Citrus Sinensis ID: 012836

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
Protein Sequence
MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLRQHRKRHTEHTMEP
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHccccHHHHHHHHccccHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MTSYSTRMDRRLIAAALTGDVQTLQQLfvenplilhtpafasagnplhvasayghvDFVKEIIRLKPdfakevnqdgfspmhmasaNGQIDVVRGLMKFDQKlchlqgperktplhfaAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMkdkqgntalHLATWKRECQVVELLLShganasgglevnatnhsglTALDVLLsfpseagdrEIEEIFWSAGAMrmrdltlspirspephgqtsvdncisteanlrqpndLMEYfkfkkgrdspgetLSALLVVAVLVATTtfqfgvnppggvwqeyykpdrkngttsgkaysagqsilgstdpvgfGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLRQHRkrhtehtmep
Flexible Loop (DISEMBL)
mtsystrmDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLqgperktplhfAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLhlavknnqfevVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLSALLVVAVLVATTtfqfgvnppggvwQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLRQHRKrhtehtmep
Low Complexity Region (SEG)
MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGEtlsallvvavlvatttFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLRQHRKRHTEHTMEP
Disordered region (IsUnstruct)
**********RLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMR*********************************LMEYFKFK*******ETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYK***************GQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLR*************
Disordered Region (DISOPRED)
**S***RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVD*****************YF***KG*DS*GETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTT**KAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLRQHRKR*T******
Disordered Region (DISEMBL)
********DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLRQH***********
Disordered Region (DISPRO)
*****TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKP******TSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLRQHRKRH*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPAVIALAAYLLRQHRKRHTEHTMEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	455	2.2.26 [Sep-21-2011]
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.826	0.706	0.259	6e-27
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.687	0.530	0.280	6e-22
Q8VHK1	1201	Caskin-2 OS=Mus musculus	yes	no	0.430	0.163	0.321	2e-15
Q8WXE0	1202	Caskin-2 OS=Homo sapiens	yes	no	0.430	0.163	0.316	2e-15
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.670	0.582	0.243	4e-15
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.428	0.103	0.303	2e-14
A5PMU4	1280	Ankyrin repeat and steril	yes	no	0.382	0.135	0.323	4e-14
Q6DD51	1205	Caskin-2 OS=Xenopus laevi	N/A	no	0.432	0.163	0.295	4e-14
Q9ERK0	786	Receptor-interacting seri	no	no	0.351	0.203	0.312	8e-14
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.389	0.095	0.317	8e-14

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  122 bits (306), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 186/424 (43%), Gaps = 48/424 (11%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           N  HVA+  GH+  VKE++RL P+  +  +    SP++ A+    +++V  ++  D    
Sbjct: 96  NAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCA 155

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
            +     KT LH A   G + +V  ++            + +T LH+AVK    EVV  +
Sbjct: 156 MIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEI 215

Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL 224
           +          ILN +D++GNTALH+AT K   Q+  LLL+  A     +EVNA N+   
Sbjct: 216 LQ-----ADYTILNERDRKGNTALHIATRKARPQITSLLLTFTA-----IEVNAINNQKE 265

Query: 225 TALDVLLSFPSEAGDREIEEIFWSAGAMRMR-----DLTLSPIRSPEPHGQTSVDNCIST 279
           TA+D+           EI E    AGA   R     D   +  R+            +  
Sbjct: 266 TAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQN 325

Query: 280 EANLRQPNDLMEYFKFKKGRDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPD 339
           E   R+ + + +  + K  R++   T +++ VVAVL A+  F    N PG  + E     
Sbjct: 326 EKTNRRVSGIAKELR-KLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTE----- 379

Query: 340 RKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFN--SVGFSLSIEMIRILTTNFPLQLELQ 397
              G+  G+A  AG++        GF +F   N  S+  SL++ +++I    +  + + +
Sbjct: 380 ---GSHVGQANIAGRT--------GFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKK 428

Query: 398 L-------------CFFAMYVTYTNAVITIAPDGMSLFVTLTVA-IMPAVIALAAYLLRQ 443
           +             C F  ++    AV+      M++ +TL  A I+   +A   Y + +
Sbjct: 429 VVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFR 488

Query: 444 HRKR 447
            R R
Sbjct: 489 QRFR 492

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  105 bits (263), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 148/349 (42%), Gaps = 36/349 (10%)

Query: 42  SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQ 101
           S  +PLH+A+  GH   V+ ++      ++       +P+  A+  G  +VV  L+    
Sbjct: 163 SGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAG 222

Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
            L  +     K  LH AA +G V+V+  +LS   + A  +  + +T LH+AVK    EVV
Sbjct: 223 NLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVV 282

Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS-HGANASGGLEVNATN 220
           + L+D         I+   DK  NTALH+AT K+  ++VELLLS    NA      N   
Sbjct: 283 KLLLD-----ADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNA------NTLT 331

Query: 221 HSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTE 280
               TALD+    P       I+E    +GA+R  +L            Q   D  I  E
Sbjct: 332 RDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLE 391

Query: 281 ANLRQPNDLMEYFK--FKKGRDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKP 338
              R   ++    K   K  R+      +++ VVAVL AT  F      PGG        
Sbjct: 392 QTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-------- 443

Query: 339 DRKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGF--SLSIEMIRI 385
                   G A   G++         F IF  FN++    SL++ +++I
Sbjct: 444 ----DNNDGSAVVVGRA--------SFKIFFIFNALALFTSLAVVVVQI 480

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VHK1|CSKI2_MOUSE Caskin-2 OS=Mus musculus GN=Caskin2 PE=1 SV=3

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 25/221 (11%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A+  G ++ V+ ++R         + DG  P+H+A+  G  +V   L++     C 
Sbjct: 85  PLHYAAWQGRLEPVRLLLRAS-AAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSNPC- 142

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAY-------GECAEDVSVQRETVLHLAVKNNQF 158
           L    +KTPL  A   GR+ V   +L+++       GE  +       T LHLA KN   
Sbjct: 143 LVNKLKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHR 202

Query: 159 EVVRALVDWIRDVKKENI-LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVN 217
           EV+R L+       K  I +N + K G TALH A    + +VV LLL       GG++VN
Sbjct: 203 EVIRQLL-------KAGIEINRQTKTG-TALHEAALYGKTEVVRLLLE------GGVDVN 248

Query: 218 ATNHSGLTALDVLLSFPSEAGDREIEEIFWSA-GAMRMRDL 257
             N    TALD++  F +    REI+++   A G +++R L
Sbjct: 249 IRNTYNQTALDIVNQFTTSQASREIKQLLREASGILKVRAL 289

Mus musculus (taxid: 10090)

>sp|Q8WXE0|CSKI2_HUMAN Caskin-2 OS=Homo sapiens GN=CASKIN2 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 25/221 (11%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A+  G ++ V+ ++R         + DG  P+H+A+  G  +V   L++     C 
Sbjct: 85  PLHYAAWQGRLEPVRLLLRAS-AAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSNPC- 142

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAY-------GECAEDVSVQRETVLHLAVKNNQF 158
           L    +KTPL  A   GR+ V   +L+++       GE  +       T LHLA KN   
Sbjct: 143 LVNKAKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHR 202

Query: 159 EVVRALVDWIRDVKKENI-LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVN 217
           EV+R L+       +  I +N + K G TALH A    + +VV LLL       GG++VN
Sbjct: 203 EVIRQLL-------RAGIEINRQTKTG-TALHEAALYGKTEVVRLLLE------GGVDVN 248

Query: 218 ATNHSGLTALDVLLSFPSEAGDREIEEIFWSA-GAMRMRDL 257
             N    TALD++  F +    REI+++   A G +++R L
Sbjct: 249 IRNTYNQTALDIVNQFTTSQASREIKQLLREASGILKVRAL 289

Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 151/353 (42%), Gaps = 48/353 (13%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           +  H+A+  G++  +  +I   P+ +   +    + +H A++ G  ++V  L+     L 
Sbjct: 93  DAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLA 152

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
            +     KT LH AA  G   +V +++         V  + +T LH+AVK    E+V  L
Sbjct: 153 AIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVL 212

Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVN--ATNHS 222
           ++        +++N  D +GNT LH+A  K   ++V+ +L +        EV+  A N S
Sbjct: 213 ME-----ADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKY-------CEVSRVAVNKS 260

Query: 223 GLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQT-SVDNCIST-- 279
           G TALD+      + G  EI  +    G    R  ++ P    EP G +  +   +S   
Sbjct: 261 GETALDI----AEKTGLHEIVPLLQKIGMQNAR--SIKPAEKVEPSGSSRKLKETVSEIG 314

Query: 280 -------EANLRQPNDLMEYFKFKKGRDSPG--ETLSALLVVAVLVATTTFQFGVNPPGG 330
                  E   R   ++    K      + G    +++  +VA+L+AT  F    N PG 
Sbjct: 315 HEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPG- 373

Query: 331 VWQEYYKPDRKN---GTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSI 380
                Y  D K+   G + G+A +A +          F IF+ F+S    +S+
Sbjct: 374 ----QYTDDPKDVPPGYSLGEARAAPRP--------EFLIFVVFDSFALFISL 414

Arabidopsis thaliana (taxid: 3702)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 19/214 (8%)

Query: 39  AFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
           A  +   PLH+A+  GHV+ V  ++  +   A  + + GF+P+H+A+  G++ V   L++
Sbjct: 499 ATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLLE 557

Query: 99  FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
            D    +  G    TPLH A     +D+V ++L   G      +    T LH+A K NQ 
Sbjct: 558 RDAH-PNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 615

Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
           EV R+L+ +      E++      QG T LHLA  +   ++V LLLS  AN + G     
Sbjct: 616 EVARSLLQYGGSANAESV------QGVTPLHLAAQEGHAEMVALLLSKQANGNLG----- 664

Query: 219 TNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
            N SGLT L ++    ++ G   + ++    G M
Sbjct: 665 -NKSGLTPLHLV----AQEGHVPVADVLIKHGVM 693

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 21/195 (10%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAK--EVNQDGFSPMHMASANGQIDVVRGLMK--FDQ 101
           PLH+A+  G VD V+ +I   P  ++  E N +  + +H A+  G  +VVR L++   D 
Sbjct: 94  PLHLAAWRGDVDIVQILIHHGPSHSRVNEQNLEKETALHCAAQYGHSEVVRVLLQELTDP 153

Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
            + + +G   +TPL  AA+ GR+ VV  +L+A+       + ++ T LHLA +N  +  V
Sbjct: 154 SMRNSRG---ETPLDLAALYGRLQVVRMLLTAHPNLM-SCNTRKHTPLHLAARNGHYATV 209

Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNH 221
           + L++   DV      N + ++G +ALH A    +  VV+LLL        G++ N  + 
Sbjct: 210 QVLLEADMDV------NTQTEKG-SALHEAALFGKMDVVQLLLD------SGIDANIRDC 256

Query: 222 SGLTALDVLLSFPSE 236
            G TALD+L   PS+
Sbjct: 257 QGRTALDILREHPSQ 271

Danio rerio (taxid: 7955)

>sp|Q6DD51|CSKI2_XENLA Caskin-2 OS=Xenopus laevis GN=caskin2 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 23/220 (10%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A+  G  + V+ ++R         + DG  P+H+A+  G  +V   L++     CH
Sbjct: 85  PLHYAAWQGQPEPVRLLLRASASV-NAASHDGQIPLHLAAQYGHYEVSETLLQHQSNPCH 143

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAY-------GECAEDVSVQRETVLHLAVKNNQF 158
           +    +KTPL  A   GRV VV  +L+++       G   +       T LHLA KN   
Sbjct: 144 VNK-GKKTPLDLACEFGRVKVVQLLLNSHLCVSLLEGTSKDPTDPNFTTPLHLAAKNGHL 202

Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
           EV+R L+    ++ K  +  M      TALH A    + +VV+LL+ +      G++VN 
Sbjct: 203 EVIRLLLKLGIEINK--VTKM-----GTALHEAALCGKTEVVKLLIEN------GVDVNI 249

Query: 219 TNHSGLTALDVLLSFPSEAGDREIEEIFWSA-GAMRMRDL 257
            N    TALD++  F +     +I+++   A G +++R L
Sbjct: 250 RNTYNQTALDIVNQFTTTHASIDIKQLLREASGILKVRAL 289

Xenopus laevis (taxid: 8355)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 32/192 (16%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQKL 103
           PLH A+  GH+  VK + +           DG +P+H+A+  G   V R L+    D  +
Sbjct: 575 PLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCSDVNI 634

Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
           C LQ    +TPLH AA  G     + +L   G   E ++ +  T LHLA +N     V+ 
Sbjct: 635 CSLQA---QTPLHVAAETGHTST-ARLLLHRGAGKEALTSEGYTALHLAAQNGHLATVKL 690

Query: 164 LVDWIRDVKKENILN--------------------------MKDKQGNTALHLATWKREC 197
           L++   DV     LN                          + D+QG +ALHLA   R  
Sbjct: 691 LIEEKADVMARGPLNQTALHLAAARGHSEVVEELVSADLIDLSDEQGLSALHLAAQGRHS 750

Query: 198 QVVELLLSHGAN 209
           Q VE LL HGA+
Sbjct: 751 QTVETLLKHGAH 762

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 15/192 (7%)

Query: 39  AFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
           A  +   PLH A+  GHVD    ++  +   A  + + GF+P+H+A+  G++ +   L++
Sbjct: 495 ATTAGHTPLHTAAREGHVDTALALLEKEASQAC-MTKKGFTPLHVAAKYGKVRLAELLLE 553

Query: 99  FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
            D    +  G    TPLH A     +D+V ++L   G      +    T LH+A K NQ 
Sbjct: 554 HDAH-PNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQI 611

Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
           EV R+L+ +      E++      QG T LHLA  +   ++V LLLS  AN + G     
Sbjct: 612 EVARSLLQYGGSANAESV------QGVTPLHLAAQEGHTEMVALLLSKQANGNLG----- 660

Query: 219 TNHSGLTALDVL 230
            N SGLT L ++
Sbjct: 661 -NKSGLTPLHLV 671

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
359490025	450	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.967	0.977	0.555	1e-143
224114660	448	predicted protein [Populus trichocarpa]	0.945	0.959	0.560	1e-140
147791225	394	hypothetical protein VITISV_030400 [Viti	0.841	0.972	0.502	1e-117
297737379	392	unnamed protein product [Vitis vinifera]	0.720	0.836	0.510	2e-94
387169570	435	hypothetical protein 34G24.15 [Capsella	0.841	0.880	0.437	3e-91
255539939	320	ankyrin repeat-containing protein, putat	0.668	0.95	0.544	3e-89
387169523	411	hypothetical protein 11M19.23, partial [	0.780	0.863	0.443	3e-89
15241393	442	ankyrin repeat-containing protein [Arabi	0.802	0.825	0.440	2e-87
224136414	459	predicted protein [Populus trichocarpa]	0.890	0.882	0.407	2e-80
359495749	460	PREDICTED: uncharacterized protein LOC10	0.887	0.878	0.393	1e-73

>gi|359490025|ref|XP_003634016.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/443 (55%), Positives = 325/443 (73%), Gaps = 3/443 (0%)

Query: 8   MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP 67
           MDRRL+ AA  G+V+ L QL  ENPLILHT A ASA NPLH++S  GHVDFVKE+IRLKP
Sbjct: 1   MDRRLLDAAQAGNVEDLHQLLRENPLILHTTALASAENPLHISSISGHVDFVKELIRLKP 60

Query: 68  DFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVV 127
           DF KE+NQDGFSP+HMA+ANG  +VV  L+KFD K CHL+G + KTPLH AA+KG+V+VV
Sbjct: 61  DFIKELNQDGFSPIHMAAANGHQEVVMELLKFDWKXCHLEGRDEKTPLHCAAMKGKVNVV 120

Query: 128 SEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
             +LSA  EC EDV+VQ+E  LHLAVKN+Q+E VR LV+ +R++++E++LNMKD+ GNT 
Sbjct: 121 RVILSACKECIEDVTVQKEIALHLAVKNSQYEAVRVLVEKVREMRREDVLNMKDEHGNTI 180

Query: 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFW 247
           LHLATW+++ Q   LL       SG  EVN  N+SGLTALDVLL FPSEAGDREI+EI  
Sbjct: 181 LHLATWRKQRQAKFLLGDATIPGSGVTEVNLMNNSGLTALDVLLIFPSEAGDREIKEILH 240

Query: 248 SAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLS 307
           SAGA R +D+   P  +        +++  + E    QPN+L+ YF+F +GRDSPGE  S
Sbjct: 241 SAGAKRAQDIAFPPFGT---QNHARLNSTTTVETCPMQPNNLVNYFRFHRGRDSPGEARS 297

Query: 308 ALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGI 367
           ALLV+AVLVAT T+Q G++PPGGVWQ+    ++ N T + KA+ AGQSI  S   + FGI
Sbjct: 298 ALLVIAVLVATATYQVGLSPPGGVWQDNSGTNQSNSTATNKAHFAGQSIFSSLGIISFGI 357

Query: 368 FIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTV 427
           F+ FNS+GFS+S+ MI ILT+ FP++ ELQ+C  AM+ TY  A+ITI+PD + +F+ +  
Sbjct: 358 FVLFNSIGFSVSLYMISILTSKFPMRFELQICLLAMFFTYNTAIITISPDNLKIFLIVLT 417

Query: 428 AIMPAVIALAAYLLRQHRKRHTE 450
           +I+P  + L A  +R++ K+ T+
Sbjct: 418 SILPLTVCLVAKWVREYVKKITK 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114660|ref|XP_002332335.1| predicted protein [Populus trichocarpa] gi|222832582|gb|EEE71059.1| predicted protein [Populus trichocarpa]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/435 (56%), Positives = 318/435 (73%), Gaps = 5/435 (1%)

Query: 8   MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP 67
           MD RL  AA TG++  LQQL  ENP IL+     SA NPL++A+A GHVDFVKEIIRLKP
Sbjct: 1   MDTRLFEAARTGNIDYLQQLLAENPFILNNTQL-SAENPLNIAAAMGHVDFVKEIIRLKP 59

Query: 68  DFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVV 127
            FA EVNQ+GFSPMH+A+ NGQ+++ + LM+ D KLC L+G ++ TP H AAI+GR +V+
Sbjct: 60  VFAIEVNQEGFSPMHIAADNGQVEIAKELMEVDIKLCRLEGRQKMTPFHHAAIRGRAEVI 119

Query: 128 SEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
           S MLS   +C ED + +RE+ LHLAV+NN+FE ++ LVDWIR++ KE +LNMKD+QGNT 
Sbjct: 120 SLMLSGCPDCIEDETERRESALHLAVRNNRFEAIKKLVDWIREMNKEYLLNMKDEQGNTV 179

Query: 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFW 247
           LHLA+WK++ +V+E+ L  G+ ++G LEVNA NH+G+TALDV+L FPSEAGDREI EI  
Sbjct: 180 LHLASWKKQRRVIEIFLGSGSASTGSLEVNAINHTGITALDVILLFPSEAGDREIVEILR 239

Query: 248 SAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLS 307
           SAGAMR RD     + S   + QTS DN  + E      ++L+EYFKFKK RDSP E   
Sbjct: 240 SAGAMRARD----SVPSTVTNSQTSTDNPSTPERCWSNRDNLVEYFKFKKDRDSPSEARG 295

Query: 308 ALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGI 367
            LLV+AVLVAT TFQ GV PPGGVWQ+   PD+KN T++  A+ AGQSI+ +T+ VGF +
Sbjct: 296 TLLVIAVLVATATFQVGVGPPGGVWQDTSIPDQKNITSNNTAHFAGQSIMATTNTVGFML 355

Query: 368 FIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTV 427
           F+FFNSVGFS+S+ M+ +LT+ FPLQ ELQ+C  AMY TY  A+  I P  + LFV LT 
Sbjct: 356 FVFFNSVGFSMSLYMLYVLTSKFPLQFELQICLLAMYCTYGTALSCIVPSNLYLFVQLTT 415

Query: 428 AIMPAVIALAAYLLR 442
            I+ + ++  A  +R
Sbjct: 416 TILSSTMSALARSVR 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791225|emb|CAN70132.1| hypothetical protein VITISV_030400 [Vitis vinifera]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/444 (50%), Positives = 285/444 (64%), Gaps = 61/444 (13%)

Query: 8   MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP 67
           MDRRL+ AA  G+V+ L QL  ENPLILHT A  SA NPLH++S  GHVDFVKE+IRLKP
Sbjct: 1   MDRRLLDAAQAGNVEDLHQLLRENPLILHTTALTSAENPLHISSISGHVDFVKELIRLKP 60

Query: 68  DFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVV 127
           DF KE+NQDGFSP+HMA+ANG  +VV  L+KFD KLCHL+G + KTPLH AA+KG+VDVV
Sbjct: 61  DFIKELNQDGFSPIHMAAANGHQEVVMELLKFDWKLCHLEGRDEKTPLHCAAMKGKVDVV 120

Query: 128 SEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
             +LSA  EC EDV+VQ+E  LHLAVKN+Q+E VR LV+ + +     I           
Sbjct: 121 RVILSACKECIEDVTVQKEXALHLAVKNSQYEAVRVLVEKMNEWXNAEI----------- 169

Query: 188 LHLATWKRECQVVELLLSHGA-NASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
               TW    QV+E LL       SG  EVN  N+SGLTALDVLL FPSEA         
Sbjct: 170 ----TW----QVIEFLLGDATIPGSGVTEVNLMNNSGLTALDVLLIFPSEA--------- 212

Query: 247 WSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETL 306
                                     V+ C        QPN+L+ YF+F +GRDSPGE  
Sbjct: 213 --------------------------VETCP------MQPNNLVNYFRFHRGRDSPGEAR 240

Query: 307 SALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFG 366
           SALLV+AVLVAT T+Q G++PPGGVWQ+    ++ N T + KA+ AGQSI  S   + FG
Sbjct: 241 SALLVIAVLVATATYQVGLSPPGGVWQDNSGTNQSNSTATNKAHFAGQSIFSSLGIISFG 300

Query: 367 IFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLT 426
           IF+ FNS+GFS+S+ MI ILT  FP++ ELQ+C  AM+ TY  A+ITI+PD + +F+ + 
Sbjct: 301 IFVLFNSIGFSVSLYMISILTXKFPMRFELQICLLAMFFTYNTAIITISPDNLKIFLIVL 360

Query: 427 VAIMPAVIALAAYLLRQHRKRHTE 450
            +I+P  + L A  +R++ K+ T+
Sbjct: 361 TSILPLTVCLVAKWVREYVKKITK 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737379|emb|CBI26580.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 169/331 (51%), Positives = 235/331 (70%), Gaps = 3/331 (0%)

Query: 120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNM 179
           +KG+V+VV  +LSA  EC EDV+VQ+E  LHLAVKN+Q+E VR LV+ +R++++E++LNM
Sbjct: 1   MKGKVNVVRVILSACKECIEDVTVQKEIALHLAVKNSQYEAVRVLVEKVREMRREDVLNM 60

Query: 180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGD 239
           KD+ GNT LHLATW+++ Q   LL       SG  EVN  N+SGLTALDVLL FPSEAGD
Sbjct: 61  KDEHGNTILHLATWRKQRQAKFLLGDATIPGSGVTEVNLMNNSGLTALDVLLIFPSEAGD 120

Query: 240 REIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGR 299
           REI+EI  SAGA R +D+   P  +        +++  + E    QPN+L+ YF+F +GR
Sbjct: 121 REIKEILHSAGAKRAQDIAFPPFGT---QNHARLNSTTTVETCPMQPNNLVNYFRFHRGR 177

Query: 300 DSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGS 359
           DSPGE  SALLV+AVLVAT T+Q G++PPGGVWQ+    ++ N T + KA+ AGQSI  S
Sbjct: 178 DSPGEARSALLVIAVLVATATYQVGLSPPGGVWQDNSGTNQSNSTATNKAHFAGQSIFSS 237

Query: 360 TDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGM 419
              + FGIF+ FNS+GFS+S+ MI ILT+ FP++ ELQ+C  AM+ TY  A+ITI+PD +
Sbjct: 238 LGIISFGIFVLFNSIGFSVSLYMISILTSKFPMRFELQICLLAMFFTYNTAIITISPDNL 297

Query: 420 SLFVTLTVAIMPAVIALAAYLLRQHRKRHTE 450
            +F+ +  +I+P  + L A  +R++ K+ T+
Sbjct: 298 KIFLIVLTSILPLTVCLVAKWVREYVKKITK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169570|gb|AFJ66229.1| hypothetical protein 34G24.15 [Capsella rubella]

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/395 (43%), Positives = 252/395 (63%), Gaps = 12/395 (3%)

Query: 45  NPLHVASAYGHVDFV--KEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102
           +PLH +      ++V   +I+R +  F  +++++GFSP+H A+A GQ++ V+ ++  D+K
Sbjct: 15  DPLHNSFNPRREEYVIGGKILRQRSGFVFDLDKEGFSPLHAAAAAGQVETVKAILGIDKK 74

Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
            C L+G + KTPLH A ++G++DV+ E++S   +C ED +VQ +T LHLAV + +   V 
Sbjct: 75  FCRLKGKDGKTPLHLATMRGKIDVIRELVSNCVDCVEDETVQGQTALHLAVLHQETGAVM 134

Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
           A+VD I +  + ++L  KD+QGNTALHLATWK+  QV+E+L+      S   EVNA N  
Sbjct: 135 AIVDLITEKNRIDLLYKKDEQGNTALHLATWKKNRQVMEVLVQAIPEESRSFEVNAMNKM 194

Query: 223 GLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEAN 282
           GL+ALD+L+ FPSEAGDREI E    AGA R RD+  + +        TS   C  T   
Sbjct: 195 GLSALDLLVMFPSEAGDREIYEKLIEAGAQRGRDVGTTNVERT-----TSTSTCQETTME 249

Query: 283 LRQPNDLMEYFKFKKGRDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKN 342
                +L++YF FKK RDSP E  SALLVVA LVAT TFQ  + PPGG WQ+   P    
Sbjct: 250 CGSHKELVKYFTFKKHRDSPSEARSALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQ 309

Query: 343 GTTSG-----KAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQ 397
             TS      +A+ AGQSI+G+ + + F +F+FFN++GFS+S+ M+ ILT  FPL+ +LQ
Sbjct: 310 NKTSANATIQQAHIAGQSIMGTFNGIAFTMFVFFNTIGFSVSLSMLNILTLGFPLRFQLQ 369

Query: 398 LCFFAMYVTYTNAVITIAPDGMSLFVTLTVAIMPA 432
           +C  AMY ++  A+ +IAPD + L+  L  +I+ A
Sbjct: 370 ICMMAMYFSHNTAMTSIAPDQVKLYCILITSILAA 404

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539939|ref|XP_002511034.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223550149|gb|EEF51636.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/314 (54%), Positives = 221/314 (70%), Gaps = 10/314 (3%)

Query: 8   MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP 67
           MD RL+ AA +G++  L QL  ENPLIL + A  S+ NPLH+AS  GHVDFVK+++RLKP
Sbjct: 1   MDARLLEAAQSGNIVYLHQLLAENPLILLSTALFSSENPLHIASIAGHVDFVKDLLRLKP 60

Query: 68  DFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVV 127
           +FA+E+NQDG+SPMHMA+  G +++VR L K D +LC ++G ++KTPLH AAIKGR +V 
Sbjct: 61  EFAQELNQDGYSPMHMAATIGHVEIVRELAKVDSRLCRVRGKQKKTPLHLAAIKGRAEVT 120

Query: 128 SEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
           S ML +  +C EDV+V+ ET +H AVKNNQF  V  LVDWIR   +E +LN+KD+ GNT 
Sbjct: 121 SVMLMSCPDCIEDVTVRGETAVHQAVKNNQFHAVNVLVDWIRGTNREEMLNVKDELGNTV 180

Query: 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFW 247
           LHLA WK++ Q  +LLL      SG LEVNA N+SGLT LD+LL FPSEAGD E+ EI  
Sbjct: 181 LHLAAWKKQRQ-AKLLLGAATIRSGILEVNAKNNSGLTCLDLLLIFPSEAGDAEVIEILR 239

Query: 248 SAGAMRMRDLTLSPIRSPEPHGQ------TSVDNCISTEANLRQ---PNDLMEYFKFKKG 298
            AGA++ +D++ SPI S +   Q      T +    ST +   Q   PN+L+ YFKFKKG
Sbjct: 240 GAGALQAKDISHSPISSFQYVNQITASTSTQITPSTSTASETCQTPHPNNLVNYFKFKKG 299

Query: 299 RDSPGETLSALLVV 312
           RDSP E  SALLV+
Sbjct: 300 RDSPSEARSALLVM 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387169523|gb|AFJ66184.1| hypothetical protein 11M19.23, partial [Arabidopsis halleri]

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/365 (44%), Positives = 239/365 (65%), Gaps = 10/365 (2%)

Query: 73  VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS 132
           +++DGFSP+H A+A GQ++ VR  +  ++KLC L+  + KTPLH A ++G++DV+ E+++
Sbjct: 12  LDKDGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIVA 71

Query: 133 AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT 192
           +  +C ED +VQ +T LHLAV + + E V A+++ I +  + ++LN KD+QGNTALH+AT
Sbjct: 72  SCVDCVEDETVQGQTALHLAVLHQEIEAVIAILELITETNRLDVLNKKDEQGNTALHIAT 131

Query: 193 WKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
           W++  QV+E+L+      S   EVNA N  GL+A+D+L+ FPSEAGDREI E    AGA 
Sbjct: 132 WRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIYEKLIEAGAQ 191

Query: 253 RMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLSALLVV 312
           R RD+  + +        TS   C       +   +L++YF FKK RDSP E  SALLVV
Sbjct: 192 RGRDIGTTNVER-----NTSTSTCQERAMESQSHKELVKYFTFKKHRDSPSEARSALLVV 246

Query: 313 AVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTS-----GKAYSAGQSILGSTDPVGFGI 367
           A LVAT TFQ  + PPGG WQ+   P     TTS      +A+ AGQSI+G+ + V F +
Sbjct: 247 ASLVATATFQASLTPPGGTWQDSSIPTVSQNTTSVNTTNQQAHIAGQSIMGTFNGVAFTL 306

Query: 368 FIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTLTV 427
           F+FFN++GFS+S+ M+ ILT  FPL+ +LQ+C  AMY ++   + +IAPD + ++  L  
Sbjct: 307 FVFFNTIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMASIAPDNVKIYCILIT 366

