E-value=0.0027  Score=48.14  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHH-HHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQ-TREKLIKILMELEDWKEALAYCQLTIPV  378 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~-~~~~L~~~~~~~g~~~~A~~~~~~~l~~  378 (455)
                      +.+..+...|++++|+..++++++.     .|.+   .. ++..++.+|...|++++|+.++++++..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT-----EPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----CSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4566677889999999999998774     2333   34 7788999999999999999999999874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.84  E-value=0.0019  Score=51.09  Aligned_cols=62  Identities=19%  Similarity=0.095  Sum_probs=48.5

Q ss_pred             hcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhH
Q 012829          361 ELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFM  432 (455)
Q Consensus       361 ~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~  432 (455)
                      .+|++++|+.++++++..     +..+|.....++++|.++..+|++++|+..+++|+++     .|+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchHH
Confidence            468999999999998873     3446888899999999999999999999999999986     4666543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.74  E-value=0.004  Score=57.84  Aligned_cols=64  Identities=20%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...+..++..+...|+|++|+.++++++..        +|.....++++|.++..+|++++|+..+++|+++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            455677899999999999999999999885        2334567899999999999999999999999975

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.73  E-value=0.022  Score=47.45  Aligned_cols=87  Identities=14%  Similarity=0.066  Sum_probs=70.3

Q ss_pred             cHHHHHHHHHHHHHhcc---cHHHHHHHHHHhhhhHHhhcCCCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          347 NLMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g---~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      ...++..+++.++...+   +.++++.+++.++..       ++| ...-.+|.||..++.+|+|++|..++++++++  
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence            45677888888888876   777888888776662       245 45677999999999999999999999999884  


Q ss_pred             hccCCCChhHHHHHHHHHHHHHH
Q 012829          423 ITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       423 ~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                         -|+|+...++...+++...+
T Consensus       101 ---eP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A          101 ---EPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHHHH
Confidence               58999999988888876543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.72  E-value=0.0054  Score=61.41  Aligned_cols=90  Identities=6%  Similarity=-0.041  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ....+.+..+...|++++|+..+++++++.     |.   ...++.+++.+|..+|+|++|+..+++++.+        .
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-----p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~  381 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-----SA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------N  381 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence            444567777888899999999999998752     33   3567889999999999999999999999874        2


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIKS  413 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~~  413 (455)
                      |.-...+..++.++..+|++++|.+.
T Consensus       382 P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          382 PQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345688899999999999888764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.71  E-value=0.0071  Score=46.30  Aligned_cols=63  Identities=14%  Similarity=0.082  Sum_probs=51.5

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  380 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  380 (455)
                      ....+..+...|++++|+..+++++++     .|.+   ..++..++.+|...|++++|++.+++++.+..
T Consensus        10 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A           10 RYALAQEHLKHDNASRALALFEELVET-----DPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            445667778899999999999999875     2333   34678899999999999999999999988654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.68  E-value=0.0052  Score=53.39  Aligned_cols=89  Identities=10%  Similarity=-0.108  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH  387 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h  387 (455)
                      ......+..+...|++++|+..+++++++     .|   ....++..++.+|..+|++++|+.++++++.+     .|.+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~  155 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-----DK---NNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNN  155 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----ST---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----Cc---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc
Confidence            44556677788899999999999999875     23   33567888999999999999999999998875     2344


Q ss_pred             hHHHHHHHHHHHHhhhcCCcHHHHH
Q 012829          388 PLLGLQYYTCGKLEWFLGDTENAIK  412 (455)
Q Consensus       388 p~~~~~l~~La~l~~~~g~~~eA~~  412 (455)
                         ...+..++.++..+++.+++.+
T Consensus       156 ---~~~~~~l~~~~~~~~~~~~~~~  177 (198)
T 2fbn_A          156 ---LDIRNSYELCVNKLKEARKKDK  177 (198)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHC---
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHH
Confidence               4557788888888888777763

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.62  E-value=0.0071  Score=58.73  Aligned_cols=72  Identities=15%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhh--------cCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRV--------YPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~--------~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...+..++..+...|+|++|+.++++++......        ....+|..+..++++|.++..+|++++|+.++++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            4456678899999999999999999999866542        11256777889999999999999999999999999985

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.60  E-value=0.018  Score=53.99  Aligned_cols=83  Identities=11%  Similarity=0.036  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhh
Q 012829          324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  403 (455)
Q Consensus       324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~  403 (455)
                      ++|+..++++++.    ++|.+   ..+...++..+...|++++|...+++++.+     +|.++..  .+.++|.++..
T Consensus        81 ~~A~~~~~rAl~~----~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~~~~~~~~~~~  146 (308)
T 2ond_A           81 DEAANIYERAIST----LLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTL--VYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHTT----TTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCccH--HHHHHHHHHHH
Confidence            7888888887652    23433   345677888888999999999999998873     4455532  57778888888


Q ss_pred             cCCcHHHHHHHHHHHHh
Q 012829          404 LGDTENAIKSMTEAVEI  420 (455)
Q Consensus       404 ~g~~~eA~~~l~~A~~i  420 (455)
                      .|++++|+..+++|+++
T Consensus       147 ~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          147 AEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHCHHHHHHHHHHHHTS
T ss_pred             hcCHHHHHHHHHHHHhc
Confidence            89999999999988864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.52  E-value=0.0093  Score=52.69  Aligned_cols=31  Identities=10%  Similarity=-0.156  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHhhh----cCCcHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  419 (455)
Q Consensus       389 ~~~~~l~~La~l~~~----~g~~~eA~~~l~~A~~  419 (455)
                      .....+++||.++..    .+++++|+.++++|.+
T Consensus       123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A          123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            345555555555555    5555555555555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.49  E-value=0.017  Score=43.83  Aligned_cols=82  Identities=9%  Similarity=0.012  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHhccc---HHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829          350 QTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  426 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G  426 (455)
                      ..+..++.++...++   .++|..++++++.     .-|.++   -.++.+|.++...|++++|+.+|+++++.     .
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-----~dp~~~---rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-----~   73 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-----LEPYNE---AALSLIANDHFISFRFQEAIDTWVLLLDS-----N   73 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-----HCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHTC-----C
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----HCcCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C
Confidence            344456666654444   6899999999888     334554   55778899999999999999999999874     3


Q ss_pred             CCChhHHHHHHHHHHHHH
Q 012829          427 TNSPFMKELILKLEEAQA  444 (455)
Q Consensus       427 ~~hp~~~~~~~~l~~~~~  444 (455)
                      |+.|-...+...+++++.
T Consensus        74 p~~~~~~~i~~~I~~A~~   91 (93)
T 3bee_A           74 DPNLDRVTIIESINKAKK   91 (93)
T ss_dssp             CTTCCHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHh
Confidence            446666677777776654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.33  E-value=0.049  Score=53.16  Aligned_cols=126  Identities=7%  Similarity=0.034  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc-cCCc-c------------ccHHHHHHHHHHHHHhcccHHHHHHH
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL-YHPF-S------------VNLMQTREKLIKILMELEDWKEALAY  371 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~-l~~~-~------------~~~~~~~~~L~~~~~~~g~~~~A~~~  371 (455)
                      +++.+...+......|+.+++...+++++.+.+.- ++.. .            -....+...++..+...|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34444445555556678888888888888876442 2211 1            11223445566777888999999988


Q ss_pred             HHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC-ChhHHHHHHHH
Q 012829          372 CQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILKL  439 (455)
Q Consensus       372 ~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~-hp~~~~~~~~l  439 (455)
                      ++.++..        ||.--..+..|-.++...|+..+|+..|++..+.+...+|-+ .|.++++...+
T Consensus       194 l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~i  254 (388)
T 2ff4_A          194 LEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERI  254 (388)
T ss_dssp             HHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             HHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            8877552        343333455556678899999999999999999999999976 77777766553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.31  E-value=0.0072  Score=57.81  Aligned_cols=95  Identities=7%  Similarity=-0.136  Sum_probs=51.6

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      ...+.+..+...|++++|+..+++++++     .|   ....++.+++.+|..+|+|++|+.++++++.+.     |.++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-----p~~~  298 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTE-----EE---KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-----PDDK  298 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCH
Confidence            4556778888899999999999999875     23   335678899999999999999999999998753     3344


Q ss_pred             HHHHHHHHHHHHh-hhcCCcHHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLE-WFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       389 ~~~~~l~~La~l~-~~~g~~~eA~~~l~~A~~  419 (455)
                         ..+..|+.+. ...+..+++...+.+++.
T Consensus       299 ---~a~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          299 ---AIRRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             --------------------------------
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence               3456666663 345666777777777765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.29  E-value=0.035  Score=48.87  Aligned_cols=64  Identities=14%  Similarity=0.000  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhc-C-----CcHHHHHHHHHH
Q 012829          348 LMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFL-G-----DTENAIKSMTEA  417 (455)
Q Consensus       348 ~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~-g-----~~~eA~~~l~~A  417 (455)
                      ...+..+|+.+|..    .+++++|+.+++++++     . +.++.   .+++||.+|... |     ++++|+.++++|
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-----~-~~~~~---a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-----L-SRTGY---AEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----T-SCTTH---HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-----c-CCCHH---HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            46666666666666    6666777666666553     1 34443   567777777653 3     677788777777


Q ss_pred             HHh
Q 012829          418 VEI  420 (455)
Q Consensus       418 ~~i  420 (455)
                      .+.
T Consensus       195 ~~~  197 (212)
T 3rjv_A          195 CLE  197 (212)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.22  E-value=0.067  Score=44.92  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=72.2

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhc---ccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKK---LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-  387 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~---~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h-  387 (455)
                      +....+...|-|+.|+.+...++.+...   ++.|  ..-.+++..++.++...|+|.+|..+++++|...+.+.-... 
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp--~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP--PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3344456778899999888777665421   1221  233567778999999999999999999999998874431111 


Q ss_pred             ----------------hHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 012829          388 ----------------PLLGLQYYTCGKLEWFLGDTENAIKSMTE  416 (455)
Q Consensus       388 ----------------p~~~~~l~~La~l~~~~g~~~eA~~~l~~  416 (455)
                                      +.-.-..|++|.-+..++++++|+..|+.
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                            11124678999999999999999887653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.00  E-value=0.053  Score=44.21  Aligned_cols=85  Identities=15%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      .+...+..++|+..++++.+.          ....+..+|+.+|..    .+++++|+.+++++.+.       .+   .
T Consensus        34 ~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~   93 (138)
T 1klx_A           34 VSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------ND---Q   93 (138)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TC---H
T ss_pred             HHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------CC---H
Confidence            333445667788888777653          124678889999988    89999999999998763       33   3


Q ss_pred             HHHHHHHHHhhh----cCCcHHHHHHHHHHHHh
Q 012829          392 LQYYTCGKLEWF----LGDTENAIKSMTEAVEI  420 (455)
Q Consensus       392 ~~l~~La~l~~~----~g~~~eA~~~l~~A~~i  420 (455)
                      ..+++||.+|..    .+++++|+.++++|.+.
T Consensus        94 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           94 DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            568999999998    89999999999999874

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.93  E-value=0.038  Score=42.97  Aligned_cols=64  Identities=11%  Similarity=0.010  Sum_probs=51.8

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ  380 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~  380 (455)
                      .....+..+...|++++|+..+++++.+     .|   ....++..++.+|...|++++|..++++++....
T Consensus        21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           21 LRFTLGKTYAEHEQFDAALPHLRAALDF-----DP---TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            3445566778899999999999999875     23   3355778899999999999999999999988654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.76  E-value=0.2  Score=38.35  Aligned_cols=74  Identities=7%  Similarity=-0.090  Sum_probs=56.3

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ++.+..++..|+|..|+.-++.++.....--. .......++..|+.+|..+|++++|+.+.++++.     +.|+|+..
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-----l~P~~~~~   82 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-----LDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHHH
Confidence            34566778899999999999998876432110 1235567788999999999999999999999877     45677655

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.46  E-value=0.12  Score=48.47  Aligned_cols=108  Identities=11%  Similarity=0.075  Sum_probs=71.9

Q ss_pred             HHHhhhcC--ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhh-----cCCC
Q 012829          314 TLALTSCG--NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRV-----YPQF  386 (455)
Q Consensus       314 a~~~~~~g--~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~-----~g~~  386 (455)
                      ++.....|  ++++|..+|+++...    ++ . ......+.+   +++.+|+|++|...++.++..+..+     ..++
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~----~p-~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~  253 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQT----FP-T-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY  253 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTT----SC-S-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHh----CC-C-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence            43344444  889999988886432    22 1 011122222   7999999999999988766654222     1245


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      +|.+   +.+++.+...+|+  +|..++.++.+     .-|+||++.++..+=.
T Consensus       254 ~~~~---LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~i~d~~~k~~  297 (310)
T 3mv2_B          254 KPTF---LANQITLALMQGL--DTEDLTNQLVK-----LDHEHAFIKHHQEIDA  297 (310)
T ss_dssp             HHHH---HHHHHHHHHHTTC--TTHHHHHHHHH-----TTCCCHHHHHHHHHHH
T ss_pred             CHHH---HHHHHHHHHHhCh--HHHHHHHHHHH-----hCCCChHHHHHHHHHH
Confidence            6654   6677777777887  88888888876     3599999999876633

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.39  E-value=0.087  Score=49.11  Aligned_cols=92  Identities=12%  Similarity=0.033  Sum_probs=69.7

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  399 (455)
Q Consensus       320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  399 (455)
                      .|++++|+.++++++++.     |.+   ......++..+...|++++|..++++++...  .+++..  ....+..++.
T Consensus       182 ~~~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~~--~~~l~~~~~~  249 (308)
T 2ond_A          182 SKDKSVAFKIFELGLKKY-----GDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEK--SGEIWARFLA  249 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHH-----TTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGGG--CHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHHH--HHHHHHHHHH
Confidence            689999999999998752     333   4556778888999999999999999987631  123221  2334667788


Q ss_pred             HhhhcCCcHHHHHHHHHHHHhchh
Q 012829          400 LEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       400 l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      ++...|+.++|...+.+|+++.-.
T Consensus       250 ~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          250 FESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHccc
Confidence            888899999999999999987643

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.23  E-value=0.3  Score=47.39  Aligned_cols=107  Identities=18%  Similarity=0.055  Sum_probs=85.1

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH-
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL-  390 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-  390 (455)
                      +.+.-+...|+|.+|.+++.+++.-..++ + +...+++++-.-+++|..++++.++..++.++..+...++  .||.+ 
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~  179 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKL-D-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQ  179 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTS-S-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcc-c-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHH
Confidence            44556788999999999998887755443 2 2467778888888999999999999999999988877665  66754 


Q ss_pred             HHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhch
Q 012829          391 GLQYYTCGKLEW-FLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       391 ~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~  422 (455)
                      |.....-|.++. ..++|++|-.++-+|..-+.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence            666667788888 89999999999999875544

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.93  E-value=0.028  Score=37.83  Aligned_cols=37  Identities=30%  Similarity=0.733  Sum_probs=30.1

Q ss_pred             CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhhHh
Q 012829           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQV   69 (455)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~~   69 (455)
                      ...|..|.. .....||.|.. .|||-.|.+    .|+.+|.-
T Consensus        12 ~~~C~vC~~-~~kY~CPrC~~-~yCSl~C~k----~Hk~~C~~   48 (56)
T 2yqq_A           12 TVVCVICLE-KPKYRCPACRV-PYCSVVCFR----KHKEQCNP   48 (56)
T ss_dssp             CCCCTTTCS-CCSEECTTTCC-EESSHHHHH----HHHHHCCC
T ss_pred             CCccCcCcC-CCeeeCCCCCC-CeeCHHHHH----HHHhhCcC
Confidence            457999999 67889999997 599999975    57777754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.64  E-value=0.35  Score=36.35  Aligned_cols=64  Identities=11%  Similarity=-0.097  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829          323 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  399 (455)
Q Consensus       323 ~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  399 (455)
                      ..+|..++++++++        +|.-.++...++..+...|+|++|+.++++++..    .|+ .|.+...-..+..
T Consensus        25 ~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~----~p~-~~~~~~i~~~I~~   88 (93)
T 3bee_A           25 TDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS----NDP-NLDRVTIIESINK   88 (93)
T ss_dssp             CHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC----CCT-TCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC-CccHHHHHHHHHH
Confidence            68999999999875        4445567777899999999999999999998773    444 5655544444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.49  E-value=0.16  Score=51.39  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=60.5

Q ss_pred             cCChH-------HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          320 CGNHQ-------EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       320 ~g~~~-------~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .|+++       +|+.+++++++.    ..|.   -..+...++..+...|++++|...+++++.+     ++.+|.  .
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~----~~p~---~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~  357 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAIST----LLKK---NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--L  357 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTT----TCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHH--H
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHH----hCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCch--H
Confidence            57776       777777776531    1233   3455667888888899999999999988873     444442  3


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .+.++|.++...|++++|+..+++|++.
T Consensus       358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          358 VYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            5666677777777788888888887763

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=94.42  E-value=0.064  Score=44.98  Aligned_cols=49  Identities=8%  Similarity=0.050  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHhhhhH
Q 012829          323 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-----------DWKEALAYCQLTIPVY  379 (455)
Q Consensus       323 ~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-----------~~~~A~~~~~~~l~~~  379 (455)
                      +++|+..+++++++        +|....++.+|+.+|..+|           +|++|++++++++++-
T Consensus        62 ~~eAi~~le~AL~l--------dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           62 IQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            45888888888876        4556778889999998875           8999999999998853

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.41  E-value=0.76  Score=36.69  Aligned_cols=88  Identities=14%  Similarity=0.047  Sum_probs=64.9

Q ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829          347 NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  425 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~  425 (455)
                      ...++..++|.++....+-..    -++.+.+++.++...+| ..--.+|.||..++.+|+|++|..++...+++     
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-----  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----
Confidence            556788888888887665333    13344445555555557 56688999999999999999999998887773     


Q ss_pred             CCCChhHHHHHHHHHHHH
Q 012829          426 GTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       426 G~~hp~~~~~~~~l~~~~  443 (455)
                      -|+++...++...+++..
T Consensus       104 eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A          104 EPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            488888888888777654

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=94.40  E-value=0.014  Score=39.52  Aligned_cols=36  Identities=28%  Similarity=0.696  Sum_probs=29.1

Q ss_pred             CccCccccC---cCCCcCCCCCCccccCCHHHhHhhhhhhHHhhH
Q 012829           27 ISRCDGCFA---SSNLKKCSACQVVWYCGSNCQKLDWKLHRLECQ   68 (455)
Q Consensus        27 ~~~C~~C~~---~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC~   68 (455)
                      ...|..|..   ......||.|+. .|||..|.+    .|+ +|.
T Consensus        11 ~~~C~vC~~~~~~~akY~CPrC~~-rYCSl~C~k----~Hk-~Cs   49 (59)
T 1x4s_A           11 AGPCGFCPAGEVQPARYTCPRCNA-PYCSLRCYR----THG-TCA   49 (59)
T ss_dssp             CEEECSSCTTCCEEECEECTTTCC-EESSHHHHH----HHC-CGG
T ss_pred             CCcCcCCCCCcCCCccccCcCCCC-CccChHHHH----HHh-HhC
Confidence            468999986   345899999997 599999987    476 775

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.40  E-value=0.29  Score=48.84  Aligned_cols=80  Identities=18%  Similarity=0.024  Sum_probs=39.4

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHH
Q 012829          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYY  395 (455)
Q Consensus       320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~  395 (455)
                      .+++++|+..++++.+.       .+   ..+...|+..|..    .+++++|+.+++++.+.       .+   ...++
T Consensus        92 ~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~  151 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALK-------GL---PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQ  151 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHH
T ss_pred             CCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHH
Confidence            45666666666655432       11   2334455555555    55666666665555432       12   12344


Q ss_pred             HHHHHhhh----cCCcHHHHHHHHHHHH
Q 012829          396 TCGKLEWF----LGDTENAIKSMTEAVE  419 (455)
Q Consensus       396 ~La~l~~~----~g~~~eA~~~l~~A~~  419 (455)
                      +||.++..    .+++++|+.++++|.+
T Consensus       152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~  179 (490)
T 2xm6_A          152 SMGDAYFEGDGVTRDYVMAREWYSKAAE  179 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            44555444    4445555555554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.36  E-value=0.32  Score=48.52  Aligned_cols=94  Identities=11%  Similarity=-0.004  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhhh----cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhh
Q 012829          307 VNILSKKTLALTS----CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPV  378 (455)
Q Consensus       307 ~~~l~~~a~~~~~----~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~  378 (455)
                      .......+..+..    .+++++|+..++++.+.       .+   ..+...|+..|..    .+++++|+.+++++.+.
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  108 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------GY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK  108 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            3444455555555    68999999999888653       12   4577889999998    89999999999998762


Q ss_pred             HHhhcCCCChHHHHHHHHHHHHhhh----cCCcHHHHHHHHHHHHh
Q 012829          379 YQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVEI  420 (455)
Q Consensus       379 ~~~~~g~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~~A~~i  420 (455)
                             .++   ..++.||.++..    .+++++|+.++++|.+.
T Consensus       109 -------~~~---~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  144 (490)
T 2xm6_A          109 -------GLP---QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ  144 (490)
T ss_dssp             -------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -------CCH---HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence                   344   557889999998    88999999999999763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.60  E-value=0.2  Score=40.63  Aligned_cols=77  Identities=10%  Similarity=0.004  Sum_probs=59.1

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829          322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  401 (455)
Q Consensus       322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~  401 (455)
                      ++++|+..++++.+.-       ++.-.     |+..|...+..++|+++++++.+.       .||   ..+++||.++
T Consensus        10 d~~~A~~~~~~aa~~g-------~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~---~a~~~Lg~~y   67 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-------EMFGC-----LSLVSNSQINKQKLFQYLSKACEL-------NSG---NGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-------CTTHH-----HHHHTCTTSCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-------CHhhh-----HHHHHHcCCCHHHHHHHHHHHHcC-------CCH---HHHHHHHHHH
Confidence            5567777777775431       22222     788888888899999999998774       343   6689999999


Q ss_pred             hh----cCCcHHHHHHHHHHHHh
Q 012829          402 WF----LGDTENAIKSMTEAVEI  420 (455)
Q Consensus       402 ~~----~g~~~eA~~~l~~A~~i  420 (455)
                      ..    .+++++|+.++++|.+.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC
Confidence            98    88999999999999863

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=93.05  E-value=0.39  Score=47.54  Aligned_cols=78  Identities=18%  Similarity=0.144  Sum_probs=35.4

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc----ccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829          322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL----EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  397 (455)
Q Consensus       322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~----g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  397 (455)
                      ++++|+..++++.+.        .+.......+|+.+|...    +++++|+.+++++.        +.+|   ..+++|
T Consensus       194 ~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--------~g~~---~a~~~L  254 (452)
T 3e4b_A          194 QQAELLKQMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--------PGYP---ASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--------GGST---HHHHHH
T ss_pred             cHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--------CCCH---HHHHHH
Confidence            556666665555432        111222234455554332    45555555555443        1222   234455


Q ss_pred             HHH-h--hhcCCcHHHHHHHHHHH
Q 012829          398 GKL-E--WFLGDTENAIKSMTEAV  418 (455)
Q Consensus       398 a~l-~--~~~g~~~eA~~~l~~A~  418 (455)
                      |.+ +  ...+++++|+.++++|.
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHH
Confidence            554 2  23455555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.04  E-value=0.4  Score=44.27  Aligned_cols=96  Identities=11%  Similarity=-0.019  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc-----ccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829          324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL-----EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  398 (455)
Q Consensus       324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~-----g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  398 (455)
                      .+|..+.++++++..      +..-..++..|+..|...     |+.++|.+++++++.+.     |++  .....+..|
T Consensus       180 ~~A~a~lerAleLDP------~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~--~id~~v~YA  246 (301)
T 3u64_A          180 HAAVMMLERACDLWP------SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAH--DPDHHITYA  246 (301)
T ss_dssp             HHHHHHHHHHHHHCT------THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTT--CSHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC------CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCC--CchHHHHHH
Confidence            355556666666521      122345777888888885     99999999999999854     222  124466668


Q ss_pred             HHhhh-cCCcHHHHHHHHHHHHhchhccCCCChhHH
Q 012829          399 KLEWF-LGDTENAIKSMTEAVEILRITHGTNSPFMK  433 (455)
Q Consensus       399 ~l~~~-~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~  433 (455)
                      ..+.. +|++++|..+|++|+++=-.. .|+.++.-
T Consensus       247 ~~l~~~~gd~~~a~~~L~kAL~a~p~~-~P~~~lan  281 (301)
T 3u64_A          247 DALCIPLNNRAGFDEALDRALAIDPES-VPHNKLLV  281 (301)
T ss_dssp             HHTTTTTTCHHHHHHHHHHHHHCCGGG-CSSCHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHcCCCCC-CCChhHHH
Confidence            87777 599999999999999843332 35555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.03  E-value=0.33  Score=54.47  Aligned_cols=94  Identities=10%  Similarity=-0.030  Sum_probs=67.0

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh---------
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR---------  381 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~---------  381 (455)
                      ...|..+...|+|++|+..|..+                .....++.+|..+|++++|++.++++.+..-.         
T Consensus      1199 ~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve 1262 (1630)
T 1xi4_A         1199 QQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 1262 (1630)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            44677778888888888888775                23556888899999999999999888554220         


Q ss_pred             --------hcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          382 --------VYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       382 --------~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                              .+|-....-+-.+..++..|..+|.+++|+.++++|+.+
T Consensus      1263 ~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A         1263 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred             hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence                    112111111234668888899999999999999998754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.78  E-value=0.46  Score=53.29  Aligned_cols=95  Identities=15%  Similarity=0.064  Sum_probs=65.2

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhh--ccc-------C-----CccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQK--KLY-------H-----PFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVY  379 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~--~~l-------~-----~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~  379 (455)
                      |..+...|.+++|..+|+++.....  .++       .     ......-.++..+|.++...|+|++|++.+.++    
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence            5556677777787777765421100  000       0     012233456778899999999999999988664    


Q ss_pred             HhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          380 QRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       380 ~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                            ++|   ..++++|..+..+|++++|+++|..|.+..
T Consensus      1132 ------dD~---say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1132 ------DDP---SSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             ------CCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence                  333   446778999999999999999999988754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=92.58  E-value=0.21  Score=49.18  Aligned_cols=92  Identities=14%  Similarity=0.046  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829          304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  383 (455)
Q Consensus       304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  383 (455)
                      ...+......|..+...|++++|++.++++.          +   ..+...+..++...|+|+.|......        +
T Consensus       145 Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~--------L  203 (449)
T 1b89_A          145 YNNVSNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLH--------I  203 (449)
T ss_dssp             HHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTT--------T
T ss_pred             HHHhhhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHH--------H
Confidence            3344555667888888999999999888771          1   34556778889999999999554433        1


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          384 PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       384 g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      . .||.-   +..++.+|..+|++++|..+|++|+.+
T Consensus       204 ~-~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          204 V-VHADE---LEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             T-TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             H-hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            1 45544   335788899999999999999999753

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=92.55  E-value=1  Score=39.68  Aligned_cols=61  Identities=13%  Similarity=0.078  Sum_probs=48.6

Q ss_pred             cccHHHHHHHHHHhhhhHHhhcCCCChHH-HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          362 LEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       362 ~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      .|+-+.|...++.+.++...-+||.||.+ |+.++--.-.|.-+++.++|..+-++|.++.+
T Consensus       138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~  199 (227)
T 2o8p_A          138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILE  199 (227)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            35667899999999999998899999975 55555444445568999999999999988753

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=92.18  E-value=1.6  Score=40.94  Aligned_cols=76  Identities=18%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCCChhHHHHHHHHHHHHHH
Q 012829          367 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       367 ~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      .++.++.+++...++.|+..|.   ..+.-+|.-++..+++.||...+.+|.++.+.. |..+..   ++...+-++..+
T Consensus       275 ~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDe---EIYKEf~eIAne  348 (472)
T 3re2_A          275 PAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDE---EMYKEFHEIAND  348 (472)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGH---HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHH
Confidence            3889999999999999998885   446677888999999999999999999887765 554432   555555555555


Q ss_pred             Hhh
Q 012829          446 ASY  448 (455)
Q Consensus       446 ~~~  448 (455)
                      +=+
T Consensus       349 liP  351 (472)
T 3re2_A          349 LIP  351 (472)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=92.17  E-value=1.6  Score=36.11  Aligned_cols=72  Identities=10%  Similarity=-0.022  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhhhcC---ChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc
Q 012829          308 NILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY  383 (455)
Q Consensus       308 ~~l~~~a~~~~~~g---~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~  383 (455)
                      +..++-|+.+..++   +.++++.+++.+++..       ++ .--+.++.|+..|.+.|+|++|+++++.++++-    
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie----  101 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE----  101 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Confidence            45566777777766   5668888887776531       22 345778999999999999999999999988843    


Q ss_pred             CCCChHHH
Q 012829          384 PQFHPLLG  391 (455)
Q Consensus       384 g~~hp~~~  391 (455)
                       |+|++..
T Consensus       102 -P~n~QA~  108 (152)
T 1pc2_A          102 -PQNNQAK  108 (152)
T ss_dssp             -TTCHHHH
T ss_pred             -CCCHHHH
Confidence             5666543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.81  E-value=1.6  Score=42.85  Aligned_cols=103  Identities=6%  Similarity=-0.097  Sum_probs=77.3