Query: 428 AIMPA 432
           +I+ A
Sbjct: 367 SILAA 371

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241393|ref|NP_199929.1| ankyrin repeat-containing protein [Arabidopsis thaliana] gi|8843852|dbj|BAA97378.1| unnamed protein product [Arabidopsis thaliana] gi|45825143|gb|AAS77479.1| At5g51160 [Arabidopsis thaliana] gi|51968476|dbj|BAD42930.1| putative protein [Arabidopsis thaliana] gi|62319991|dbj|BAD94109.1| putative protein [Arabidopsis thaliana] gi|332008662|gb|AED96045.1| ankyrin repeat-containing protein [Arabidopsis thaliana]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/377 (44%), Positives = 247/377 (65%), Gaps = 12/377 (3%)

Query: 61  EIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI 120
           +I+R +  F  +++++GFSP+H A+A GQ++ VR  +  ++KLC L+  + KTPLH A +
Sbjct: 33  KILRQRSVF--DLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATM 90

Query: 121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMK 180
           +G++DV+ E++++  +C ED +VQ +T LHLAV + + E V A+V+ I +  + ++LN K
Sbjct: 91  RGKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKK 150

Query: 181 DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDR 240
           D+QGNTALHLATW++  QV+E+L+      S   EVNA N  GL+A+D+L+ FPSEAGDR
Sbjct: 151 DEQGNTALHLATWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDR 210

Query: 241 EIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRD 300
           EI E    AGA R RD+  + +        TS   C       +   +L++YF FKK RD
Sbjct: 211 EIYEKLIEAGAQRGRDIGTTNVER-----TTSTSTCQERTMKSQSHKELVKYFTFKKHRD 265

Query: 301 SPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKP-----DRKNGTTSGKAYSAGQS 355
           SP E  SALLVVA LVAT TFQ  + PPGG WQ+   P          TT+ +A++AGQS
Sbjct: 266 SPSEARSALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQNTTNVNTTNQQAHTAGQS 325

Query: 356 ILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIA 415
           I+G+ + V F +F+FFN++GFS+S+ M+ ILT  FPL+ +LQ+C  AMY ++   + +IA
Sbjct: 326 IMGTFNGVAFTLFVFFNTIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMASIA 385

Query: 416 PDGMSLFVTLTVAIMPA 432
           PD + L+  L  +I+ A
Sbjct: 386 PDHVKLYCILITSILAA 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136414|ref|XP_002326854.1| predicted protein [Populus trichocarpa] gi|222835169|gb|EEE73604.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/412 (40%), Positives = 253/412 (61%), Gaps = 7/412 (1%)

Query: 8   MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP 67
           MD RL  A L+GD+   + L  E+PLIL   +  S  NPLH++S  GH++  +E+   KP
Sbjct: 1   MDSRLSDAILSGDIAAFRSLLAEDPLILDRISLNSTENPLHLSSLAGHLEITREVACQKP 60

Query: 68  DFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVV 127
            FA+E+NQDGFSP+H+AS+NG +++VR L++    +C L+G + KTPLH AA+KGRVD+V
Sbjct: 61  AFARELNQDGFSPVHIASSNGHVELVRELLRVGYDICLLKGKDGKTPLHLAAMKGRVDIV 120

Query: 128 SEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
            E++ A  +  ++V++  ETVLH+AVK+NQ E V+ L++ I+ +    I+N KDK GNT 
Sbjct: 121 KELVCACPQSVKEVTICGETVLHVAVKSNQAEAVKVLLEEIKKLDMMEIVNWKDKDGNTI 180

Query: 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL---LSFPSEAGDREIEE 244
           +HLAT +++ + + LL+   A A  G+EVN+ N SG TA DVL   L    E  D  I E
Sbjct: 181 MHLATLRKQHETIRLLIGREAIAY-GVEVNSINASGFTAKDVLDFILQSGGEYNDISILE 239

Query: 245 IFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGE 304
           +F  AGAM+  D+T +P  + +   +    N   T  N   P +L +  K +   +S  E
Sbjct: 240 MFQQAGAMKAMDITTNPASTFQVEVKNINKNVNHTSQN-SCPWNLWKELKLEI-EESSTE 297

Query: 305 TLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVG 364
           T +AL+VVA L+AT T+Q  ++PP G W    +  +   +   +    G++++ + DP  
Sbjct: 298 TQNALMVVATLIATVTYQATLSPPSGFWSAESRRSQTINSVQKRDILPGEAVM-TGDPEV 356

Query: 365 FGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAP 416
           F +F  FN+VGF  SI MI +LT+ FPL+  L+L   +M  TY  AVI ++P
Sbjct: 357 FAVFTVFNAVGFFASIAMISLLTSGFPLRAGLRLAILSMTATYVIAVIYMSP 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495749|ref|XP_003635081.1| PREDICTED: uncharacterized protein LOC100852638 [Vitis vinifera]

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 179/455 (39%), Positives = 253/455 (55%), Gaps = 51/455 (11%)

Query: 8   MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP 67
           MD  +  AA  G+V  L  L   +PLIL     ASA  PLHVA+ +GH+DFVKE+I+ K 
Sbjct: 1   MDPIMFKAARDGNVADLLNLLEGDPLILERLVTASADTPLHVAAMFGHLDFVKEVIKHKS 60

Query: 68  ---DFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV 124
              ++ KE+NQ G+SP+H+A+A+G +DVVR L++   +LC L+G +  TPLH A++KGR 
Sbjct: 61  NVVEYVKELNQQGYSPIHLAAAHGHVDVVRMLIEISSELCCLKGRDGMTPLHCASVKGRA 120

Query: 125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG 184
           + +S ++SA   C  +V+ + ET LH+A +NNQ + +R LV+W+R  K   ++N KD  G
Sbjct: 121 ETMSLLISASPLCVIEVTERGETALHVAARNNQLDALRVLVEWLRRTKALVVINSKDGDG 180

Query: 185 NTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG--DREI 242
           NT LHLA  ++  Q +ELLLS    A   LEVNA N  GLTA D+L+  P E+G    E 
Sbjct: 181 NTVLHLAAARKNHQAIELLLSCSDGAPEVLEVNAINKRGLTAFDLLMLCPCESGIVHAEA 240

Query: 243 EEIFWSAGAMRMRDLTLSPIRS-PEPH--------------GQTSVDNCISTEANLRQPN 287
           E +F   GA   RD  L  I S P P+              G T++    ST +  RQ  
Sbjct: 241 ERLFRGIGA--ARDGVLDDINSTPRPYHNHNPVSYQQNTLAGHTNIVAAPSTSS--RQAT 296

Query: 288 DLME-------YFKFKKGRDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDR 340
            L +       YFKF+  RD+P     ALLVVAVL+A  T+Q G + P  V Q       
Sbjct: 297 MLGDDWVTWRNYFKFQFDRDTPSNVREALLVVAVLIAAATYQTGQSIPTWVQQ------- 349

Query: 341 KNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCF 400
                  K     + I  S + V F  +   N+VGF +S++MI +LT+ FP+  EL +  
Sbjct: 350 -------KGSDKFEMIRASHNLVLFLFYSLSNTVGFLVSLDMILVLTSKFPMCWELVVAV 402

Query: 401 FAMYVTYTNAVITIAPDG------MSLFVTLTVAI 429
            AM + Y+ +++ IAP G        L +TL +AI
Sbjct: 403 HAMAINYSISIVGIAPSGGMKIASAVLCITLLLAI 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	455
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.802	0.825	0.411	2.4e-76
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.556	0.568	0.361	2e-41
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.520	0.518	0.347	1.1e-38
TAIR|locus:2012532	441	AT1G14480 "AT1G14480" [Arabido	0.670	0.691	0.324	4.3e-38
TAIR|locus:2012557	436	AT1G14500 "AT1G14500" [Arabido	0.538	0.561	0.359	7.3e-38
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.520	0.556	0.365	1.7e-36
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.479	0.505	0.363	6.3e-35
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.567	0.411	0.294	6.6e-20
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.441	0.377	0.317	9.3e-20
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.916	0.629	0.252	9.7e-20

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 155/377 (41%), Positives = 237/377 (62%)

Query:    61 EIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI 120
             +I+R +  F  +++++GFSP+H A+A GQ++ VR  +  ++KLC L+  + KTPLH A +
Sbjct:    33 KILRQRSVF--DLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATM 90

Query:   121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMK 180
             +G++DV+ E++++  +C ED +VQ +T LHLAV + + E V A+V+ I +  + ++LN K
Sbjct:    91 RGKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKK 150

Query:   181 DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDR 240
             D+QGNTALHLATW++  QV+E+L+      S   EVNA N  GL+A+D+L+ FPSEAGDR
Sbjct:   151 DEQGNTALHLATWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDR 210

Query:   241 EIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRD 300
             EI E    AGA R RD+  + +        TS   C       +   +L++YF FKK RD
Sbjct:   211 EIYEKLIEAGAQRGRDIGTTNVERT-----TSTSTCQERTMKSQSHKELVKYFTFKKHRD 265

Query:   301 SPGEXXXXXXXXXXXXXXXXFQFGVNPPGGVWQEYYKP----DRKN-GTTSGKAYSAGQS 355
             SP E                FQ  + PPGG WQ+   P    +  N  TT+ +A++AGQS
Sbjct:   266 SPSEARSALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQNTTNVNTTNQQAHTAGQS 325

Query:   356 ILGSTDPVGFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIA 415
             I+G+ + V F +F+FFN++GFS+S+ M+ ILT  FPL+ +LQ+C  AMY ++   + +IA
Sbjct:   326 IMGTFNGVAFTLFVFFNTIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMASIA 385

Query:   416 PDGMSLFVTLTVAIMPA 432
             PD + L+  L  +I+ A
Sbjct:   386 PDHVKLYCILITSILAA 402

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 98/271 (36%), Positives = 148/271 (54%)

Query:     8 MDRRLIAAALTGDVQTLQQLFVENPLILHT-PAFASAGNPLHVASAYGHVDFVKEIIRLK 66
             MD RLI A   G +  L     ENP IL    A      PLH+ASA G++ F  E++ LK
Sbjct:     1 MDPRLIVATQIGSIDELYAHIHENPYILEIIDAIPFINTPLHIASASGNLSFAMELMNLK 60

Query:    67 PDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
             P FA+++N  G SP+H+A   GQ  +V  L+K D  L  L+G E  TP H    +G  D+
Sbjct:    61 PSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRRGETDL 120

Query:   127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKK---ENI----LNM 179
             ++E L A   C +D +V  ET LH+AV N+++E +  L+ W++ +++   E++    LN 
Sbjct:   121 MTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEMQFLNK 180

Query:   180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGD 239
             +D+ GNTALH+A ++   + V++L+   A     +  N  N +GLTALD+L +      +
Sbjct:   181 RDQDGNTALHIAAYQNRFKAVKILVKCSA-----VNRNIHNRTGLTALDILHNQRDHHAN 235

Query:   240 REIEEIF--WS--AGAMRMRDLTLSPI-RSP 265
               IE I   W   +G    +   +S I RSP
Sbjct:   236 SNIENIIRKWGGKSGNSLPKSKKVSEILRSP 266

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 90/259 (34%), Positives = 140/259 (54%)

Query:     8 MDRR-LIAAALTGDVQTLQQLFVENPLILH-TPAFASAGNPLHVASAYGHVDFVKEIIRL 65
             MD+R L AAA +G++  L +L  E+P +L  T        PLHVA+  G  +F  E++ L
Sbjct:     1 MDQRSLEAAAKSGNIDLLYELIHEDPYVLDKTDHVPFVNTPLHVAAVNGKTEFAMEMMNL 60

Query:    66 KPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVD 125
             KP FA+++N DG +P+H+A  +G   +V  ++K D  L  ++G    TPL  A  + ++D
Sbjct:    61 KPSFARKLNADGLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMTPLLVAVSRKKID 120

Query:   126 VVSEMLSAYGECAEDVSVQRETVLHLAVKN-NQFE---VVRALVDWI-----RDVK--KE 174
             ++SE      E   D +V  E  LH+AV N +Q E   V++ L+ WI     +D +  + 
Sbjct:   121 LMSEFFLGCPESIVDANVNGENALHIAVNNYDQREGLSVLKVLMGWILRLCQKDAEWIET 180

Query:   175 NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234
              ++N +DK GNT LHLA ++   Q ++LLL      S  + VN  N +GLT  D+ +   
Sbjct:   181 RVINRRDKDGNTPLHLAAYEINRQAMKLLLE-----SSKINVNIENKNGLTVFDIAVLH- 234

Query:   235 SEAGDREIEEIFWSAGAMR 253
                 +REIE +    G  R
Sbjct:   235 ---NNREIERMVKRHGGKR 250

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012532 AT1G14480 "AT1G14480" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 110/339 (32%), Positives = 169/339 (49%)

Query:     8 MDRRLIAAALTGDVQTLQQLFVENPLILHT-PAFASAGNPLHVASAYGHVDFVKEIIRLK 66
             MD RL  AA +G +  L  L  ENP IL    A      PLHVA+ +G+++F  E++ LK
Sbjct:     1 MDLRLQQAAESGSINELYALIDENPYILENIDAVPFVSTPLHVAAVFGNIEFAMEMLNLK 60

Query:    67 PDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
             P FA+++N  G+SP+H+A    Q D V  ++  D  L  ++G    TP H   I+G  D+
Sbjct:    61 PSFARKLNTSGYSPLHLAVEKEQSDFVSHMLWHDGGLSRVKGRNGVTPFHLLVIRGDDDL 120

Query:   127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKK------EN-ILNM 179
             V+E L    EC EDV+V R+  LHLAV N++FEV++ L  WI+ + +      EN +LN 
Sbjct:   121 VAECLITSPECIEDVNVDRQNALHLAVMNDRFEVLQVLTGWIQRMSQKDAYYIENRVLNK 180

Query:   180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG- 238
             +D   NTALHLA +K + Q ++LLL         +E N  N   LT +D+L +    AG 
Sbjct:   181 RDFDFNTALHLAAYKNDQQALKLLLKCRL-----VEPNLVNIDDLTFVDILRTQGENAGG 235

Query:   239 -DREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFK--F 295
              + ++E+     G +    +       P+   ++ +         L+ P + M Y+    
Sbjct:   236 GNLDLEQAVIKTGCVEAASM-------PKFKEESDL---------LKSPINFMTYYSTSM 279

Query:   296 KKGRDSPGEXXXXXXXXX-XXXXXXXFQFGVNPPGGVWQ 333
             K+ + S  +                 +Q  + PPGGV Q
Sbjct:   280 KRMKSSTSDQDRGAFLIVCTLIITATYQMALQPPGGVHQ 318

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012557 AT1G14500 "AT1G14500" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 93/259 (35%), Positives = 140/259 (54%)

Query:     8 MDRRLIAAALTGDVQTLQQLFVENPLIL-HTPAFASAGNPLHVASAYGHVDFVKEIIRLK 66
             MD RL  AA TG +     L  ENP IL +  A      PLHVA+A  ++ F  E++ LK
Sbjct:     1 MDPRLQHAAETGSINDFYALIEENPYILDNINAVPFVNTPLHVAAASDNIPFAMEMLNLK 60

Query:    67 PDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
             P FA+++N  G+SP+H+A      + +  L+  D  L  ++G E  TP H  AI+G V++
Sbjct:    61 PSFARKLNTSGYSPLHLAVEKDHREFITWLLWRDPGLVRVKGREGITPFHLLAIRGDVNL 120

Query:   127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKEN-------ILNM 179
             V+E L     C +DVSV     LHLAV N++FE+++ L  W++ + +++        LN 
Sbjct:   121 VAECLKYCPVCIQDVSVNGHNALHLAVMNDRFEILQVLTGWLQRMSQKDSASTESDFLNR 180

Query:   180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSF-PSEAG 238
             KD   NT LHLA +K + Q V+LLL         +++N  N  GLT LD+L +   S   
Sbjct:   181 KDLAHNTPLHLAAYKEDHQAVKLLLQCQL-----VKLNEVNADGLTFLDILRNNGQSRDL 235

Query:   239 DREIEEIFWSAGAMRMRDL 257
             D+++E++    G      L
Sbjct:   236 DKDLEQVVVKTGCKEAASL 254

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 91/249 (36%), Positives = 142/249 (57%)

Query:     8 MDRRLIAAALTGDVQTLQQLFVENPLILH-TPAFASAGNPLHVASAYGHVDFVKEIIRLK 66
             MD +L+    +G V  L  L    P IL           PLH AS+ G +D   E++ LK
Sbjct:     1 MDSKLLLVTQSGSVDDLYSLIQAAPDILQKVDVLPIIHTPLHEASSAGKLDLAMELMILK 60

Query:    67 PDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
             P FAK++N+ G SP+H+A  N Q+++   L+K D  L  ++G    TPLH  A KG VD+
Sbjct:    61 PSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKGDVDL 120

Query:   127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKEN-----ILNMKD 181
             +++ L A  E  +DV+V  ET+LH+ + N+++E ++ L  W++ ++  +     +LN +D
Sbjct:   121 LTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRD 180

Query:   182 KQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDRE 241
             + GNT LHLA ++   +VV+ L+         L+ N  N SG+TALDVL +  S   ++E
Sbjct:   181 RGGNTVLHLAAYENNDKVVKQLVK-----CLSLDRNIQNKSGMTALDVLRARGSHM-NKE 234

Query:   242 IEEIFWSAG 250
             IEEI   +G
Sbjct:   235 IEEIIQMSG 243

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 84/231 (36%), Positives = 125/231 (54%)

Query:     8 MDRRLIAAALTGDVQTLQQLFVENPLILHT-PAFASAGNPLHVASAYGHVDFVKEIIRLK 66
             MDRRL+    +G+V  L  L  ++P IL           PLH AS+ G  D   E++ LK
Sbjct:     1 MDRRLLWVTDSGNVDALYALIHKDPYILQNIDVLPFVHTPLHEASSTGKTDLAMELMVLK 60

Query:    67 PDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
             P FAK++N DG SP+H+A  N Q+ +   L+K +  L  + G +  TPLH    KG  ++
Sbjct:    61 PTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDANL 120

Query:   127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKEN-------ILNM 179
             ++E L A  E  +D +V  ET LH+AV N+++E ++ L  WI  + K +       +LN 
Sbjct:   121 LTEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTEIHVLNK 180

Query:   180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL 230
             +D+ GNT LHLA +K   +  + LL         L  +  N  G+TALD+L
Sbjct:   181 RDRDGNTILHLAAYKNNHKAFKELLK-----CISLNRDIQNKGGMTALDIL 226

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 6.6e-20, P = 6.6e-20
 Identities = 81/275 (29%), Positives = 131/275 (47%)

Query:    12 LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
             L +AA  G    ++++     L   +    +  +P HVA+  GH++ +K+++   P+ A 
Sbjct:   157 LYSAAENGHSLVVEEMLKHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAM 216

Query:    72 EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEML 131
              V+    + +H A++ G  DVV  L+K D  L  +     KT LH AA  G  +VV  ++
Sbjct:   217 TVDLSCTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLI 276

Query:   132 SAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
                         + +T LH+AVK     +V  LV          IL+++D +GNT LH A
Sbjct:   277 GNDASIGFRTDKKGQTALHMAVKGQNEGIVLELVK-----PDPAILSVEDSKGNTPLHTA 331

Query:   192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
             T K   ++V  L+S       G+ +NA N +G TALD+      + G+ E+  +   AGA
Sbjct:   332 TNKGRIKIVRCLVSFD-----GINLNAMNKAGDTALDIA----EKIGNPELVSVLKEAGA 382

Query:   252 MRMRDLTLSPIRSPEPH-GQTSVDNCISTEANLRQ 285
                +DL   P R+P     QT  D     ++ L+Q
Sbjct:   383 ATAKDLG-KP-RNPAKQLNQTVSDIKHEVQSQLQQ 415

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
 Identities = 67/211 (31%), Positives = 102/211 (48%)

Query:    45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
             N  HVA+  GH+  VKE++RL P+  +  +    SP++ A+    +++V  ++  D    
Sbjct:    96 NAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCA 155

Query:   105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
              +     KT LH A   G + +V  ++            + +T LH+AVK    EVV  +
Sbjct:   156 MIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEI 215

Query:   165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL 224
             +    D     ILN +D++GNTALH+AT K   Q+  LLL+  A     +EVNA N+   
Sbjct:   216 LQ--ADY---TILNERDRKGNTALHIATRKARPQITSLLLTFTA-----IEVNAINNQKE 265

Query:   225 TALDVLLSFPSEAGDREIEEIFWSAGAMRMR 255
             TA+D+           EI E    AGA   R
Sbjct:   266 TAMDLADKLQYSESALEINEALVEAGAKHGR 296

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 9.7e-20, P = 9.7e-20
 Identities = 115/455 (25%), Positives = 185/455 (40%)

Query:    12 LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
             L  AA  G    ++++     L   + A  +  +P HVA+  GH++ +K ++   P+ A 
Sbjct:   193 LYTAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLAM 252

Query:    72 EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEML 131
               +    + +H A+  G IDVV  L++ D  L  +     KT LH AA  G V+VV  ++
Sbjct:   253 TTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKSLI 312

Query:   132 SAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
                         + +T LH+AVK     +V  LV    DV    +L+++D +GNT LH+A
Sbjct:   313 GKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVK--PDVA---VLSVEDNKGNTPLHIA 367

Query:   192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
             T K   ++V  L+S       G+ +N  N +G T LDV      + G+ E+  +   AGA
Sbjct:   368 TNKGRIKIVRCLVSFE-----GINLNPINKAGDTPLDV----SEKIGNAELVSVLKEAGA 418

Query:   252 MRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQPND----LMEYFKFKKGRDSPGEXXX 307
                +DL   P    +   QT  D     ++ L+Q       + +  K  K     G    
Sbjct:   419 ATAKDLG-KPQNPAKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNA 477

Query:   308 XXXXXXXXXXXXXFQFGV--NPPGGVWQEYYKPDRKNGTTSGKAYSAGQS---ILGSTDP 362
                            F      PG      Y+ DR  G   G+A+ A ++   +    D 
Sbjct:   478 INSATVVAVLIATVAFAAIFTIPG-----QYEEDRSKGELLGQAHIANKAPFLVFFIFDS 532

Query:   363 VGFGIFIFFNSVGFSLSIEMIRILTTN---FPL-QLELQLCFFAMYVTYTNAVITIAPDG 418
             +   +FI    V    S+ +I         F + +L    C F      + + I +  + 
Sbjct:   533 LA--LFISLAVVVVQTSVVVIEQKAKKKLVFVINKLMWCACLFISIAFVSLSYIVVGKEE 590

Query:   419 MSLFVTLTV---AIMPAVIALAAYLLRQHRKRHTE 450
             M L V  TV    IM   I    Y +  HR   ++
Sbjct:   591 MWLAVCATVIGGTIMLTTIGAMCYCVVMHRMEESK 625

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02320016 hypothetical protein (448 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	455
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-18
pfam13962	114	pfam13962, PGG, Domain of unknown function	9e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.6 bits (246), Expect = 8e-25
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 8/133 (6%)

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEML 131
             ++DG +P+H+A++NG ++VV+ L++    + + +  + +TPLH AA  G +++V ++L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIV-KLL 59

Query: 132 SAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
              G           T LHLA +N   +VV+ L+    DV      N +DK G T LHLA
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV------NARDKDGRTPLHLA 113

Query: 192 TWKRECQVVELLL 204
                 +VV+LLL
Sbjct: 114 AKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 93.6 bits (233), Expect = 5e-23
 Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 13/120 (10%)

Query: 110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIR 169
           + +TPLH AA  G ++VV  +L   G           T LHLA KN   E+V+ L++   
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 170 DVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
           DV      N +DK GNT LHLA       VV+LLL HGA+      VNA +  G T L +
Sbjct: 65  DV------NARDKDGNTPLHLAARNGNLDVVKLLLKHGAD------VNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.8 bits (218), Expect = 6e-21
 Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
            PLH+A++ GH++ VK ++    D     + DG +P+H+A+ NG +++V+ L++    + 
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV- 66

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
           + +  +  TPLH AA  G +DVV ++L  +G           T LHLA KN   EVV+ L
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVV-KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 165 V 165
           +
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKE 174
           LH AA  G +++V  +L      A+      +T LHLA +N   E+V+ L++        
Sbjct: 1   LHLAAKNGNLELVKLLLEK---GADVNLGDTDTALHLAARNGNLEIVKLLLE------HG 51

Query: 175 NILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
             +N KDK GNTALHLA      ++V+LLL HGA+
Sbjct: 52  ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 69.8 bits (172), Expect = 9e-15
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 13/103 (12%)

Query: 304 ETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPV 363
           +T ++LLVVA L+AT TF  G  PPGG WQ+               + AG  IL +  P 
Sbjct: 6   KTRNSLLVVATLIATVTFAAGFTPPGGYWQD------------DGGHHAGTPIL-AGKPR 52

Query: 364 GFGIFIFFNSVGFSLSIEMIRILTTNFPLQLELQLCFFAMYVT 406
            F  F   N++ F  S+  + +L    P          A+   
Sbjct: 53  RFKAFFVSNTIAFVASLVAVILLLYIVPSFSRRLPRLLALLTL 95

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 64.2 bits (157), Expect = 5e-13
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           LH+A+  G+++ VK ++    D       D  + +H+A+ NG +++V+ L++    +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVN---LGDTDTALHLAARNGNLEIVKLLLEHGADVNA- 56

Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAY 134
           +  +  T LH AA  G +++V  +L   
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.9 bits (165), Expect = 6e-13
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQ-----IDVVRGLMK 98
             PLH A++ G    VK ++    D     + DG +P+H+A+ NG      I+V + L++
Sbjct: 74  RLPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 99  FDQKLC--HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN 156
               L   +L+  +  TPLH+AA+ G  D+V  +L A  +     +    T L  A KN 
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNG 191

Query: 157 QFEVVRALVD---------WIRDVKKENILNMKDKQGNTALHLA 191
           + E+V+ L+D         +  +      ++ ++    T+L +A
Sbjct: 192 RIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 82  HMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV 141
           H+A+ NG +++V+ L++   K   +   +  T LH AA  G +++V  +L  +G      
Sbjct: 2   HLAAKNGNLELVKLLLE---KGADVNLGDTDTALHLAARNGNLEIVKLLLE-HGADVNAK 57

Query: 142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKEN 175
                T LHLA +N   E+V+ L++   D+  ++
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 52/227 (22%), Positives = 88/227 (38%), Gaps = 49/227 (21%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH-----MASANGQIDVVRGLMKF- 99
           PL++A    ++D VK ++    D       +  +P+H       +     ++V+ L+++ 
Sbjct: 38  PLYLAKEARNIDVVKILLDNGADINSSTKNN-STPLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 100 ------DQKLCHLQGPERKTPLHFAAIK--GRVDVVSEMLSAYGECAEDVSVQRETVLHL 151
                 D             PL +A  K      +V E L   G      +   E +LHL
Sbjct: 97  ANVNAPDNNGIT--------PLLYAISKKSNSYSIV-EYLLDNGANVNIKNSDGENLLHL 147

Query: 152 AVKNNQ--FEVVRALVDWIRDVKKENILNM----------KDKQGNTALHLATWKRECQV 199
            +++N+   ++++ L+D   D+  +N +N           KD  G T LH A +    + 
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 207

Query: 200 VELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           V+ LL  GAN       N  N  G T L         A     +EIF
Sbjct: 208 VKYLLDLGAN------PNLVNKYGDTPL-------HIAILNNNKEIF 241

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 59.5 bits (143), Expect = 4e-10
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 15/129 (11%)

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF-----E 159
             +  + + PLH AA KG   +V  +L++  +         +T LHLA  N        E
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIE 125

Query: 160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNAT 219
           V + L++        ++ N++D+ GNT LH A    +  +VELLL  GA+       N+ 
Sbjct: 126 VAKLLLEA---GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD------PNSR 176

Query: 220 NHSGLTALD 228
           N  G+TALD
Sbjct: 177 NSYGVTALD 185

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
           L  AA  G+++ ++ L  +   +            LH+A+  G+++ VK ++    D   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVN----LGDTDTALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
             ++DG + +H+A+ NG +++V+ L++    + 
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 19/177 (10%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
           DG SP+ +A      + ++ LMK    +  ++ P+ ++ LH A  +G V  V E L   G
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHG-AIPDVKYPDIESELHDAVEEGDVKAV-EELLDLG 91

Query: 136 ECAEDVSVQR-ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK 194
           + A+DV  +   T LHLA    + ++++ L+    D    N     DK   + LHLA   
Sbjct: 92  KFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN----TDK--FSPLHLAVMM 145

Query: 195 RECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            + + +ELL+ H A       ++  +  G T L + ++     GD  I ++   +GA
Sbjct: 146 GDIKGIELLIDHKAC------LDIEDCCGCTPLIIAMAK----GDIAICKMLLDSGA 192

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 20/157 (12%)

Query: 83  MASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHF---AAIKGRVDVVSEMLSAYGECAE 139
           + ++N  ++ VR L+     + + +G   KTPLH     + +   D+V  +L A G    
Sbjct: 20  LNASNVTVEEVRRLLAAGADV-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVN 77

Query: 140 DVSVQRETVLHLAVKNNQ-FEVVRALVDWIRDVKKENILNMKDKQGNTALH--LATWKRE 196
                  T LHL + N    +V++ L+    DV      N KDK G T LH  L+ +   
Sbjct: 78  APERCGFTPLHLYLYNATTLDVIKLLIKAGADV------NAKDKVGRTPLHVYLSGFNIN 131

Query: 197 CQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSF 233
            +V+ LLL  GA+      VNA +  G+T L VLL  
Sbjct: 132 PKVIRLLLRKGAD------VNALDLYGMTPLAVLLKS 162

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.6 bits (136), Expect = 2e-08
 Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 19/146 (13%)

Query: 79  SPMHMASA-NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGEC 137
           +P+H AS  +   D+V  L++    + + +    KTP+H+AA++  V +++ +L  YG  
Sbjct: 343 TPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLD-YGAD 400

Query: 138 AEDVSVQRETVLHLAV-KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRE 196
            E +S +  T LH A+   N +  V+ L+D     +  N+ N K+K  +T LH A  K+ 
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMSVKTLID-----RGANV-NSKNKDLSTPLHYAC-KKN 453

Query: 197 CQ--VVELLLSHGANASGGLEVNATN 220
           C+  V+E+LL +GA      +VNA N
Sbjct: 454 CKLDVIEMLLDNGA------DVNAIN 473

Length = 682

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
           N +D+ G T LHLA      +VV+LLL +GA+      VNA ++ G T L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD------VNAKDNDGRTPL 44

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 42/197 (21%), Positives = 82/197 (41%), Gaps = 37/197 (18%)

Query: 54  GHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKT 113
           G ++ +++II+ K +       +  +P+  A  +G   +V   +K    + H+   +   
Sbjct: 12  GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHIN-TKIPH 70

Query: 114 PLHFAAIKGRV--------------------DVVSEMLSAYGECAEDVSV---QRETVLH 150
           PL   AIK                        +  +M+    +C  DV++   + +T LH
Sbjct: 71  PL-LTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLH 129

Query: 151 LAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANA 210
            A+K    E ++ L ++  DV      N++D  G   +H+A       +++LLL  GA A
Sbjct: 130 YAIKKGDLESIKMLFEYGADV------NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA 183

Query: 211 SGGLEVNATNHSGLTAL 227
                 N  +++G + L
Sbjct: 184 ------NVKDNNGESPL 194

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 27/203 (13%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
           LI A  +GD + ++        I H        +PL  A   G  D +K +I        
Sbjct: 39  LIDAIRSGDAKIVELFIKHGADINHINT--KIPHPLLTAIKIGAHDIIKLLI-------- 88

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEML 131
             N    S + +       D+++ ++     + +++  E KT LH+A  KG ++ + +ML
Sbjct: 89  -DNGVDTSILPIPCIEK--DMIKTILDCGIDV-NIKDAELKTFLHYAIKKGDLESI-KML 143

Query: 132 SAYGECAEDVSVQRET---VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTAL 188
             YG    DV+++ +     +H+A+K+N F++++ L++      K    N+KD  G + L
Sbjct: 144 FEYGA---DVNIEDDNGCYPIHIAIKHNFFDIIKLLLE------KGAYANVKDNNGESPL 194

Query: 189 HLATWKRECQVVELLLSHGANAS 211
           H A    +   ++LL+ HG +  
Sbjct: 195 HNAAEYGDYACIKLLIDHGNHIM 217

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
              T LHLA K    E+V+ L+    D      LN++D  G TAL LA
Sbjct: 15  NGNTPLHLAAKYGALELVQWLLKPGVD------LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 16/206 (7%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEV-NQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           + LH A   G V  V+E++ L   FA +V  +DG +P+H+A+   ++D+++ L+      
Sbjct: 70  SELHDAVEEGDVKAVEELLDLG-KFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD- 127

Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
             +   ++ +PLH A + G +  + E+L  +  C +       T L +A+      + + 
Sbjct: 128 PDIPNTDKFSPLHLAVMMGDIKGI-ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM 186

Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG 223
           L+D        NI          AL  A    +  +V L +  GA+ +    +       
Sbjct: 187 LLD-----SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEEC-- 239

Query: 224 LTALDVLLSF----PSEAGDREIEEI 245
            T LD++ +      SEA D  I +I
Sbjct: 240 -TILDMICNMCTNLESEAIDALIADI 264

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL 204
           T LH A  + + E+V+ L++     K  +I N  D+ GNTALH+A      +V++LLL
Sbjct: 3   TALHKAAISGRLELVKYLLE-----KGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
           T LH AAI GR+++V + L   G           T LH+A +N   EV++ L+
Sbjct: 3   TALHKAAISGRLELV-KYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 34/183 (18%)

Query: 57  DFVKEIIRL--KPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTP 114
             +K I  +    +++   +   F P+H A     +DVV+ L+     + +       TP
Sbjct: 15  TILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV-NQPDHRDLTP 73

Query: 115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL---------- 164
           LH    +     + EM+ +  +C   V       +  A  N   E+ + +          
Sbjct: 74  LHIICKEPNKLGMKEMIRSINKC--SVFYT-LVAIKDAFNNRNVEIFKIILTNRYKNIQT 130

Query: 165 --VDWIRDVKKENIL---------------NMKDK-QGNTALHLATWKRECQVVELLLSH 206
             + +I    K++I+               NMKD+ +GNTALH AT  ++ ++ ELLLS+
Sbjct: 131 IDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY 190

Query: 207 GAN 209
           GAN
Sbjct: 191 GAN 193

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVR 94
            LH A+  G ++ VK ++    D     ++DG + +H+A+ NG ++V++
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)

Query: 183 QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNH 221
            GNT LHLA      +VV+LLL  GA+      VNA + 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD------VNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
            T LH+A       + +E+L +YG           + LH AVK+    +V  L+      
Sbjct: 169 NTALHYATENKDQRL-TELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL------ 221

Query: 172 KKENILNMKDKQGNTALHLATWK-RECQVVELLLSHGANASGGLEVNATNH-SGLTAL 227
           +     + +DK GNT LH++    ++  +++LLL HG +      VNA ++  GLTAL
Sbjct: 222 ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD------VNAKSYILGLTAL 273

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
           LN  D  GNT LHLA      ++V+ LL  G +       N  +  GLTALD
Sbjct: 9   LNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL------NLRDSDGLTALD 54

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 31/140 (22%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
            TP+H+AA +G   +V+ +LS YG     +++   +VL  AV +   + ++A++D   ++
Sbjct: 179 ITPIHYAAERGNAKMVNLLLS-YGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNI 237

Query: 172 KKENI-----------------------LNMKDKQGNTALHLATWKRE-CQVVELLLSHG 207
            K ++                       +N  D   NT LH A+      ++V  LL  G
Sbjct: 238 NKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG 297

Query: 208 ANASGGLEVNATNHSGLTAL 227
           A      +VNA N  G T L
Sbjct: 298 A------DVNAKNIKGETPL 311

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 73  VNQDGFSPMHMASANGQIDVVRGLMKF--DQKLCHLQGPERKTPLHFAAIKGRVDVVSEM 130
            + DG +P+H+A ANG + VVR L++F  D  L    G   KTPL  A   G  +VV ++
Sbjct: 111 RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG---KTPLELAEENGFREVV-QL 166

Query: 131 LSAYGECAED 140
           LS + +C  +
Sbjct: 167 LSRHSQCHFE 176

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH+A A GHV  V+ ++    D    +++DG +P+ +A  NG  +VV+ L +  Q  CH
Sbjct: 118 PLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFREVVQLLSRHSQ--CH 174

Query: 106 LQGPERKTPLHFAAIKG 122
            +      P  F     
Sbjct: 175 FELGANAKPDSFTGKPP 191

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 30/170 (17%)

Query: 46  PLHVASAY--GHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQID--VVRGLMKFDQ 101
           PL  A +        V+ ++    +     N DG + +H+   + +ID  +++ L+    
Sbjct: 109 PLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGV 167

Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
            +                 K RV+     L +YG       V   T LH AV NN  E V
Sbjct: 168 DI---------------NAKNRVN----YLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208

Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS 211
           + L+D        N  N+ +K G+T LH+A      ++ +LLL++G +  
Sbjct: 209 KYLLD-----LGANP-NLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 98  KFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA 152
           +      +       TPLH AA  G +++V + L   G           T L LA
Sbjct: 3   EHGPIDLNATDGNGNTPLHLAAKYGALELV-QWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 43  AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102
           A N L VAS  G+   ++E+++ K D     +  G +P+H+A++ G  D V  L+K    
Sbjct: 526 ASNLLTVAST-GNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN 583

Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE-TVLHLAVKNNQFEVV 161
           + H++     T L  A          ++       A          +L  A K N    +
Sbjct: 584 V-HIRDANGNTALWNAISAKH----HKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAM 638

Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
           + L+    +V  E      D QG TAL +A  +    +V LL+ +GA+
Sbjct: 639 KELLKQGLNVDSE------DHQGATALQVAMAEDHVDMVRLLIMNGAD 680

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 28/131 (21%)

Query: 98  KFDQKLCHLQGPERK--TPLHFAAIKGRVD-VVSEML-------SAYGECA--------- 138
           + D  L  L+  E K  TP H    +  +D VV+ ML       +A G+           
Sbjct: 46  RIDTHLEALEATENKDATPDHNLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGG 105

Query: 139 ---EDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR 195
                      T LH+A  N   +VVR L+++  D        + DK G T L LA    
Sbjct: 106 ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP------TLLDKDGKTPLELAEENG 159

Query: 196 ECQVVELLLSH 206
             +VV+LL  H
Sbjct: 160 FREVVQLLSRH 170

Length = 664

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	455
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	99.98
PHA02876	682	ankyrin repeat protein; Provisional	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
PF13962	113	PGG: Domain of unknown function	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.51
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.39
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.37
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.37
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.35
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.29
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.92
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.85
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.8
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.65
PF13606	30	Ank_3: Ankyrin repeat	98.57
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.56
KOG0522	560	consensus Ankyrin repeat protein [General function	98.56
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.56
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.55
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.5
KOG0522	560	consensus Ankyrin repeat protein [General function	98.49
PF13606	30	Ank_3: Ankyrin repeat	98.43
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.41
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.37
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.29
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.22
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.11
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.11
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.09
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.01
KOG0511	516	consensus Ankyrin repeat protein [General function	97.91
KOG0511	516	consensus Ankyrin repeat protein [General function	97.88
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.76
KOG2384	223	consensus Major histocompatibility complex protein	97.63
KOG2384	223	consensus Major histocompatibility complex protein	97.59
KOG2505	591	consensus Ankyrin repeat protein [General function	96.8
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.25
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.17
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.52
KOG2505	591	consensus Ankyrin repeat protein [General function	94.46
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.0
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.42
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.34
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.32
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.17

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-38  Score=260.37  Aligned_cols=209  Identities=26%  Similarity=0.363  Sum_probs=192.6

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      +.++.+.+++......++.++++.+..+....+.+|+||||+||..|+.+++++|++.....++..|+.||||||.||..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            34678889999999999999999997777776667999999999999999999999755444677799999999999999


Q ss_pred             CCHHHHHHHHhc-CccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 012836           88 GQIDVVRGLMKF-DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD  166 (455)
Q Consensus        88 g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  166 (455)
                      |+.++|+.|+.+ ++++ +..++.|.||||+|+..|+.+++++|+++ |+.++.+|..|.||||-|+.-|..+++++|+.
T Consensus        83 g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~-ga~i~~kD~~~qtplHRAAavGklkvie~Li~  160 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEK-GALIRIKDKQGQTPLHRAAAVGKLKVIEYLIS  160 (226)
T ss_pred             CcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhc-CCCCcccccccCchhHHHHhccchhhHHHHHh
Confidence            999999999999 7777 88999999999999999999999999998 89999999999999999999999999999999


Q ss_pred             HhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          167 WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       167 ~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      .|+..      |..|..|+||||.|...|+.++..+|+++|+      +++..|++| ||+.++.
T Consensus       161 ~~a~~------n~qDk~G~TpL~~al~e~~~d~a~lLV~~gA------d~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  161 QGAPL------NTQDKYGFTPLHHALAEGHPDVAVLLVRAGA------DTDREDKEG-TALRIAC  212 (226)
T ss_pred             cCCCC------CcccccCccHHHHHHhccCchHHHHHHHhcc------ceeeccccC-chHHHHH
Confidence            88776      9999999999999988899999999999999      899999998 9998873

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-36  Score=282.28  Aligned_cols=220  Identities=19%  Similarity=0.237  Sum_probs=194.1

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      ..|..|.||||.|+..|+.++++.|++.+......    .+.||||+|+..|+.++++.|++.+.+ .+..|..|+||||
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~----d~~TpLh~Aa~~g~~eiV~lLL~~Gad-vn~~d~~G~TpLh   99 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGMD-DSQFDDKGNTALY   99 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence            45778999999999999999999999988755332    378999999999999999999999987 5778999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCC-CCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHH
Q 012836           83 MASANGQIDVVRGLMKFDQKLCHLQGPER-KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV  161 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  161 (455)
                      +|+..|+.+++++|++.++++ +.++..| .||||+|+..|+.+++++|+++.+...+.  ..|.||||+|++.|+.+++
T Consensus       100 ~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--~~g~TpLh~Aa~~g~~eiv  176 (284)
T PHA02791        100 YAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMM  176 (284)
T ss_pred             HHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--ccCccHHHHHHHcCCHHHH
Confidence            999999999999999999998 6677777 48999999999999999999974432211  3589999999999999999


Q ss_pred             HHHHHHhhhhcccccccccCCCCCcH-HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCch
Q 012836          162 RALVDWIRDVKKENILNMKDKQGNTA-LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDR  240 (455)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~  240 (455)
                      ++|+++|+++      |.+|..|.|| ||+|+..|+.+++++|+++|+      +++.+|.+| ++|          +..
T Consensus       177 ~lLL~~gAd~------n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga------~in~~~~~~-~~l----------~~~  233 (284)
T PHA02791        177 ILLLDYMTST------NTNNSLLFIPDIKLAIDNKDLEMLQALFKYDI------NIYSVNLEN-VLL----------DDA  233 (284)
T ss_pred             HHHHHCCCCC------CcccCCCCChHHHHHHHcCCHHHHHHHHHCCC------CCccCcccC-ccC----------CCH
Confidence            9999999987      8899999987 999999999999999999999      889999854 666          456


Q ss_pred             hHHHHHHHhcccc
Q 012836          241 EIEEIFWSAGAMR  253 (455)
Q Consensus       241 ~i~~~L~~~ga~~  253 (455)
                      |++++|+++.++-
T Consensus       234 e~~~~ll~~~~~~  246 (284)
T PHA02791        234 EIAKMIIEKHVEY  246 (284)
T ss_pred             HHHHHHHHhhhhh
Confidence            8999999988754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-34  Score=288.51  Aligned_cols=227  Identities=21%  Similarity=0.255  Sum_probs=206.4

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      .+++||.|+..|+.+.++.|++.+.+.....  ..|.||||+|+..|+.+++++|++++.+ .+..+..|.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEI--YDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHHHHHC
Confidence            3689999999999999999999987665432  3599999999999999999999999986 456678899999999999


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHH
Q 012836           88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW  167 (455)
Q Consensus        88 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  167 (455)
                      |+.+++++|++.++......+.+|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999887667788899999999999999999999998 899999999999999999999999999999999


Q ss_pred             hhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCC-CHHHHHhhCCCCcCchhHHHHH
Q 012836          168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL-TALDVLLSFPSEAGDREIEEIF  246 (455)
Q Consensus       168 g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~-t~l~~a~~~~~~~~~~~i~~~L  246 (455)
                      |+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++..+..|. ||+++|+.    .++.+++++|
T Consensus       158 g~~~------~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga------~~n~~~~~~~~t~l~~A~~----~~~~~iv~~L  221 (413)
T PHA02875        158 KACL------DIEDCCGCTPLIIAMAKGDIAICKMLLDSGA------NIDYFGKNGCVAALCYAIE----NNKIDIVRLF  221 (413)
T ss_pred             CCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------CCCcCCCCCCchHHHHHHH----cCCHHHHHHH
Confidence            8886      8899999999999999999999999999999      7888888875 78998864    4788999999


Q ss_pred             HHhccccc
Q 012836          247 WSAGAMRM  254 (455)
Q Consensus       247 ~~~ga~~~  254 (455)
                      +++|++..
T Consensus       222 l~~gad~n  229 (413)
T PHA02875        222 IKRGADCN  229 (413)
T ss_pred             HHCCcCcc
Confidence            99999654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.5e-34  Score=286.26  Aligned_cols=243  Identities=22%  Similarity=0.298  Sum_probs=181.5

Q ss_pred             cCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc--------------
Q 012836            4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF--------------   69 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--------------   69 (455)
                      .++.+.||||.|+..|+.++++.|++.+.+....  ...|.||||.|+..|+.+++++|++++.+.              
T Consensus        31 ~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~--~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~  108 (434)
T PHA02874         31 SVDETTTPLIDAIRSGDAKIVELFIKHGADINHI--NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIK  108 (434)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHH
Confidence            4556778888888888888888888877665432  234778888888888888888888776432              


Q ss_pred             --------hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccc
Q 012836           70 --------AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV  141 (455)
Q Consensus        70 --------~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~  141 (455)
                              .+..|..|.||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++. |.+++..
T Consensus       109 ~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-g~~~n~~  186 (434)
T PHA02874        109 TILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEK-GAYANVK  186 (434)
T ss_pred             HHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCC
Confidence                    2345677888888888888888888888888777 67778888888888888888888888876 7777777


Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCC
Q 012836          142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNH  221 (455)
Q Consensus       142 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~  221 (455)
                      +..|+||||+|+..|+.+++++|++.|+++      +.++..|.||||+|+..+. +.+++|+ .|+      +++.+|.
T Consensus       187 ~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i------~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~------~in~~d~  252 (434)
T PHA02874        187 DNNGESPLHNAAEYGDYACIKLLIDHGNHI------MNKCKNGFTPLHNAIIHNR-SAIELLI-NNA------SINDQDI  252 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------cCCCCCCCCHHHHHHHCCh-HHHHHHH-cCC------CCCCcCC
Confidence            888888888888888888888888877765      6677778888888877654 4555555 455      6788888


Q ss_pred             CCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccc
Q 012836          222 SGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNC  276 (455)
Q Consensus       222 ~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
                      .|.||||+|+..   ....+++++|+++|+..         +.++..|.+|+...
T Consensus       253 ~G~TpLh~A~~~---~~~~~iv~~Ll~~gad~---------n~~d~~g~TpL~~A  295 (434)
T PHA02874        253 DGSTPLHHAINP---PCDIDIIDILLYHKADI---------SIKDNKGENPIDTA  295 (434)
T ss_pred             CCCCHHHHHHhc---CCcHHHHHHHHHCcCCC---------CCCCCCCCCHHHHH
Confidence            999999998642   24678999999998854         33445666665443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-35  Score=242.82  Aligned_cols=196  Identities=28%  Similarity=0.363  Sum_probs=175.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCC-cchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKP-DFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      +.++.+.+|......-++++++..+ ++..+.|.+|+||||+||+.|+.+++.+|++.-....+-+|..|+||||+||..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            4678888899888889999999988 444444559999999999999999999999644444477899999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      |+.|+|+.|+.+.+.+++..++.|+|+||||+..|+.++.++|+++|+.+      +.+|..|.||||-|+..|+.++++
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i------~~kD~~~qtplHRAAavGklkvie  156 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI------RIKDKQGQTPLHRAAAVGKLKVIE  156 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC------cccccccCchhHHHHhccchhhHH
Confidence            99999999999999999999999999999999999999999999999877      999999999999999999999999


Q ss_pred             HHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          202 LLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       202 ~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      +|+..|+      .+|..|+.|+||||.|.    ..++.+...+|.++||.-.
T Consensus       157 ~Li~~~a------~~n~qDk~G~TpL~~al----~e~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  157 YLISQGA------PLNTQDKYGFTPLHHAL----AEGHPDVAVLLVRAGADTD  199 (226)
T ss_pred             HHHhcCC------CCCcccccCccHHHHHH----hccCchHHHHHHHhcccee
Confidence            9999998      89999999999999993    2357788889999998543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-33  Score=260.60  Aligned_cols=210  Identities=16%  Similarity=0.079  Sum_probs=184.7

Q ss_pred             cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHH
Q 012836           18 TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLM   97 (455)
Q Consensus        18 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll   97 (455)
                      .++.++++.|++.++..    .+..|.||||+|+..|+.++++.|++.+++. +..  +|.||||+|+..|+.+++++|+
T Consensus         9 ~~~~~~~~~Lis~~a~~----~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK----ADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHhCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHHHHHHH
Confidence            46788999999877632    2345999999999999999999999998763 332  4799999999999999999999


Q ss_pred             hcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCC-cHHHHHHHcCCHHHHHHHHHHhhhhccccc
Q 012836           98 KFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE-TVLHLAVKNNQFEVVRALVDWIRDVKKENI  176 (455)
Q Consensus        98 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~  176 (455)
                      +.+++. +.+|..|+||||+|+..|+.++++.|++. +.+++..+..|+ ||||+|+..|+.+++++|++++.+.     
T Consensus        82 ~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~-----  154 (284)
T PHA02791         82 FSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-----  154 (284)
T ss_pred             HCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc-----
Confidence            999988 88999999999999999999999999997 788888888884 8999999999999999999875432     


Q ss_pred             ccccC-CCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCH-HHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          177 LNMKD-KQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTA-LDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       177 ~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~-l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                         .| ..|+||||+|+..|+.+++++|+++|+      +++.+|..|.|| ||+|+    ..++.+++++|+++|+...
T Consensus       155 ---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA------d~n~~d~~g~t~~L~~Aa----~~~~~e~v~lLl~~Ga~in  221 (284)
T PHA02791        155 ---FDLAILLSCIHITIKNGHVDMMILLLDYMT------STNTNNSLLFIPDIKLAI----DNKDLEMLQALFKYDINIY  221 (284)
T ss_pred             ---cccccCccHHHHHHHcCCHHHHHHHHHCCC------CCCcccCCCCChHHHHHH----HcCCHHHHHHHHHCCCCCc
Confidence               23 358999999999999999999999999      789999999987 99996    4589999999999999653

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=285.79  Aligned_cols=232  Identities=20%  Similarity=0.305  Sum_probs=156.1

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHH-----HHHcCCHHHHHHHHHcCCcchhhhcCCCCc
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHV-----ASAYGHVDFVKEIIRLKPDFAKEVNQDGFS   79 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   79 (455)
                      +..+.||||.|+..|+.++++.|++++.+.....  ..+.||||.     |+..|+.++++.|++.++++ +..|..|.|
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~--~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~t  108 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSST--KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGIT  108 (480)
T ss_pred             hcccchhhhhhhccCCHHHHHHHHHcCCCCCCcc--ccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCc
Confidence            4456677788877777777887777776554332  246777777     77777777777777777764 666777777


Q ss_pred             HHHHHH--HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC--CHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836           80 PMHMAS--ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG--RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN  155 (455)
Q Consensus        80 pLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  155 (455)
                      |||+|+  ..|+.+++++|++.+++. +..+..|.||||.|+..|  +.++++.|+++ |.+++..|..|.||||+|+..
T Consensus       109 pL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tpL~~A~~~  186 (480)
T PHA03100        109 PLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTPLHIAVEK  186 (480)
T ss_pred             hhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCHHHHHHHh
Confidence            777777  777777777777777776 666777777777777777  77777777776 666777777777777777777


Q ss_pred             CCHHHHHHHHHHhhhhccc-----------------------------------ccccccCCCCCcHHHHHHhcCChHHH
Q 012836          156 NQFEVVRALVDWIRDVKKE-----------------------------------NILNMKDKQGNTALHLATWKRECQVV  200 (455)
Q Consensus       156 ~~~~~v~~Ll~~g~~~~~~-----------------------------------~~~~~~d~~G~T~Lh~A~~~~~~~iv  200 (455)
                      |+.+++++|+++|+++...                                   ..++.+|..|+||||+|+..|+.+++
T Consensus       187 ~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv  266 (480)
T PHA03100        187 GNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV  266 (480)
T ss_pred             CCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            7777777777777665100                                   11245555566666666666666666


Q ss_pred             HHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcc
Q 012836          201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       201 ~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga  251 (455)
                      ++|+++|+      +++.+|..|.||+++|..    .+..+++++|+++|+
T Consensus       267 ~~Ll~~ga------d~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~  307 (480)
T PHA03100        267 KYLLDLGA------NPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGP  307 (480)
T ss_pred             HHHHHcCC------CCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCC
Confidence            66666655      555566666666666542    245556666666555

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-33  Score=286.27  Aligned_cols=236  Identities=22%  Similarity=0.350  Sum_probs=202.0

Q ss_pred             cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHH-----HHHcCCHHH
Q 012836           18 TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHM-----ASANGQIDV   92 (455)
Q Consensus        18 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~-----Aa~~g~~~i   92 (455)
                      ....+.++.+++++ ... ......+.||||.|+..|+.++|+.|+++|.+ ++..+..|.||||+     |+..|+.++
T Consensus        12 ~~~~~~~~~~~~~~-~~~-~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~i   88 (480)
T PHA03100         12 IIKVKNIKYIIMED-DLN-DYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEI   88 (480)
T ss_pred             HHHHHHHHHHHhcC-ccc-hhhhcccchhhhhhhccCCHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHH
Confidence            34457788888654 222 23334589999999999999999999999987 56778899999999     999999999


Q ss_pred             HHHHHhcCccccccCCCCCCCHHHHHH--HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcC--CHHHHHHHHHHh
Q 012836           93 VRGLMKFDQKLCHLQGPERKTPLHFAA--IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN--QFEVVRALVDWI  168 (455)
Q Consensus        93 v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~g  168 (455)
                      +++|++.|+++ +..|..|.||||+|+  ..|+.+++++|++. |.+++..+..|.||||+|+..+  +.+++++|+++|
T Consensus        89 v~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g  166 (480)
T PHA03100         89 VKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG  166 (480)
T ss_pred             HHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC
Confidence            99999999998 889999999999999  99999999999997 8899999999999999999999  999999999999


Q ss_pred             hhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCC-----------------------------------CC
Q 012836          169 RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS-----------------------------------GG  213 (455)
Q Consensus       169 ~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~-----------------------------------~~  213 (455)
                      +++      +.+|..|+||||+|+..|+.+++++|+++|++..                                   .+
T Consensus       167 ~di------n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g  240 (480)
T PHA03100        167 VDI------NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG  240 (480)
T ss_pred             CCc------ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC
Confidence            887      8888899999999999999999999988887643                                   12


Q ss_pred             ccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          214 LEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       214 v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      .+++.+|..|.||||+|+.    .++.+++++|+++|+..         ..++..|.+|+....
T Consensus       241 ~din~~d~~g~TpL~~A~~----~~~~~iv~~Ll~~gad~---------n~~d~~g~tpl~~A~  291 (480)
T PHA03100        241 VPINIKDVYGFTPLHYAVY----NNNPEFVKYLLDLGANP---------NLVNKYGDTPLHIAI  291 (480)
T ss_pred             CCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC---------CccCCCCCcHHHHHH
Confidence            5778899999999999974    46789999999999843         334566777765544

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-32  Score=273.58  Aligned_cols=239  Identities=22%  Similarity=0.343  Sum_probs=205.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcC
Q 012836            9 DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANG   88 (455)
Q Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g   88 (455)
                      ...|+.|+..||++.++.|++.++....... ..|.||||.|+..|+.++|++|++.|++ .+..+..|.||||.|+..|
T Consensus         2 ~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~-~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~~   79 (434)
T PHA02874          2 SQDLRMCIYSGDIEAIEKIIKNKGNCINISV-DETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKIG   79 (434)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcC
Confidence            3579999999999999999988776544333 3589999999999999999999999988 4677889999999999999


Q ss_pred             CHHHHHHHHhcCccc----------------------cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCC
Q 012836           89 QIDVVRGLMKFDQKL----------------------CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE  146 (455)
Q Consensus        89 ~~~iv~~Ll~~~~~~----------------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  146 (455)
                      +.+++++|++.|++.                      .+.+|..|.||||+|+..|+.+++++|++. |.+++..|..|.
T Consensus        80 ~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-gad~n~~d~~g~  158 (434)
T PHA02874         80 AHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGC  158 (434)
T ss_pred             CHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC-CCCCCCcCCCCC
Confidence            999999999887543                      245788999999999999999999999997 889999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCH
Q 012836          147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTA  226 (455)
Q Consensus       147 t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~  226 (455)
                      ||||+|+..++.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.++..|.||
T Consensus       159 tpLh~A~~~~~~~iv~~Ll~~g~~~------n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~------~i~~~~~~g~Tp  226 (434)
T PHA02874        159 YPIHIAIKHNFFDIIKLLLEKGAYA------NVKDNNGESPLHNAAEYGDYACIKLLIDHGN------HIMNKCKNGFTP  226 (434)
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------CCcCCCCCCCCH
Confidence            9999999999999999999999886      8899999999999999999999999999998      788999999999


Q ss_pred             HHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          227 LDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       227 l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      ||.|+..     ..+.+++|+ .|+.         .+.++..|.+|+....
T Consensus       227 L~~A~~~-----~~~~i~~Ll-~~~~---------in~~d~~G~TpLh~A~  262 (434)
T PHA02874        227 LHNAIIH-----NRSAIELLI-NNAS---------INDQDIDGSTPLHHAI  262 (434)
T ss_pred             HHHHHHC-----ChHHHHHHH-cCCC---------CCCcCCCCCCHHHHHH
Confidence            9999753     235566665 3442         2344566777765443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-32  Score=278.66  Aligned_cols=239  Identities=22%  Similarity=0.256  Sum_probs=198.5

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA   84 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   84 (455)
                      +.-+.||||.|+..|+.++++.|++.+.+....  +..|.||||+||..|+.++++.|++.+....   ...+.+|+|.|
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~~l~~a  108 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQP--DHRDLTPLHIICKEPNKLGMKEMIRSINKCS---VFYTLVAIKDA  108 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCccHhHHHHHHHHHhccc---cccchhhHHHH
Confidence            335678999999999999999999998766543  3469999999999999999999999865421   14678899999


Q ss_pred             HHcCCHHHHH---------------------------------HHHhcCccccccCCCC-CCCHHHHHHHhCCHHHHHHH
Q 012836           85 SANGQIDVVR---------------------------------GLMKFDQKLCHLQGPE-RKTPLHFAAIKGRVDVVSEM  130 (455)
Q Consensus        85 a~~g~~~iv~---------------------------------~Ll~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~v~~L  130 (455)
                      +..|+.++++                                 +|++.|+++ +.++.+ |.||||+|+..|+.++++.|
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence            9888766554                                 444455555 566777 99999999999999999999


Q ss_pred             HHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhc-CChHHHHHHHhcCCC
Q 012836          131 LSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK-RECQVVELLLSHGAN  209 (455)
Q Consensus       131 l~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~-~~~~iv~~Ll~~ga~  209 (455)
                      ++. |++++..|..|+||||+|+..++.+++++|++.|+++      +.+|..|+||||+|+.. ++.+++++|+++|+ 
T Consensus       188 l~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i------n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~ga-  259 (477)
T PHA02878        188 LSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST------DARDKCGNTPLHISVGYCKDYDILKLLLEHGV-  259 (477)
T ss_pred             HHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCC-
Confidence            987 8889999999999999999999999999999999887      88999999999999975 68999999999998 


Q ss_pred             CCCCccccccCC-CCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          210 ASGGLEVNATNH-SGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       210 ~~~~v~~~~~n~-~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                           +++.++. .|.||||+|.      +..+++++|+++|+..         +..+..|.+|+....
T Consensus       260 -----dvn~~~~~~g~TpLh~A~------~~~~~v~~Ll~~gadi---------n~~d~~g~TpL~~A~  308 (477)
T PHA02878        260 -----DVNAKSYILGLTALHSSI------KSERKLKLLLEYGADI---------NSLNSYKLTPLSSAV  308 (477)
T ss_pred             -----CCCccCCCCCCCHHHHHc------cCHHHHHHHHHCCCCC---------CCcCCCCCCHHHHHH
Confidence                 7888876 7999999993      4578899999999854         344566777755443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-32  Score=276.90  Aligned_cols=245  Identities=20%  Similarity=0.203  Sum_probs=212.5