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      .+.|.-+...|++++|.+.+.++......     ....++..-.+++++...++|..+..+..++......   ..+|.+
T Consensus       135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~---~~d~~~  206 (429)
T 4b4t_R          135 INLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK---GGDWER  206 (429)
T ss_dssp             HHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---CCCTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc---CCCHHH
Confidence            34566677889999999999888765432     2456778888899999999999999999998665432   344543


Q ss_pred             -HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          391 -GLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       391 -~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                       +....--|.+++..++|.+|-.++.++....
T Consensus       207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence             4444556888899999999999988876543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=91.51  E-value=0.74  Score=46.33  Aligned_cols=81  Identities=15%  Similarity=0.055  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-------cccHH-------HHHHHHHHhhhhHHhhcCCCChHH
Q 012829          325 EVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-------LEDWK-------EALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       325 ~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-------~g~~~-------~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      .++.+|++++...     |.+   ..+...++..+..       .|+++       +|...+++++..       ..|.-
T Consensus       256 ~a~~~y~~al~~~-----p~~---~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~  320 (530)
T 2ooe_A          256 RVMFAYEQCLLVL-----GHH---PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKN  320 (530)
T ss_dssp             HHHHHHHHHHHHH-----TTC---HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSC
T ss_pred             HHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCccc
Confidence            5667788877642     333   3455566666664       78987       677776666652       12333


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...++.+|.++...|++++|...+++|+++
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            456788899999999999999999999985

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=91.48  E-value=0.41  Score=45.92  Aligned_cols=63  Identities=14%  Similarity=0.026  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..++..++..+...|++++|..+.++++..-     + +   ...+..+|+++...|++++|++.+.+|+.+
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3445556666677799999999999999863     2 2   356678899999999999999999999984

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.40  E-value=3.3  Score=33.20  Aligned_cols=84  Identities=15%  Similarity=0.011  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhccc---HHHHHHHHHHhhhhHHhhcCCCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchh
Q 012829          348 LMQTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRI  423 (455)
Q Consensus       348 ~~~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~  423 (455)
                      ..++..++|..+....+   ..+++.++..++.        .+| ..--.+|-||.-+..+|+|++|..+....++    
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~--------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~----  106 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE----  106 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----
Confidence            34777788888877643   4456665554433        235 4567789999999999999999999887776    


Q ss_pred             ccCCCChhHHHHHHHHHHHHH
Q 012829          424 THGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       424 ~~G~~hp~~~~~~~~l~~~~~  444 (455)
                       .-|+.....++...+++...
T Consensus       107 -~eP~N~QA~~Lk~~Ie~ki~  126 (134)
T 3o48_A          107 -HERNNKQVGALKSMVEDKIQ  126 (134)
T ss_dssp             -TCTTCHHHHHHHHHHHHHHH
T ss_pred             -hCCCCHHHHHHHHHHHHHHH
Confidence             34888888888888777654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=91.15  E-value=0.49  Score=46.63  Aligned_cols=103  Identities=10%  Similarity=-0.020  Sum_probs=60.9

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      ..+..+...|.|++|...|..+                .....|+.++..+|+|++|++.++++          .+|.+ 
T Consensus       127 ~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA----------~~~~~-  179 (449)
T 1b89_A          127 QVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKA----------NSTRT-  179 (449)
T ss_dssp             ----------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHH----------TCHHH-
T ss_pred             HHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHc----------CCchh-
Confidence            3455677889999999988765                23556899999999999999998887          23422 


Q ss_pred             HHHHHHHHHhhhcCCcHHHH-----------------HH------HHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAI-----------------KS------MTEAVEILRITHGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~-----------------~~------l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~  444 (455)
                        +..+...+...|+++.|.                 .+      +.+|+..++..+|-+ +.--.+...|..+..
T Consensus       180 --Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~  252 (449)
T 1b89_A          180 --WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS  252 (449)
T ss_dssp             --HHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence              334444555555554443                 33      445788888888877 333444444444433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.09  E-value=1.3  Score=37.02  Aligned_cols=70  Identities=20%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-----------------cccHHHHHHHHHHHHHhcccHHH
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-----------------SVNLMQTREKLIKILMELEDWKE  367 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~-----------------~~~~~~~~~~L~~~~~~~g~~~~  367 (455)
                      .+++.+.-.|+.++.+|+|..|...|++++...+.+.-..                 ...=.+.++.++..|..++++.+
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            3455666678888999999999999999988765432111                 11223688999999999999999


Q ss_pred             HHHHHHH
Q 012829          368 ALAYCQL  374 (455)
Q Consensus       368 A~~~~~~  374 (455)
                      |+...+.
T Consensus       141 Ai~~Le~  147 (167)
T 3ffl_A          141 AIAILDG  147 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998554

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=90.68  E-value=2.5  Score=40.54  Aligned_cols=67  Identities=12%  Similarity=0.163  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCCCh-hHHHHH
Q 012829          367 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTNSP-FMKELI  436 (455)
Q Consensus       367 ~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~hp-~~~~~~  436 (455)
                      .+++++.+++.+.+++|...|.   .-|.-+|--++..+++.+|...+.+|.++++.. |+.+.. ++++++
T Consensus       282 ~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~  350 (489)
T 4gq4_A          282 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF  350 (489)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHH
Confidence            4778999999999999998884   446667888888999999999999999888776 665543 334443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.62  E-value=4.4  Score=32.91  Aligned_cols=84  Identities=15%  Similarity=0.010  Sum_probs=61.2

Q ss_pred             cHHHHHHHHHHHHHhccc---HHHHHHHHHHhhhhHHhhcCCCCh-HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          347 NLMQTREKLIKILMELED---WKEALAYCQLTIPVYQRVYPQFHP-LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       347 ~~~~~~~~L~~~~~~~g~---~~~A~~~~~~~l~~~~~~~g~~hp-~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      ...++..++|..+....+   ..+++.+++.++.        .+| ..--.+|-||.-+..+|+|++|..+....++   
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---
Confidence            456777788888877654   4456666555444        233 3456788999999999999999999888777   


Q ss_pred             hccCCCChhHHHHHHHHHHHH
Q 012829          423 ITHGTNSPFMKELILKLEEAQ  443 (455)
Q Consensus       423 ~~~G~~hp~~~~~~~~l~~~~  443 (455)
                        .-|+.....++...+++..
T Consensus       106 --~eP~n~QA~~Lk~~Ie~~i  124 (144)
T 1y8m_A          106 --HERNNKQVGALKSMVEDKI  124 (144)
T ss_dssp             --TCCCCHHHHHHHHHHHHHH
T ss_pred             --cCCCcHHHHHHHHHHHHHH
Confidence              3588888888887777654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=90.60  E-value=1.9  Score=42.53  Aligned_cols=92  Identities=10%  Similarity=0.015  Sum_probs=61.6

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc---cHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE---DWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g---~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      ..+..+...+.++++....+......    ...++.   +...|+.+|...|   ++++|+.+++++.+     .|   |
T Consensus       146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a----~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~-----~g---~  210 (452)
T 3e4b_A          146 AQVLLYRTQGTYDQHLDDVERICKAA----LNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVS-----RG---T  210 (452)
T ss_dssp             HHHHHHHHHTCGGGGHHHHHHHHHHH----TTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TT---C
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHH----HcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHH-----CC---C
Confidence            33444455555555554433322211    122333   6788999999999   99999999998876     23   3


Q ss_pred             HHHHHHHHHHHHhhhc----CCcHHHHHHHHHHH
Q 012829          389 LLGLQYYTCGKLEWFL----GDTENAIKSMTEAV  418 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~----g~~~eA~~~l~~A~  418 (455)
                      ..+..+++||.++...    +++++|+.++++|.
T Consensus       211 ~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa  244 (452)
T 3e4b_A          211 VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA  244 (452)
T ss_dssp             SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence            3355578899998765    78999999999985

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=90.26  E-value=5.6  Score=35.59  Aligned_cols=80  Identities=10%  Similarity=0.011  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE  441 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~  441 (455)
                      +.|...++.+.++...-+||.||.+.-...|.+..|+ -+++.++|..+-++|.+-...   +++.+  .+++....++-
T Consensus       148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~eld~l~ee--sykDstlImqL  225 (248)
T 3uzd_A          148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNED--SYKDSTLIMQL  225 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTT--THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCcc--chHHHHHHHHH
Confidence            4677888899998888999999976444445555555 489999988877766543222   24444  36777777777


Q ss_pred             HHHHHh
Q 012829          442 AQAEAS  447 (455)
Q Consensus       442 ~~~~~~  447 (455)
                      ++..+.
T Consensus       226 LRDNLt  231 (248)
T 3uzd_A          226 LRDNLT  231 (248)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=89.97  E-value=3.5  Score=39.44  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=53.6

Q ss_pred             HHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc-cCCC-ChhHHHHHH
Q 012829          367 EALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT-HGTN-SPFMKELIL  437 (455)
Q Consensus       367 ~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~-~G~~-hp~~~~~~~  437 (455)
                      .++.++.+++...+++|+..|.   .-|.-+|.-++..+++.||...+.+|.++.+.. |..+ -.+++|.++
T Consensus       297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e  366 (550)
T 3u84_A          297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE  366 (550)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence            3889999999999999998885   446677888999999999999999999888765 5433 334454443

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=89.88  E-value=2.1  Score=38.04  Aligned_cols=79  Identities=11%  Similarity=0.095  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchhc---cCCCChhHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRIT---HGTNSPFMKELILKLEE  441 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~~---~G~~hp~~~~~~~~l~~  441 (455)
                      +.|...++.+.++...-+||.||.+.-...|.+..|+ -+++.++|..+-++|.+-....   ++.+  .+++....++-
T Consensus       150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld~l~ee--sykDstlImqL  227 (236)
T 3iqu_A          150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSED--SYKDSTLIMQL  227 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChh--hhHHHHHHHHH
Confidence            5677888889998888999999976444444555554 5799999888777665432222   3333  46776666666


Q ss_pred             HHHHH
Q 012829          442 AQAEA  446 (455)
Q Consensus       442 ~~~~~  446 (455)
                      ++..+
T Consensus       228 LRDNL  232 (236)
T 3iqu_A          228 LRDNL  232 (236)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=89.77  E-value=1.4  Score=41.23  Aligned_cols=97  Identities=10%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhc-ccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKK-LYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~-~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      .+..+...|+.+.|.++++...+.... +++ .+..++.............+++++|..+++.+..    .+|.+  ...
T Consensus       142 ~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~-~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~----~~p~~--~~~  214 (310)
T 3mv2_B          142 AIEVALLNNNVSTASTIFDNYTNAIEDTVSG-DNEMILNLAESYIKFATNKETATSNFYYYEELSQ----TFPTW--KTQ  214 (310)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT----TSCSH--HHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCcccccc-chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hCCCc--ccH
Confidence            344566789999999988777553210 000 1222333222222222333489999998888654    23321  122


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      ..+++   ++..+|++++|+..|+++++
T Consensus       215 ~lLln---~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          215 LGLLN---LHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHHHH---HHHHHTCHHHHHHHHHHHHS
T ss_pred             HHHHH---HHHHcCCHHHHHHHHHHHHH
Confidence            33444   78899999999999986554

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=89.51  E-value=2.4  Score=37.66  Aligned_cols=79  Identities=13%  Similarity=0.095  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE  441 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~  441 (455)
                      +.|...++.+.++.+.-+||.||.+.-...+.+..|+ -+++.++|..+-++|.+-...   +++.+  .+++....++-
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~l~ee--sykDstlImqL  224 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEE--SYKDSTLIMQL  224 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTT--THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccChh--hhHHHHHHHHH
Confidence            4677888999998888899999976444445555554 589999988876665543222   23444  36777666666


Q ss_pred             HHHHH
Q 012829          442 AQAEA  446 (455)
Q Consensus       442 ~~~~~  446 (455)
                      ++..+
T Consensus       225 LrDNL  229 (234)
T 2br9_A          225 LRDNL  229 (234)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66655

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=88.73  E-value=6.2  Score=35.61  Aligned_cols=55  Identities=20%  Similarity=0.291  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhhhHHhhc--CCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHh
Q 012829          366 KEALAYCQLTIPVYQRVY--PQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~--g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i  420 (455)
                      +.|.+.|+.+.++.+.-+  ||.||.+.-...|.++.|+ -+++.++|..+-++|.+-
T Consensus       169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            567788889999888889  9999986444555666655 589999999998888765

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=88.08  E-value=3.5  Score=37.13  Aligned_cols=80  Identities=14%  Similarity=0.101  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhh-cCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF-LGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE  441 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~-~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~  441 (455)
                      +.|...++.+.++...-+||.||.+.-...|.+..|+. +++.++|..+-++|.+-...   +++.++  +++....++-
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L~ees--ykDstlImQL  250 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEES--YKDSTLIMQL  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhh--hHHHHHHHHH
Confidence            45778888888888889999999864444455665554 79999988876666543222   345554  6787777777


Q ss_pred             HHHHHh
Q 012829          442 AQAEAS  447 (455)
Q Consensus       442 ~~~~~~  447 (455)
                      ++..+.
T Consensus       251 LRDNLt  256 (261)
T 3ubw_A          251 LRDNLT  256 (261)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776653

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.02  E-value=17  Score=35.08  Aligned_cols=80  Identities=18%  Similarity=0.119  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      -..|+..|...|+|.+|+....+++.-..++..  -..+.-.+..-.+++..++++.++..+|.+|..+....+  .||.
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~  177 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDD--KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY--CPPK  177 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHH
Confidence            347999999999999999999999888777543  233444455567889999999999999999999887654  6776


Q ss_pred             HHHH
Q 012829          432 MKEL  435 (455)
Q Consensus       432 ~~~~  435 (455)
                      +...
T Consensus       178 i~a~  181 (394)
T 3txn_A          178 VQGA  181 (394)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.22  E-value=8.8  Score=37.73  Aligned_cols=103  Identities=9%  Similarity=-0.052  Sum_probs=73.2

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCC-ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHP-FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LG  391 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~-~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~  391 (455)
                      |..+...|++.+|..++..+..-   ..+. +....++..-..++.|...+||.+|..+..++.......  +.+|. .+
T Consensus       144 a~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~  218 (445)
T 4b4t_P          144 VEIKKEEGKIDEAADILCELQVE---TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKL  218 (445)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHH
Confidence            34455779999999887776432   2222 234556777778889999999999999988864432222  34554 45


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                      ..+...|.++...++|.+|-.+|.++.+..
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            666778999999999999999888876543