Q ss_pred             ccCcccCHHHHHHHHcC---CHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCcchhhhcCCCC
Q 012836            3 SYSTRMDRRLIAAALTG---DVQTLQQLFVENPLILHTPAFASAGNPLHVASAYG-HVDFVKEIIRLKPDFAKEVNQDGF   78 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~   78 (455)
                      ..+..|.||||.|+..|   +.++++.|++.+.+......  .|.||||+|+..| +.++++.|++++.+ ++..|..|.
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~--~g~TpLh~A~~~~~~~~iv~lLl~~ga~-in~~~~~g~  118 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER--CGFTPLHLYLYNATTLDVIKLLIKAGAD-VNAKDKVGR  118 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCcHHHHHHHHHcCCC-CCCCCCCCC
Confidence            45677899999999998   99999999999987765443  6999999999999 59999999999988 577899999


Q ss_pred             cHHHHHH--HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC--CHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           79 SPMHMAS--ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG--RVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        79 tpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      ||||+|+  ..++.+++++|++.|+++ +..|..|.||||+|+..+  +.++++.|++. |.+++..|..|+||||+|+.
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~-g~~~~~~d~~g~t~Lh~~~~  196 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDA-GADVYAVDDRFRSLLHHHLQ  196 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHH
Confidence            9999999  566899999999999998 888999999999998876  68999999987 77888889999999999987


Q ss_pred             c--CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCCh--HHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836          155 N--NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKREC--QVVELLLSHGANASGGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       155 ~--~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~--~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a  230 (455)
                      .  ++.++++.|++.|+++      +.+|..|+||||+|+..++.  .+++.|++.|+      +++.+|..|+||||+|
T Consensus       197 ~~~~~~~i~~~Ll~~g~~~------~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~------din~~d~~g~TpLh~A  264 (471)
T PHA03095        197 SFKPRARIVRELIRAGCDP------AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI------SINARNRYGQTPLHYA  264 (471)
T ss_pred             HCCCcHHHHHHHHHcCCCC------cccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC------CCCCcCCCCCCHHHHH
Confidence            5  6789999999999887      88999999999999998875  67888999988      8999999999999999


Q ss_pred             hhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          231 LSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       231 ~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      +.    .++.+++++|+++||..         ...+..|.+|+....
T Consensus       265 ~~----~~~~~~v~~LL~~gad~---------n~~~~~g~tpl~~A~  298 (471)
T PHA03095        265 AV----FNNPRACRRLIALGADI---------NAVSSDGNTPLSLMV  298 (471)
T ss_pred             HH----cCCHHHHHHHHHcCCCC---------cccCCCCCCHHHHHH
Confidence            64    47889999999999954         334556777765443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5e-32  Score=271.24  Aligned_cols=229  Identities=19%  Similarity=0.267  Sum_probs=198.9

Q ss_pred             cCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHH
Q 012836            4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHM   83 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   83 (455)
                      .+..|.||||.|+..|+.++++.|++.+......  ...+.||||.|+..|+.++++.|++.++......+.+|.||||+
T Consensus        31 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  108 (413)
T PHA02875         31 EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHL  108 (413)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHH
Confidence            3557999999999999999999999988754332  23589999999999999999999999987666677889999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836           84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA  163 (455)
Q Consensus        84 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~  163 (455)
                      |+..|+.+++++|++.|+++ +.++.+|.||||+|+..|+.++++.|++. +.+++..|..|+||||+|+..|+.+++++
T Consensus       109 A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~  186 (413)
T PHA02875        109 ATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAMAKGDIAICKM  186 (413)
T ss_pred             HHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999998 88899999999999999999999999997 88899999999999999999999999999


Q ss_pred             HHHHhhhhcccccccccCCCC-CcHHHHHHhcCChHHHHHHHhcCCCCCCCccccc---cCCCCCCHHHHHhhCCCCcCc
Q 012836          164 LVDWIRDVKKENILNMKDKQG-NTALHLATWKRECQVVELLLSHGANASGGLEVNA---TNHSGLTALDVLLSFPSEAGD  239 (455)
Q Consensus       164 Ll~~g~~~~~~~~~~~~d~~G-~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~---~n~~g~t~l~~a~~~~~~~~~  239 (455)
                      |+++|+++      +..+..| .||+|+|+..++.+++++|+++|+      +++.   .+.++.||++++.... ....
T Consensus       187 Ll~~ga~~------n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ga------d~n~~~~~~~~~~t~l~~~~~~~-~~~~  253 (413)
T PHA02875        187 LLDSGANI------DYFGKNGCVAALCYAIENNKIDIVRLFIKRGA------DCNIMFMIEGEECTILDMICNMC-TNLE  253 (413)
T ss_pred             HHhCCCCC------CcCCCCCCchHHHHHHHcCCHHHHHHHHHCCc------CcchHhhcCCCchHHHHHHHhhc-CCcc
Confidence            99999987      7777777 489999999999999999999999      4444   4778999999986442 2233


Q ss_pred             hhHHHHHHHh
Q 012836          240 REIEEIFWSA  249 (455)
Q Consensus       240 ~~i~~~L~~~  249 (455)
                      .+.++.+..+
T Consensus       254 ~~~~~~li~~  263 (413)
T PHA02875        254 SEAIDALIAD  263 (413)
T ss_pred             cHHHHHHHHH
Confidence            4455555433

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.3e-32  Score=270.84  Aligned_cols=233  Identities=15%  Similarity=0.208  Sum_probs=144.1

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCC--HHHHHHHHHcCCcchhhhcCCCCcH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGH--VDFVKEIIRLKPDFAKEVNQDGFSP   80 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~tp   80 (455)
                      ..+..|.||||.|+..|+.++++.|++.+.+....  +..|.||||+|+..++  .++++.|+++++++....|..|.||
T Consensus        67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~--d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         67 ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNAC--DKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence            34556667777777777777777777666554322  2346677776665543  5666677766666443456666777


Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC--CHHHHHHHHHhcCccccccccCCCcHHHHHHHcC--
Q 012836           81 MHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG--RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN--  156 (455)
Q Consensus        81 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~--  156 (455)
                      || ||..|+.+++++|++.+++. +.+|..|+||||.|+..+  +.+++++|++. |.+++..|.+|+||||+|+..+  
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~~~  221 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKL-GISPSKPDHDGNTPLHIVCSKTVK  221 (446)
T ss_pred             HH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCC
Confidence            75 55556667777777666665 666667777777766543  34667666665 6667777777777777777664  


Q ss_pred             CHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCC-hHHHHHHHhcCCCCCCCc--------------ccccc-C
Q 012836          157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRE-CQVVELLLSHGANASGGL--------------EVNAT-N  220 (455)
Q Consensus       157 ~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~-~~iv~~Ll~~ga~~~~~v--------------~~~~~-n  220 (455)
                      +.+++++|++ |+++      |.+|..|+||||+|+..++ .+++++|+++|+......              .++.. +
T Consensus       222 ~~~iv~lLl~-gadi------n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~  294 (446)
T PHA02946        222 NVDIINLLLP-STDV------NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGK  294 (446)
T ss_pred             cHHHHHHHHc-CCCC------CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCc
Confidence            5667776664 5554      6677777777777777666 366777777665211000              01111 1


Q ss_pred             CCCCCHHHHHhhCCCCcCchhHHHHHHHhcc
Q 012836          221 HSGLTALDVLLSFPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       221 ~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga  251 (455)
                      ..|.||||+|+    ..++.+++++|+++|+
T Consensus       295 ~~~~TpLh~Aa----~~g~~eivk~Ll~~~~  321 (446)
T PHA02946        295 QYDSTDFKMAV----EVGSIRCVKYLLDNDI  321 (446)
T ss_pred             ccCCCHHHHHH----HcCCHHHHHHHHHCCC
Confidence            24567777775    3467777777777664

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=9.4e-32  Score=261.71  Aligned_cols=206  Identities=28%  Similarity=0.373  Sum_probs=185.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhc-CCCCcHHHHHHHcC
Q 012836           10 RRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVN-QDGFSPMHMASANG   88 (455)
Q Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpLh~Aa~~g   88 (455)
                      ..++.|+++|+++.++.+++.........+ .+|.|+||+||.+++.+++++|++++++. +... .-|.||||+|+++|
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D-~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPD-REGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCC-cCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHcC
Confidence            457899999999999999998433333333 36999999999999999999999999984 5555 77899999999999


Q ss_pred             CHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHh
Q 012836           89 QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWI  168 (455)
Q Consensus        89 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g  168 (455)
                      +..+|.+|+++|+++ ..+|.+|.+|||.|+..|+.-++-+|+.+ +.+++.+|.+|+||||+|+.+|....++.|++.|
T Consensus       124 ~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~-~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSK-GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHh-cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            999999999999999 99999999999999999999999999999 6999999999999999999999988899999988


Q ss_pred             hhhcccccccccC-CCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          169 RDVKKENILNMKD-KQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       169 ~~~~~~~~~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      +.+      +.+| +.|+||||+|+..|+..++++|++.|+      +.+..|.+|+||+++|.
T Consensus       202 a~~------~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~------~~d~~~~~g~tp~~LA~  253 (600)
T KOG0509|consen  202 ASL------LLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGA------DLDKTNTNGKTPFDLAQ  253 (600)
T ss_pred             ccc------cccccccCCchHHHHHhcCCcceEehhhhcCC------cccccccCCCCHHHHHH
Confidence            877      6666 999999999999999999996666666      78889999999999995

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.8e-32  Score=269.66  Aligned_cols=224  Identities=20%  Similarity=0.229  Sum_probs=194.9

Q ss_pred             cCHHHHHHHH--cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836            8 MDRRLIAAAL--TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS   85 (455)
Q Consensus         8 ~~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa   85 (455)
                      ..+.||.++.  .++.++++.|++.+.+.....  ..|.||||+|+..|+.++++.|++++++ ++.+|.+|.||||+|+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d--~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~  113 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETD--DDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLS  113 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccC--CCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHH
Confidence            3688998764  457899999999998765443  3599999999999999999999999988 5778999999999999


Q ss_pred             HcCC--HHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCC--HHHH
Q 012836           86 ANGQ--IDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ--FEVV  161 (455)
Q Consensus        86 ~~g~--~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~--~~~v  161 (455)
                      ..++  .+++++|+++|+++....|.+|.|||| |+..|+.++++.|++. +.+++..|..|+||||+|+..++  .+++
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-gad~~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI-GFEARIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc-cccccccCCCCCCHHHHHHHhcCCCHHHH
Confidence            8764  899999999999985567899999998 6777999999999987 89999999999999999987655  6899


Q ss_pred             HHHHHHhhhhcccccccccCCCCCcHHHHHHhcC--ChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCc
Q 012836          162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKR--ECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGD  239 (455)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~--~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~  239 (455)
                      ++|+++|+++      +.+|.+|+||||+|+..+  +.+++++|++ |+      +++.+|..|.||||+|+..   ...
T Consensus       192 ~~Ll~~Gadi------n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga------din~~d~~G~TpLh~A~~~---~~~  255 (446)
T PHA02946        192 SWMMKLGISP------SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST------DVNKQNKFGDSPLTLLIKT---LSP  255 (446)
T ss_pred             HHHHHcCCCC------cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC------CCCCCCCCCCCHHHHHHHh---CCh
Confidence            9999999987      899999999999999876  7899999985 77      8999999999999999743   223


Q ss_pred             hhHHHHHHHhccc
Q 012836          240 REIEEIFWSAGAM  252 (455)
Q Consensus       240 ~~i~~~L~~~ga~  252 (455)
                      .+++++|+++|+.
T Consensus       256 ~~~~~~Ll~~g~~  268 (446)
T PHA02946        256 AHLINKLLSTSNV  268 (446)
T ss_pred             HHHHHHHHhCCCC
Confidence            5889999999874

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.6e-32  Score=274.01  Aligned_cols=231  Identities=16%  Similarity=0.198  Sum_probs=206.0

Q ss_pred             cccCcccCHHHHHHHHcC-CHHHHHHHHhcCCcccCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCcchhhhcCCCC
Q 012836            2 TSYSTRMDRRLIAAALTG-DVQTLQQLFVENPLILHTPAFASAGNPLHVAS--AYGHVDFVKEIIRLKPDFAKEVNQDGF   78 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~   78 (455)
                      +..+..|.||||.|+..| +.++++.|++.+.+....  +..|.||||+|+  ..++.++++.|++++++ ++..|..|.
T Consensus        77 n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~--~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~  153 (471)
T PHA03095         77 NAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAK--DKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGM  153 (471)
T ss_pred             CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCC
Confidence            345678999999999999 599999999998876543  235999999999  56789999999999988 577899999


Q ss_pred             cHHHHHHHcC--CHHHHHHHHhcCccccccCCCCCCCHHHHHHHh--CCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           79 SPMHMASANG--QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK--GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        79 tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      ||||+|+..+  +.+++++|++.+++. ...|..|.||||+|+..  ++.++++.|++. |.+++..|..|+||||+|+.
T Consensus       154 tpL~~a~~~~~~~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~  231 (471)
T PHA03095        154 TPLAVLLKSRNANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPLHSMAT  231 (471)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHh
Confidence            9999998876  689999999999998 55599999999999975  788999999987 89999999999999999999


Q ss_pred             cCCH--HHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836          155 NNQF--EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS  232 (455)
Q Consensus       155 ~~~~--~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~  232 (455)
                      .|+.  .+++.+++.|.++      |.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.|||++|+.
T Consensus       232 ~~~~~~~~v~~ll~~g~di------n~~d~~g~TpLh~A~~~~~~~~v~~LL~~ga------d~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        232 GSSCKRSLVLPLLIAGISI------NARNRYGQTPLHYAAVFNNPRACRRLIALGA------DINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             cCCchHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCCCHHHHHHH
Confidence            9874  6888899988887      9999999999999999999999999999999      899999999999999964


Q ss_pred             CCCCcCchhHHHHHHHhcccc
Q 012836          233 FPSEAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       233 ~~~~~~~~~i~~~L~~~ga~~  253 (455)
                          .++.++++.|++.++..
T Consensus       300 ----~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        300 ----NNNGRAVRAALAKNPSA  316 (471)
T ss_pred             ----hCCHHHHHHHHHhCCCH
Confidence                47889999999988754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.1e-31  Score=276.88  Aligned_cols=240  Identities=15%  Similarity=0.108  Sum_probs=171.1

Q ss_pred             ccCcccCHHHHHHHHcCC--HHHHHHHHhcCCcccCCCCCCCCChHHHHH------------------------------
Q 012836            3 SYSTRMDRRLIAAALTGD--VQTLQQLFVENPLILHTPAFASAGNPLHVA------------------------------   50 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A------------------------------   50 (455)
                      ..+..|.||||.|+..|+  .++++.|++.+++....  +..|.||||.|                              
T Consensus       207 ~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k--D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~  284 (764)
T PHA02716        207 LQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK--CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMI  284 (764)
T ss_pred             CCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhh
Confidence            345667777777777774  47777777777665443  23477777754                              


Q ss_pred             -------HHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH--cCCHHHHHHHHhcCccccccCCCCCCCHHHHHHH-
Q 012836           51 -------SAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA--NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI-  120 (455)
Q Consensus        51 -------~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~-  120 (455)
                             +..|+.++++.|++.+++ ++.+|..|+||||+|+.  .++.+++++|++.|+++ +.+|..|+||||+|+. 
T Consensus       285 L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        285 LHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHh
Confidence                   334667777777777766 45667778888887654  35677888888877776 6777788888887764 


Q ss_pred             -------------hCCHHHHHHHHHhcCccccccccCCCcHHHHH----HHcCCHHHHHHHHHHhhhhc-----------
Q 012836          121 -------------KGRVDVVSEMLSAYGECAEDVSVQRETVLHLA----VKNNQFEVVRALVDWIRDVK-----------  172 (455)
Q Consensus       121 -------------~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A----~~~~~~~~v~~Ll~~g~~~~-----------  172 (455)
                                   .++.+++++|+++ |++++..|..|+||||.+    ...++.+++++|++.+....           
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~  441 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLI  441 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhh
Confidence                         2577888888876 777888888888888732    22456777777776542100           


Q ss_pred             --------------------------------------------ccccccccCCCCCcHHHHHHhcCCh-----HHHHHH
Q 012836          173 --------------------------------------------KENILNMKDKQGNTALHLATWKREC-----QVVELL  203 (455)
Q Consensus       173 --------------------------------------------~~~~~~~~d~~G~T~Lh~A~~~~~~-----~iv~~L  203 (455)
                                                                  .....|..|..|+||||+|+..|+.     +++++|
T Consensus       442 ~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~L  521 (764)
T PHA02716        442 RVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYL  521 (764)
T ss_pred             ccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHH
Confidence                                                        0001255688999999999999876     455999


Q ss_pred             HhcCCCCCCCccccccCCCCCCHHHHHhhCCCC-cCchhHHHHHHHhcccc
Q 012836          204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSE-AGDREIEEIFWSAGAMR  253 (455)
Q Consensus       204 l~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~-~~~~~i~~~L~~~ga~~  253 (455)
                      ++.|+      ++|.+|++|+||||+|.+.... ..+.++++.|++.|+..
T Consensus       522 L~~GA------DIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~  566 (764)
T PHA02716        522 LSIQY------NINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNV  566 (764)
T ss_pred             HhCCC------CCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCc
Confidence            99999      8999999999999999765321 33569999999998854

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.3e-31  Score=274.56  Aligned_cols=254  Identities=20%  Similarity=0.164  Sum_probs=206.4

Q ss_pred             CcccCHHHHHHHH--cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCC--HHHHHHHHHcCCcchhhhcCCCCcH
Q 012836            5 STRMDRRLIAAAL--TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGH--VDFVKEIIRLKPDFAKEVNQDGFSP   80 (455)
Q Consensus         5 ~~~~~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~tp   80 (455)
                      +..|.||||.|+.  +++.++++.|++.+.++....  ..|.||||+|+..|+  .++|+.|+++|++ ++.+|..|+||
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD--~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD~~G~TP  250 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQN--NHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKCVNGMSP  250 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            6779999999864  468999999999988765543  359999999999995  5999999999998 67789999999


Q ss_pred             HHHH-------------------------------------HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHH--h
Q 012836           81 MHMA-------------------------------------SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI--K  121 (455)
Q Consensus        81 Lh~A-------------------------------------a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~  121 (455)
                      ||+|                                     +..|+.+++++|++.|+++ +.+|.+|+||||+|+.  .
T Consensus       251 Lh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~  329 (764)
T PHA02716        251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHN  329 (764)
T ss_pred             HHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhC
Confidence            9975                                     4557889999999999997 8899999999999865  4


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHH--------------cCCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK--------------NNQFEVVRALVDWIRDVKKENILNMKDKQGNTA  187 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~--------------~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~  187 (455)
                      ++.+++++|++. |++++..|..|+||||+|+.              .++.+++++|+++|+++      +.+|..|.||
T Consensus       330 ~~~eIVklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI------n~kn~~G~TP  402 (764)
T PHA02716        330 ISTDIIKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI------TAVNCLGYTP  402 (764)
T ss_pred             CCchHHHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCC------CCcCCCCCCh
Confidence            689999999987 89999999999999999875              36899999999999987      8999999999


Q ss_pred             HHHH----HhcCChHHHHHHHhcCCCC-----------------------------------------------------
Q 012836          188 LHLA----TWKRECQVVELLLSHGANA-----------------------------------------------------  210 (455)
Q Consensus       188 Lh~A----~~~~~~~iv~~Ll~~ga~~-----------------------------------------------------  210 (455)
                      ||.+    ...++.+++++|++.|+..                                                     
T Consensus       403 Lh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~  482 (764)
T PHA02716        403 LTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHC  482 (764)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHH
Confidence            9942    2356789999999876410                                                     


Q ss_pred             --CCCccccccCCCCCCHHHHHhhCCC-CcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccccc
Q 012836          211 --SGGLEVNATNHSGLTALDVLLSFPS-EAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIS  278 (455)
Q Consensus       211 --~~~v~~~~~n~~g~t~l~~a~~~~~-~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                        ....+++..|..|+||||+|+.... .....+++++|++.|+..         +.++..|.+|+.....
T Consensus       483 ~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI---------N~~d~~G~TPLh~A~~  544 (764)
T PHA02716        483 AIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI---------NIPTKNGVTPLMLTMR  544 (764)
T ss_pred             HHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC---------cccCCCCCCHHHHHHH
Confidence              0012346678899999999975421 122346779999999953         4566788888765544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.6e-32  Score=266.63  Aligned_cols=234  Identities=24%  Similarity=0.309  Sum_probs=191.4

Q ss_pred             cCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC----cchhhhcCCCCc
Q 012836            4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP----DFAKEVNQDGFS   79 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~t   79 (455)
                      .|+.+.||||.||..|+.|..+.|++.+.+.-.  .+..|++|+|.|++.|..|+.+..+.+.+    ..++..|..|.|
T Consensus       150 ~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K--~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~  227 (929)
T KOG0510|consen  150 EDENGFTPLHLAARKNKVEAKKELINKGADPCK--SDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKAT  227 (929)
T ss_pred             cccCCCchhhHHHhcChHHHHHHHHhcCCCCCc--ccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCc
Confidence            456667788888888888866777776654422  22347788888888888888888777321    114556778899


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccc--------------cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCC
Q 012836           80 PMHMASANGQIDVVRGLMKFDQKL--------------CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR  145 (455)
Q Consensus        80 pLh~Aa~~g~~~iv~~Ll~~~~~~--------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  145 (455)
                      |||.|+..|++++++.+|+.+...              ++-.|++|.||||+||+.|+.+.++.|+.. |.+++.++.++
T Consensus       228 pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~  306 (929)
T KOG0510|consen  228 PLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDE  306 (929)
T ss_pred             chhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCC
Confidence            999999999999999999876543              345689999999999999999999999987 99999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCcccc--ccCCCC
Q 012836          146 ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVN--ATNHSG  223 (455)
Q Consensus       146 ~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~--~~n~~g  223 (455)
                      .||||.|+..|+.+.++-|++ .   ....++|..|..|+||||+|++.|+..++++|++.|+.     ..+  ..|.+|
T Consensus       307 ~spLH~AA~yg~~ntv~rLL~-~---~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~-----~~~~~e~D~dg  377 (929)
T KOG0510|consen  307 ESPLHFAAIYGRINTVERLLQ-E---SDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL-----FLNMSEADSDG  377 (929)
T ss_pred             CCchHHHHHcccHHHHHHHHh-C---cCccccccccccCCCchhhhhhcCHHHHHHHHHhcChh-----hhcccccccCC
Confidence            999999999999999999998 1   23356899999999999999999999999999999994     222  459999


Q ss_pred             CCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836          224 LTALDVLLSFPSEAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       224 ~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~  253 (455)
                      +||||.|+    ..++..+++.|+.+||+-
T Consensus       378 ~TaLH~Aa----~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  378 NTALHLAA----KYGNTSAVQKLISHGADI  403 (929)
T ss_pred             chhhhHHH----HhccHHHHHHHHHcCCce
Confidence            99999996    458999999999999975

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.98  E-value=5.3e-32  Score=268.10  Aligned_cols=219  Identities=26%  Similarity=0.402  Sum_probs=192.0

Q ss_pred             cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccC---CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc---------
Q 012836            2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILH---TPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF---------   69 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------   69 (455)
                      ++.+.++++++|+|+++|..+.++.++.+++..-.   ...+..+.||||.|+..|+.++++.+|+.+...         
T Consensus       181 ~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~  260 (929)
T KOG0510|consen  181 CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQ  260 (929)
T ss_pred             CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHH
Confidence            46788999999999999999999999995543211   122335899999999999999999999987532         


Q ss_pred             -----hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHH-hcCcccccccc
Q 012836           70 -----AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS-AYGECAEDVSV  143 (455)
Q Consensus        70 -----~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~  143 (455)
                           ++..|.+|.||||+||+.|++++++.|+..|+++ +.++.++.||||.||.+|+.+.++.||+ ..-...+..|.
T Consensus       261 q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~  339 (929)
T KOG0510|consen  261 QEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDL  339 (929)
T ss_pred             HHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccc
Confidence                 3456889999999999999999999999999999 8899999999999999999999999999 43456678889


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCC
Q 012836          144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG  223 (455)
Q Consensus       144 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g  223 (455)
                      .|.||||.|+++|+..+++.|+++|+....   ....|.+|+||||+|+..|+..++++|+.+|+      ++..+|+.|
T Consensus       340 ~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~---~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga------~I~~~n~~g  410 (929)
T KOG0510|consen  340 HGMTPLHLAAKSGHDRVVQLLLNKGALFLN---MSEADSDGNTALHLAAKYGNTSAVQKLISHGA------DIGVKNKKG  410 (929)
T ss_pred             cCCCchhhhhhcCHHHHHHHHHhcChhhhc---ccccccCCchhhhHHHHhccHHHHHHHHHcCC------ceeeccccc
Confidence            999999999999999999999999998621   01559999999999999999999999999999      899999999


Q ss_pred             CCHHHHH
Q 012836          224 LTALDVL  230 (455)
Q Consensus       224 ~t~l~~a  230 (455)
                      .+++|+.
T Consensus       411 ~SA~~~~  417 (929)
T KOG0510|consen  411 KSAFDTR  417 (929)
T ss_pred             ccccccc
Confidence            9999953

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.98  E-value=6.2e-31  Score=279.00  Aligned_cols=230  Identities=20%  Similarity=0.218  Sum_probs=157.5

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc-------------
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF-------------   69 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------------   69 (455)
                      ..+..|.||||.|+..|+.++++.|++.+.+.....  ..|.||||.|+..|+.++++.|++.+++.             
T Consensus       173 ~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~--~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~  250 (682)
T PHA02876        173 AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIA--LDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRN  250 (682)
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHc
Confidence            456678899999999999999999998887654332  24677777777777777777766554321             


Q ss_pred             ---------------hhhhcCCCCcHHHHHHHcCCH-HHHHHHHhcCccccccCCCCCCCHHHHHHHhC-CHHHHHHHHH
Q 012836           70 ---------------AKEVNQDGFSPMHMASANGQI-DVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG-RVDVVSEMLS  132 (455)
Q Consensus        70 ---------------~~~~~~~g~tpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~  132 (455)
                                     .+..|..|.||||+|+..|+. +++++|++.++++ +.+|.+|.||||+|+..| +.++++.|+.
T Consensus       251 ~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~  329 (682)
T PHA02876        251 EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIM  329 (682)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence                           233456677888888777775 5777777777776 667777777777777777 4677777666


Q ss_pred             hcCccccccccCCCcHHHHHHHc-CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCC
Q 012836          133 AYGECAEDVSVQRETVLHLAVKN-NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS  211 (455)
Q Consensus       133 ~~~~~~~~~~~~g~t~Lh~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  211 (455)
                      . |.+++..|..|.||||+|+.. ++.+++++|++.|+++      +.+|..|+||||+|+..|+.+++++|+++|+   
T Consensus       330 ~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi------n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ga---  399 (682)
T PHA02876        330 L-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV------NARDYCDKTPIHYAAVRNNVVIINTLLDYGA---  399 (682)
T ss_pred             c-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC---
Confidence            5 677777777777777777764 3566777777776665      6777777777777777777777777777776   


Q ss_pred             CCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcc
Q 012836          212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       212 ~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga  251 (455)
                         +++..+..|.||||+|+..   .+...++++|++.|+
T Consensus       400 ---d~~~~~~~g~T~Lh~A~~~---~~~~~~vk~Ll~~ga  433 (682)
T PHA02876        400 ---DIEALSQKIGTALHFALCG---TNPYMSVKTLIDRGA  433 (682)
T ss_pred             ---CccccCCCCCchHHHHHHc---CCHHHHHHHHHhCCC
Confidence               4555555555555555321   122344555555555

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=4e-31  Score=269.09  Aligned_cols=226  Identities=20%  Similarity=0.225  Sum_probs=193.4

Q ss_pred             cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-----------------
Q 012836            2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIR-----------------   64 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-----------------   64 (455)
                      +..+..|.||||.||..|+.+.++.|++.......    ..+.+|||.|+..|+.++++.|+.                 
T Consensus        64 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~  139 (477)
T PHA02878         64 NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKK  139 (477)
T ss_pred             CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhc
Confidence            45678899999999999999999999987543322    247899999999988776655554                 


Q ss_pred             ----------------cCCcchhhhcCC-CCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHH
Q 012836           65 ----------------LKPDFAKEVNQD-GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVV  127 (455)
Q Consensus        65 ----------------~~~~~~~~~~~~-g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v  127 (455)
                                      ++++ ++..+.. |.||||+|+..|+.+++++|++.|+++ +.+|..|.||||.|+..|+.+++
T Consensus       140 ~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv  217 (477)
T PHA02878        140 SKDDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIV  217 (477)
T ss_pred             cchhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHH
Confidence                            4444 3455666 999999999999999999999999998 88999999999999999999999


Q ss_pred             HHHHHhcCccccccccCCCcHHHHHHHc-CCHHHHHHHHHHhhhhcccccccccCC-CCCcHHHHHHhcCChHHHHHHHh
Q 012836          128 SEMLSAYGECAEDVSVQRETVLHLAVKN-NQFEVVRALVDWIRDVKKENILNMKDK-QGNTALHLATWKRECQVVELLLS  205 (455)
Q Consensus       128 ~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~  205 (455)
                      +.|++. |.+++..|..|+||||+|+.. ++.+++++|+++|+++      |.++. .|+||||+|  .++.+++++|++
T Consensus       218 ~~Ll~~-ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv------n~~~~~~g~TpLh~A--~~~~~~v~~Ll~  288 (477)
T PHA02878        218 HILLEN-GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV------NAKSYILGLTALHSS--IKSERKLKLLLE  288 (477)
T ss_pred             HHHHHc-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC------CccCCCCCCCHHHHH--ccCHHHHHHHHH
Confidence            999987 899999999999999999976 6899999999999987      77775 899999999  578899999999


Q ss_pred             cCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcc
Q 012836          206 HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       206 ~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga  251 (455)
                      +|+      +++.+|..|.||||+|+..   ....++.++|...+.
T Consensus       289 ~ga------din~~d~~g~TpL~~A~~~---~~~~~~~~~li~~~~  325 (477)
T PHA02878        289 YGA------DINSLNSYKLTPLSSAVKQ---YLCINIGRILISNIC  325 (477)
T ss_pred             CCC------CCCCcCCCCCCHHHHHHHH---cCccchHHHHHHHHH
Confidence            999      8999999999999999752   234567777776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=9e-31  Score=267.38  Aligned_cols=231  Identities=18%  Similarity=0.214  Sum_probs=196.8

Q ss_pred             cccCHHHHHHHHcC--CHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcC------CHHHHHHHHHcCCcchhhhcCCC
Q 012836            6 TRMDRRLIAAALTG--DVQTLQQLFVENPLILHTPAFASAGNPLHVASAYG------HVDFVKEIIRLKPDFAKEVNQDG   77 (455)
Q Consensus         6 ~~~~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~g   77 (455)
                      ..|.++||.++..+  +.++++.|++.|.+++...   .+.||||.|+..+      +.++++.|+++|++ ++.+|..|
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~---~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g  108 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG---YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD-INLKTFNG  108 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC---CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC-CCCCCCCC
Confidence            35778887766543  6899999999998876542   3789999998754      46899999999998 57789999