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=87.16  E-value=2.9  Score=37.74  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE  441 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~  441 (455)
                      +.|...|+.+.++.+.-+||.||.+.-...+.+..|+ -+++.++|..+-++|.+-...   +++.++  +++....++-
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~Ees--ykDstlImqL  229 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEES--YKDSTLIMQL  229 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccChhh--hHHHHHHHHH
Confidence            4677888899998888899999976444445555554 589999988876665533222   345554  3444444444


Q ss_pred             HHHHH
Q 012829          442 AQAEA  446 (455)
Q Consensus       442 ~~~~~  446 (455)
                      ++..+
T Consensus       230 LRDNL  234 (260)
T 1o9d_A          230 LRDNL  234 (260)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=85.76  E-value=5  Score=40.22  Aligned_cols=89  Identities=8%  Similarity=0.009  Sum_probs=65.1

Q ss_pred             hhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          317 LTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       317 ~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      +...|++++|..+++...+.   -+.|+    ..++..|+..|...|++++|.++++.+...     | ..|.. ..+..
T Consensus       115 ~~~~g~~~~A~~l~~~M~~~---g~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----G-~~Pd~-~ty~~  180 (501)
T 4g26_A          115 AVAKDDPEMAFDMVKQMKAF---GIQPR----LRSYGPALFGFCRKGDADKAYEVDAHMVES-----E-VVPEE-PELAA  180 (501)
T ss_dssp             HHHHTCHHHHHHHHHHHHHT---TCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----T-CCCCH-HHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHc---CCCCc----cceehHHHHHHHHCCCHHHHHHHHHHHHhc-----C-CCCCH-HHHHH
Confidence            44568999999998776542   12232    456778899999999999999998887642     2 22222 45777


Q ss_pred             HHHHhhhcCCcHHHHHHHHHHHH
Q 012829          397 CGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       397 La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      |-..+...|+.++|..+|++-.+
T Consensus       181 Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          181 LLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHH
Confidence            77888999999999999887543

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=85.30  E-value=5.4  Score=35.96  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE  441 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~  441 (455)
                      +.|...|+.+.++. .-+||.||...-...+.+..|+ -+++.++|..+-++|.+-...   +++.++  +++....++-
T Consensus       173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~ees--ykDstlImqL  249 (260)
T 2npm_A          173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDC--YKDSTLIMQL  249 (260)
T ss_dssp             HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGGCCTTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcCChhh--hHHHHHHHHH
Confidence            46777888888888 8899999976444445555555 589999988877666543222   344444  6777666666


Q ss_pred             HHHHHh
Q 012829          442 AQAEAS  447 (455)
Q Consensus       442 ~~~~~~  447 (455)
                      ++..+.
T Consensus       250 LRDNLt  255 (260)
T 2npm_A          250 LRDNLT  255 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=84.70  E-value=4.3  Score=41.37  Aligned_cols=91  Identities=10%  Similarity=-0.090  Sum_probs=61.0

Q ss_pred             HHHhhhcC--ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          314 TLALTSCG--NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       314 a~~~~~~g--~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ++.+...|  +++++++.+.+++++     +|.+   ..+...-+.+....| .++++++++.++++.        +|.-
T Consensus       114 ~w~l~~l~~~~~~~el~~~~k~l~~-----d~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n  177 (567)
T 1dce_A          114 CWLLSRLPEPNWARELELCARFLEA-----DERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSN  177 (567)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCC
T ss_pred             HHHHHHcccccHHHHHHHHHHHHhh-----cccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCC
Confidence            34444456  679999999888875     2333   334444555666778 899999999998873        3333


Q ss_pred             HHHHHHHHHHhhhc--------------CCcHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFL--------------GDTENAIKSMTEAVEI  420 (455)
Q Consensus       391 ~~~l~~La~l~~~~--------------g~~~eA~~~l~~A~~i  420 (455)
                      ..+++..+.++..+              +++++|++++.+|+.+
T Consensus       178 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence            34555556665553              5578899998888874

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=83.87  E-value=7.7  Score=36.01  Aligned_cols=106  Identities=11%  Similarity=0.025  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCC-hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Q 012829          298 EEIKKIASEVNILSKKTLALTSCGN-HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE--DWKEALAYCQL  374 (455)
Q Consensus       298 ~~~~~~~~e~~~l~~~a~~~~~~g~-~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g--~~~~A~~~~~~  374 (455)
                      ++.+.+...+.++.       ..|. .++|+.++.+++.+     .|.|+.   +.+.=+.++...|  ++++++++...
T Consensus        30 ~~y~~~~~~~~a~~-------~~~e~s~~aL~~t~~~L~~-----nP~~~t---aWn~R~~~L~~l~~~~~~eeL~~~~~   94 (306)
T 3dra_A           30 EDYKQIMGLLLALM-------KAEEYSERALHITELGINE-----LASHYT---IWIYRFNILKNLPNRNLYDELDWCEE   94 (306)
T ss_dssp             HHHHHHHHHHHHHH-------HTTCCSHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-------HcCCCCHHHHHHHHHHHHH-----CcHHHH---HHHHHHHHHHHcccccHHHHHHHHHH
Confidence            45555555555433       3344 46899998888765     344443   3334445566677  99999999999


Q ss_pred             hhhhHHhhcCCCChHHHHHHHHHHHHhhhc---CCcHHHHHHHHHHHHhch
Q 012829          375 TIPVYQRVYPQFHPLLGLQYYTCGKLEWFL---GDTENAIKSMTEAVEILR  422 (455)
Q Consensus       375 ~l~~~~~~~g~~hp~~~~~l~~La~l~~~~---g~~~eA~~~l~~A~~i~~  422 (455)
                      ++....+.|..+|- ++..+..+.   ...   +++++++..+.+++++-.
T Consensus        95 ~L~~nPk~y~aW~~-R~~iL~~~~---~~l~~~~~~~~EL~~~~~~l~~~p  141 (306)
T 3dra_A           95 IALDNEKNYQIWNY-RQLIIGQIM---ELNNNDFDPYREFDILEAMLSSDP  141 (306)
T ss_dssp             HHHHCTTCCHHHHH-HHHHHHHHH---HHTTTCCCTHHHHHHHHHHHHHCT
T ss_pred             HHHHCcccHHHHHH-HHHHHHHHH---HhccccCCHHHHHHHHHHHHHhCC
Confidence            88754333332221 122221111   233   788899999888886543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=83.72  E-value=15  Score=30.26  Aligned_cols=85  Identities=13%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhhcccCCccccHH--HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHh
Q 012829          324 QEVVSTYKMIEKLQKKLYHPFSVNLM--QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLE  401 (455)
Q Consensus       324 ~~a~~~~~~~l~~~~~~l~~~~~~~~--~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~  401 (455)
                      ++.++.|+++.+.....-+-....++  -.++.+.   ...+|.++|.+.++.++.+        |...|......|+-.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~---~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFE  104 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL---KAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFE  104 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH---HHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHH
Confidence            56667777766532111122222223  3333332   4458899999999998885        333366666678888


Q ss_pred             hhcCCcHHHHHHHHHHHH
Q 012829          402 WFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       402 ~~~g~~~eA~~~l~~A~~  419 (455)
                      ..+|....|.+.|.+|+.
T Consensus       105 iRqgnl~kARkILg~AiG  122 (161)
T 4h7y_A          105 LSQGNVKKSKQLLQKAVE  122 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHhc
Confidence            889999999999999998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=83.41  E-value=9.1  Score=38.95  Aligned_cols=89  Identities=17%  Similarity=0.064  Sum_probs=54.5

Q ss_pred             hhhcCCh-HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhccc----------HHHHHHHHHHhhhhHHhhcCC
Q 012829          317 LTSCGNH-QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED----------WKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       317 ~~~~g~~-~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~----------~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      ....|++ ++|+..+.+++.+     .|.++..   .+.=+.++...|+          +++|++++.+++...      
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~-----nP~~~ta---W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------  103 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGA-----NPDFATL---WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------  103 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHH-----CTTCHHH---HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHcCCCCHHHHHHHHHHHHH-----CchhHHH---HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC------
Confidence            3344544 5778888888764     3444443   3333344444555          889999988888633      


Q ss_pred             CChHHHHHHHHHHHHhhhcC--CcHHHHHHHHHHHHhc
Q 012829          386 FHPLLGLQYYTCGKLEWFLG--DTENAIKSMTEAVEIL  421 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g--~~~eA~~~l~~A~~i~  421 (455)
                        |.-...++.-+-++...|  ++++|.+.+.+|+++-
T Consensus       104 --pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d  139 (567)
T 1dce_A          104 --PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD  139 (567)
T ss_dssp             --TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred             --CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc
Confidence              222233444455666677  5588888888887753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=83.05  E-value=6.6  Score=31.20  Aligned_cols=66  Identities=14%  Similarity=0.017  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccc-cHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSV-NLMQTREKLIKILMELEDWKEALAYCQLTIPV  378 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~-~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  378 (455)
                      +.++-|+.+..+.+..+..    +.+.+.+.++..+++ .--+.++.||..+.+.|+|.+|+.+++.+|.+
T Consensus        37 ~~F~yAw~Lv~S~~~~d~~----~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           37 TQFEYAWCLVRTRYNDDIR----KGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHTTSSSHHHHH----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHH----HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            4455666666554444321    222233334444434 44577889999999999999999999998873

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=82.05  E-value=5.7  Score=28.94  Aligned_cols=57  Identities=18%  Similarity=0.092  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc--cCCCChhHHHHHHHHHHHHHHH
Q 012829          390 LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       390 ~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~--~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      .|..+.+-|.-.-..|++++|..+|.+|++.+...  +.++...-..+..++.+-..++
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RA   68 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRI   68 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            45566666777788999999999999999988764  5666665444666666655444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=80.94  E-value=3  Score=41.77  Aligned_cols=61  Identities=18%  Similarity=0.104  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVE  419 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~  419 (455)
                      +.-.|+.+....+.+..|..+|.+++...        |..|..++.||.+....|+.-+|+-+|.||+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            45567777777788899999999998854        78899999999999999999999999999885

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=80.71  E-value=6.7  Score=28.60  Aligned_cols=57  Identities=16%  Similarity=0.085  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc--cCCCChhHHHHHHHHHHHHHHHh
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT--HGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~--~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                      |..+.+-|.-.-..|++++|..+|.+|++.+...  +.++...-..+..++.+-..+++
T Consensus        19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE   77 (83)
T 2w2u_A           19 ARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIE   77 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            5556666777788999999999999999988764  45665543446666666554443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.49  E-value=28  Score=32.66  Aligned_cols=27  Identities=30%  Similarity=0.175  Sum_probs=19.5

Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHH
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSM  414 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l  414 (455)
                      ..||.+   ...+|.+++..+++.+|+.++
T Consensus       133 ~Gdp~L---H~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          133 AGDPEL---HHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             TCCHHH---HHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHH---HHHHHHHHHccCCHHHHHHHH
Confidence            445533   345688889889999988875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	455
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	7e-11
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	3e-10
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	3e-10
d2h2ja2	261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	8e-08
d2f69a2	171	b.85.7.1 (A:194-364) Histone H3 K4-specific methyl	1e-04

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 7e-11
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          RC  C A +  K+CS CQ  WYC   CQ   W+ H   C
Sbjct: 10 RCAYCSAEA-SKRCSRCQNEWYCCRECQVKHWEKHGKTC 47

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 3e-10
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 30 CDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
          C  C   + + +C+ C  V YC + CQ+ DWK H+  C
Sbjct: 2  CVNCGREA-MSECTGCHKVNYCSTFCQRKDWKDHQHIC 38

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 3e-10
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
           S   C  C   +  + CS C    YCGS CQ  DW+ H   C
Sbjct: 6  DSSESCWNCGRKA-SETCSGCNTARYCGSFCQHKDWEKHHHIC 47

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 51.1 bits (121), Expect = 8e-08
 Identities = 29/225 (12%), Positives = 66/225 (29%), Gaps = 41/225 (18%)

Query: 8   GEVIISQEPYVCVPNNSSSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC 67
            +VI+     + +  ++ + S        S LK   +  +      + +   WK +    
Sbjct: 44  NDVILQVPKRLWINPDAVAASEIGRVC--SELKPWLSVILFLIRERSREDSVWKHY---- 97

Query: 68  QVLSRLDKEKRKSVTPSIRLMLKLYLRRKLQNDNVIPSTTTDNYSLVEALVAHMSDIDEK 127
                     +++ +    +       ++LQ   ++ +T +    +    +    +I   
Sbjct: 98  -----FGILPQETDST---IYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILP 149

Query: 128 QLLLYAQIANLVNLILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIIN 187
              L+     L                ++F        +   S LR     + P+  +IN
Sbjct: 150 NKRLFPDPVTL----------------DDFFWAFGILRSRAFSRLRNENLVVVPMADLIN 193

Query: 188 HSCLPNAVLVF-----------EGRLAVVRAVQHVPKGAEVLISY 221
           HS                       L  +++   V  G +V I Y
Sbjct: 194 HSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 238

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 7/117 (5%)

Query: 141 LILQWPEISINEIAENFSKLACNAHTICNSELRPLGTGLY--PVISIINHSCLPNA---- 194
           + +   E+   + A N + L+ +  T+ +          Y   +    NHS  PN     
Sbjct: 55  VRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDM 114

Query: 195 -VLVFEGRLAVVRAVQHVPKGAEVLISYIETAGSTMTRQKALKEQYLFTCTCPRCIK 250
            V    G +  +R ++ V    E+ ++Y               E Y       +  +
Sbjct: 115 FVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQATQ 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	455
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	99.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.17
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	99.11
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	98.95
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	98.88
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	98.87
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.86
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.85
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.85
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	98.85
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.82
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.79
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	98.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.67
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	98.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.5
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.48
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.46
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.37
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.32
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.28
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.25
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.2
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.1
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.86
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.84
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.49
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.44
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.37
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.23
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.11
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.07
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.02
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.95
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.8
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.66
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.61
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.41
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.69
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.14
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	92.35
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	91.92
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	91.73
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	91.53
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	90.96
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	90.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	89.07
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	88.77
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	85.92
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	84.9
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	83.22
d2qtva5	75	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	82.09
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	82.07
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	81.98
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	81.08

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.41  E-value=4.1e-14  Score=130.17  Aligned_cols=88  Identities=22%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             CCCHHHHHHHHhhhhccccccccCCCCcceeeecccccccCCCCCCCcEEEEeC-----------CEEEEEEecccCCCC
Q 012829          147 EISINEIAENFSKLACNAHTICNSELRPLGTGLYPVISIINHSCLPNAVLVFEG-----------RLAVVRAVQHVPKGA  215 (455)
Q Consensus       147 ~~~~~~i~~~~~~~~~N~~~i~~~~~~~~g~~lyp~~s~~NHSC~PN~~~~~~~-----------~~~~v~a~r~I~~Ge  215 (455)
                      .++.+.+...++.+.+++|.+.    ...|.+|||.++++||||+||+.+.+++           +.++|+|+|+|++||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~----~~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GE  232 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRL----RNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGE  232 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC-------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTS
T ss_pred             ccCHHHHHHHHHHhhccccccc----ccccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCC
Confidence            4567777788888888888763    3467899999999999999999987742           468999999999999