Q ss_pred             CcHHHHHHHc---CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh--CCHHHHHHHHHhcCccccc-cccCCCcHHHH
Q 012836           78 FSPMHMASAN---GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK--GRVDVVSEMLSAYGECAED-VSVQRETVLHL  151 (455)
Q Consensus        78 ~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~-~~~~g~t~Lh~  151 (455)
                      .||||.|+..   |+.+++++|+++|+++.+.+|..|+||||+|+..  ++.+++++|+++ |.+++. .+..|.||||+
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~-Gadi~~~~~~~g~tpL~~  187 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF-GVNLFEKTSLYGLTPMNI  187 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCccccccccCCChHHH
Confidence            9999988765   6899999999999998567899999999998764  689999999997 888887 67899999999


Q ss_pred             HHHcC----CHHHHHHHHHHhhhhcccc--------------------------------cccccCCCCCcHHHHHHhcC
Q 012836          152 AVKNN----QFEVVRALVDWIRDVKKEN--------------------------------ILNMKDKQGNTALHLATWKR  195 (455)
Q Consensus       152 A~~~~----~~~~v~~Ll~~g~~~~~~~--------------------------------~~~~~d~~G~T~Lh~A~~~~  195 (455)
                      |++.+    +.+++++|+++|+++....                                .+|.+|..|+||||+|+..+
T Consensus       188 a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~  267 (494)
T PHA02989        188 YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVD  267 (494)
T ss_pred             HHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhc
Confidence            98765    8999999999998764221                                25788999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcc
Q 012836          196 ECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       196 ~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga  251 (455)
                      +.+++++|+++|+      +++.+|..|.||||+|+.    .++.++++.|++.+.
T Consensus       268 ~~~~v~~LL~~Ga------din~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~p  313 (494)
T PHA02989        268 NYEAFNYLLKLGD------DIYNVSKDGDTVLTYAIK----HGNIDMLNRILQLKP  313 (494)
T ss_pred             CHHHHHHHHHcCC------CccccCCCCCCHHHHHHH----cCCHHHHHHHHhcCC
Confidence            9999999999999      899999999999999974    478899999988654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.4e-30  Score=262.83  Aligned_cols=231  Identities=16%  Similarity=0.166  Sum_probs=197.7

Q ss_pred             cCHHHHHHHH--cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHc-----CCHHHHHHHHHcCCcchhhhcCCCCcH
Q 012836            8 MDRRLIAAAL--TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAY-----GHVDFVKEIIRLKPDFAKEVNQDGFSP   80 (455)
Q Consensus         8 ~~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~tp   80 (455)
                      +.|+++.+..  .++.++++.|++.|.++....  ..|.||||.|+..     ++.++++.|+++|++ ++..|..|.||
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d--~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad-iN~~d~~G~Tp  112 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLD--NEYSTPLCTILSNIKDYKHMLDIVKILIENGAD-INKKNSDGETP  112 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCC--CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC-CCCCCCCcCcH
Confidence            4566654444  448899999999998775443  3599999998864     678999999999998 67889999999


Q ss_pred             HHHHHHcC---CHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC---HHHHHHHHHhcCccccccc-cCCCcHHHHHH
Q 012836           81 MHMASANG---QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR---VDVVSEMLSAYGECAEDVS-VQRETVLHLAV  153 (455)
Q Consensus        81 Lh~Aa~~g---~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~  153 (455)
                      ||+|+..+   +.+++++|+++|+++ +.+|.+|.||||+|+..|+   .++++.|+++ |.+++..+ ..|.||||.++
T Consensus       113 Lh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~-gadin~~~~~~~~t~Lh~~~  190 (489)
T PHA02798        113 LYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK-GVDINTHNNKEKYDTLHCYF  190 (489)
T ss_pred             HHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHh-CCCcccccCcCCCcHHHHHH
Confidence            99999886   789999999999998 8899999999999999998   9999999998 88888774 57899999987


Q ss_pred             Hc----CCHHHHHHHHHHhhhhccc---------------------------------ccccccCCCCCcHHHHHHhcCC
Q 012836          154 KN----NQFEVVRALVDWIRDVKKE---------------------------------NILNMKDKQGNTALHLATWKRE  196 (455)
Q Consensus       154 ~~----~~~~~v~~Ll~~g~~~~~~---------------------------------~~~~~~d~~G~T~Lh~A~~~~~  196 (455)
                      ..    ++.+++++|+++|+++...                                 ..+|.+|..|+||||+|+..++
T Consensus       191 ~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~  270 (489)
T PHA02798        191 KYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN  270 (489)
T ss_pred             HhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc
Confidence            65    4799999999998765321                                 1367889999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836          197 CQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       197 ~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~  253 (455)
                      .+++++|+++|+      +++.+|..|+|||++|+.    .+..++++.|++.++..
T Consensus       271 ~~~v~~LL~~GA------din~~d~~G~TpL~~A~~----~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        271 RKIFEYLLQLGG------DINIITELGNTCLFTAFE----NESKFIFNSILNKKPNK  317 (489)
T ss_pred             HHHHHHHHHcCC------cccccCCCCCcHHHHHHH----cCcHHHHHHHHccCCCH
Confidence            999999999999      899999999999999964    57889999999988754

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.1e-30  Score=272.79  Aligned_cols=227  Identities=26%  Similarity=0.367  Sum_probs=171.7

Q ss_pred             cCcccCHHHHHHHHcCCH-HHHHHHHhcCCcccCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836            4 YSTRMDRRLIAAALTGDV-QTLQQLFVENPLILHTPAFASAGNPLHVASAYG-HVDFVKEIIRLKPDFAKEVNQDGFSPM   81 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpL   81 (455)
                      .+..|.||||.|+..|+. ++++.|++.+.+....  +..|.||||+|+..| +.++++.|++.+.+ .+..|..|.|||
T Consensus       269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~--d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g~TpL  345 (682)
T PHA02876        269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK--NIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPL  345 (682)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccCCCcHH
Confidence            455677888888888876 4666666666554332  234788888888887 47888888887776 466677888888


Q ss_pred             HHHHHc-CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCC-HH
Q 012836           82 HMASAN-GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ-FE  159 (455)
Q Consensus        82 h~Aa~~-g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~  159 (455)
                      |+|+.. ++.++++.|++.++++ +.+|..|.||||+|+..|+.++++.|++. |.+++..+..|.||||+|+..++ ..
T Consensus       346 h~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~-gad~~~~~~~g~T~Lh~A~~~~~~~~  423 (682)
T PHA02876        346 HQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVRNNVVIINTLLDY-GADIEALSQKIGTALHFALCGTNPYM  423 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCCchHHHHHHcCCHHH
Confidence            888774 4677888888888777 77788888888888888888888888876 77778788888888888877655 45


Q ss_pred             HHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcC-ChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcC
Q 012836          160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR-ECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG  238 (455)
Q Consensus       160 ~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~-~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~  238 (455)
                      ++++|++.|+++      |.+|.+|+||||+|+..+ +.+++++|++.|+      +++.+|..|.||+++|...     
T Consensus       424 ~vk~Ll~~gadi------n~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Ga------d~n~~d~~g~tpl~~a~~~-----  486 (682)
T PHA02876        424 SVKTLIDRGANV------NSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA------DVNAINIQNQYPLLIALEY-----  486 (682)
T ss_pred             HHHHHHhCCCCC------CcCCCCCChHHHHHHHhCCcHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHh-----
Confidence            678888877776      788888888888888765 5788888888887      7888888888888888642     


Q ss_pred             chhHHHHHHHhcccc
Q 012836          239 DREIEEIFWSAGAMR  253 (455)
Q Consensus       239 ~~~i~~~L~~~ga~~  253 (455)
                       .+++++|+..|+..
T Consensus       487 -~~~v~~Ll~~~a~~  500 (682)
T PHA02876        487 -HGIVNILLHYGAEL  500 (682)
T ss_pred             -CCHHHHHHHCCCCC
Confidence             24778888877743

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=221.60  Aligned_cols=172  Identities=18%  Similarity=0.284  Sum_probs=154.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcC--CHHHHHHHHhcCccccccCC-CCCCCHHHHH
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANG--QIDVVRGLMKFDQKLCHLQG-PERKTPLHFA  118 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A  118 (455)
                      .+.||||.|+..|+.++|+.|++.    .+..|..|.||||+|+..+  +.+++++|+++++++ +.++ ..|.||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHH
Confidence            478999999999999999999975    3456889999999999855  899999999999998 6665 5899999998


Q ss_pred             HHh---CCHHHHHHHHHhcCccccccccCCCcHHHHHHH--cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHH-HH
Q 012836          119 AIK---GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK--NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHL-AT  192 (455)
Q Consensus       119 ~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~-A~  192 (455)
                      +..   ++.++++.|+++ |.+++..|..|+||||+|+.  .++.+++++|+++|+++      +.+|.+|+||||. |+
T Consensus        95 ~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi------n~~d~~g~t~Lh~~a~  167 (209)
T PHA02859         95 LSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF------LNKDFDNNNILYSYIL  167 (209)
T ss_pred             HHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc------ccccCCCCcHHHHHHH
Confidence            864   479999999987 99999999999999999986  46899999999999887      8999999999995 56


Q ss_pred             hcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          193 WKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       193 ~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      ..++.+++++|+++|+      +++.+|..|.||||+|.
T Consensus       168 ~~~~~~iv~~Ll~~Ga------di~~~d~~g~tpl~la~  200 (209)
T PHA02859        168 FHSDKKIFDFLTSLGI------DINETNKSGYNCYDLIK  200 (209)
T ss_pred             hcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHh
Confidence            7789999999999998      89999999999999995

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=5.8e-29  Score=242.33  Aligned_cols=210  Identities=27%  Similarity=0.383  Sum_probs=182.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG  122 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  122 (455)
                      -.+.++.|++.|..+-|+.|++.....++..|++|.|+||+||.+++.+++++|+++++++......-+.||||+|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            35678899999999999999999444478889999999999999999999999999999994444478899999999999


Q ss_pred             CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHH
Q 012836          123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL  202 (455)
Q Consensus       123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~  202 (455)
                      +..+++.|+++ |++++.+|.+|.|+||+|++.++.-.+-+++.+|+++      +.+|.+|+||||+|+.+|....++.
T Consensus       124 ~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~------d~~D~~grTpLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  124 HISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI------DLRDNNGRTPLMWAAYKGFALFVRR  196 (600)
T ss_pred             cHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC------CCcCCCCCCHHHHHHHhcccHHHHH
Confidence            99999999998 9999999999999999999999999999999998777      9999999999999999999988999


Q ss_pred             HHhcCCCCCCCccccccC-CCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccccc
Q 012836          203 LLSHGANASGGLEVNATN-HSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIS  278 (455)
Q Consensus       203 Ll~~ga~~~~~v~~~~~n-~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      |++-|+      .++.+| ++|+||||.|+.    .++.+.+.++++.|+.         .+..+.+|++|.+...+
T Consensus       197 LL~f~a------~~~~~d~~~g~TpLHwa~~----~gN~~~v~Ll~~g~~~---------~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  197 LLKFGA------SLLLTDDNHGNTPLHWAVV----GGNLTAVKLLLEGGAD---------LDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             HHHhcc------cccccccccCCchHHHHHh----cCCcceEehhhhcCCc---------ccccccCCCCHHHHHHH
Confidence            999998      788887 999999999964    4777777766666663         23444557777554433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.8e-28  Score=246.24  Aligned_cols=240  Identities=17%  Similarity=0.192  Sum_probs=197.0

Q ss_pred             HHHHHH---cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHc--CCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH
Q 012836           12 LIAAAL---TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAY--GHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA   86 (455)
Q Consensus        12 L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   86 (455)
                      ||.-+.   ..+.+.++.|++.|.+++..   ..|.||||.++..  ++.++|+.|+++|+++ +..+ .+.||||.|+.
T Consensus         4 l~~y~~~~~~~~~~~v~~LL~~GadvN~~---~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv-n~~~-~~~tpL~~a~~   78 (494)
T PHA02989          4 LYEYILYSDTVDKNALEFLLRTGFDVNEE---YRGNSILLLYLKRKDVKIKIVKLLIDNGADV-NYKG-YIETPLCAVLR   78 (494)
T ss_pred             HHHHHHcCCcCcHHHHHHHHHcCCCcccc---cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc-cCCC-CCCCcHHHHHh
Confidence            454444   47899999999999887654   2489999866554  3789999999999884 4444 57999999987


Q ss_pred             cC------CHHHHHHHHhcCccccccCCCCCCCHHHHHHHh---CCHHHHHHHHHhcCccc-cccccCCCcHHHHHHHc-
Q 012836           87 NG------QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK---GRVDVVSEMLSAYGECA-EDVSVQRETVLHLAVKN-  155 (455)
Q Consensus        87 ~g------~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~-~~~~~~g~t~Lh~A~~~-  155 (455)
                      ++      +.+++++|+++|+++ +.+|.+|.||||.|+..   |+.+++++|+++ |+++ +..|..|+||||+|+.. 
T Consensus        79 ~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~  156 (494)
T PHA02989         79 NREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESF  156 (494)
T ss_pred             ccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhc
Confidence            54      578999999999998 88999999999998765   679999999998 8999 78999999999998765 


Q ss_pred             -CCHHHHHHHHHHhhhhcccccccc-cCCCCCcHHHHHHhcC----ChHHHHHHHhcCCCCCC-----------------
Q 012836          156 -NQFEVVRALVDWIRDVKKENILNM-KDKQGNTALHLATWKR----ECQVVELLLSHGANASG-----------------  212 (455)
Q Consensus       156 -~~~~~v~~Ll~~g~~~~~~~~~~~-~d~~G~T~Lh~A~~~~----~~~iv~~Ll~~ga~~~~-----------------  212 (455)
                       ++.+++++|+++|+++      +. .|..|.||||+|+..+    +.+++++|+++|++.+.                 
T Consensus       157 ~~~~~iv~~Ll~~Gadi------~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~  230 (494)
T PHA02989        157 SVKKDVIKILLSFGVNL------FEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK  230 (494)
T ss_pred             cCCHHHHHHHHHcCCCc------cccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch
Confidence             5799999999999987      65 6889999999998764    89999999999986421                 


Q ss_pred             ---------------CccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          213 ---------------GLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       213 ---------------~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                                     +.++|.+|..|+||||+|+.    .++.+++++|+++|++.         +.++..|.+|+....
T Consensus       231 ~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~----~~~~~~v~~LL~~Gadi---------n~~d~~G~TpL~~A~  297 (494)
T PHA02989        231 ILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAK----VDNYEAFNYLLKLGDDI---------YNVSKDGDTVLTYAI  297 (494)
T ss_pred             hhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHH----hcCHHHHHHHHHcCCCc---------cccCCCCCCHHHHHH
Confidence                           13567888999999999974    47889999999999954         344566777765443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=9.9e-29  Score=231.13  Aligned_cols=217  Identities=27%  Similarity=0.392  Sum_probs=173.9

Q ss_pred             HHHHHcCCHHHHHHHHhcCCcc--cC-CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchh--------hhcCCCCcHH
Q 012836           13 IAAALTGDVQTLQQLFVENPLI--LH-TPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK--------EVNQDGFSPM   81 (455)
Q Consensus        13 ~~A~~~g~~~~v~~Ll~~~~~~--~~-~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~--------~~~~~g~tpL   81 (455)
                      ..|++.|+...+..|+.+....  .. ......|.|||.+||++||.++|++|+++....+.        --..+|-+||
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence            4788888888888888654321  10 11122478999999999999999999985432111        1245678899


Q ss_pred             HHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHH
Q 012836           82 HMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV  161 (455)
Q Consensus        82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  161 (455)
                      -.|+..||.++|+.|+++++++ +....-..|||..||.-|+.|++++|+++ +.+++..|+.|.|.||+||..|+.+|+
T Consensus        89 WaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~-gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEH-GADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHc-CCCCcccccCCCeeEEeeeccCchHHH
Confidence            9999999999999999999877 65666677999999999999999999977 889999999999999999999999999


Q ss_pred             HHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchh
Q 012836          162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDRE  241 (455)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~  241 (455)
                      ++|++.|+|+      |.++..|||+||.++..|+.+++++|+++|+       .-.+|..|.|||-.|.    ..+..+
T Consensus       167 qyLle~gADv------n~ks~kGNTALH~caEsG~vdivq~Ll~~ga-------~i~~d~~GmtPL~~Aa----~tG~~~  229 (615)
T KOG0508|consen  167 QYLLEQGADV------NAKSYKGNTALHDCAESGSVDIVQLLLKHGA-------KIDVDGHGMTPLLLAA----VTGHTD  229 (615)
T ss_pred             HHHHHhCCCc------chhcccCchHHHhhhhcccHHHHHHHHhCCc-------eeeecCCCCchHHHHh----hhcchH
Confidence            9999999887      8999999999999999999999999999987       2245666999998883    457888


Q ss_pred             HHHHHHH
Q 012836          242 IEEIFWS  248 (455)
Q Consensus       242 i~~~L~~  248 (455)
                      +++.|++
T Consensus       230 iVe~L~~  236 (615)
T KOG0508|consen  230 IVERLLQ  236 (615)
T ss_pred             HHHHHhc
Confidence            8888875

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.4e-27  Score=246.23  Aligned_cols=234  Identities=17%  Similarity=0.129  Sum_probs=185.9

Q ss_pred             ccCcccCHHHHHHHHc---CCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHH----HHHHHHHcCCcchhhhcC
Q 012836            3 SYSTRMDRRLIAAALT---GDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVD----FVKEIIRLKPDFAKEVNQ   75 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~~~   75 (455)
                      ..|+.|.|+||.|+..   |+.++++.|++.+.+....  +..|.||||.|+..|+.+    +++.|++.+.. .+..+ 
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~--~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~~-  102 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK--NWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIND-  102 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc--CCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCCC-
Confidence            3477899999997655   8899999999999877543  346999999999999954    55777776432 12222 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH--HhCCHHHHHHHHHhcCcccccccc---CC-----
Q 012836           76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA--IKGRVDVVSEMLSAYGECAEDVSV---QR-----  145 (455)
Q Consensus        76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~---~g-----  145 (455)
                       ..+++|.|+.+|+.++|++|+++|+++ +.+|.+|+||||.|+  ..|+.+++++|+++ |++++..|.   .|     
T Consensus       103 -~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~-Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        103 -FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIEN-GCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             -cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHc-CCCcccccccccccccccc
Confidence             347788899999999999999999999 889999999999654  57899999999998 888875543   23     


Q ss_pred             ------CcHHHHHHH-----------cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCCh--HHHHHHHhc
Q 012836          146 ------ETVLHLAVK-----------NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKREC--QVVELLLSH  206 (455)
Q Consensus       146 ------~t~Lh~A~~-----------~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~--~iv~~Ll~~  206 (455)
                            .||||+|+.           .++.+++++|+++|+++      |.+|.+|+||||+|+..|+.  +++++|++ 
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv------n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-  252 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP------SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-  252 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc------ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-
Confidence                  599999986           45899999999999998      99999999999999999985  79999975 


Q ss_pred             CCCCCCCccccccCCCCCCHHHHHhhCC-----CCcCchhHHHHHHHhccc
Q 012836          207 GANASGGLEVNATNHSGLTALDVLLSFP-----SEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       207 ga~~~~~v~~~~~n~~g~t~l~~a~~~~-----~~~~~~~i~~~L~~~ga~  252 (455)
                      |++...  .....|..|.+|++++....     ....+.+++++|+++|+.
T Consensus       253 g~d~~~--~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        253 GIDNTA--YSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             CCcccc--cccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            773110  11246667888888886321     113478999999999984

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.8e-28  Score=229.44  Aligned_cols=193  Identities=23%  Similarity=0.314  Sum_probs=173.1

Q ss_pred             cCcccCHHHHHHHHcCCHHHHHHHHhcCCcc-------cCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCC
Q 012836            4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLI-------LHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQD   76 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   76 (455)
                      ....|.|||..|+++|+.++|++|+++....       ......-.|-+||-.|+..||.++|+.|++++.+ ++.....
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~-VN~tT~T  116 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS-VNDTTRT  116 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc-ccccccc
Confidence            4567789999999999999999999953221       1111222488999999999999999999999977 5666777


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcC
Q 012836           77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN  156 (455)
Q Consensus        77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~  156 (455)
                      ..|||--||.-|+.++|++|+++++++ ++.|..|.|+||+||..||.+++++|++. |++++.++.+|+|+||.+++.|
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~-gADvn~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQ-GADVNAKSYKGNTALHDCAESG  194 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHh-CCCcchhcccCchHHHhhhhcc
Confidence            889999999999999999999999999 99999999999999999999999999998 9999999999999999999999


Q ss_pred             CHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhc
Q 012836          157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH  206 (455)
Q Consensus       157 ~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  206 (455)
                      +.+++++|+++|+.+       .+|..|.|||..|+..|+.++++.|++.
T Consensus       195 ~vdivq~Ll~~ga~i-------~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKI-------DVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             cHHHHHHHHhCCcee-------eecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            999999999999875       5788899999999999999999999973

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.2e-27  Score=212.93  Aligned_cols=177  Identities=14%  Similarity=0.172  Sum_probs=154.2

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCcchhhhc-CCCCcHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYG--HVDFVKEIIRLKPDFAKEVN-QDGFSPM   81 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~g~tpL   81 (455)
                      .++..+|||.|+..|+.+.|+.|++...    . .+..|.||||+|+..+  +.+++++|+++++++ +.++ ..|.|||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~n----~-~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpL   91 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFVN----D-CNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSAL   91 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhhh----c-cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHH
Confidence            4567899999999999999999997521    1 2345999999999854  899999999999985 5554 5899999


Q ss_pred             HHHHHc---CCHHHHHHHHhcCccccccCCCCCCCHHHHHHH--hCCHHHHHHHHHhcCccccccccCCCcHHHH-HHHc
Q 012836           82 HMASAN---GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI--KGRVDVVSEMLSAYGECAEDVSVQRETVLHL-AVKN  155 (455)
Q Consensus        82 h~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~-A~~~  155 (455)
                      |+|+..   ++.+++++|+++++++ +.+|.+|.||||.|+.  .++.+++++|++. +.+++.+|.+|.||||. |+..
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~-gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDS-GVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCcccccCCCCcHHHHHHHhc
Confidence            998764   4799999999999998 8899999999999986  4689999999987 89999999999999996 5678


Q ss_pred             CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcC
Q 012836          156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR  195 (455)
Q Consensus       156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~  195 (455)
                      ++.+++++|+++|+++      +.+|..|.||||+|...+
T Consensus       170 ~~~~iv~~Ll~~Gadi------~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLGIDI------NETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHhhhh
Confidence            8999999999999987      899999999999998653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=7.2e-27  Score=238.39  Aligned_cols=197  Identities=16%  Similarity=0.191  Sum_probs=171.6

Q ss_pred             cccCcccCHHHHHHHHc-----CCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcC---CHHHHHHHHHcCCcchhhh
Q 012836            2 TSYSTRMDRRLIAAALT-----GDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYG---HVDFVKEIIRLKPDFAKEV   73 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~   73 (455)
                      +..+..|.||||.|+..     +..++++.|++.+.++....  ..|.||||+|+..|   +.+++++|+++|++ ++..
T Consensus        65 n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d--~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~  141 (489)
T PHA02798         65 NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKN--SDGETPLYCLLSNGYINNLEILLFMIENGAD-TTLL  141 (489)
T ss_pred             CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCC--CCcCcHHHHHHHcCCcChHHHHHHHHHcCCC-cccc
Confidence            45678899999999864     67999999999998765443  35999999999976   78999999999988 5788


Q ss_pred             cCCCCcHHHHHHHcCC---HHHHHHHHhcCccccccCCCCCCCHHHHHHHh----CCHHHHHHHHHhcCc----------
Q 012836           74 NQDGFSPMHMASANGQ---IDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK----GRVDVVSEMLSAYGE----------  136 (455)
Q Consensus        74 ~~~g~tpLh~Aa~~g~---~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~----g~~~~v~~Ll~~~~~----------  136 (455)
                      |..|.||||+|+..|+   .+++++|++.|+++....+..|.||||.++..    ++.+++++|+++ |.          
T Consensus       142 d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~-Ga~i~~~~~~~~  220 (489)
T PHA02798        142 DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN-GFIINKENKSHK  220 (489)
T ss_pred             CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC-CCCcccCCcccc
Confidence            9999999999999998   99999999999998333356789999998764    478888888875 32          


Q ss_pred             -----------------------------cccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836          137 -----------------------------CAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA  187 (455)
Q Consensus       137 -----------------------------~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~  187 (455)
                                                   +++..|..|+||||+|+..|+.+++++|+++|+++      |.+|..|+||
T Consensus       221 ~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi------n~~d~~G~Tp  294 (489)
T PHA02798        221 KKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI------NIITELGNTC  294 (489)
T ss_pred             chHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc------cccCCCCCcH
Confidence                                         34556778999999999999999999999999998      9999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCC
Q 012836          188 LHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       188 Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      ||+|+..++.++++.|+++++
T Consensus       295 L~~A~~~~~~~iv~~lL~~~~  315 (489)
T PHA02798        295 LFTAFENESKFIFNSILNKKP  315 (489)
T ss_pred             HHHHHHcCcHHHHHHHHccCC
Confidence            999999999999999999998

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.6e-26  Score=236.71  Aligned_cols=210  Identities=17%  Similarity=0.181  Sum_probs=169.2

Q ss_pred             HHHHHHHHhcCCcccCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHH----HH
Q 012836           21 VQTLQQLFVENPLILHTPAFASAGNPLHVASAY---GHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQID----VV   93 (455)
Q Consensus        21 ~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~----iv   93 (455)
                      ++.+++|+.++... .. .+..|+||||+|+..   |+.++|+.|++.+.+. +..+..|+||||+|+..|+.+    ++
T Consensus        12 ~~~~~~l~~~~~~~-~~-~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~   88 (661)
T PHA02917         12 LDELKQMLRDRDPN-DT-RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIA   88 (661)
T ss_pred             HHHHHHHHhccCcc-cc-cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHH
Confidence            57889999755444 22 234699999998665   8899999999999884 667999999999999999854    56


Q ss_pred             HHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHH--HcCCHHHHHHHHHHhhhh
Q 012836           94 RGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAV--KNNQFEVVRALVDWIRDV  171 (455)
Q Consensus        94 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~v~~Ll~~g~~~  171 (455)
                      +.|++.+... +..+  ..+++|.|+..|+.+++++|+++ |++++..|.+|+||||.|+  ..|+.+++++|+++|+++
T Consensus        89 ~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v  164 (661)
T PHA02917         89 MALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV  164 (661)
T ss_pred             HHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc
Confidence            7888765432 3333  34778889999999999999988 9999999999999999654  578999999999999987


Q ss_pred             cccccccccC---CCC-----------CcHHHHHHh-----------cCChHHHHHHHhcCCCCCCCccccccCCCCCCH
Q 012836          172 KKENILNMKD---KQG-----------NTALHLATW-----------KRECQVVELLLSHGANASGGLEVNATNHSGLTA  226 (455)
Q Consensus       172 ~~~~~~~~~d---~~G-----------~T~Lh~A~~-----------~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~  226 (455)
                            |.+|   ..|           .||||+|+.           .++.+++++|+++|+      +++.+|.+|.||
T Consensus       165 ------n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga------dvn~~d~~G~Tp  232 (661)
T PHA02917        165 ------LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI------KPSSIDKNYCTA  232 (661)
T ss_pred             ------cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC------CcccCCCCCCcH
Confidence                  4433   233           699999986           468899999999999      899999999999


Q ss_pred             HHHHhhCCCCcCchhHHHHHHHhccc
Q 012836          227 LDVLLSFPSEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       227 l~~a~~~~~~~~~~~i~~~L~~~ga~  252 (455)
                      ||+|+...  ....+++++|.+ |+.
T Consensus       233 Lh~A~~~g--~~~~eivk~Li~-g~d  255 (661)
T PHA02917        233 LQYYIKSS--HIDIDIVKLLMK-GID  255 (661)
T ss_pred             HHHHHHcC--CCcHHHHHHHHh-CCc
Confidence            99997541  223589999975 764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=3e-27  Score=248.48  Aligned_cols=229  Identities=30%  Similarity=0.395  Sum_probs=166.0

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc---------------
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF---------------   69 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------------   69 (455)
                      .+.+.+++|.|+.+|..+.++.++.++......  ...|.||||.|+..++.++|+.+++++.+.               
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~--gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGADPNSA--GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCCcccC--CCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhh
Confidence            457788899999999999998888877653221  123444444444444444444444444431               


Q ss_pred             ------------------hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHH
Q 012836           70 ------------------AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEML  131 (455)
Q Consensus        70 ------------------~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  131 (455)
                                        .+..-..|.||||+|+..|+.++++.|++.++.. +...+.+.+++|.|...+...+++.++
T Consensus       449 ~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~  527 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILL  527 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHh
Confidence                              3444445555555555555555555555544333 344444555555555555555555555


Q ss_pred             HhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCC
Q 012836          132 SAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS  211 (455)
Q Consensus       132 ~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  211 (455)
                      ++ +..++..+.+|.||||+|+..|+.++|++|+++|++.      +.+|+.|+||||.|+..|+.+++++|+++|+   
T Consensus       528 ~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv------~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA---  597 (1143)
T KOG4177|consen  528 EH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV------NAKDKLGYTPLHQAAQQGHNDIAELLLKHGA---  597 (1143)
T ss_pred             hc-CCceehhcccccchHHHHHhcCCchHHHHhhhCCccc------cccCCCCCChhhHHHHcChHHHHHHHHHcCC---
Confidence            55 6777788889999999999999999999999999998      9999999999999999999999999999999   


Q ss_pred             CCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836          212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       212 ~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~  253 (455)
                         ++|..|.+|.|||++|..    .+..++++.|+..++.+
T Consensus       598 ---~vna~d~~g~TpL~iA~~----lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  598 ---SVNAADLDGFTPLHIAVR----LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             ---CCCcccccCcchhHHHHH----hcccchhhHHHhccCcc
Confidence               899999999999999964    48889999999999974

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=8.4e-26  Score=219.10  Aligned_cols=205  Identities=20%  Similarity=0.146  Sum_probs=171.7

Q ss_pred             HHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcch-----hhhcCCCCcHHHHHHH--cCCHHHHHHHH
Q 012836           25 QQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFA-----KEVNQDGFSPMHMASA--NGQIDVVRGLM   97 (455)
Q Consensus        25 ~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~~~~g~tpLh~Aa~--~g~~~iv~~Ll   97 (455)
                      ++++.++..+.....+  |     +|+..+..|+++.|+.++.+..     -..+..++|+||+++.  .|+.++|++|+
T Consensus        66 ~~~~~~~~~i~~~~~~--~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         66 DYFRIHRDNIDQYIVD--R-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHcCcchhhhhhh--h-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            4445555554443332  2     8999999999999999998732     1567889999999999  99999999999


Q ss_pred             hcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcc-cccc-----ccCCCcHHHHHHHcCCHHHHHHHHHHhhhh
Q 012836           98 KFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGEC-AEDV-----SVQRETVLHLAVKNNQFEVVRALVDWIRDV  171 (455)
Q Consensus        98 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-~~~~-----~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  171 (455)
                      ++|+++ +.  .++.||+|.|+..|+.+++++|+++ |.. .+..     +..+.+++|.|+..++.+++++|+++|+++
T Consensus       139 ~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI  214 (437)
T PHA02795        139 DHGAVI-YK--IECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI  214 (437)
T ss_pred             HCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc
Confidence            999998 44  3458999999999999999999998 543 2222     234779999999999999999999999987


Q ss_pred             cccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCC----CcCchhHHHHHH
Q 012836          172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPS----EAGDREIEEIFW  247 (455)
Q Consensus       172 ~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~----~~~~~~i~~~L~  247 (455)
                            |.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+....    ...+.+++++|+
T Consensus       215 ------N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA------dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL  282 (437)
T PHA02795        215 ------NQLDAGGRTLLYRAIYAGYIDLVSWLLENGA------NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILL  282 (437)
T ss_pred             ------CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHH
Confidence                  9999999999999999999999999999999      899999999999999975431    234679999999


Q ss_pred             Hhccc
Q 012836          248 SAGAM  252 (455)
Q Consensus       248 ~~ga~  252 (455)
                      ++|+.
T Consensus       283 ~~gad  287 (437)
T PHA02795        283 REPLS  287 (437)
T ss_pred             hCCCC
Confidence            99884

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=5.3e-27  Score=246.55  Aligned_cols=237  Identities=29%  Similarity=0.365  Sum_probs=207.0

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      .-+..+.++||.++..|+.+....+...++.....  ...+.||+|.|+..|..+.++.+++.+.+ .+..+..|.||||
T Consensus       336 aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a--~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh  412 (1143)
T KOG4177|consen  336 AARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQA--EEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLH  412 (1143)
T ss_pred             ccCcCCcccccHhhhhhhHHHHHHhhccccccCcc--cccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCcceee
Confidence            34567889999999999999777777766554333  23599999999999999999999999988 7888999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC-CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHH
Q 012836           83 MASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG-RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV  161 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  161 (455)
                      .|+..++.++++.+++++++. +.++..|.||+|+|+..| +.++...+++. +.+++.....|.||||.|+..|+.+++
T Consensus       413 ~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh~~~~  490 (1143)
T KOG4177|consen  413 VAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLLQY-GADPNAVSKQGFTPLHLAAQEGHTEVV  490 (1143)
T ss_pred             ehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHhhc-CCCcchhccccCcchhhhhccCCchHH
Confidence            999999999999999999998 889999999999999999 77777666664 999999999999999999999999999


Q ss_pred             HHHHHHhhhhcc---------------------------cccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCc
Q 012836          162 RALVDWIRDVKK---------------------------ENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGL  214 (455)
Q Consensus       162 ~~Ll~~g~~~~~---------------------------~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v  214 (455)
                      +.+++.++....                           +...+.++..|.||||.|+..|+.++|++|+++|+      
T Consensus       491 ~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gA------  564 (1143)
T KOG4177|consen  491 QLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGA------  564 (1143)
T ss_pred             HHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCc------
Confidence            999886532211                           22357788999999999999999999999999999      


Q ss_pred             cccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          215 EVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       215 ~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      +++.+++.|+||||.|+.    .++.+|+++|.++||...
T Consensus       565 dv~ak~~~G~TPLH~Aa~----~G~~~i~~LLlk~GA~vn  600 (1143)
T KOG4177|consen  565 DVNAKDKLGYTPLHQAAQ----QGHNDIAELLLKHGASVN  600 (1143)
T ss_pred             cccccCCCCCChhhHHHH----cChHHHHHHHHHcCCCCC
Confidence            899999999999999974    479999999999999654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.6e-25  Score=217.21  Aligned_cols=214  Identities=13%  Similarity=0.065  Sum_probs=178.2

Q ss_pred             HHHHcCCHHHHHHHHhcCCcccC----CCCCCCCChHHHHHHH--cCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836           14 AAALTGDVQTLQQLFVENPLILH----TPAFASAGNPLHVASA--YGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus        14 ~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      .|+..+..|.++.|+.++.....    -....+++|+||.|+.  .|+.++|++|+++|+++ +.  .++.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHHc
Confidence            78899999999999999987540    0123459999999999  99999999999999985 33  3568999999999


Q ss_pred             CCHHHHHHHHhcCccccccC-----CCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHH
Q 012836           88 GQIDVVRGLMKFDQKLCHLQ-----GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR  162 (455)
Q Consensus        88 g~~~iv~~Ll~~~~~~~~~~-----d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~  162 (455)
                      |+.+++++|+++|++..+..     +..+.+|+|.|+..++.+++++|+++ |++++..|..|+||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY-IEDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999997543332     23478999999999999999999997 8999999999999999999999999999


Q ss_pred             HHHHHhhhhcccccccccCCCCCcHHHHHHhcCC--------hHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCC
Q 012836          163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRE--------CQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP  234 (455)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~--------~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~  234 (455)
                      +|+++|+++      +.+|..|+||||+|+..|+        .+++++|+++|+      +++....   |.+..     
T Consensus       239 lLL~~GAdI------N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga------dI~~~~~---~~~~~-----  298 (437)
T PHA02795        239 WLLENGANV------NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL------SIDCIKL---AILNN-----  298 (437)
T ss_pred             HHHHCCCCC------CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC------CCCchhH---Hhhhc-----
Confidence            999999998      9999999999999999984        699999999998      5554332   22111     


Q ss_pred             CCcCchhHHHHHHHhccc
Q 012836          235 SEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       235 ~~~~~~~i~~~L~~~ga~  252 (455)
                       .....++++.+++++..
T Consensus       299 -~~~n~~~ik~lI~y~~~  315 (437)
T PHA02795        299 -TIENHDVIKLCIKYFMM  315 (437)
T ss_pred             -ccchHHHHHHHHHHHHh
Confidence             11256788888887763

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.9e-25  Score=238.97  Aligned_cols=228  Identities=20%  Similarity=0.186  Sum_probs=179.1

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHH-HHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLH-VASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA   84 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   84 (455)
                      +.++++|+.|++.||.+.++.++++.+.......+..|.|||| .|+..++.++++.|++.+.     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            4567899999999999999999998443333334446999999 8899999999999999876     477899999999


Q ss_pred             HHcC---CHHHHHHHHhcCccc---------cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc----------
Q 012836           85 SANG---QIDVVRGLMKFDQKL---------CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS----------  142 (455)
Q Consensus        85 a~~g---~~~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~----------  142 (455)
                      +..+   ...+++.+.+.+.+.         ....+..|.||||+|+..|+.++++.|+++ |++++..+          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCC
Confidence            8732   223444444443221         112235699999999999999999999997 77777532          


Q ss_pred             ----cCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcC---------ChHHHHHHHhcCCC
Q 012836          143 ----VQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR---------ECQVVELLLSHGAN  209 (455)
Q Consensus       143 ----~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~---------~~~iv~~Ll~~ga~  209 (455)
                          ..|+||||.|+..|+.+++++|+++|+++      +.+|..|+||||+|+..+         ...+.+++++.++.
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi------n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSEDPADI------LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK  242 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcCCcch------hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence                35899999999999999999999999877      899999999999999886         23466777777663


Q ss_pred             CCCCccc----cccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccc
Q 012836          210 ASGGLEV----NATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       210 ~~~~v~~----~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~  252 (455)
                      ..   +.    +..|++|.||||+|.    ..++.+++++|++.+..
T Consensus       243 ~~---~~~el~~i~N~~g~TPL~~A~----~~g~~~l~~lLL~~~~~  282 (743)
T TIGR00870       243 LR---DSKELEVILNHQGLTPLKLAA----KEGRIVLFRLKLAIKYK  282 (743)
T ss_pred             cC---ChHhhhhhcCCCCCCchhhhh----hcCCccHHHHHHHHHHh
Confidence            21   23    678999999999995    45788999999986554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.5e-24  Score=220.17  Aligned_cols=219  Identities=19%  Similarity=0.209  Sum_probs=178.1

Q ss_pred             HHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHH--HHHcCCHHHHHHHHH-----------------------------
Q 012836           16 ALTGDVQTLQQLFVENPLILHTPAFASAGNPLHV--ASAYGHVDFVKEIIR-----------------------------   64 (455)
Q Consensus        16 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~--A~~~g~~~~v~~Ll~-----------------------------   64 (455)
                      ..+++.|+++.|++.|.+++....  .|+||||+  |+..|+.|+|+.|++                             
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~--~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDE--GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence            456899999999999988765543  69999995  556678999999999                             


Q ss_pred             ---cCCcchhh--------------------hcCCCCc---------------------HHHHHHHcC---CHHHHHHHH
Q 012836           65 ---LKPDFAKE--------------------VNQDGFS---------------------PMHMASANG---QIDVVRGLM   97 (455)
Q Consensus        65 ---~~~~~~~~--------------------~~~~g~t---------------------pLh~Aa~~g---~~~iv~~Ll   97 (455)
                         .+.+. ..                    .+..|.+                     .||.=...+   +.+++++|+
T Consensus       288 ~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLI  366 (672)
T PHA02730        288 VTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCML  366 (672)
T ss_pred             cccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHH
Confidence               34332 12                    4556654                     566666655   689999999


Q ss_pred             hcCccccccCCCCCCCHHHHHHHhCC----HHHHHHHHHhcC-ccccccccCCCcHHHH---HHHcC---------CHHH
Q 012836           98 KFDQKLCHLQGPERKTPLHFAAIKGR----VDVVSEMLSAYG-ECAEDVSVQRETVLHL---AVKNN---------QFEV  160 (455)
Q Consensus        98 ~~~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~~-~~~~~~~~~g~t~Lh~---A~~~~---------~~~~  160 (455)
                      ++|+++ +.. ..|.||||+|+..++    .+++++|+++.+ .+++..|.+|+||||.   |...+         ..++
T Consensus       367 s~GAdI-N~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~i  444 (672)
T PHA02730        367 DNGATM-DKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDV  444 (672)
T ss_pred             HCCCCC-CcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHH
Confidence            999998 554 789999999999885    899999999833 2688899999999994   33232         2357


Q ss_pred             HHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCC-CCCCHHHHHhhCCCCcCc
Q 012836          161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNH-SGLTALDVLLSFPSEAGD  239 (455)
Q Consensus       161 v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~-~g~t~l~~a~~~~~~~~~  239 (455)
                      +++|+++|+++      |.+|..|+||||+|+..++.+++++|+++|+      +++.+|+ .|.||+|.|...  ..+.
T Consensus       445 vk~LIs~GADI------NakD~~G~TPLh~Aa~~~~~eive~LI~~GA------dIN~~d~~~g~TaL~~Aa~~--~~~~  510 (672)
T PHA02730        445 FDILSKYMDDI------DMIDNENKTLLYYAVDVNNIQFARRLLEYGA------SVNTTSRSIINTAIQKSSYR--RENK  510 (672)
T ss_pred             HHHHHhcccch------hccCCCCCCHHHHHHHhCCHHHHHHHHHCCC------CCCCCCCcCCcCHHHHHHHh--hcCc
Confidence            99999999997      9999999999999999999999999999999      8999997 599999999531  2357


Q ss_pred             hhHHHHHHHhcccc
Q 012836          240 REIEEIFWSAGAMR  253 (455)
Q Consensus       240 ~~i~~~L~~~ga~~  253 (455)
                      .+++++|+++|+..
T Consensus       511 ~eIv~~LLs~ga~i  524 (672)
T PHA02730        511 TKLVDLLLSYHPTL  524 (672)
T ss_pred             HHHHHHHHHcCCCH
Confidence            89999999999854

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.9e-25  Score=221.33  Aligned_cols=234  Identities=14%  Similarity=0.113  Sum_probs=173.8

Q ss_pred             CcccCHHHHHHHH-cCCHHHHHHHHhcCCcccC----------------------------------CCCCCCCChHHHH
Q 012836            5 STRMDRRLIAAAL-TGDVQTLQQLFVENPLILH----------------------------------TPAFASAGNPLHV   49 (455)
Q Consensus         5 ~~~~~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~----------------------------------~~~~~~g~t~Lh~   49 (455)
                      +..++++++.|+. .|+.|+++.|++.|.+...                                  ...+..|.||||+
T Consensus       102 ~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~  181 (631)
T PHA02792        102 KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYY  181 (631)
T ss_pred             cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHH
Confidence            4457788888865 5888888888888754110                                  0112238888888


Q ss_pred             HHHcC-------CHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcC--CHHHHHHHHhcCcc------------------
Q 012836           50 ASAYG-------HVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANG--QIDVVRGLMKFDQK------------------  102 (455)
Q Consensus        50 A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~------------------  102 (455)
                      |+..+       +.|+++.|++++.+ .+..|..|.||||+|+.+.  +.|+++.|++..-+                  
T Consensus       182 ~i~~~s~~~~~~~~~v~k~Li~~g~~-~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~  260 (631)
T PHA02792        182 YIITRSQDGYATSLDVINYLISHEKE-MRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRN  260 (631)
T ss_pred             HHhhCCcccccCCHHHHHHHHhCCCC-cCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhcc
Confidence            88888       78888888888887 4556778888888888888  66777766652100                  


Q ss_pred             ----c------------------------------------------------------------------cccCCCCCC
Q 012836          103 ----L------------------------------------------------------------------CHLQGPERK  112 (455)
Q Consensus       103 ----~------------------------------------------------------------------~~~~d~~g~  112 (455)
                          +                                                                  .........
T Consensus       261 ~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~  340 (631)
T PHA02792        261 KNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHI  340 (631)
T ss_pred             CccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcc
Confidence                0                                                                  000011244


Q ss_pred             CHHHHHHHhCCHHHHHHHHHhcCccccccccCC--CcHHHHHHHcCCH---HHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836          113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR--ETVLHLAVKNNQF---EVVRALVDWIRDVKKENILNMKDKQGNTA  187 (455)
Q Consensus       113 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g--~t~Lh~A~~~~~~---~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~  187 (455)
                      .++|.|+..|+.+++++|+++ |++++..|.+|  .||||+|+.....   +++++++++|+++      |.+|..|.||
T Consensus       341 n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI------N~kD~~G~TP  413 (631)
T PHA02792        341 NKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI------NKIDKHGRSI  413 (631)
T ss_pred             hHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc------ccccccCcch
Confidence            567788888899999888887 88888887764  5888887776654   3578888888887      9999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCC------cCchhHHHHHHHhccc
Q 012836          188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE------AGDREIEEIFWSAGAM  252 (455)
Q Consensus       188 Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~------~~~~~i~~~L~~~ga~  252 (455)
                      ||+|+..++.+++++|+++|+      +++.+|..|.|||++|......      ....+++++|+++|..
T Consensus       414 Lh~Aa~~~n~eivelLLs~GA------DIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        414 LYYCIESHSVSLVEWLIDNGA------DINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999      8999999999999999642111      2234578888887764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.4e-24  Score=233.83  Aligned_cols=172  Identities=22%  Similarity=0.343  Sum_probs=159.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG  122 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  122 (455)
                      +.++||.||..|+.++++.|++.+.+ ++..|..|.||||+||..|+.++++.|+++++++ +.+|.+|.||||.|+..|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAK  602 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhC
Confidence            67999999999999999999999988 5788999999999999999999999999999998 889999999999999999


Q ss_pred             CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHH
Q 012836          123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL  202 (455)
Q Consensus       123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~  202 (455)
                      +.++++.|+.. +...+  ...+.++||.|+.+|+.+++++|+++|+++      |.+|.+|+||||+|+..|+.+++++
T Consensus       603 ~~~iv~~L~~~-~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi------n~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        603 HHKIFRILYHF-ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNV------DSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             CHHHHHHHHhc-CcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            99999999975 44333  346779999999999999999999999987      9999999999999999999999999


Q ss_pred             HHhcCCCCCCCccccccCCCC-CCHHHHHh
Q 012836          203 LLSHGANASGGLEVNATNHSG-LTALDVLL  231 (455)
Q Consensus       203 Ll~~ga~~~~~v~~~~~n~~g-~t~l~~a~  231 (455)
                      |+++|+      +++..|..| .||++++.
T Consensus       674 Ll~~GA------dv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        674 LIMNGA------DVDKANTDDDFSPTELRE  697 (823)
T ss_pred             HHHcCC------CCCCCCCCCCCCHHHHHH
Confidence            999999      889999988 99998874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.4e-24  Score=218.61  Aligned_cols=194  Identities=13%  Similarity=0.087  Sum_probs=156.8

Q ss_pred             ccCcccCHHHHHHHHcC---CHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCcc-hhhhcCC
Q 012836            3 SYSTRMDRRLIAAALTG---DVQTLQQLFVENPLILHTPAFASAGNPLHVASAYG--HVDFVKEIIRLKPDF-AKEVNQD   76 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~-~~~~~~~   76 (455)
                      ..+..|+|+||.|+..|   +.++++.|+++|++....  +..|.||||+|+..|  +.|+|++|++.+.+. .+..+..
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~k--D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~  113 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCR--NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNI  113 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCccc--CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccccc
Confidence            45678999999999997   599999999999887655  346999999999977  799999999996531 2445667


Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHh-cCcccccc---CC-CCCCCHHHHHHHhCCHHHHHHHHHhcCcccc-------ccc
Q 012836           77 GFSPMHMASA--NGQIDVVRGLMK-FDQKLCHL---QG-PERKTPLHFAAIKGRVDVVSEMLSAYGECAE-------DVS  142 (455)
Q Consensus        77 g~tpLh~Aa~--~g~~~iv~~Ll~-~~~~~~~~---~d-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~-------~~~  142 (455)
                      +.+|||.++.  +++.+++++|++ .+.++...   ++ ..|.+|+++|...++.|++++|++. |++.+       ..+
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~-g~~v~g~~~~~~~~~  192 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS-ECYSTGYVFRSCMYD  192 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc-CCccccccccccccc
Confidence            8999999988  999999999996 44454222   12 3789999999999999999999998 77664       123


Q ss_pred             cC-CCcHHHHH------HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHH--HHhcCChHHHHHHHh
Q 012836          143 VQ-RETVLHLA------VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHL--ATWKRECQVVELLLS  205 (455)
Q Consensus       143 ~~-g~t~Lh~A------~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~--A~~~~~~~iv~~Ll~  205 (455)
                      .. +.|.||+.      ..+++.|++++|+++|+++      |.+|.+|.||||+  |...++.|++++|++
T Consensus       193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI------N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI------HGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            33 34566643      4557899999999999998      9999999999995  555677999999999

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=1.7e-25  Score=180.29  Aligned_cols=101  Identities=32%  Similarity=0.561  Sum_probs=84.7

Q ss_pred             CCCccchhhHHHHHHHHHHHHHhhhcccCCCccccccCCCCCCCCCCCCCCCCCCccccccCCCccchhhhhhhhHHHHH
Q 012836          299 RDSPGETLSALLVVAVLVATTTFQFGVNPPGGVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNSVGFSL  378 (455)
Q Consensus       299 ~~~~~~t~~s~~vVA~LIaTVtFaA~ft~PGG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~F~~~n~~af~~  378 (455)
                      +||+++++++++|||+|||||||||+||||||+||++.              ..|+|++. .++..|++|+++|++||++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~--------------~~G~~il~-~~~~~f~~F~~~nt~af~~   65 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD--------------DAGTPILA-KKPSAFKAFLISNTIAFFS   65 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc--------------CCCCchhc-cccchhhhHHHHHHHHHHH
Confidence            46889999999999999999999999999999999841              26999953 4555999999999999999


Q ss_pred             HHHHHHHHhcCC------------cchhHHHHHHHHHHHHHHHheeee
Q 012836          379 SIEMIRILTTNF------------PLQLELQLCFFAMYVTYTNAVITI  414 (455)
Q Consensus       379 S~~~i~~~~~~~------------~~~~~~~~~~~~m~~~~~~~~~~~  414 (455)
                      |++++++++++.            +....+++++.+|++||++|++++
T Consensus        66 S~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   66 SLAAIFLLISGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999998888533            111346888999999999998753

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=1.1e-24  Score=184.97  Aligned_cols=224  Identities=27%  Similarity=0.307  Sum_probs=197.3

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA   84 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   84 (455)
                      +..|+..+-.+.+.|+.+.+.....-+++.+...+.. |..++|.|+-+|+.+.+..++.++.. .++.+.-+++|+.++
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~-g~~~~~v~ap~~s~~k~sttltN~~r-gnevs~~p~s~~sls  136 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPE-GWSALLVAAPCGSVDKVSTTLTNGAR-GNEVSLMPWSPLSLS  136 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCch-hhhhhhhcCCCCCcceeeeeeccccc-CCccccccCChhhHH
Confidence            4456777778899999999999988888777666654 99999999999999999999998877 577888999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHH
Q 012836           85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL  164 (455)
Q Consensus        85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  164 (455)
                      +..-+.+.+..+.+.   ..+..|+.|.|||.+|+..|++++|++||+. |++++...+..+++|.+|++.|..+++++|
T Consensus       137 Vhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lL  212 (296)
T KOG0502|consen  137 VHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELL  212 (296)
T ss_pred             HHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHH
Confidence            998888888777653   3477999999999999999999999999997 999999999999999999999999999999


Q ss_pred             HHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHH
Q 012836          165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEE  244 (455)
Q Consensus       165 l~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~  244 (455)
                      ++++.++      |..|-+|.|||-+|++.++.++++.|++.|+      +++..+..|++++++|+..    ++. +++
T Consensus       213 L~r~vdV------NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA------d~t~e~dsGy~~mdlAVal----Gyr-~Vq  275 (296)
T KOG0502|consen  213 LTREVDV------NVYDWNGGTPLLYAVRGNHVKCVESLLNSGA------DVTQEDDSGYWIMDLAVAL----GYR-IVQ  275 (296)
T ss_pred             HhcCCCc------ceeccCCCceeeeeecCChHHHHHHHHhcCC------CcccccccCCcHHHHHHHh----hhH-HHH
Confidence            9988887      9999999999999999999999999999999      8999999999999999754    444 555


Q ss_pred             HHHHhcc
Q 012836          245 IFWSAGA  251 (455)
Q Consensus       245 ~L~~~ga  251 (455)
                      ..++..+
T Consensus       276 qvie~h~  282 (296)
T KOG0502|consen  276 QVIEKHA  282 (296)
T ss_pred             HHHHHHH
Confidence            5555444

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=212.34  Aligned_cols=223  Identities=28%  Similarity=0.342  Sum_probs=191.9

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA   84 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   84 (455)
                      |-.+.|.||.|+.+|+.+.++.|++..+......  ..|.+|||+|++.|+.|+++.++.+.. ..+..+..|.||||.|
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~ea~ldl~d--~kg~~plhlaaw~g~~e~vkmll~q~d-~~na~~~e~~tplhla  122 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD--TKGILPLHLAAWNGNLEIVKMLLLQTD-ILNAVNIENETPLHLA  122 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcchhhhhhhh--ccCcceEEehhhcCcchHHHHHHhccc-CCCcccccCcCccchh
Confidence            4468899999999999999999999877654443  459999999999999999999999984 4688899999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccc--------cccccCCCcHHHHHHHcC
Q 012836           85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECA--------EDVSVQRETVLHLAVKNN  156 (455)
Q Consensus        85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--------~~~~~~g~t~Lh~A~~~~  156 (455)
                      ++.||.+++.+|+.++++. ..+|+.+.|+|..|++.|..++++.|++. .-+.        ...+..+-+|||.|+++|
T Consensus       123 aqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  123 AQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             hhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcc
Confidence            9999999999999999998 78999999999999999999999999986 2111        123446779999999999


Q ss_pred             CHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCC
Q 012836          157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE  236 (455)
Q Consensus       157 ~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~  236 (455)
                      +.++++.|++.|.++      |...+.| |+||-|+..|..+++.+|++.|.      +..++|..|+|+|++...++. 
T Consensus       201 h~~~~~~ll~ag~di------n~~t~~g-talheaalcgk~evvr~ll~~gi------n~h~~n~~~qtaldil~d~~~-  266 (854)
T KOG0507|consen  201 HVECMQALLEAGFDI------NYTTEDG-TALHEAALCGKAEVVRFLLEIGI------NTHIKNQHGQTALDIIIDLQE-  266 (854)
T ss_pred             hHHHHHHHHhcCCCc------ccccccc-hhhhhHhhcCcchhhhHHHhhcc------ccccccccchHHHHHHHhcch-
Confidence            999999999999887      7766666 99999999999999999999987      889999999999999987653 


Q ss_pred             cCchhHHHHH
Q 012836          237 AGDREIEEIF  246 (455)
Q Consensus       237 ~~~~~i~~~L  246 (455)
                      ....++.-.+
T Consensus       267 ~~~~ei~ga~  276 (854)
T KOG0507|consen  267 NRRYEIAGAV  276 (854)
T ss_pred             hhhhhhhhhh
Confidence            3334444333

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2e-23  Score=224.77  Aligned_cols=176  Identities=20%  Similarity=0.223  Sum_probs=157.9

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS   85 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa   85 (455)
                      ..+.++||.||..|+.+.++.|++.+.+.+..  +..|.||||+|+..|+.++++.|++++.+ ++.+|.+|+||||+|+
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~--d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~  599 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLDPDIG--DSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAI  599 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHH
Confidence            35679999999999999999999998776543  34699999999999999999999999987 6778999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 012836           86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV  165 (455)
Q Consensus        86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  165 (455)
                      ..|+.+++++|++.+...   ....+.++||.|+..|+.++++.|+++ |.+++..|.+|+||||+|+..|+.+++++|+
T Consensus       600 ~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        600 SAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            999999999999876554   345678999999999999999999987 8999999999999999999999999999999


Q ss_pred             HHhhhhcccccccccCCCC-CcHHHHHHhc
Q 012836          166 DWIRDVKKENILNMKDKQG-NTALHLATWK  194 (455)
Q Consensus       166 ~~g~~~~~~~~~~~~d~~G-~T~Lh~A~~~  194 (455)
                      ++|+++      +..|..| .||++++...
T Consensus       676 ~~GAdv------~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        676 MNGADV------DKANTDDDFSPTELRELL  699 (823)
T ss_pred             HcCCCC------CCCCCCCCCCHHHHHHHH
Confidence            999987      8888888 8999888543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=6.8e-24  Score=209.40  Aligned_cols=232  Identities=26%  Similarity=0.282  Sum_probs=195.3

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCc-----------ccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCC
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPL-----------ILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQD   76 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~-----------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   76 (455)
                      .++-|..|+..||.+.+..||+....           ......+..|.|+||.|+.+|+.++++.|++..+- ....|..
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~k   81 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDTK   81 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhcc
Confidence            45779999999999999999985311           12222333599999999999999999999998875 5666799


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcC
Q 012836           77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN  156 (455)
Q Consensus        77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~  156 (455)
                      |.+|||+|+-.|+.++++.|+.++... +..+..|.||||.|+..||.+++.+|+.+ ++++...|..++|+|.+|++.|
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~-~adp~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKK-NADPFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhc-CCCccccCcccccHHHHHHHhh
Confidence            999999999999999999999999544 88999999999999999999999999997 8999999999999999999999


Q ss_pred             CHHHHHHHHHHhhhhccccc--ccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCC
Q 012836          157 QFEVVRALVDWIRDVKKENI--LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP  234 (455)
Q Consensus       157 ~~~~v~~Ll~~g~~~~~~~~--~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~  234 (455)
                      ..++++.|++..-.......  -..++..+-+|||+|+++|+.++++.|++.|.      ++|...++| |+||.|.   
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~------din~~t~~g-talheaa---  229 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF------DINYTTEDG-TALHEAA---  229 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC------Ccccccccc-hhhhhHh---
Confidence            99999999986211111000  23456778899999999999999999999998      788877765 8899985   


Q ss_pred             CCcCchhHHHHHHHhcccc
Q 012836          235 SEAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       235 ~~~~~~~i~~~L~~~ga~~  253 (455)
                       ..+..+++.+|++.|...
T Consensus       230 -lcgk~evvr~ll~~gin~  247 (854)
T KOG0507|consen  230 -LCGKAEVVRFLLEIGINT  247 (854)
T ss_pred             -hcCcchhhhHHHhhcccc
Confidence             447889999999999854

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.5e-22  Score=203.53  Aligned_cols=242  Identities=13%  Similarity=0.074  Sum_probs=191.6

Q ss_pred             ccCHHHHH-HHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHH-cCCHHHHHHHHHcCCcc---------------
Q 012836            7 RMDRRLIA-AALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASA-YGHVDFVKEIIRLKPDF---------------   69 (455)
Q Consensus         7 ~~~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~---------------   69 (455)
                      .+..++|. |...|+.|+++.|+++|++++....  .+.||||+|+. .++.|++++|+++|++.               
T Consensus        70 ~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n--~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~  147 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELLKLLISKGLEINSIKN--GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQI  147 (631)
T ss_pred             CCccHHHHHHHhcccHHHHHHHHHcCCCcccccC--CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhc
Confidence            45556755 4567899999999999998875543  48899999965 69999999999999641               


Q ss_pred             --------------------hhhhcCCCCcHHHHHHHcC-------CHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836           70 --------------------AKEVNQDGFSPMHMASANG-------QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG  122 (455)
Q Consensus        70 --------------------~~~~~~~g~tpLh~Aa~~g-------~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  122 (455)
                                          .+..|..|.||||+|+.++       +.++++.|+++|++. +..|..|.||||+|+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcc
Confidence                                1244667999999999999       899999999999998 778999999999999998


Q ss_pred             --CHHHHHHHHHhcCc---------------------ccc----------------------------------------
Q 012836          123 --RVDVVSEMLSAYGE---------------------CAE----------------------------------------  139 (455)
Q Consensus       123 --~~~~v~~Ll~~~~~---------------------~~~----------------------------------------  139 (455)
                        +.|+++.|++..-.                     .++                                        
T Consensus       227 ~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  306 (631)
T PHA02792        227 DIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSI  306 (631)
T ss_pred             cchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHH
Confidence              78888887763110                     000                                        