Q ss_pred             eeEEeecCCCCCHHHHHHHHhccCCeee
Q 012829          216 EVLISYIETAGSTMTRQKALKEQYLFTC  243 (455)
Q Consensus       216 Ei~isY~~~~~~~~~R~~~L~~~y~F~C  243 (455)
                      ||||||++.. +.    ..|...|||.+
T Consensus       233 EI~isYG~~~-~n----~~ll~~yGFv~  255 (261)
T d2h2ja2         233 QVYIQYDLNK-SN----AELALDYGFIE  255 (261)
T ss_dssp             BCEECSCSSC-CH----HHHHHHSSCCC
T ss_pred             EEEEecCCCC-CH----HHHHHhCCCCC
Confidence            9999998643 22    33666999973

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.17  E-value=6.3e-10  Score=93.16  Aligned_cols=138  Identities=14%  Similarity=0.105  Sum_probs=111.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC----ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhc-
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP----FSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVY-  383 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~----~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~-  383 (455)
                      .....+...+..|+|++|+..|++++++....-..    +++....++.+++.+|..+|+|++|+..+++++.++.+.. 
T Consensus        11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~   90 (156)
T d2hr2a1          11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   90 (156)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence            34455777788999999999999999986543211    1233456788999999999999999999999999988654 


Q ss_pred             --CCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHHh
Q 012829          384 --PQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEAS  447 (455)
Q Consensus       384 --g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~~  447 (455)
                        +..++.....++++|.++..+|++++|+..+++|+++.....| +.+....++.++++....|.
T Consensus        91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHHHcC
Confidence              4556777888999999999999999999999999999987766 55667778888877776653

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=99.11  E-value=1.8e-11  Score=97.85  Aligned_cols=49  Identities=24%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             ecccccccCCCCCCCcEEEEe--CCEEEEEEecccCCCCeeEEeecCCCCC
Q 012829          179 LYPVISIINHSCLPNAVLVFE--GRLAVVRAVQHVPKGAEVLISYIETAGS  227 (455)
Q Consensus       179 lyp~~s~~NHSC~PN~~~~~~--~~~~~v~a~r~I~~GeEi~isY~~~~~~  227 (455)
                      ..+.++++||||.|||...+.  +..+.++|+|||++|||||++|++..+.
T Consensus        61 ~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GEEL~~dYg~~yw~  111 (119)
T d2g46a1          61 ALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWL  111 (119)
T ss_dssp             CCSTTSSCCCCSSCCCEEEECSSSSEEEEECSSCBCTTEEECCCCCSSSCC
T ss_pred             ecCCeEEEEecCCcCceEEEECCCCEEEEEECcccCCCCEEEEecChhHhc
Confidence            345688999999999998876  4568999999999999999999987653

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.2e-10  Score=71.50  Aligned_cols=38  Identities=37%  Similarity=0.948  Sum_probs=34.2

Q ss_pred             cCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhh
Q 012829           29 RCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (455)
Q Consensus        29 ~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC   67 (455)
                      .|..|.++ .+.+|++|+.++|||.+||+.+|..|+.+|
T Consensus         1 sC~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C   38 (38)
T d2jw6a1           1 SCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHIC   38 (38)
T ss_dssp             CCSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTT
T ss_pred             CccccCcc-ccccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            38889875 478999999999999999999999999887

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.2e-08  Score=80.45  Aligned_cols=105  Identities=12%  Similarity=0.103  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      +....+.+..++..|+|++|+..|.+++.+     +|.   -..++.+++.+|..+|+|++|++.+.+++.+... .+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NRED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Ccc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHH
Confidence            444556677788999999999999999875     333   3457889999999999999999999999987664 4456


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ++.++..++.+|.++..++++++|+.++++|+..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            7889999999999999999999999999999863

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.5e-08  Score=80.19  Aligned_cols=114  Identities=21%  Similarity=0.168  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      ++..+.+++..++..|++++|+..|.+++.+        +|.-..++.+++.+|..+|++++|+..+.+++.+.     |
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p   68 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----P   68 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHhc-----c
Confidence            3556677888899999999999999999875        34445678889999999999999999999998743     3


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      .++   ..++++|.++..+|++++|+..+++|+++     -|++|.+...+..++
T Consensus        69 ~~~---~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          69 DWG---KGYSRKAAALEFLNRFEEAKRTYEEGLKH-----EANNPQLKEGLQNME  115 (117)
T ss_dssp             TCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHH
T ss_pred             chh---hHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHh
Confidence            444   56899999999999999999999999973     577876665555443

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=98.88  E-value=4.2e-10  Score=103.74  Aligned_cols=64  Identities=25%  Similarity=0.452  Sum_probs=35.5

Q ss_pred             cccccCCCCCCCcEEEE--eC------CEEEEEEecccCCCCeeEEeecCCCCCH-HHHHHHHhccCCeeeec
Q 012829          182 VISIINHSCLPNAVLVF--EG------RLAVVRAVQHVPKGAEVLISYIETAGST-MTRQKALKEQYLFTCTC  245 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~~--~~------~~~~v~a~r~I~~GeEi~isY~~~~~~~-~~R~~~L~~~y~F~C~C  245 (455)
                      .+.++||||.||+.+..  .+      ..+.++|+|||++|||||+.|.+...+. .+.....+....|.|.|
T Consensus       212 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~C  284 (284)
T d1ml9a_         212 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC  284 (284)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred             hhheeeccccCCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCCCCchhhcchhhcccCCceeeC
Confidence            36789999999998753  22      3588999999999999999999876543 23334445466778877

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.5e-10  Score=72.79  Aligned_cols=40  Identities=43%  Similarity=0.987  Sum_probs=35.8

Q ss_pred             CccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhh
Q 012829           27 ISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (455)
Q Consensus        27 ~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC   67 (455)
                      ...|.+|.+. ...+|++|+.++|||.+||..+|..|+.+|
T Consensus         8 ~~~C~~Cg~~-~~~~Cs~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dana1           8 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTC   47 (47)
T ss_dssp             CCCCSSSCCC-CCEECTTTSCSEESSHHHHHHTHHHHTTTC
T ss_pred             CCcCcCCCCh-hhccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            3579999886 467999999999999999999999999887

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.86  E-value=6.6e-08  Score=80.21  Aligned_cols=123  Identities=11%  Similarity=0.036  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc--------cccHHHHHHHHHHHHHhcccHHHHHHHHHHh
Q 012829          304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--------SVNLMQTREKLIKILMELEDWKEALAYCQLT  375 (455)
Q Consensus       304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~--------~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~  375 (455)
                      .+++..+.+++..++..|+|.+|+..|++++......-...        ....+.++.+++.+|..+|+|++|++++.++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            35566777788889999999999999999987643322211        1223456788999999999999999999999


Q ss_pred             hhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          376 IPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       376 l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                      +.+        +|.-.-.++++|.++..+|++++|+..+++|+++     .|+++.+...+..+
T Consensus        94 l~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~  144 (153)
T d2fbna1          94 LKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----NPNNLDIRNSYELC  144 (153)
T ss_dssp             HHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHH
T ss_pred             ccc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence            874        3444568999999999999999999999999986     47777665544433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.6e-08  Score=81.58  Aligned_cols=114  Identities=12%  Similarity=0.055  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      .++..+..++..++..|+|++|+..|++++++        +|.-...+.+++.+|...|++++|+..+++++..-     
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-----   74 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----   74 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-----
Confidence            45666777888999999999999999999875        34456678899999999999999999999998853     


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHH
Q 012829          385 QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKL  439 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l  439 (455)
                         |.....++.+|.++..+|++++|+..+++|+.+     .|+++.....+..+
T Consensus        75 ---p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~~~~~~l~~~  121 (159)
T d1a17a_          75 ---KKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKDAKMKYQEC  121 (159)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHH
T ss_pred             ---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH
Confidence               444466899999999999999999999999885     57777665544433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=3.3e-08  Score=85.29  Aligned_cols=102  Identities=12%  Similarity=0.085  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ++.+.+.+..++..|+|++|+..|++++.+        +|.-..++.+++.+|...|+|++|+..+.+++.+        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            455667788889999999999999999876        2334567888999999999999999999999874        


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      .|.....++++|.++..+|++++|+..+++|+.+--..
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            34445679999999999999999999999999876543

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.1e-10  Score=72.18  Aligned_cols=42  Identities=38%  Similarity=0.844  Sum_probs=37.3

Q ss_pred             CCCccCccccCcCCCcCCCCCCccccCCHHHhHhhhhhhHHhh
Q 012829           25 SSISRCDGCFASSNLKKCSACQVVWYCGSNCQKLDWKLHRLEC   67 (455)
Q Consensus        25 ~~~~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~~~~~H~~EC   67 (455)
                      .....|..|.++ .+..|++|+.++|||++||+.+|..|+.+|
T Consensus         6 ~~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dj8a1           6 DSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHIC   47 (47)
T ss_dssp             CCSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTS
T ss_pred             cCCCcCCCCCcc-ccccCCCCCCeeeCCHHHHHHHHHHHhhhC
Confidence            357889999975 467899999999999999999999999887

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1e-07  Score=80.47  Aligned_cols=126  Identities=12%  Similarity=0.112  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc-------cccHHHHHHHHHHHHHhcccHHHHHHHHHHhh
Q 012829          304 ASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF-------SVNLMQTREKLIKILMELEDWKEALAYCQLTI  376 (455)
Q Consensus       304 ~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~-------~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l  376 (455)
                      ...+..+.+.+..++..|++++|+..|++++..........       +.....++.+++.+|..+|+|++|+.+++++|
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            34566777888889999999999999999988643222211       23344567789999999999999999999999


Q ss_pred             hhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          377 PVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       377 ~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      .+-     |.+   ...++.+|.++..+|++++|+..|++|+++     .|+++.+...+..+...
T Consensus        90 ~~~-----p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          90 ELD-----SNN---EKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHC-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHH
T ss_pred             hcc-----ccc---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHH
Confidence            852     344   456899999999999999999999999884     58888777666555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.79  E-value=1.4e-07  Score=79.35  Aligned_cols=123  Identities=15%  Similarity=0.212  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCC-------ccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhh
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHP-------FSVNLMQTREKLIKILMELEDWKEALAYCQLTIP  377 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~-------~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~  377 (455)
                      ..+..+.+.+..++..|+|.+|+..|++++.........       .+.....++.+++.+|..+|+|++|+.++.+++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            456677788889999999999999999998865332222       2334556678899999999999999999999987


Q ss_pred             hHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          378 VYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       378 ~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      +        +|.-...++++|.++..+|++++|+..+++|+++     .|+++.+...+..+.
T Consensus        93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-----~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNKAARLQIFMCQ  142 (168)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHH
T ss_pred             c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH
Confidence            5        3444577999999999999999999999999874     577776655444443

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3e-09  Score=90.16  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             cccccCCCCCCCcEEEE---e--CCEEEEEEecccCCCCeeEEeecCCC
Q 012829          182 VISIINHSCLPNAVLVF---E--GRLAVVRAVQHVPKGAEVLISYIETA  225 (455)
Q Consensus       182 ~~s~~NHSC~PN~~~~~---~--~~~~~v~a~r~I~~GeEi~isY~~~~  225 (455)
                      .+.++||||.||+.+..   +  +..+.++|+|+|++|||||++|+...
T Consensus        98 ~~rfiNHsc~pN~~~~~~~~~~~~~~i~~~A~RdI~~GEEL~~dYG~~~  146 (171)
T d2f69a2          98 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH  146 (171)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCS
T ss_pred             cceeeEccCCCCceEEEEEecCCCeEEEEEEccCcCCCCEEEEEeCCCC
Confidence            46689999999997642   2  23578999999999999999998543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.71  E-value=2.4e-07  Score=77.95  Aligned_cols=127  Identities=13%  Similarity=0.157  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcc--------cCCccccHHHHHHHHHHHHHhcccHHHHHHHHH
Q 012829          302 KIASEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKL--------YHPFSVNLMQTREKLIKILMELEDWKEALAYCQ  373 (455)
Q Consensus       302 ~~~~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~--------l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~  373 (455)
                      .+...+..+...+..+...|+|.+|+..|.+++......        ....++....++.+++.+|..+|+|++|+..+.
T Consensus        22 ~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~  101 (169)
T d1ihga1          22 KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL  101 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhh
Confidence            344445555666777888999999999998887643211        112245667788899999999999999999999


Q ss_pred             HhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHH
Q 012829          374 LTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEE  441 (455)
Q Consensus       374 ~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~  441 (455)
                      +++.+     -|.+   +..++.+|.++..+|++++|+..+++|+++     .|+.+.+...+..+..
T Consensus       102 ~al~~-----~p~~---~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1         102 EALEI-----DPSN---TKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHTT-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred             hhhhh-----hhhh---hhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence            99874     2344   466999999999999999999999999985     5667665554444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.2e-07  Score=75.31  Aligned_cols=110  Identities=13%  Similarity=0.070  Sum_probs=84.0

Q ss_pred             HHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc---ccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          314 TLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       314 a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      +..+.+.+++++|++.|++++.+        +|....++.++|.+++..   +++++|+.++++++..      ...|..
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~~~   71 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQ   71 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCchH
Confidence            33455667889999999999875        455567888999999764   5666777776665541      112445


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      ...+++||.+|..+|++++|++++++|+++     .|+|+....++..+++.
T Consensus        72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~-----~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQT-----EPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHH
Confidence            568999999999999999999999999995     59998877777666554

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.53  E-value=2.7e-08  Score=90.17  Aligned_cols=42  Identities=21%  Similarity=0.338  Sum_probs=34.7

Q ss_pred             ccccCCCCCCCcEEE--EeC------CEEEEEEecccCCCCeeEEeecCC
Q 012829          183 ISIINHSCLPNAVLV--FEG------RLAVVRAVQHVPKGAEVLISYIET  224 (455)
Q Consensus       183 ~s~~NHSC~PN~~~~--~~~------~~~~v~a~r~I~~GeEi~isY~~~  224 (455)
                      +.++||||.||+.+.  +.+      ..+.+.|+|+|++|||||+.|++.
T Consensus       213 aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~  262 (269)
T d1mvha_         213 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGA  262 (269)
T ss_dssp             GGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTT
T ss_pred             eEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCC
Confidence            457899999999764  322      258899999999999999999865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.50  E-value=3e-07  Score=71.67  Aligned_cols=91  Identities=12%  Similarity=-0.029  Sum_probs=77.0