Q ss_pred             ---------------------------ccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCC--CcHHHH
Q 012836          140 ---------------------------DVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG--NTALHL  190 (455)
Q Consensus       140 ---------------------------~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G--~T~Lh~  190 (455)
                                                 .......++++.|+..|+.+++++|+++|+++      +.+|.+|  .||||+
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI------N~kD~~g~~~TpLh~  380 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV------VEDDDNIINIMPLFP  380 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch------hhhcCCCCChhHHHH
Confidence                                       00001245688899999999999999999997      8888775  699999


Q ss_pred             HHhcCCh---HHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCC
Q 012836          191 ATWKREC---QVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEP  267 (455)
Q Consensus       191 A~~~~~~---~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  267 (455)
                      |+.....   +++++|+++|+      ++|.+|..|.||||+|..    .++.+++++|+++|+..         ..++.
T Consensus       381 A~~n~~~~v~~IlklLIs~GA------DIN~kD~~G~TPLh~Aa~----~~n~eivelLLs~GADI---------N~kD~  441 (631)
T PHA02792        381 TLSIHESDVLSILKLCKPYID------DINKIDKHGRSILYYCIE----SHSVSLVEWLIDNGADI---------NITTK  441 (631)
T ss_pred             HHHhccHhHHHHHHHHHhcCC------ccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCC---------CCcCC
Confidence            8876654   46888999999      899999999999999964    47889999999999853         33455


Q ss_pred             CCCCccccc
Q 012836          268 HGQTSVDNC  276 (455)
Q Consensus       268 ~~~~~~~~~  276 (455)
                      .|.+++...
T Consensus       442 ~G~TpL~~A  450 (631)
T PHA02792        442 YGSTCIGIC  450 (631)
T ss_pred             CCCCHHHHH
Confidence            667765543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-23  Score=198.85  Aligned_cols=205  Identities=25%  Similarity=0.358  Sum_probs=174.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCC
Q 012836           10 RRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQ   89 (455)
Q Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~   89 (455)
                      -.++.|++.||.+.+..|+..+...+..  +.+|.|+||-+|...+.+||++|++.+++ ++..|..||||||.|+..|+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~--n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLC--NVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCcccc--CCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcchhhccccc
Confidence            4588999999999999999988665332  23599999999999999999999999998 68889999999999999999


Q ss_pred             HHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHH--------------------------HHHHhcCcccccccc
Q 012836           90 IDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVS--------------------------EMLSAYGECAEDVSV  143 (455)
Q Consensus        90 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~--------------------------~Ll~~~~~~~~~~~~  143 (455)
                      ..++++|+.+++++ ...+.+|..|+..+...-..++..                          ..+. .|...+..+.
T Consensus       119 ~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~  196 (527)
T KOG0505|consen  119 LNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARHA  196 (527)
T ss_pred             HHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-cccccccccc
Confidence            99999999999998 556677777766543222222211                          2222 3666666777


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCC
Q 012836          144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG  223 (455)
Q Consensus       144 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g  223 (455)
                      .|.|.||+|+.+|..++.++|++.|.++      +.+|.+|+||||.|+.-|+.+++++|+++|+      +.+.++..|
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~------~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga------~~d~~t~~g  264 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSV------NIKDYDGWTPLHAAAHWGQEDACELLVEHGA------DMDAKTKMG  264 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCc------ccccccCCCcccHHHHhhhHhHHHHHHHhhc------ccchhhhcC
Confidence            7999999999999999999999999887      9999999999999999999999999999999      899999999


Q ss_pred             CCHHHHHh
Q 012836          224 LTALDVLL  231 (455)
Q Consensus       224 ~t~l~~a~  231 (455)
                      .||++++.
T Consensus       265 ~~p~dv~d  272 (527)
T KOG0505|consen  265 ETPLDVAD  272 (527)
T ss_pred             CCCccchh
Confidence            99999994

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=4.7e-24  Score=181.29  Aligned_cols=205  Identities=22%  Similarity=0.235  Sum_probs=180.6

Q ss_pred             cCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHH
Q 012836            4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHM   83 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   83 (455)
                      .+.+|-..++.|+-.|+.+.+...+.++...+.-.  ..+.+|+.+++...+.+.+..+.++.   ++..|+.|.|||.+
T Consensus        92 t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs--~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiW  166 (296)
T KOG0502|consen   92 TDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVS--LMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIW  166 (296)
T ss_pred             CCchhhhhhhhcCCCCCcceeeeeecccccCCccc--cccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHH
Confidence            34557788999999999999999888776554322  24889999999999998887776653   67789999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836           84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA  163 (455)
Q Consensus        84 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~  163 (455)
                      |+..|++++|++|++.|+++ ........++|.+|++.|..++|+.||.+ +.++|..|-+|-|||.+|++.++.++++.
T Consensus       167 Aaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r-~vdVNvyDwNGgTpLlyAvrgnhvkcve~  244 (296)
T KOG0502|consen  167 AAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTR-EVDVNVYDWNGGTPLLYAVRGNHVKCVES  244 (296)
T ss_pred             HHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhc-CCCcceeccCCCceeeeeecCChHHHHHH
Confidence            99999999999999999998 77788889999999999999999999997 88999999999999999999999999999


Q ss_pred             HHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHH
Q 012836          164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD  228 (455)
Q Consensus       164 Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~  228 (455)
                      |++.|+++      +..|..|++++.+|+..|+. +++..+++-+      +.+.+|+.-.||+|
T Consensus       245 Ll~sGAd~------t~e~dsGy~~mdlAValGyr-~Vqqvie~h~------lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  245 LLNSGADV------TQEDDSGYWIMDLAVALGYR-IVQQVIEKHA------LKLCQDSEKRTPLH  296 (296)
T ss_pred             HHhcCCCc------ccccccCCcHHHHHHHhhhH-HHHHHHHHHH------HHHhhcccCCCCCC
Confidence            99999998      89999999999999999988 8888888766      67778877777764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=1.8e-22  Score=216.14  Aligned_cols=214  Identities=16%  Similarity=0.117  Sum_probs=160.6

Q ss_pred             ccCcccCHHHH-HHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcC---CHHHHHHHHHcCCc-----ch---
Q 012836            3 SYSTRMDRRLI-AAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYG---HVDFVKEIIRLKPD-----FA---   70 (455)
Q Consensus         3 ~~~~~~~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~-----~~---   70 (455)
                      ..|..|.|||| .|+..++.++++.|++.+.      .+..|+||||.|+..+   ..++++.+.+..+.     ..   
T Consensus        47 ~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~  120 (743)
T TIGR00870        47 CPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQ  120 (743)
T ss_pred             CcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccc
Confidence            34678999999 8888888899999888765      2345999999998732   22333333333322     01   


Q ss_pred             -hhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCC--------------CCCCCHHHHHHHhCCHHHHHHHHHhcC
Q 012836           71 -KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--------------PERKTPLHFAAIKGRVDVVSEMLSAYG  135 (455)
Q Consensus        71 -~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~~~~  135 (455)
                       ...+..|.||||+||.+|+.++++.|+++|+++ +.++              ..|.+|||.|+..|+.++++.|++. |
T Consensus       121 ~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~-g  198 (743)
T TIGR00870       121 YTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED-P  198 (743)
T ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC-C
Confidence             112356999999999999999999999999887 3322              3589999999999999999999987 8


Q ss_pred             ccccccccCCCcHHHHHHHcC---------CHHHHHHHHHHhhhhcc-cccccccCCCCCcHHHHHHhcCChHHHHHHHh
Q 012836          136 ECAEDVSVQRETVLHLAVKNN---------QFEVVRALVDWIRDVKK-ENILNMKDKQGNTALHLATWKRECQVVELLLS  205 (455)
Q Consensus       136 ~~~~~~~~~g~t~Lh~A~~~~---------~~~~v~~Ll~~g~~~~~-~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  205 (455)
                      ++++..|..|+||||+|+..+         ...+.+++++.++.... ..+.+..|.+|.||||+|+..|+.+++++|++
T Consensus       199 adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       199 ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            899999999999999999987         23456677776655321 23346679999999999999999999999999


Q ss_pred             cCCCCCCCccccccCCCCCCHHHHH
Q 012836          206 HGANASGGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       206 ~ga~~~~~v~~~~~n~~g~t~l~~a  230 (455)
                      .+.      +........+.+.+.+
T Consensus       279 ~~~------~~kk~~a~~~~~~~~~  297 (743)
T TIGR00870       279 IKY------KQKKFVAWPNGQQLLS  297 (743)
T ss_pred             HHH------hcceeeccCcchHhHh
Confidence            765      2223334455555554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=5.2e-22  Score=180.76  Aligned_cols=164  Identities=30%  Similarity=0.415  Sum_probs=145.3

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh-----CCHHHHHHHHHhcCccccc-ccc
Q 012836           70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK-----GRVDVVSEMLSAYGECAED-VSV  143 (455)
Q Consensus        70 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~-~~~  143 (455)
                      ++..|.+|+|+||||+.++|+++|+.||+.+...++.++.-|.||+++|+..     .+.++|..|+.- |. +|. ...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gn-VNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GD-VNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cC-cchhhhh
Confidence            5667999999999999999999999999999877789999999999999864     467899998875 43 443 346


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCC
Q 012836          144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG  223 (455)
Q Consensus       144 ~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g  223 (455)
                      .|+|+|++|+.+|+.++++.|+..|+|+      |.+|.+|.|+|++|+.+|+.+++++||....     +|+...|.+|
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdV------NiQDdDGSTALMCA~EHGhkEivklLLA~p~-----cd~sLtD~Dg  407 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADV------NIQDDDGSTALMCAAEHGHKEIVKLLLAVPS-----CDISLTDVDG  407 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCC------ccccCCccHHHhhhhhhChHHHHHHHhccCc-----ccceeecCCC
Confidence            7999999999999999999999999998      9999999999999999999999999998754     4899999999


Q ss_pred             CCHHHHHhhCCCCcCchhHHHHHHHhc
Q 012836          224 LTALDVLLSFPSEAGDREIEEIFWSAG  250 (455)
Q Consensus       224 ~t~l~~a~~~~~~~~~~~i~~~L~~~g  250 (455)
                      -|+|.+|.    +.++.+|.-+|..+-
T Consensus       408 STAl~IAl----eagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  408 STALSIAL----EAGHREIAVMLYAHM  430 (452)
T ss_pred             chhhhhHH----hcCchHHHHHHHHHH
Confidence            99999996    458889988887653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=4e-21  Score=166.86  Aligned_cols=140  Identities=21%  Similarity=0.259  Sum_probs=101.5

Q ss_pred             hhhcCCCCcHHHHHHHcCCH----HHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHH---HHHHHHhcCccccccc-
Q 012836           71 KEVNQDGFSPMHMASANGQI----DVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV---VSEMLSAYGECAEDVS-  142 (455)
Q Consensus        71 ~~~~~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~---v~~Ll~~~~~~~~~~~-  142 (455)
                      ...+.++.++||.||+.|+.    +++++|.+.+..+ +.+|.+|+||||+|+..|+.+.   +++|++. +.+++..+ 
T Consensus        14 ~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadin~~d~   91 (166)
T PHA02743         14 VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNM-GADINAREL   91 (166)
T ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCCCCCCC
Confidence            44566677778888877776    4555666666655 6677778888888887776554   6667765 77777776 


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHH-HhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCC
Q 012836          143 VQRETVLHLAVKNNQFEVVRALVD-WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNH  221 (455)
Q Consensus       143 ~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~  221 (455)
                      ..|+||||+|+..++.+++++|++ .|+++      +.+|..|.||||+|+..++.+++++|+++|+      +++..+.
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~------~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga------~~~~~~~  159 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCRQLGVNL------GAINYQHETAYHIAYKMRDRRMMEILRANGA------VCDDPLS  159 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccCCCc------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCccc
Confidence            478888888888888888888874 56665      6778888888888888888888888888887      5666665


Q ss_pred             CCC
Q 012836          222 SGL  224 (455)
Q Consensus       222 ~g~  224 (455)
                      .|.
T Consensus       160 ~~~  162 (166)
T PHA02743        160 IGL  162 (166)
T ss_pred             CCc
Confidence            553

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.7e-20  Score=162.89  Aligned_cols=136  Identities=15%  Similarity=0.113  Sum_probs=117.9

Q ss_pred             CCChHHHHHHHcCCH----HHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHH---HHHHHhcCccccccCC-CCCCC
Q 012836           42 SAGNPLHVASAYGHV----DFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDV---VRGLMKFDQKLCHLQG-PERKT  113 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~i---v~~Ll~~~~~~~~~~d-~~g~t  113 (455)
                      .+.++||.||+.|+.    +++++|++.+.. .+..|..|+||||+|+..|+.+.   +++|++.++++ +.+| ..|.|
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~T   96 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNT   96 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCc
Confidence            477899999999998    555666776665 56778999999999999988654   89999999988 7777 58999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCC
Q 012836          114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN  185 (455)
Q Consensus       114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~  185 (455)
                      |||+|+..|+.+++++|+...+.+++..|..|+||||+|+..++.+++++|+++|++.      +.++..|.
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~------~~~~~~~~  162 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC------DDPLSIGL  162 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCcccCCc
Confidence            9999999999999999997668999999999999999999999999999999999887      66666554

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=1.6e-20  Score=163.76  Aligned_cols=129  Identities=19%  Similarity=0.284  Sum_probs=91.4

Q ss_pred             hhcCCCCcHHHHHHHcCCHHHHHHHHhc------CccccccCCCCCCCHHHHHHHhCC----HHHHHHHHHhcCcccccc
Q 012836           72 EVNQDGFSPMHMASANGQIDVVRGLMKF------DQKLCHLQGPERKTPLHFAAIKGR----VDVVSEMLSAYGECAEDV  141 (455)
Q Consensus        72 ~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~------~~~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~  141 (455)
                      ..|..|.||||+|++.|+.++++.|+..      ++++ +.+|..|.||||+|+..|+    .++++.|++. +.+++..
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCCC
Confidence            3456677777777777777777776532      2333 6667777777777777777    4667777765 6777776


Q ss_pred             cc-CCCcHHHHHHHcCCHHHHHHHHH-HhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          142 SV-QRETVLHLAVKNNQFEVVRALVD-WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       142 ~~-~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      +. +|+||||+|+..++.+++++|++ .|.++      +.+|.+|.||||+|+..++.+++++|++.++
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~------~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL------HFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            64 77777777777777777777776 35554      6777777777777777777777777777655

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=2.5e-20  Score=162.55  Aligned_cols=132  Identities=20%  Similarity=0.338  Sum_probs=116.9

Q ss_pred             ccCCCCCCCHHHHHHHhCCHHHHHHHHHhc-----CccccccccCCCcHHHHHHHcCC----HHHHHHHHHHhhhhcccc
Q 012836          105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAY-----GECAEDVSVQRETVLHLAVKNNQ----FEVVRALVDWIRDVKKEN  175 (455)
Q Consensus       105 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~-----~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~  175 (455)
                      ..+|..|.||||+|+..|+.++++.|+...     +.+++..|..|+||||+|+..|+    .+++++|+++|+++    
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi----   90 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI----   90 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC----
Confidence            346788999999999999999999986532     56788899999999999999998    58999999998887    


Q ss_pred             cccccCC-CCCcHHHHHHhcCChHHHHHHHh-cCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccc
Q 012836          176 ILNMKDK-QGNTALHLATWKRECQVVELLLS-HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       176 ~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~-~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~  252 (455)
                        |.+|. +|+||||+|+..++.+++++|++ .|+      +++.+|.+|.|||++|..    .+..+++++|++.++.
T Consensus        91 --n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~------~~~~~n~~g~tpL~~A~~----~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         91 --NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGI------DLHFCNADNKSPFELAID----NEDVAMMQILREIVAT  157 (169)
T ss_pred             --CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCcCCCCCCCHHHHHHH----CCCHHHHHHHHHHHHH
Confidence              88885 99999999999999999999997 477      889999999999999964    4678999999998874

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1e-19  Score=170.20  Aligned_cols=149  Identities=17%  Similarity=0.192  Sum_probs=127.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhh----cCCCCcHHHHHHHcCCHHHHHHHHhcCccccccC-CCCCCCHHHH
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEV----NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQ-GPERKTPLHF  117 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-d~~g~tpLh~  117 (455)
                      ..++||.|+..|+.++++.|+++|++. +.+    +..|.||||+|+..|+.+++++|+++|+++ +.+ +..|.||||.
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~TpLh~  110 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKITPLYI  110 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCCHHHH
Confidence            456788888889999999999999874 444    458999999999999999999999999998 654 5679999999


Q ss_pred             HHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCCh
Q 012836          118 AAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKREC  197 (455)
Q Consensus       118 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~  197 (455)
                      |+..|+.++++.|+.. |++++..|..|.||||+|++.++.+++..+..           +..+..+.+|++++   ++.
T Consensus       111 Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~n~  175 (300)
T PHA02884        111 SVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFLAFMICD-----------NEISNFYKHPKKIL---INF  175 (300)
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC-----------CcccccccChhhhh---ccH
Confidence            9999999999999987 89999999999999999999888887765542           33577788899876   478


Q ss_pred             HHHHHHHhcCC
Q 012836          198 QVVELLLSHGA  208 (455)
Q Consensus       198 ~iv~~Ll~~ga  208 (455)
                      +++++|++++.
T Consensus       176 ei~~~Lish~v  186 (300)
T PHA02884        176 DILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=5.3e-20  Score=151.05  Aligned_cols=140  Identities=31%  Similarity=0.355  Sum_probs=125.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHH
Q 012836           80 PMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE  159 (455)
Q Consensus        80 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~  159 (455)
                      -+-+|+..+...-|+.||+..++.++.+|.+|.||||.|+.+||.++++.|+.. +++.+.+...|+||||-||+..+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchh
Confidence            367899999999999999999999999999999999999999999999999987 9999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCCh-HHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKREC-QVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       160 ~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~-~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      ++-+|+++|+|+      |...+...||||+|+..++. ..+++|+...     .+.+..+++.+.||+++|.
T Consensus       145 va~~LLqhgaDV------nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dr-----yi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  145 VAGRLLQHGADV------NAQTKGLLTPLHLAAGNRNSRDTLELLLHDR-----YIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             HHHHHHhccCcc------cccccccchhhHHhhcccchHHHHHHHhhcc-----ccChhhhcCccchHHHHHH
Confidence            999999999998      88888899999999988776 4566666543     3478889999999999994

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.5e-19  Score=169.22  Aligned_cols=156  Identities=14%  Similarity=0.129  Sum_probs=133.4

Q ss_pred             hhhcCCCCc-HHHHHHHcCCHHHHHHHHhcCccccccC----CCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccc-ccC
Q 012836           71 KEVNQDGFS-PMHMASANGQIDVVRGLMKFDQKLCHLQ----GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV-SVQ  144 (455)
Q Consensus        71 ~~~~~~g~t-pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~----d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~  144 (455)
                      ..+|..|+| +||.|+..|+.+++++|+++|+++ +.+    +..|.||||+|+..|+.+++++|+++ |++++.. +..
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~  103 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEA  103 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCC
Confidence            455777766 566677789999999999999998 555    46899999999999999999999987 9999986 467


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCC
Q 012836          145 RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL  224 (455)
Q Consensus       145 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~  224 (455)
                      |.||||+|+..++.+++++|++.|+++      +.+|..|.||||+|+..++.+++.++.  |.         ..+..+.
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdi------n~kd~~G~TpL~~A~~~~~~~~~~~~~--~~---------~~~~~~~  166 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADI------NIQTNDMVTPIELALMICNNFLAFMIC--DN---------EISNFYK  166 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHhCChhHHHHhc--CC---------ccccccc
Confidence            999999999999999999999999988      899999999999999999988876664  32         2466778


Q ss_pred             CHHHHHhhCCCCcCchhHHHHHHHhccc
Q 012836          225 TALDVLLSFPSEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       225 t~l~~a~~~~~~~~~~~i~~~L~~~ga~  252 (455)
                      +|++++       ...+++++|..+++.
T Consensus       167 ~~~~~~-------~n~ei~~~Lish~vl  187 (300)
T PHA02884        167 HPKKIL-------INFDILKILVSHFIL  187 (300)
T ss_pred             Chhhhh-------ccHHHHHHHHHHHHH
Confidence            888875       357899999999984

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=3.9e-20  Score=177.17  Aligned_cols=212  Identities=24%  Similarity=0.313  Sum_probs=167.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCH
Q 012836           45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV  124 (455)
Q Consensus        45 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  124 (455)
                      -.+.-|+..|..+-|+.|+..+.+. +..|.+|.|+||.+|...+.+||++|++.++++ +..|..|+||||.|+..||.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence            3567889999999999999999774 778999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHH-------------------H-HHhhhhcccccccccCCCC
Q 012836          125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL-------------------V-DWIRDVKKENILNMKDKQG  184 (455)
Q Consensus       125 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L-------------------l-~~g~~~~~~~~~~~~d~~G  184 (455)
                      +++++|++. |++...++..|..|+..+...-..++...-                   + +...........+..+..|
T Consensus       120 ~i~~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG  198 (527)
T KOG0505|consen  120 NIVEYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARG  198 (527)
T ss_pred             HHHHHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccccc
Confidence            999999998 888877777777666554322211111110                   0 0000011223347777779


Q ss_pred             CcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCC
Q 012836          185 NTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRS  264 (455)
Q Consensus       185 ~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~  264 (455)
                      .|.||.|+.+|..++.++|++.|.      +++++|.+|+||||.|...    +..+..++|.++|+.-.         .
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~------~~~~~D~dgWtPlHAAA~W----g~~~~~elL~~~ga~~d---------~  259 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGY------SVNIKDYDGWTPLHAAAHW----GQEDACELLVEHGADMD---------A  259 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhcc------CcccccccCCCcccHHHHh----hhHhHHHHHHHhhcccc---------h
Confidence            999999999999999999999998      8999999999999999654    78889999999999543         3


Q ss_pred             CCCCCCCccccccc
Q 012836          265 PEPHGQTSVDNCIS  278 (455)
Q Consensus       265 ~~~~~~~~~~~~~~  278 (455)
                      ....|++|.+.+.+
T Consensus       260 ~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  260 KTKMGETPLDVADE  273 (527)
T ss_pred             hhhcCCCCccchhh
Confidence            33445555554443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=3.6e-20  Score=159.22  Aligned_cols=130  Identities=19%  Similarity=0.221  Sum_probs=88.5

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcC------ccccccCCCCCCCHHHHHHHhCCHH---HHHHHHHhcCccccc
Q 012836           70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFD------QKLCHLQGPERKTPLHFAAIKGRVD---VVSEMLSAYGECAED  140 (455)
Q Consensus        70 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~------~~~~~~~d~~g~tpLh~A~~~g~~~---~v~~Ll~~~~~~~~~  140 (455)
                      .+..|..|.||||+|+..|+.  ++++...+      ......+|.+|.||||+|+..|+.+   +++.|++. +.+++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccc
Confidence            445566777777777777763  22222111      1112345677778888887777764   46666665 677777


Q ss_pred             cc-cCCCcHHHHHHHcCCHHHHHHHHHH-hhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          141 VS-VQRETVLHLAVKNNQFEVVRALVDW-IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       141 ~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      .+ ..|+||||+|+..++.+++++|++. |.++      +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~------n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNM------EILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC------ccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            76 3778888888888888888887763 5555      7777888888888888888888888887776

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=5.3e-20  Score=167.76  Aligned_cols=161  Identities=23%  Similarity=0.290  Sum_probs=140.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc-----CCHHHHHHHHhcCccccccCCCCCCCH
Q 012836           40 FASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN-----GQIDVVRGLMKFDQKLCHLQGPERKTP  114 (455)
Q Consensus        40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~d~~g~tp  114 (455)
                      +.+|+|+||||+.+++.++|+.||+.+-..+++.|..|+||+++|+..     .+.++|..|.+.|.-. -.....|+|+
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN-aKAsQ~gQTA  343 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN-AKASQHGQTA  343 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc-hhhhhhcchh
Confidence            346999999999999999999999999777889999999999999853     4678899998876543 3345679999


Q ss_pred             HHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhc
Q 012836          115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK  194 (455)
Q Consensus       115 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~  194 (455)
                      |++|+.+|+.++++.||. |++++|..|.+|-|+|++|+++|+.|++++|+..     ..-.+...|.+|.|+|.+|-..
T Consensus       344 LMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~-----p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  344 LMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV-----PSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhcc-----CcccceeecCCCchhhhhHHhc
Confidence            999999999999999997 6999999999999999999999999999999963     2333488999999999999999


Q ss_pred             CChHHHHHHHhcC
Q 012836          195 RECQVVELLLSHG  207 (455)
Q Consensus       195 ~~~~iv~~Ll~~g  207 (455)
                      |+.+|.-+|..+-
T Consensus       418 gh~eIa~mlYa~~  430 (452)
T KOG0514|consen  418 GHREIAVMLYAHM  430 (452)
T ss_pred             CchHHHHHHHHHH
Confidence            9999999887664

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.3e-19  Score=155.68  Aligned_cols=128  Identities=17%  Similarity=0.161  Sum_probs=107.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcC------CcchhhhcCCCCcHHHHHHHcCCH---HHHHHHHhcCccccccCC-CC
Q 012836           41 ASAGNPLHVASAYGHVDFVKEIIRLK------PDFAKEVNQDGFSPMHMASANGQI---DVVRGLMKFDQKLCHLQG-PE  110 (455)
Q Consensus        41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~~~~~~~~~g~tpLh~Aa~~g~~---~iv~~Ll~~~~~~~~~~d-~~  110 (455)
                      ..|.||||+|+..|+.  ++.+...+      +......|.+|.||||+|+..|+.   +++++|++.++++ +.++ .+
T Consensus        15 ~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~   91 (154)
T PHA02736         15 IEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVF   91 (154)
T ss_pred             CCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCC
Confidence            3599999999999984  23322211      223456788999999999999987   4688999999988 6777 58


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhh
Q 012836          111 RKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV  171 (455)
Q Consensus       111 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  171 (455)
                      |.||||+|+..|+.+++++|+...+.+++..|..|+||||+|+..|+.+++++|+++|++.
T Consensus        92 g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         92 GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999998668899999999999999999999999999999988764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=7.4e-19  Score=144.36  Aligned_cols=142  Identities=23%  Similarity=0.304  Sum_probs=125.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHH
Q 012836           46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVD  125 (455)
Q Consensus        46 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  125 (455)
                      -+..|+..+....|+.||+..++.++.+|.+|.||||.|+.+|+.+||+.|+..+++. ..+...|+||||.||+..+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            4668999999999999999999999999999999999999999999999999999998 889999999999999999999


Q ss_pred             HHHHHHHhcCccccccccCCCcHHHHHHHcCC-HHHHHHHHH-HhhhhcccccccccCCCCCcHHHHHHhcC
Q 012836          126 VVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ-FEVVRALVD-WIRDVKKENILNMKDKQGNTALHLATWKR  195 (455)
Q Consensus       126 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~v~~Ll~-~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~  195 (455)
                      ++-.||++ |++++.......||||+|+..++ ...+++|+. .+.++      ..+++.+.||+.+|-+.+
T Consensus       145 va~~LLqh-gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~p------g~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQH-GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHP------GLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhc-cCcccccccccchhhHHhhcccchHHHHHHHhhccccCh------hhhcCccchHHHHHHHhh
Confidence            99999998 99999999999999999998877 455666664 22222      567889999999997664

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=2e-19  Score=159.06  Aligned_cols=152  Identities=30%  Similarity=0.365  Sum_probs=125.3

Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHH
Q 012836           85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL  164 (455)
Q Consensus        85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  164 (455)
                      |+.|+.--|+.-++......+..|..|.+|||+||+.||..+++.|+++ |+-+|..+....||||+|+.+|+.++++.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHH
Confidence            4445544445445544444588899999999999999999999999998 899999988889999999999999999999


Q ss_pred             HHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHH
Q 012836          165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEE  244 (455)
Q Consensus       165 l~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~  244 (455)
                      ++..+|+      |..++.|+|||||||.-|+-.+.+-|+..|+      .+++.|++|.|||+.|.    ..-...+.+
T Consensus        87 l~~kadv------navnehgntplhyacfwgydqiaedli~~ga------~v~icnk~g~tpldkak----p~l~~~l~e  150 (448)
T KOG0195|consen   87 LSRKADV------NAVNEHGNTPLHYACFWGYDQIAEDLISCGA------AVNICNKKGMTPLDKAK----PMLKNTLLE  150 (448)
T ss_pred             HHHhccc------chhhccCCCchhhhhhhcHHHHHHHHHhccc------eeeecccCCCCchhhhc----hHHHHHHHH
Confidence            9988877      9999999999999999999999999999999      89999999999999882    112233445


Q ss_pred             HHHHhcccc
Q 012836          245 IFWSAGAMR  253 (455)
Q Consensus       245 ~L~~~ga~~  253 (455)
                      +-.++|-.+
T Consensus       151 ~aek~gq~~  159 (448)
T KOG0195|consen  151 IAEKHGQSP  159 (448)
T ss_pred             HHHHhCCCC
Confidence            555555543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=1.3e-17  Score=167.51  Aligned_cols=191  Identities=22%  Similarity=0.275  Sum_probs=159.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCc--------ccCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCcchhhh----c
Q 012836           10 RRLIAAALTGDVQTLQQLFVENPL--------ILHTPAFASAGNPLHVASAY---GHVDFVKEIIRLKPDFAKEV----N   74 (455)
Q Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~----~   74 (455)
                      .++..|...|+.+.+..++.....        ..... ...|+|.||.|..+   ++.++++.|++..|.+++..    .
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            668888889999888888775521        11111 22499999999884   45699999999887655433    4


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCccccc--------cCC--------------CCCCCHHHHHHHhCCHHHHHHHHH
Q 012836           75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCH--------LQG--------------PERKTPLHFAAIKGRVDVVSEMLS  132 (455)
Q Consensus        75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~--------~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~  132 (455)
                      ..|.||||+|+.+.+.++|++|++.|+|+..        ..|              ..|+.||-+||-.++.|+++.|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            5799999999999999999999999988721        111              137799999999999999999999


Q ss_pred             hcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhc
Q 012836          133 AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH  206 (455)
Q Consensus       133 ~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  206 (455)
                      + +++++..|.+|+|.||..+.+-..++..+++++|++    .+...+|++|-|||.+|++.|..++++.+++.
T Consensus       262 ~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~----~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 H-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN----ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             c-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC----ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            6 999999999999999999999999999999999987    33478899999999999999999999999998

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.77  E-value=4.3e-19  Score=180.67  Aligned_cols=231  Identities=23%  Similarity=0.305  Sum_probs=206.0