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      +.+..++..|++.+|+..+++++.+     .|.   -..+...++.++...|++++|+.++++++.+        +|.-.
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~   84 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQK-----EPE---REEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDI   84 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-----STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccc-----ccc---cchhhhhhhhhhhhhhhHHHhhccccccccc--------ccccc
Confidence            4566678899999999999999875     233   3577888999999999999999999999885        24445


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAV  418 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~  418 (455)
                      ..++.||.++..+|++++|++.+++++
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            678999999999999999999999875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.48  E-value=1.1e-06  Score=74.61  Aligned_cols=126  Identities=7%  Similarity=-0.002  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCc--------------cccHHHHHHHHHHHHHhcccHHHHHH
Q 012829          305 SEVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPF--------------SVNLMQTREKLIKILMELEDWKEALA  370 (455)
Q Consensus       305 ~e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~--------------~~~~~~~~~~L~~~~~~~g~~~~A~~  370 (455)
                      ..++.+.+.+......|++++|...|.+++.+...-+-+.              ....+.+..+++.++...|+|++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            3456667777788899999999999999998754322111              12244677889999999999999999


Q ss_pred             HHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC-ChhHHHHHHH
Q 012829          371 YCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN-SPFMKELILK  438 (455)
Q Consensus       371 ~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~-hp~~~~~~~~  438 (455)
                      ++++++..        +|.-...+..|+.++..+|++++|+..|+++.+.+...+|-+ .|.+..+...
T Consensus        89 ~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~  149 (179)
T d2ff4a2          89 ELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  149 (179)
T ss_dssp             HHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence            99999883        344456788999999999999999999999999999999987 5555555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8.4e-07  Score=66.85  Aligned_cols=86  Identities=9%  Similarity=-0.030  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCC
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNS  429 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~h  429 (455)
                      +-...++.++..+|+|.+|+.++++++...... +..++..+..+++||.++..+|++++|+.++++|+++     -|+|
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~~   79 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPEH   79 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcCC
Confidence            345689999999999999999999999877643 4456677899999999999999999999999999986     5888


Q ss_pred             hhHHHHHHHHHH
Q 012829          430 PFMKELILKLEE  441 (455)
Q Consensus       430 p~~~~~~~~l~~  441 (455)
                      +.+..-+..++.
T Consensus        80 ~~a~~Nl~~~~~   91 (95)
T d1tjca_          80 QRANGNLKYFEY   91 (95)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            865544444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=5.1e-07  Score=77.65  Aligned_cols=97  Identities=16%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      ++..+++++......|+|++|++.+.++        .+.++   .+..+++.+|..+|++++|++.+.+++++-      
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~~---~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------   66 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV--------QDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRD------   66 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS--------SSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc--------CCCCH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHh------
Confidence            4557788888999999999999877532        22333   467899999999999999999999999742      


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhc
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEIL  421 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~  421 (455)
                        |..+..++++|.++..+|++++|++.+++|+..+
T Consensus        67 --p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          67 --KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             --hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence              4446779999999999999999999999999754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.4e-06  Score=77.79  Aligned_cols=99  Identities=10%  Similarity=0.068  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCC
Q 012829          306 EVNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQ  385 (455)
Q Consensus       306 e~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~  385 (455)
                      ....+...+..+...|++++|+..|++++.+     .|+   -..++..++.+|..+|++++|+..+++++.+-     |
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p  102 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----P  102 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCC---CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-----h
Confidence            3455667788889999999999999999875     233   35678899999999999999999999999852     3


Q ss_pred             CChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          386 FHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       386 ~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .+   +..++++|.++..+|++++|++.+++|+++
T Consensus       103 ~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         103 TY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             TC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hh---hhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            33   356899999999999999999999999886

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=8.7e-06  Score=74.31  Aligned_cols=128  Identities=13%  Similarity=-0.012  Sum_probs=101.3

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+..+...|+|++|++.|+++.++....  .+++..+.++.+++.+|..+|++++|++++++++.++...  ......+.
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~  118 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGAN  118 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHH
Confidence            3555678899999999999999886553  3345678899999999999999999999999999998764  34555678


Q ss_pred             HHHHHHHHhhh-cCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWF-LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAEA  446 (455)
Q Consensus       393 ~l~~La~l~~~-~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~~  446 (455)
                      .+.++|.++.. .|++++|+.++++|+++....  ...+....+...+..+...+
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~  171 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALD  171 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHc
Confidence            89999998865 699999999999999988765  33344566666666664443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.6e-06  Score=76.26  Aligned_cols=118  Identities=18%  Similarity=0.159  Sum_probs=87.6

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGL  392 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~  392 (455)
                      .+......|++++|+..+++++..     .|   ....++..++.+|...|++++|++++++++..     -|.+   +.
T Consensus       178 l~~~~~~~~~~~~A~~~~~~al~~-----~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~  241 (323)
T d1fcha_         178 LGVLFNLSGEYDKAVDCFTAALSV-----RP---NDYLLWNKLGATLANGNQSEEAVAAYRRALEL-----QPGY---IR  241 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HH
T ss_pred             hHHHHHHHHHHhhhhccccccccc-----cc---ccccchhhhhhcccccccchhHHHHHHHHHHH-----hhcc---HH
Confidence            455566789999999999988764     23   33567788999999999999999999998874     2344   45


Q ss_pred             HHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCC---ChhHHHHHHHHHHHHHHH
Q 012829          393 QYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTN---SPFMKELILKLEEAQAEA  446 (455)
Q Consensus       393 ~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~---hp~~~~~~~~l~~~~~~~  446 (455)
                      .++++|.++..+|++++|+..+++|+++.....++.   +.....+...|..+...+
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~  298 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML  298 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHc
Confidence            689999999999999999999999999877665543   333344444455554444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.4e-06  Score=70.08  Aligned_cols=114  Identities=10%  Similarity=-0.012  Sum_probs=88.7

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHh-------h
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQR-------V  382 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~-------~  382 (455)
                      ..+.+..+...|++++|+..|++++++        ++....+..+++.++..+|++++|+..+++++...+.       .
T Consensus        39 ~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          39 CFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            456777888999999999999999875        3455678889999999999999999999999864321       1


Q ss_pred             cC-CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHH
Q 012829          383 YP-QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKE  434 (455)
Q Consensus       383 ~g-~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~  434 (455)
                      +| ..++.-+-.++++|.++..+|++++|+..+.+|+.+-.   .+.|..+..
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~---~~~~~~~~~  160 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS---EPRHSKIDK  160 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---SGGGGHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CcchHHHHH
Confidence            22 22333456789999999999999999999999998643   245554433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=2.3e-05  Score=71.84  Aligned_cols=126  Identities=13%  Similarity=0.049  Sum_probs=103.2

Q ss_pred             HHHHhhhcCChHHHHHHHHHHHHHhhcccCCcc-ccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          313 KTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFS-VNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       313 ~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~-~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      .|......|++++|+..++++++..    +.++ +..+.++..++.+|...|++++|+.++++++......  ++++..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~   91 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYAL   91 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC----cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cchHHHH
Confidence            4666788999999999999997642    2222 3345678889999999999999999999999887653  4667788


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHH
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~  444 (455)
                      ..+..++.++...|++.+|...+.+|+.+.....++.++....+...+..+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  144 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  144 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999888877666665555543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.4e-05  Score=74.47  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=81.3

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ...+..+...|++.+|+..++.+...        .+........++.++...|++++|++++++++++        +|..
T Consensus       275 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~  338 (388)
T d1w3ba_         275 CNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEF  338 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC
Confidence            34455566677888888877766543        2233455677888899999999999999988874        3444


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~~~~  445 (455)
                      +..++++|.++..+|++++|+..+++|+++     -|+++   +....|..+..+
T Consensus       339 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l-----~P~~~---~a~~~lg~~~~~  385 (388)
T d1w3ba_         339 AAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFA---DAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-----CTTCH---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHH
Confidence            567899999999999999999999999975     45655   445555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=8.1e-05  Score=67.60  Aligned_cols=114  Identities=17%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh-cccHHHHHHHHHHhhhhHHhhcCCC
Q 012829          308 NILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME-LEDWKEALAYCQLTIPVYQRVYPQF  386 (455)
Q Consensus       308 ~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~-~g~~~~A~~~~~~~l~~~~~~~g~~  386 (455)
                      ..+.+.+..+...|++++|++.+++++.+....  ........+...++.+|.. .|++++|++++++++.+++..  ..
T Consensus        78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~  153 (290)
T d1qqea_          78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QS  153 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--Cc
Confidence            345556677778899999999999998876543  2344556778889988854 699999999999999987754  34


Q ss_pred             ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhcc
Q 012829          387 HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITH  425 (455)
Q Consensus       387 hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~  425 (455)
                      .+..+..+.++|.++..+|++++|++.+++++.+....-
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            456788899999999999999999999999998776553

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.4e-05  Score=74.42  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=76.8

Q ss_pred             HHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHH
Q 012829          312 KKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLG  391 (455)
Q Consensus       312 ~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~  391 (455)
                      +.|...+..|++++|+..++++++.     .|.+   ..++..++.+|...|++++|+.++++++..        +|..+
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~   67 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQ-----EPDN---TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLA   67 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            3456677889999999999998764     3444   356778999999999999999999998874        23345


Q ss_pred             HHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          392 LQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       392 ~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ..++.+|.++..+|++++|+..+.++...
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~   96 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRL   96 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccccccccccccc
Confidence            67899999999999999999999998874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.1e-05  Score=71.05  Aligned_cols=96  Identities=9%  Similarity=-0.067  Sum_probs=79.6

Q ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          311 SKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       311 ~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      ++.+..++..|++++|+..++++++.        +|.-..++..++.+|...|++++|+.++.+++.+.     |.+   
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---   86 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-----PDN---   86 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-----ccc---
Confidence            34577788899999999999999863        33345678889999999999999999999998752     334   


Q ss_pred             HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          391 GLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      ...++.+|.++...|++++|...+.+++.+..
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             ccccccccccccccccccccccchhhHHHhcc
Confidence            45688999999999999999999999987643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=0.00017  Score=65.75  Aligned_cols=116  Identities=13%  Similarity=0.090  Sum_probs=100.2

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+...+..+...|++++|+..+++++.+...  .+..+..+.+...++..+...|++..|...+.+++.......++.++
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~  130 (366)
T d1hz4a_          53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  130 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhh
Confidence            3445566778889999999999999887543  24456677888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccC
Q 012829          389 LLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHG  426 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G  426 (455)
                      ..+..+..+|.++...|++++|...+.++.........
T Consensus       131 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_         131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999999999988766533

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.84  E-value=4.8e-05  Score=62.33  Aligned_cols=97  Identities=11%  Similarity=0.072  Sum_probs=71.4

Q ss_pred             HHHHHHH--HHHHHhcccHHHHHHHHHHhhhhHHhhcC----CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          349 MQTREKL--IKILMELEDWKEALAYCQLTIPVYQRVYP----QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       349 ~~~~~~L--~~~~~~~g~~~~A~~~~~~~l~~~~~~~g----~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      ..+...+  +..+...|+|++|+..+++++.+.+....    ..++..+..+.++|.++..+|++++|+..+++|+++..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3344444  56777889999999999999998887643    22455688899999999999999999999999999988


Q ss_pred             hccC---CCChhHHHHHHHHHHHHHH
Q 012829          423 ITHG---TNSPFMKELILKLEEAQAE  445 (455)
Q Consensus       423 ~~~G---~~hp~~~~~~~~l~~~~~~  445 (455)
                      ....   ..++....+...+..+..+
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~  112 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDG  112 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHH
Confidence            7533   3344444444444444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=8.8e-05  Score=55.21  Aligned_cols=85  Identities=7%  Similarity=-0.067  Sum_probs=66.8

Q ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH
Q 012829          310 LSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL  389 (455)
Q Consensus       310 l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~  389 (455)
                      .++.+..++..|++.+|+.-+++++++... -....+....++.+|+.++..+|++++|++++++++.+-     |+|+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-----P~~~~   81 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-----PEHQR   81 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-----cCCHH
Confidence            345677788999999999999999887543 233456678899999999999999999999999999853     67764


Q ss_pred             HHHHHHHHHHHhhh
Q 012829          390 LGLQYYTCGKLEWF  403 (455)
Q Consensus       390 ~~~~l~~La~l~~~  403 (455)
                         .+++++.+...
T Consensus        82 ---a~~Nl~~~~~~   92 (95)
T d1tjca_          82 ---ANGNLKYFEYI   92 (95)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHH
Confidence               46666665443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.00011  Score=58.02  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=64.6

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      ..+++..+...|+|++|+.++.+++.+        +|.....++++|.++..+|++++|+..+.+|+++-.... ..++.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~   77 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQ   77 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HHHHH
Confidence            456888999999999999999999985        233456799999999999999999999999998765543 33444


Q ss_pred             HHHHHHHHHHHHH
Q 012829          432 MKELILKLEEAQA  444 (455)
Q Consensus       432 ~~~~~~~l~~~~~  444 (455)
                      ...+...+.+...
T Consensus        78 ~a~~~~~lg~~~~   90 (128)
T d1elra_          78 IAKAYARIGNSYF   90 (128)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4445444444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.49  E-value=0.00021  Score=57.68  Aligned_cols=101  Identities=13%  Similarity=0.100  Sum_probs=64.4

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc----------cHHHHHHHHHHhhhhHHhhcCCCChHH
Q 012829          321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE----------DWKEALAYCQLTIPVYQRVYPQFHPLL  390 (455)
Q Consensus       321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g----------~~~~A~~~~~~~l~~~~~~~g~~hp~~  390 (455)
                      +.|++|+..+++++++     .|++   ..++.+++.++...+          .+++|+..+++++.+        .|.-
T Consensus        11 ~~fe~A~~~~e~al~~-----~P~~---~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--------~P~~   74 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKS-----NPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DPKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred             ccHHHHHHHHHHHHhh-----CCcc---hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--------cchh
Confidence            3567888888888764     3444   455667777776544          446677777766653        2333


Q ss_pred             HHHHHHHHHHhhhcCC-----------cHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          391 GLQYYTCGKLEWFLGD-----------TENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       391 ~~~l~~La~l~~~~g~-----------~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      ...++++|.++..+|+           +++|.+.+++|++     .-|+++.+...+.....+
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~-----l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-----EQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHTH
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc-----cCCCHHHHHHHHHHHHHH
Confidence            4568889999887654           3555555555554     347888877766554433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00011  Score=64.76  Aligned_cols=68  Identities=12%  Similarity=-0.021  Sum_probs=59.3

Q ss_pred             cccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          345 SVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       345 ~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ......++..++.+|...|+|++|+..+++++.+     -|++|   ..++++|.++..+|++++|+..+++|+++
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCCCH---HHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence            4456778889999999999999999999999885     24554   45899999999999999999999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00028  Score=59.50  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          351 TREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       351 ~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .+...+..+...|+|++|+.++.+++.+-        |..+..++++|.+|..+|++++|+..+.+|+++
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            34467889999999999999999999852        444577999999999999999999999999875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.26  E-value=0.00096  Score=50.86  Aligned_cols=68  Identities=10%  Similarity=-0.055  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      ...++..+...|++++|+..+++++...     |.+   ...++.+|.++...|++++|+..+++|+++     .|+++.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   85 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE-----PER---EEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDIA   85 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc-----ccc---chhhhhhhhhhhhhhhHHHhhccccccccc-----cccccc
Confidence            3567888999999999999999998742     344   567899999999999999999999999986     366554


Q ss_pred             H
Q 012829          432 M  432 (455)
Q Consensus       432 ~  432 (455)
                      +
T Consensus        86 a   86 (112)
T d1hxia_          86 V   86 (112)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00087  Score=61.37  Aligned_cols=82  Identities=9%  Similarity=-0.072  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh
Q 012829          323 HQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW  402 (455)
Q Consensus       323 ~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~  402 (455)
                      +++|+..+++++++        ++.-..+..+++.++..+|++++|++++.+++..        +|.-...++++|.++.
T Consensus        94 ~~eal~~~~~al~~--------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~  157 (315)
T d2h6fa1          94 LHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHH
Confidence            55555555555443        3344555666666666666666666666666653        2333355667777777


Q ss_pred             hcCCcHHHHHHHHHHHHh
Q 012829          403 FLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       403 ~~g~~~eA~~~l~~A~~i  420 (455)
                      .+|++++|+..+.+|+++
T Consensus       158 ~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         158 EFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            777777777777777664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0007  Score=55.13  Aligned_cols=68  Identities=13%  Similarity=0.091  Sum_probs=56.7

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      +...+..|...|+|++|+..+.+++..        +|.-...++++|.++..+|++++|+..+.+|+++     .|+++.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-----~p~~~~   79 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYIK   79 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH-----cccchH
Confidence            334677889999999999999999984        3555677999999999999999999999999986     366653


Q ss_pred             H
Q 012829          432 M  432 (455)
Q Consensus       432 ~  432 (455)
                      .
T Consensus        80 a   80 (159)
T d1a17a_          80 G   80 (159)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.001  Score=60.88  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=39.0

Q ss_pred             cCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcc-cHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829          320 CGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELE-DWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  398 (455)
Q Consensus       320 ~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g-~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  398 (455)
                      ++.+++|+..+.+++++        +|.-..+..+.+.++...| ++++|+.++.+++.+        +|.-...++++|
T Consensus        56 ~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~~~  119 (315)
T d2h6fa1          56 DERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRR  119 (315)
T ss_dssp             TCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHHHh
Confidence            34445555555555443        2222333444444444443 245555555554442        122233444555


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHh
Q 012829          399 KLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       399 ~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .++..+|++++|+..+.+|+++
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~  141 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQ  141 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHhhhhhh
Confidence            5555555555555555555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.02  E-value=0.0024  Score=52.41  Aligned_cols=72  Identities=8%  Similarity=0.048  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCC-------ChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          349 MQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQF-------HPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       349 ~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~-------hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      +......+..+...|+|++|+.++.+++...+..++..       .+.....+.++|.++..+|++++|+..+.+|+.+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            34455678889999999999999999999887665532       2335667789999999999999999999999976

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0028  Score=52.16  Aligned_cols=78  Identities=14%  Similarity=0.037  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCC-------hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFH-------PLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h-------p~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                      ......+..+...|+|++|+..+++++.......+..+       +.....+.++|.++..+|++++|+.++.+|+++  
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--   91 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--   91 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--
Confidence            34456778899999999999999999998765555433       234566778999999999999999999999986  


Q ss_pred             hccCCCChhH
Q 012829          423 ITHGTNSPFM  432 (455)
Q Consensus       423 ~~~G~~hp~~  432 (455)
                         .|+++..
T Consensus        92 ---~p~~~~a   98 (170)
T d1p5qa1          92 ---DSNNEKG   98 (170)
T ss_dssp             ---CTTCHHH
T ss_pred             ---cccchhh
Confidence               4666543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0011  Score=50.86  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=54.7

Q ss_pred             HHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChh
Q 012829          353 EKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPF  431 (455)
Q Consensus       353 ~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~  431 (455)
                      ..-+..+...|+|++|+.++.++|..        .|.-...++++|.++..+|++++|+..+.+|+.+     .|+++.
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   72 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWGK   72 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh-----ccchhh
Confidence            34677899999999999999999874        2444567999999999999999999999999985     355554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00064  Score=66.58  Aligned_cols=85  Identities=14%  Similarity=0.060  Sum_probs=61.3

Q ss_pred             hhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHH
Q 012829          318 TSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTC  397 (455)
Q Consensus       318 ~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~L  397 (455)
                      ...|++++|...++.++.+.          ..++..+|+.++...|+|++|+.++++++.+        .|..|..+++|
T Consensus       131 ~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~L  192 (497)
T d1ya0a1         131 NKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQL  192 (497)
T ss_dssp             ------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHH
Confidence            34456666665555554321          2356778999999999999999999999986        47778889999


Q ss_pred             HHHhhhcCCcHHHHHHHHHHHHh
Q 012829          398 GKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       398 a~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      |.++...|++.+|+.+|.||+.+
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhC
Confidence            99999999999999999999864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0051  Score=47.30  Aligned_cols=83  Identities=14%  Similarity=-0.012  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhc---ccHHHHHHHHHHhhhhHHhhcCCCChH-HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          349 MQTREKLIKILMEL---EDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       349 ~~~~~~L~~~~~~~---g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      .+++.+.|.++...   .++++|+.+++.++.        .+|. ..-.+|.||..++.+|+|++|..+++++++|    
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~--------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh--------cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc----
Confidence            57888888888755   456677777666543        1232 3477899999999999999999999999984    


Q ss_pred             cCCCChhHHHHHHHHHHHHH
Q 012829          425 HGTNSPFMKELILKLEEAQA  444 (455)
Q Consensus       425 ~G~~hp~~~~~~~~l~~~~~  444 (455)
                       .|+|.....+...+++...
T Consensus       103 -eP~n~qA~~L~~~Ie~~~~  121 (124)
T d2pqrb1         103 -ERNNKQVGALKSMVEDKIQ  121 (124)
T ss_dssp             -CTTCHHHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHh
Confidence             6999999988888876543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.66  E-value=0.0091  Score=47.89  Aligned_cols=69  Identities=9%  Similarity=-0.044  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH--------HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHh
Q 012829          352 REKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL--------LGLQYYTCGKLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       352 ~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~--------~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ...-+..+...|+|.+|+..+.+++..+..........        ....+.++|.++..+|++++|+..+++|+++
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            34456677889999999999999998776544433322        2356778999999999999999999999875

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.61  E-value=0.0053  Score=54.42  Aligned_cols=99  Identities=15%  Similarity=0.008  Sum_probs=71.1

Q ss_pred             HhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHH---------------
Q 012829          316 ALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQ---------------  380 (455)
Q Consensus       316 ~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~---------------  380 (455)
                      ..+.+|++++|+..+++.++.        +|.-...+..|+.+|...|+|++|+..++.++....               
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            456789999999999988764        455566788999999999999999998887654321               


Q ss_pred             -----hhc-C------CCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhch
Q 012829          381 -----RVY-P------QFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILR  422 (455)
Q Consensus       381 -----~~~-g------~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~  422 (455)
                           .+. +      ..+|.-...+...+.++...|++++|...+.+|.+..-
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence                 000 0      12333344455567777778888999888888877553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.41  E-value=0.0058  Score=49.89  Aligned_cols=86  Identities=9%  Similarity=0.021  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCCh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHP  388 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp  388 (455)
                      .+.+.|..+...|++++|+..+.+++++     .|   .-..++..++.+|..+|++++|+..+++++.+     .|+++
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~-----~p---~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n~  145 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEI-----DP---SNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APEDK  145 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhh-----hh---hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH
Confidence            3445677778889999999999999764     33   34567889999999999999999999999984     34566


Q ss_pred             HHHHHHHHHHHHhhhcCCcHHH
Q 012829          389 LLGLQYYTCGKLEWFLGDTENA  410 (455)
Q Consensus       389 ~~~~~l~~La~l~~~~g~~~eA  410 (455)
                      .+   ...|+.+.....+..++
T Consensus       146 ~~---~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         146 AI---QAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HH---HHHHHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHHHHH
Confidence            54   44455555544444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.59  E-value=0.05  Score=44.66  Aligned_cols=76  Identities=16%  Similarity=0.091  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC-C
Q 012829          307 VNILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP-Q  385 (455)
Q Consensus       307 ~~~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g-~  385 (455)
                      +....+.+..+...|++++|+..+++++.+        +|.--.++..|+.++...|++.+|++.+++....+.+-+| .
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            445556677788999999999999998874        3444566788999999999999999999999998888787 3


Q ss_pred             CChHH
Q 012829          386 FHPLL  390 (455)
Q Consensus       386 ~hp~~  390 (455)
                      -.|.+
T Consensus       139 P~~~l  143 (179)
T d2ff4a2         139 PGPTL  143 (179)
T ss_dssp             CCHHH
T ss_pred             cCHHH
Confidence            35554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.023  Score=43.59  Aligned_cols=71  Identities=8%  Similarity=-0.040  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhhhcC---ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          308 NILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       308 ~~l~~~a~~~~~~g---~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      ...++.|..+...+   ++++|+.++++++..      ..++....++.+||.+|...|+|++|+.++++++.+-     
T Consensus        34 ~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~-----  102 (122)
T d1nzna_          34 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-----  102 (122)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC-----
Confidence            44556666665443   445677777666532      1234446788999999999999999999999999843     


Q ss_pred             CCChH
Q 012829          385 QFHPL  389 (455)
Q Consensus       385 ~~hp~  389 (455)
                      |.|+.
T Consensus       103 P~~~~  107 (122)
T d1nzna_         103 PQNNQ  107 (122)
T ss_dssp             TTCHH
T ss_pred             cCCHH
Confidence            56654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.69  E-value=0.033  Score=50.36  Aligned_cols=86  Identities=9%  Similarity=-0.138  Sum_probs=63.0

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHH
Q 012829          319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCG  398 (455)
Q Consensus       319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La  398 (455)
                      ..+..+++...+...+...     |.+..   ....++..+...|++.+|+..+.+++.        .+|.....++.+|
T Consensus       220 ~l~~~~~a~~~~~~~l~~~-----~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~  283 (334)
T d1dcea1         220 FTDPNDQSAWFYHRWLLGR-----AEPLF---RCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLM  283 (334)
T ss_dssp             HHCSSCSHHHHHHHHHHSC-----CCCSS---SCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHH
T ss_pred             HhcchhHHHHHHHHHHHhC-----cchhh---HHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHH
Confidence            3455667777766665432     11111   122345566777899999988777554        7788889999999


Q ss_pred             HHhhhcCCcHHHHHHHHHHHHh
Q 012829          399 KLEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       399 ~l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      .++...|++++|++++++|+++
T Consensus       284 ~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         284 RALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999886

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.54  E-value=0.054  Score=47.55  Aligned_cols=69  Identities=14%  Similarity=0.015  Sum_probs=55.0

Q ss_pred             HHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHH
Q 012829          358 ILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELIL  437 (455)
Q Consensus       358 ~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~  437 (455)
                      -.+..|++++|+..+++++.        .+|.-+..+..||.++...|++++|++.|++|+++     .|+++.....+.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~--------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-----~P~~~~~~~~l~   71 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLR   71 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCcHHHHHHHH
Confidence            45668999999999999887        44666677999999999999999999999999874     466665555444


Q ss_pred             HH
Q 012829          438 KL  439 (455)
Q Consensus       438 ~l  439 (455)
                      .+
T Consensus        72 ~l   73 (264)
T d1zbpa1          72 HL   73 (264)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.27  Score=47.02  Aligned_cols=62  Identities=16%  Similarity=0.069  Sum_probs=52.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhh
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPV  378 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~  378 (455)
                      .+...+..+...|++++|+..|++++.+        +|.....+++||.++...|++.+|+.++.+++.+
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            4455666777889999999999999876        4556677899999999999999999999998864

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.14  E-value=0.078  Score=47.70  Aligned_cols=84  Identities=8%  Similarity=0.008  Sum_probs=48.1

Q ss_pred             ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhc--ccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHH
Q 012829          322 NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMEL--EDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGK  399 (455)
Q Consensus       322 ~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~--g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~  399 (455)
                      .+.+|+..++++++.        +|.-..+...++.++...  +++++|+..+.+++..    .|.+   ....++.+|.
T Consensus        88 ~~~~al~~~~~~l~~--------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~---~~~~~~~~~~  152 (334)
T d1dcea1          88 LVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERN---FHCWDYRRFV  152 (334)
T ss_dssp             HHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh--------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh----Cchh---hhhhhhHHHH
Confidence            344555555555442        232333444555555444  3577787777777664    2222   2223456677


Q ss_pred             HhhhcCCcHHHHHHHHHHHHh
Q 012829          400 LEWFLGDTENAIKSMTEAVEI  420 (455)
Q Consensus       400 l~~~~g~~~eA~~~l~~A~~i  420 (455)
                      ++...|++++|+..+++|+.+
T Consensus       153 ~~~~~~~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         153 AAQAAVAPAEELAFTDSLITR  173 (334)
T ss_dssp             HHHTCCCHHHHHHHHHTTTTT
T ss_pred             HHHhccccHHHHHHHHHHHHc
Confidence            777778888887777776654

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=92.35  E-value=1.2  Score=37.10  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhhhhHHhh--cCCCChHH-HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRV--YPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLEEA  442 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~--~g~~hp~~-~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~~~  442 (455)
                      ++|.+.++.++++.+..  ++|.||.+ |+.++--.-.|..+++.++|.++.++|.+.....-...-..+.+....|+-+
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~~~~~~~~e~~~~ds~~ImqLL  203 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAENSRSDSEQFSENTEKLLKIL  203 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTCCC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence            46888888888887764  56999975 5554444444456899999999988888644322222222345666666666


Q ss_pred             HHHHhh
Q 012829          443 QAEASY  448 (455)
Q Consensus       443 ~~~~~~  448 (455)
                      +..+.-
T Consensus       204 rDNltl  209 (223)
T d3efza1         204 RDNVSQ  209 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.92  E-value=0.22  Score=38.85  Aligned_cols=49  Identities=8%  Similarity=0.007  Sum_probs=33.4

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhccc-----------HHHHHHHHHHhhh
Q 012829          321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELED-----------WKEALAYCQLTIP  377 (455)
Q Consensus       321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~-----------~~~A~~~~~~~l~  377 (455)
                      +.+++|+..+++++++        +|.-..++.+++.+|..+|+           |++|.++++++++
T Consensus        55 ~~~~~Ai~~~~kAl~l--------~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~  114 (145)
T d1zu2a1          55 QMIQEAITKFEEALLI--------DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD  114 (145)
T ss_dssp             HHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh--------cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence            3567788888888765        34445667888988887653           4566666666665

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.73  E-value=0.19  Score=38.14  Aligned_cols=71  Identities=11%  Similarity=-0.059  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhhhcC---ChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcC
Q 012829          308 NILSKKTLALTSCG---NHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       308 ~~l~~~a~~~~~~g---~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      ++.++-|+.+..+.   +..+++.+++.+++.     .|.  ..-+.++.|+..|..+|+|++|+.+++++|.+-     
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~--~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie-----  103 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-----  103 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGG--GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----Cch--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC-----
Confidence            34456666665443   445667776666542     122  234788999999999999999999999998843     


Q ss_pred             CCChHH
Q 012829          385 QFHPLL  390 (455)
Q Consensus       385 ~~hp~~  390 (455)
                      |+|+..
T Consensus       104 P~n~qA  109 (124)
T d2pqrb1         104 RNNKQV  109 (124)
T ss_dssp             TTCHHH
T ss_pred             CCcHHH
Confidence            566654

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=91.53  E-value=0.73  Score=38.56  Aligned_cols=63  Identities=13%  Similarity=0.090  Sum_probs=47.9

Q ss_pred             cccHHHHHHHHHHhhhhHHhhcCCCChHH-HHHHHHHHHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          362 LEDWKEALAYCQLTIPVYQRVYPQFHPLL-GLQYYTCGKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       362 ~g~~~~A~~~~~~~l~~~~~~~g~~hp~~-~~~l~~La~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      .|.-++|...++.+..+...-++|.||.. |+.|+--.-.|.-+++.++|.++.++|.+.+...
T Consensus       136 ~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdea  199 (220)
T d2o8pa1         136 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQ  199 (220)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            45668899999999999988899999975 5555544444556899999999988885544443

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.96  E-value=0.87  Score=38.43  Aligned_cols=80  Identities=14%  Similarity=0.062  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHH-hhhcCCcHHHHHHHHHHHHhchh---ccCCCChhHHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKL-EWFLGDTENAIKSMTEAVEILRI---THGTNSPFMKELILKLEE  441 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l-~~~~g~~~eA~~~l~~A~~i~~~---~~G~~hp~~~~~~~~l~~  441 (455)
                      +.|...++.++.+.+.-+||.||.+.-...|.+.. |..+|+.++|..+-++|.+-...   .+..++  +++....++-
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~~l~~l~ee~--y~ds~~Imql  220 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES--YKDSTLIMQL  220 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGGCCTTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCChhh--HHHHHHHHHH
Confidence            46888899999988888999999864444444444 55689999999887776643322   334443  4666666666


Q ss_pred             HHHHHh
Q 012829          442 AQAEAS  447 (455)
Q Consensus       442 ~~~~~~  447 (455)
                      ++..+.
T Consensus       221 LrdNl~  226 (230)
T d2o02a1         221 LRDNLT  226 (230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665553

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.058  Score=32.96  Aligned_cols=30  Identities=20%  Similarity=0.517  Sum_probs=25.7

Q ss_pred             ccCccccCcCCCcCCCCCCccccCCHHHhHh
Q 012829           28 SRCDGCFASSNLKKCSACQVVWYCGSNCQKL   58 (455)
Q Consensus        28 ~~C~~C~~~~~~~~C~~C~~~~yCs~~C~~~   58 (455)
                      ..|..|.......+||.|.. .|||-+|-+.
T Consensus         8 ~lC~vC~~~~~KY~CP~C~~-~yCSL~CyK~   37 (46)
T d1x4sa1           8 GFCPAGEVQPARYTCPRCNA-PYCSLRCYRT   37 (46)
T ss_dssp             CSSCTTCCEEECEECTTTCC-EESSHHHHHH
T ss_pred             ccChhhhCccccccCCCCCC-ceechHHHhh
Confidence            46888988877899999987 5999999874

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.07  E-value=1.7  Score=37.93  Aligned_cols=82  Identities=10%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhh
Q 012829          324 QEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF  403 (455)
Q Consensus       324 ~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~  403 (455)
                      +++..++++++.    .+.|.+.   ......+..+..+|++++|...+.+++..    .| .++.  ..+...+.+...
T Consensus        81 ~~a~~i~~ral~----~~~p~~~---~l~~~ya~~~~~~~~~~~a~~i~~~~l~~----~~-~~~~--~~w~~~~~~~~~  146 (308)
T d2onda1          81 DEAANIYERAIS----TLLKKNM---LLYFAYADYEESRMKYEKVHSIYNRLLAI----ED-IDPT--LVYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHT----TTTTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHTS----SS-SCTH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HcCCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHHH----hc-CChH--HHHHHHHHHHHH
Confidence            445555555542    2333333   23445566777888888888877776642    22 2222  223455666667


Q ss_pred             cCCcHHHHHHHHHHHH
Q 012829          404 LGDTENAIKSMTEAVE  419 (455)
Q Consensus       404 ~g~~~eA~~~l~~A~~  419 (455)
                      .|.+++|...+++|+.
T Consensus       147 ~~~~~~ar~i~~~al~  162 (308)
T d2onda1         147 AEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHCHHHHHHHHHHHHT
T ss_pred             cCChHHHHHHHHHHHH
Confidence            7778888888887764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=88.77  E-value=1.5  Score=33.06  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=56.3

Q ss_pred             CChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHH
Q 012829          321 GNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYT  396 (455)
Q Consensus       321 g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~  396 (455)
                      .+.++|+..++++.+.       .+   ..+...|+..|..    ..|+++|+++++++.+.       .||   ...++
T Consensus        37 ~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~~   96 (133)
T d1klxa_          37 INKQKLFQYLSKACEL-------NS---GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------NDQ---DGCLI   96 (133)
T ss_dssp             SCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHH
T ss_pred             cCHHHHHHHHhhhhcc-------cc---hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-------Ccc---hHHHH
Confidence            4667777777666432       12   3456778888875    45789999999987652       344   45788


Q ss_pred             HHHHhhh----cCCcHHHHHHHHHHHH
Q 012829          397 CGKLEWF----LGDTENAIKSMTEAVE  419 (455)
Q Consensus       397 La~l~~~----~g~~~eA~~~l~~A~~  419 (455)
                      ||.+|..    ..+.++|..++++|.+
T Consensus        97 Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          97 LGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            8998876    3578899999999876

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=85.92  E-value=1.8  Score=36.43  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhh-hcCCcHHHHHHHHHHHH----hchhccCCCChhHHHHHHHHH
Q 012829          366 KEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEW-FLGDTENAIKSMTEAVE----ILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       366 ~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~-~~g~~~eA~~~l~~A~~----i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      +.|...++.++.+...-++|.||.+.-...|.+..++ ..|+.++|..+-++|.+    .+. +++.++  +.+....|+
T Consensus       148 ~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~ai~~~d-~l~ee~--~~ds~~i~q  224 (236)
T d1o9da_         148 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD-TLGEES--YKDSTLIMQ  224 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHH-HTC-------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh-cCChhh--HHHHHHHHH
Confidence            4678888899888888899999986555555555555 57999998887766654    333 233332  345544555


Q ss_pred             HHHHHH
Q 012829          441 EAQAEA  446 (455)
Q Consensus       441 ~~~~~~  446 (455)
                      -++..+
T Consensus       225 LLrdNl  230 (236)
T d1o9da_         225 LLRDNL  230 (236)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=84.90  E-value=4.7  Score=33.66  Aligned_cols=91  Identities=11%  Similarity=0.004  Sum_probs=59.9

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHh----cccHHHHHHHHHHhhhhHHhhcC
Q 012829          309 ILSKKTLALTSCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILME----LEDWKEALAYCQLTIPVYQRVYP  384 (455)
Q Consensus       309 ~l~~~a~~~~~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~----~g~~~~A~~~~~~~l~~~~~~~g  384 (455)
                      ++.+.+.....++++.+|++.++++.+.       .+   ..+...|+.+|..    ..++..|..+++.+..       
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~-------   66 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-------   66 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc-------
Confidence            4455566667789999999999988643       12   3567788888876    5688888888776543       


Q ss_pred             CCChHHHHHHHHHHHHhhh----cCCcHHHHHHHHHHHH
Q 012829          385 QFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  419 (455)
Q Consensus       385 ~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~~A~~  419 (455)
                      ..||   .....||.++..    ....+.|...+++|.+
T Consensus        67 ~~~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~  102 (265)
T d1ouva_          67 LNYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACD  102 (265)
T ss_dssp             TTCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             cccc---chhhccccccccccccchhhHHHHHHHhhhhh
Confidence            3344   224455555443    3456677777777653

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.22  E-value=6.8  Score=32.59  Aligned_cols=72  Identities=18%  Similarity=0.301  Sum_probs=49.7

Q ss_pred             HHHHHHHHhhhhHHhh-cC-CCChHHHHHHHHH-HHHhhhcCC----------cHHHHHHHHHHHHhchhccCCCChhHH
Q 012829          367 EALAYCQLTIPVYQRV-YP-QFHPLLGLQYYTC-GKLEWFLGD----------TENAIKSMTEAVEILRITHGTNSPFMK  433 (455)
Q Consensus       367 ~A~~~~~~~l~~~~~~-~g-~~hp~~~~~l~~L-a~l~~~~g~----------~~eA~~~l~~A~~i~~~~~G~~hp~~~  433 (455)
                      +-..+|..++.+.... .| ..++..-+-++++ |..+....+          .++|...|++|+++....+.|.||...
T Consensus        89 EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~t~pirL  168 (230)
T d2o02a1          89 ELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRL  168 (230)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence            3456788888877654 44 3455544444444 666654422          246899999999999999999999988


Q ss_pred             HHHHH
Q 012829          434 ELILK  438 (455)
Q Consensus       434 ~~~~~  438 (455)
                      .+...
T Consensus       169 gL~LN  173 (230)
T d2o02a1         169 GLALN  173 (230)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77543

>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.09  E-value=0.31  Score=33.33  Aligned_cols=31  Identities=19%  Similarity=0.518  Sum_probs=23.7

Q ss_pred             hCccCCCCCCccccc----CCCCCCcccCCCCCcC
Q 012829          265 GYRCKDDGCSGFLLR----DSDDKGFTCQQCGLVR  295 (455)
Q Consensus       265 ~~~C~~~~C~g~~~~----~~~~~~~~C~~C~~~~  295 (455)
                      -++|...+|++++.|    +.+++.|.|..|+..-
T Consensus         9 PvrC~r~~C~ayiNP~~~~~~~~~~W~C~~C~~~N   43 (75)
T d2qtva5           9 PVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRN   43 (75)
T ss_dssp             CCBCCSTTTCCBCCTTCCEETTTTEEECTTTCCEE
T ss_pred             CceeCCCCCCcEECCceEEecCCCEEEecccCccC
Confidence            468876679988865    3457889999999753

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.07  E-value=4  Score=35.30  Aligned_cols=93  Identities=12%  Similarity=0.041  Sum_probs=64.1

Q ss_pred             hcCChHHHHHHHHHHHHHhhcccCCccccHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChH-HHHHHHHH
Q 012829          319 SCGNHQEVVSTYKMIEKLQKKLYHPFSVNLMQTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPL-LGLQYYTC  397 (455)
Q Consensus       319 ~~g~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~-~~~~l~~L  397 (455)
                      ..|+.+.|..+++.++..     .|.+   .......+......|++++|..++++++...     +.+|. ....+...
T Consensus       181 ~~~~~~~a~~i~e~~l~~-----~p~~---~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-----~~~~~~~~~iw~~~  247 (308)
T d2onda1         181 CSKDKSVAFKIFELGLKK-----YGDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARF  247 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHH-----HTTC---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHh-----hhhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCChHHHHHHHHHH
Confidence            457888899998888764     2333   3445556777788999999999988877632     23333 22334444


Q ss_pred             HHHhhhcCCcHHHHHHHHHHHHhchhc
Q 012829          398 GKLEWFLGDTENAIKSMTEAVEILRIT  424 (455)
Q Consensus       398 a~l~~~~g~~~eA~~~l~~A~~i~~~~  424 (455)
                      .......|+.+.+.+.++++.+++...
T Consensus       248 ~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         248 LAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            555566799999999999998887544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=81.98  E-value=1.8  Score=36.51  Aligned_cols=60  Identities=13%  Similarity=0.095  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHhhhhHHhhcCCCChHHHHHHHHHHHHhhh----cCCcHHHHHHHHHHHH
Q 012829          350 QTREKLIKILMELEDWKEALAYCQLTIPVYQRVYPQFHPLLGLQYYTCGKLEWF----LGDTENAIKSMTEAVE  419 (455)
Q Consensus       350 ~~~~~L~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~l~~La~l~~~----~g~~~eA~~~l~~A~~  419 (455)
                      ++..+|+..+...+|+++|+++++++.+.       .++   ..+++||.++..    ..++..|..+++++..
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g~~---~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~   66 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL-------KEN---SGCFNLGVLYYQGQGVEKNLKKAASFYAKACD   66 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence            35677888899999999999999998652       233   467889999887    4567778887777654

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=81.08  E-value=13  Score=30.49  Aligned_cols=72  Identities=14%  Similarity=0.077  Sum_probs=51.5

Q ss_pred             HHHHHHHhhhhHHhhcCCCChHHHHHHHH-HHHHhhh-----cCCcHHHHHHHHHHHHhchhccCCCChhHHHHHHHHH
Q 012829          368 ALAYCQLTIPVYQRVYPQFHPLLGLQYYT-CGKLEWF-----LGDTENAIKSMTEAVEILRITHGTNSPFMKELILKLE  440 (455)
Q Consensus       368 A~~~~~~~l~~~~~~~g~~hp~~~~~l~~-La~l~~~-----~g~~~eA~~~l~~A~~i~~~~~G~~hp~~~~~~~~l~  440 (455)
                      -...|..++.+...++.+ +|..-+-+++ -|..+..     .|..++|...+++|.++....+.|.||....+.-...
T Consensus        95 l~~~c~~i~~lid~~L~~-~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~S  172 (220)
T d2o8pa1          95 IKAFLQSFEDCVDRLVEK-SFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLA  172 (220)
T ss_dssp             HHHHHHHHHHHHHTCCCC-SHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence            344577788888887765 5643333333 3555443     5777899999999999999999999999887665443