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS   85 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa   85 (455)
                      ...+|+|-.||..|+.|.++.|+.++..+....  ..|.+||.+|+-.||..+|+.|+.+..++-.+.|..+.|+|.+||
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganiehrd--kkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRD--KKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccccccc--cccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            456899999999999999999999988765543  469999999999999999999999999988888999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc--cCCCcHHHHHHHcCCHHHHHH
Q 012836           86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS--VQRETVLHLAVKNNQFEVVRA  163 (455)
Q Consensus        86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~v~~  163 (455)
                      ..|..++|++||..+++. ..++-...|||.+|...|..+++..|+.. |..++.+.  +.|-.||.+|..+|+.+..+.
T Consensus       833 sggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~-GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSS-GSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             CCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhc-ccccccccccccCcchhhhhhhccccHHHHH
Confidence            999999999999999887 77888889999999999999999999998 87777654  468899999999999999999


Q ss_pred             HHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHH
Q 012836          164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIE  243 (455)
Q Consensus       164 Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~  243 (455)
                      |++.|.|++.     ...-+.||+|-+|+..|+.+++.+||...+      ++..+-+.|.|||.-+.    ..+..++-
T Consensus       911 ll~~gsdiNa-----qIeTNrnTaltla~fqgr~evv~lLLa~~a------nvehRaktgltplme~A----sgGyvdvg  975 (2131)
T KOG4369|consen  911 LLQPGSDINA-----QIETNRNTALTLALFQGRPEVVFLLLAAQA------NVEHRAKTGLTPLMEMA----SGGYVDVG  975 (2131)
T ss_pred             Hhcccchhcc-----ccccccccceeeccccCcchHHHHHHHHhh------hhhhhcccCCcccchhh----cCCccccc
Confidence            9999888732     235677899999999999999999999988      78889999999998774    45888999


Q ss_pred             HHHHHhcccccc
Q 012836          244 EIFWSAGAMRMR  255 (455)
Q Consensus       244 ~~L~~~ga~~~~  255 (455)
                      ++|+..||+...
T Consensus       976 ~~li~~gad~na  987 (2131)
T KOG4369|consen  976 NLLIAAGADTNA  987 (2131)
T ss_pred             hhhhhccccccc
Confidence            999999997653

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=3.4e-18  Score=174.25  Aligned_cols=239  Identities=21%  Similarity=0.241  Sum_probs=179.4

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      -.+.+|-++|..|+-.|+..+|+.|+..+.++.... +..++|+|.+||..|..++|+.||..+.+. ..++-...|||.
T Consensus       785 hrdkkgf~plImaatagh~tvV~~llk~ha~veaQs-drtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPls  862 (2131)
T KOG4369|consen  785 HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQS-DRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLS  862 (2131)
T ss_pred             ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhc-ccccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchh
Confidence            357788899999999999999999998887665443 455889999999999999999999988773 445777888888


Q ss_pred             HHHHcCCHHHHHHHHhcCcccccc-CCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccc-ccCCCcHHHHHHHcCCHHH
Q 012836           83 MASANGQIDVVRGLMKFDQKLCHL-QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV-SVQRETVLHLAVKNNQFEV  160 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~  160 (455)
                      +|...|..+++..|+..|.++... -...|-+||..|.++||.+.++.|++. +.++|.. .-+.+|+|-+|+-.|+.++
T Consensus       863 la~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~-gsdiNaqIeTNrnTaltla~fqgr~ev  941 (2131)
T KOG4369|consen  863 LARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP-GSDINAQIETNRNTALTLALFQGRPEV  941 (2131)
T ss_pred             hhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc-cchhccccccccccceeeccccCcchH
Confidence            888888888888888888776322 234577888888888888888888876 6666543 2355677777777777777


Q ss_pred             HHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCC-----------------------------
Q 012836          161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS-----------------------------  211 (455)
Q Consensus       161 v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~-----------------------------  211 (455)
                      +.+||...++.      ..+-+.|-|||.-++..|.+++-++|+..|++.+                             
T Consensus       942 v~lLLa~~anv------ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen  942 VFLLLAAQANV------EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLN 1015 (2131)
T ss_pred             HHHHHHHhhhh------hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhC
Confidence            77777766555      5566677777777777777777777777776521                             


Q ss_pred             CCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       212 ~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      ....+..+|++|+|+|.+|+    ..+....+++|.+++++..
T Consensus      1016 ~~atv~v~NkkG~T~Lwla~----~Gg~lss~~il~~~~ad~d 1054 (2131)
T KOG4369|consen 1016 GDATVRVPNKKGCTVLWLAS----AGGALSSCPILVSSVADAD 1054 (2131)
T ss_pred             CccceecccCCCCcccchhc----cCCccccchHHhhcccChh
Confidence            12246678899999999884    4567777888888888644

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=6.9e-18  Score=149.47  Aligned_cols=133  Identities=23%  Similarity=0.335  Sum_probs=83.5

Q ss_pred             HHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHH
Q 012836           16 ALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRG   95 (455)
Q Consensus        16 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~   95 (455)
                      |+.|+.-.|+..|++....++ ..++.|.+|||+||+.|+..+|+.|+.+++. ++..|....||||+|+..||-++|+.
T Consensus         8 cregna~qvrlwld~tehdln-~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLN-VGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCcccccc-cccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHH
Confidence            344444444444443322222 2233466777777777777777777777665 45556666677777777777777777


Q ss_pred             HHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHH
Q 012836           96 LMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA  152 (455)
Q Consensus        96 Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  152 (455)
                      |++..+++ +..++.|.||||+||..|.-.+++-|+.. |+.++..+++|.|||..|
T Consensus        86 ll~~kadv-navnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   86 LLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhh
Confidence            77766666 66667777777777777776666666664 666677777777776655

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=2.1e-16  Score=158.89  Aligned_cols=163  Identities=20%  Similarity=0.206  Sum_probs=141.0

Q ss_pred             cccCcccCHHHHHHHHc---CCHHHHHHHHhcCCcccCCCCCC---CCChHHHHHHHcCCHHHHHHHHHcCCcchhhh--
Q 012836            2 TSYSTRMDRRLIAAALT---GDVQTLQQLFVENPLILHTPAFA---SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEV--   73 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~---~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~--   73 (455)
                      ..+...|+|.||.|..+   +.-+.++.|++--|...+.....   .|+||||+|+.+.+.++|+.|++.++++ +.+  
T Consensus       137 ~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~  215 (782)
T KOG3676|consen  137 NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARAC  215 (782)
T ss_pred             ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhh
Confidence            34577899999999983   45589999999887765544332   3999999999999999999999999874 211  


Q ss_pred             -------c--------------CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHH
Q 012836           74 -------N--------------QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS  132 (455)
Q Consensus        74 -------~--------------~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  132 (455)
                             |              ..|..||.+||..++.+++++|+++++|+ +.+|..|+|.||..+..-..++...+++
T Consensus       216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~  294 (782)
T KOG3676|consen  216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALE  294 (782)
T ss_pred             ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHh
Confidence                   1              24779999999999999999999999999 9999999999999999999999999998


Q ss_pred             hcCcc--ccccccCCCcHHHHHHHcCCHHHHHHHHHH
Q 012836          133 AYGEC--AEDVSVQRETVLHLAVKNNQFEVVRALVDW  167 (455)
Q Consensus       133 ~~~~~--~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  167 (455)
                      . ++.  ...+|..|-|||.+|++.|+.++++.+++.
T Consensus       295 ~-ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  295 L-GANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             c-CCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            7 666  677889999999999999999999999996

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=4.3e-16  Score=128.14  Aligned_cols=122  Identities=36%  Similarity=0.606  Sum_probs=68.2

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHH
Q 012836           74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAV  153 (455)
Q Consensus        74 ~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  153 (455)
                      |.+|.||||+|+..|+.+++++|++.+.+. ..++..|.+|+|.|+..++.++++.|+.. +..++..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHH
Confidence            344555555555555555555555555544 44455555555555555555555555554 3344444555556666666


Q ss_pred             HcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHH
Q 012836          154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL  203 (455)
Q Consensus       154 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  203 (455)
                      ..++.+++++|++.+.+.      +..|..|.||+|+|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADV------NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCC------cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            666666666665544333      45555666666666666666666555

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=1.8e-16  Score=122.72  Aligned_cols=83  Identities=40%  Similarity=0.595  Sum_probs=62.2

Q ss_pred             HHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhc
Q 012836          115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK  194 (455)
Q Consensus       115 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~  194 (455)
                      ||+|+..|+.+++++|++. +.+++.    |+||||+|+..|+.+++++|++.|+++      +.+|.+|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADI------NSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT------T-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc------cccCCCCCCHHHHHHHc
Confidence            6777777777777777775 444443    677888888888888888888777776      77777888888888888


Q ss_pred             CChHHHHHHHhcCC
Q 012836          195 RECQVVELLLSHGA  208 (455)
Q Consensus       195 ~~~~iv~~Ll~~ga  208 (455)
                      |+.+++++|+++|+
T Consensus        70 ~~~~~~~~Ll~~g~   83 (89)
T PF12796_consen   70 GNLEIVKLLLEHGA   83 (89)
T ss_dssp             THHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHcCC
Confidence            88888888888777

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=7.5e-16  Score=119.23  Aligned_cols=85  Identities=25%  Similarity=0.435  Sum_probs=41.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHH
Q 012836           12 LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQID   91 (455)
Q Consensus        12 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~   91 (455)
                      ||.||+.|+.++++.|++.+.+...      |+||||+|+..|+.+++++|++.+++ .+..|..|+||||+|+.+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHH
Confidence            4555555555555555554432211      44555555555555555555555544 2444455555555555555555


Q ss_pred             HHHHHHhcCccc
Q 012836           92 VVRGLMKFDQKL  103 (455)
Q Consensus        92 iv~~Ll~~~~~~  103 (455)
                      ++++|++++.++
T Consensus        74 ~~~~Ll~~g~~~   85 (89)
T PF12796_consen   74 IVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHTTT-T
T ss_pred             HHHHHHHcCCCC
Confidence            555555554443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.66  E-value=2.4e-15  Score=123.66  Aligned_cols=121  Identities=34%  Similarity=0.587  Sum_probs=99.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .|.||||.|+..|+.+++++|++.+... ...+..|.||||.|+..++.+++++|++.+... +..+..|.||+|.|+..
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHc
Confidence            4888888888888888888888888763 566778888888888888888888888888765 66677888888888888


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV  165 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  165 (455)
                      ++.+++++|+++ +...+..+..|.||+++|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888888888886 5667777788888888888888888888763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=1.7e-13  Score=124.94  Aligned_cols=131  Identities=28%  Similarity=0.400  Sum_probs=119.7

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC-----HHHHHHHHHhcC--ccccccc
Q 012836           70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR-----VDVVSEMLSAYG--ECAEDVS  142 (455)
Q Consensus        70 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~--~~~~~~~  142 (455)
                      ....+..+.+++|.++..+..+++++++..+.+. +.+|.+|.||||+|+..|+     .++++.|+....  ...+..|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            3455677899999999999999999999999999 9999999999999999999     999999999844  3777779


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcC
Q 012836          143 VQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG  207 (455)
Q Consensus       143 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  207 (455)
                      ..|+||||+|+..|+.++++++++.|+++      +.++..|.|+++.|+..++.++++.+++.+
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~------~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADP------NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCC------cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999998887      778999999999999999999999999875

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=4e-14  Score=104.22  Aligned_cols=103  Identities=24%  Similarity=0.388  Sum_probs=88.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHh
Q 012836          114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW  193 (455)
Q Consensus       114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~  193 (455)
                      -+.++.++|..+-|+..+.. +.+++..- .|++|||+|+-.|+.+++++|+..|+++      +.+|+.|-|||-.|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~-g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i------~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE-GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANI------QDKDKYGITPLLSAVW   76 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc-cccHHHHh-CCcccchHhhhcchHHHHHHHHHhcccc------CCccccCCcHHHHHHH
Confidence            45678889999999888877 56666543 7899999999999999999999999987      8999999999999999


Q ss_pred             cCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836          194 KRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       194 ~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a  230 (455)
                      .|+.++|++|+++|+      +-..+--+|.+.++.+
T Consensus        77 EGH~~cVklLL~~GA------drt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGA------DRTIHAPDGTALIEAT  107 (117)
T ss_pred             HhhHHHHHHHHHcCc------ccceeCCCchhHHhhc
Confidence            999999999999999      6667777888887765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.51  E-value=8.9e-14  Score=102.39  Aligned_cols=103  Identities=18%  Similarity=0.343  Sum_probs=76.1

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcC
Q 012836            9 DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANG   88 (455)
Q Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g   88 (455)
                      +-.+..++.+|+++.|+..+.++-+++...   .|++|||+|+-+|+.+++++|+..+++ .+.+|+.|.|||--|+-.|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~---ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIY---GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHHh---CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHh
Confidence            445667788888888888887774443332   478888888888888888888888877 4666888888888888888


Q ss_pred             CHHHHHHHHhcCccccccCCCCCCCHHH
Q 012836           89 QIDVVRGLMKFDQKLCHLQGPERKTPLH  116 (455)
Q Consensus        89 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh  116 (455)
                      |.++|++|++.|++. ..+..+|.+.+.
T Consensus        79 H~~cVklLL~~GAdr-t~~~PdG~~~~e  105 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADR-TIHAPDGTALIE  105 (117)
T ss_pred             hHHHHHHHHHcCccc-ceeCCCchhHHh
Confidence            888888888888776 556666665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=9.1e-13  Score=120.16  Aligned_cols=132  Identities=34%  Similarity=0.503  Sum_probs=117.4

Q ss_pred             ccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCC-----HHHHHHHHHHhhhhcccccccc
Q 012836          105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ-----FEVVRALVDWIRDVKKENILNM  179 (455)
Q Consensus       105 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~~~  179 (455)
                      ...+..+.+++|.++..+..+++++++.. +.+++..+..|.||||+|+..++     .+++++|++.|++   ....+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~---~~~~~~  142 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD---LDVNNL  142 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHc-CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC---CCCccc
Confidence            45667789999999999999999898887 77889999999999999999999     9999999999882   012377


Q ss_pred             cCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhc
Q 012836          180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAG  250 (455)
Q Consensus       180 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~g  250 (455)
                      +|..|+||||+|+..|+.+++++|++.|+      +++..|..|.|+++.|.    ..+..++...+.+.+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~------~~~~~~~~g~t~l~~a~----~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGA------DPNSRNSYGVTALDPAA----KNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCC------CCcccccCCCcchhhhc----ccchHHHHHHHHhcC
Confidence            89999999999999999999999999999      78888999999999995    457888888888876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.41  E-value=1.6e-12  Score=115.64  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=108.8

Q ss_pred             ccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH
Q 012836            7 RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA   86 (455)
Q Consensus         7 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   86 (455)
                      .-..+|.+++-.||.+.+..||..-..++.  .+.+|.|+|..|+..|+.++|+.|++.++++....+..+.||||+|+.
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~--~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQ--RDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhc--cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            446789999999999999999987443332  234699999999999999999999999999888888899999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHh
Q 012836           87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA  133 (455)
Q Consensus        87 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  133 (455)
                      +|+.++.+.|++.|+.. ...+.-|+|+-.+|+.-|+.++|..+-..
T Consensus        89 SGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999988 77888999999999999999999765543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=1.3e-12  Score=124.86  Aligned_cols=117  Identities=23%  Similarity=0.340  Sum_probs=91.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHH
Q 012836           47 LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDV  126 (455)
Q Consensus        47 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~  126 (455)
                      |.-|+..|.+|+|+.++..-.+ ..+.|++|.|+||-|+..||.+||++|++.|+++ +..|.+|+||||.|+..+++.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHH
Confidence            4457888888888888877655 5677888889999988888999999998888887 8888889999999888888888


Q ss_pred             HHHHHHhcCccccccc-cCCCcHHHHH--HHcCCHHHHHHHHH
Q 012836          127 VSEMLSAYGECAEDVS-VQRETVLHLA--VKNNQFEVVRALVD  166 (455)
Q Consensus       127 v~~Ll~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~v~~Ll~  166 (455)
                      ++.|++. |+.+...+ .++.|+..-+  .+.|...+.+||..
T Consensus       632 ckqLVe~-GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVES-GAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhc-cceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            8888887 55554433 4667776543  34567778888864

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=1.4e-12  Score=124.72  Aligned_cols=119  Identities=24%  Similarity=0.292  Sum_probs=103.2

Q ss_pred             HHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcC
Q 012836          116 HFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR  195 (455)
Q Consensus       116 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~  195 (455)
                      .-|+..|.+|+|+.++.. -.++...+..|.|+||-|++.|+.+||++|++.|+++      |..|.+|+||||+|+..+
T Consensus       555 LDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV------Na~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV------NAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc------cCccCCCCchhhhhhhcC
Confidence            448899999999999988 6778888899999999999999999999999999998      999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHH
Q 012836          196 ECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWS  248 (455)
Q Consensus       196 ~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~  248 (455)
                      +..+++.|++.|+.     -+-..-.++.||.+-....  +.+...+.++|..
T Consensus       628 nv~~ckqLVe~Gaa-----vfAsTlSDmeTa~eKCee~--eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 NVPMCKQLVESGAA-----VFASTLSDMETAAEKCEEM--EEGYDQCSQYLYG  673 (752)
T ss_pred             chHHHHHHHhccce-----EEeeecccccchhhhcchh--hhhHHHHHHHHHH
Confidence            99999999999983     2334556788998877543  5677788888764

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.37  E-value=2.3e-12  Score=135.49  Aligned_cols=86  Identities=31%  Similarity=0.357  Sum_probs=56.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHh
Q 012836          114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW  193 (455)
Q Consensus       114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~  193 (455)
                      .|+.|+..|+.+.++.|++. +.+++..|.+|+||||+|+.+|+.+++++|+++|+++      +.+|.+|+||||+|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv------n~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP------TLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHH
Confidence            45666666666666666664 5666666666666666666666666666666666655      6666666666666666


Q ss_pred             cCChHHHHHHHhc
Q 012836          194 KRECQVVELLLSH  206 (455)
Q Consensus       194 ~~~~~iv~~Ll~~  206 (455)
                      .++.+++++|+++
T Consensus       158 ~g~~~iv~~Ll~~  170 (664)
T PTZ00322        158 NGFREVVQLLSRH  170 (664)
T ss_pred             CCcHHHHHHHHhC
Confidence            6666666666666

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.35  E-value=1.9e-12  Score=89.70  Aligned_cols=54  Identities=33%  Similarity=0.553  Sum_probs=35.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836          145 RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL  204 (455)
Q Consensus       145 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  204 (455)
                      |+||||+|++.|+.+++++|++.|.++      |.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di------n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI------NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT------T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567777777777777777777776665      667777777777777777777777764

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.35  E-value=2.2e-12  Score=89.34  Aligned_cols=52  Identities=37%  Similarity=0.639  Sum_probs=19.9

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHH
Q 012836           44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGL   96 (455)
Q Consensus        44 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~L   96 (455)
                      .||||.|+..|+.+++++|++.+.+ ++.+|.+|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            3444444444444444444444433 233344444444444444444444444

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.35  E-value=8.2e-13  Score=92.03  Aligned_cols=48  Identities=44%  Similarity=0.595  Sum_probs=27.7

Q ss_pred             ccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836          177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       177 ~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a  230 (455)
                      ++.+|..|+||||+|+..|+.+++++|++.|+      +++.+|.+|+||+|+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~------d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA------DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT--------TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC------CCCCCcCCCCCHHHhC
Confidence            37788888888888888888888888887777      7888888888888876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=6.8e-12  Score=131.95  Aligned_cols=86  Identities=28%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHH
Q 012836           80 PMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE  159 (455)
Q Consensus        80 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~  159 (455)
                      .|+.|+..|+.++++.|++.++++ +.+|.+|.||||+|+..|+.+++++|++. |.+++..|.+|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            355666666666666666666665 55566666666666666666666666665 5666666666666666666666666


Q ss_pred             HHHHHHHH
Q 012836          160 VVRALVDW  167 (455)
Q Consensus       160 ~v~~Ll~~  167 (455)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            66666665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1.6e-11  Score=109.42  Aligned_cols=123  Identities=22%  Similarity=0.259  Sum_probs=113.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG  122 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  122 (455)
                      -+.||..++..|+.+-...|++...+ ++.+|..|.|||..|+..|+.++|+.|++.++++...++..+.||||+|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            56899999999999999999987655 68889999999999999999999999999999997788888999999999999


Q ss_pred             CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHH
Q 012836          123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW  167 (455)
Q Consensus       123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  167 (455)
                      +.++.+.|++. |+.....+.-|+|+-..|+--|+.++|..+-++
T Consensus        91 n~dvcrlllda-Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDA-GARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhc-cCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999998 888999999999999999999999999877544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.29  E-value=2.6e-12  Score=89.50  Aligned_cols=55  Identities=36%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             HHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHH
Q 012836          131 LSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA  191 (455)
Q Consensus       131 l~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A  191 (455)
                      |++.+.+++..|..|+||||+|+..|+.+++++|++.|.++      +.+|.+|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~------~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP------NAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T------T---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC------CCCcCCCCCHHHhC
Confidence            34333556666666666666666666666666666666555      66666666666665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.92  E-value=5.2e-09  Score=101.30  Aligned_cols=122  Identities=22%  Similarity=0.293  Sum_probs=105.2

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-cchhhhcCCCCcHHHHHHHc
Q 012836            9 DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKP-DFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      ...+..|+..+|+-.++..-..+........  ...|.||+|+..|+-|+|++|++++| ++++..|..|.|+||-|+..
T Consensus       867 seeil~av~~~D~~klqE~h~~gg~ll~~~~--~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNGGSLLIQGP--DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ  944 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcCCceEeeCc--chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh
Confidence            3448899999998888887777776665543  36899999999999999999999986 56677789999999999999


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHh
Q 012836           88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA  133 (455)
Q Consensus        88 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  133 (455)
                      ++-.++++|++.|+++ ...|..|.||-.-|-..|+.++..+|-++
T Consensus       945 ~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999998 77899999999999999999999887765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.85  E-value=1.9e-09  Score=108.73  Aligned_cols=86  Identities=31%  Similarity=0.398  Sum_probs=42.0

Q ss_pred             hcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccC-CCCCcHHHHHHhcCChHHHHHHHhcCCCCC
Q 012836          133 AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD-KQGNTALHLATWKRECQVVELLLSHGANAS  211 (455)
Q Consensus       133 ~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~  211 (455)
                      .|+...+.+|..|+|+||+|+..+..+++++|+++|.++      +.+| +.|.||||-|...|+++++-+||++|+   
T Consensus        40 ~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv------~vqD~ESG~taLHRaiyyG~idca~lLL~~g~---  110 (1267)
T KOG0783|consen   40 SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV------FVQDEESGYTALHRAIYYGNIDCASLLLSKGR---  110 (1267)
T ss_pred             hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee------eeccccccchHhhHhhhhchHHHHHHHHhcCC---
Confidence            333444444455555555555555555555555554444      3333 344555555555555555555555544   


Q ss_pred             CCccccccCCCCCCHHHHH
Q 012836          212 GGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       212 ~~v~~~~~n~~g~t~l~~a  230 (455)
                         .+.++|++|..||+..
T Consensus       111 ---SL~i~Dkeglsplq~~  126 (1267)
T KOG0783|consen  111 ---SLRIKDKEGLSPLQFL  126 (1267)
T ss_pred             ---ceEEecccCCCHHHHH
Confidence               4445555555555544

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.80  E-value=5.6e-09  Score=99.23  Aligned_cols=92  Identities=26%  Similarity=0.265  Sum_probs=72.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      .++..++.+|+..|++..++.+.-.+.++ ..+|.+.+|+||.||..|+.+++++|++.+..+++.+|+.|+|||.-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34556778888888888888777777777 77788888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHH
Q 012836          155 NNQFEVVRALVDW  167 (455)
Q Consensus       155 ~~~~~~v~~Ll~~  167 (455)
                      .++.+++++|-+.
T Consensus       583 F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKHKEVVKLLEEA  595 (622)
T ss_pred             cCcHHHHHHHHHH
Confidence            8888888777653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=1.2e-08  Score=103.07  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=84.4

Q ss_pred             cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHH
Q 012836           18 TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLM   97 (455)
Q Consensus        18 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll   97 (455)
                      .+..+.++-++.+.........+.-|+|+||+|+..|..+++++|+++|.++.-+....|+||||.|...|+++++..||
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            34444566666654443344444459999999999999999999999998876666678999999999999999999999


Q ss_pred             hcCccccccCCCCCCCHHHHHHH
Q 012836           98 KFDQKLCHLQGPERKTPLHFAAI  120 (455)
Q Consensus        98 ~~~~~~~~~~d~~g~tpLh~A~~  120 (455)
                      .+|..+ .++|++|.+||..-++
T Consensus       107 ~~g~SL-~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  107 SKGRSL-RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hcCCce-EEecccCCCHHHHHhh
Confidence            999998 9999999999998776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.65  E-value=1e-07  Score=92.48  Aligned_cols=119  Identities=23%  Similarity=0.213  Sum_probs=98.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcc-ccccccCCCcHHHHHHHcCCHH
Q 012836           81 MHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGEC-AEDVSVQRETVLHLAVKNNQFE  159 (455)
Q Consensus        81 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~Lh~A~~~~~~~  159 (455)
                      +-.|+..++.--++.....|.++ -.++.+..+.||+|++.|+-|+|+++|++.|.. .+..|..|+|+||.|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            34556666655555666667777 678888999999999999999999999986643 4667889999999999999999


Q ss_pred             HHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhc
Q 012836          160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH  206 (455)
Q Consensus       160 ~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  206 (455)
                      ++++|++.|+..      ...|..|.||-.-|-+.|+.+...+|-++
T Consensus       949 vc~~lvdagasl------~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASL------RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhh------eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999988876      67899999999999999999999888654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.57  E-value=7.2e-08  Score=57.26  Aligned_cols=26  Identities=50%  Similarity=0.767  Sum_probs=24.3

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          183 QGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       183 ~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      +|+||||+|+..|+.+++++|+++|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            58999999999999999999999998

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.56  E-value=8.8e-08  Score=58.56  Aligned_cols=33  Identities=45%  Similarity=0.751  Sum_probs=29.7

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCC
Q 012836          183 QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNH  221 (455)
Q Consensus       183 ~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~  221 (455)
                      +|+||||+|+..|+.+++++|+++|+      +++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga------~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA------DINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS------CTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC------CCCCCCC
Confidence            58999999999999999999999999      7777764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.56  E-value=1.2e-07  Score=91.88  Aligned_cols=90  Identities=23%  Similarity=0.396  Sum_probs=63.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCC
Q 012836           10 RRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQ   89 (455)
Q Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~   89 (455)
                      .+||.++...+.+.+...+...........+..|+||||+|+..|+.+.++.|+..+++ ...+|.+||+|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCC
Confidence            34778888777777776555443322233333478888888888888888888888776 46667888888888888888


Q ss_pred             HHHHHHHHhcC
Q 012836           90 IDVVRGLMKFD  100 (455)
Q Consensus        90 ~~iv~~Ll~~~  100 (455)
                      .+++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            87777777654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.56  E-value=6.8e-08  Score=92.02  Aligned_cols=95  Identities=24%  Similarity=0.271  Sum_probs=82.2

Q ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCc
Q 012836          107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT  186 (455)
Q Consensus       107 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T  186 (455)
                      ++.++..++.+|++.|.+..++-+.-. +.+.+..|.+.+|+||+|+..|+.+++++|++.-.     ...+.+|..|+|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~k-----v~~~~kDRw~rt  575 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACK-----VDPDPKDRWGRT  575 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHc-----CCCChhhccCCC
Confidence            344566799999999999999888876 88999999999999999999999999999997422     223889999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcC
Q 012836          187 ALHLATWKRECQVVELLLSHG  207 (455)
Q Consensus       187 ~Lh~A~~~~~~~iv~~Ll~~g  207 (455)
                      ||.-|...++.+++++|-+.-
T Consensus       576 PlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  576 PLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cchHhHhcCcHHHHHHHHHHh
Confidence            999999999999999997653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.55  E-value=2.1e-07  Score=89.13  Aligned_cols=86  Identities=29%  Similarity=0.389  Sum_probs=68.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhhcccccccccC-CCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCH
Q 012836          148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD-KQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTA  226 (455)
Q Consensus       148 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d-~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~  226 (455)
                      -||-.++.|+.+..--|+..|++.      |..+ +.|+||||.|++.|+..-+++|+-+|+      |++..|.+|.||
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~------N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA------D~~a~d~~GmtP  203 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQA------NFFHPEKGNTPLHVAAKAGQILQAELLAVYGA------DPGAQDSSGMTP  203 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHccccc------CCCCcccCCchhHHHHhccchhhhhHHhhccC------CCCCCCCCCCcH
Confidence            488888899988888888888887      5544 678899999999999988999988888      788899999999


Q ss_pred             HHHHhhCCCCcCchhHHHHHHHh
Q 012836          227 LDVLLSFPSEAGDREIEEIFWSA  249 (455)
Q Consensus       227 l~~a~~~~~~~~~~~i~~~L~~~  249 (455)
                      +++|.    ..++.++.+-|.+.
T Consensus       204 ~~~AR----~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  204 VDYAR----QGGHHELAERLVEI  222 (669)
T ss_pred             HHHHH----hcCchHHHHHHHHH
Confidence            99983    45666666555543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.50  E-value=4.4e-07  Score=88.55  Aligned_cols=96  Identities=27%  Similarity=0.265  Sum_probs=80.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHH
Q 012836          148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL  227 (455)
Q Consensus       148 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l  227 (455)
                      -|.-|+...+...+-+|+.+|...  +..-...+.+|+|+||+|+..|+..+.++|+.+|+      |+.++|..|+|+|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~--e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~------dv~~rda~g~t~l  698 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSRE--EVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGV------DVMARDAHGRTAL  698 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCch--hhhccccCCCCcchhhhhhhhcchhHHHHHHHhCc------cceecccCCchhh
Confidence            356677777888888999988654  22224567889999999999999999999999998      8999999999999


Q ss_pred             HHHhhCCCCcCchhHHHHHHHhcccccc
Q 012836          228 DVLLSFPSEAGDREIEEIFWSAGAMRMR  255 (455)
Q Consensus       228 ~~a~~~~~~~~~~~i~~~L~~~ga~~~~  255 (455)
                      .+|    ...+.++++++|+++|.....
T Consensus       699 ~ya----r~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  699 FYA----RQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             hhH----hhcccHHHHHHHHHcCCCccc
Confidence            999    466899999999999986544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.49  E-value=3e-07  Score=89.21  Aligned_cols=90  Identities=22%  Similarity=0.344  Sum_probs=76.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHH-cCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC
Q 012836           45 NPLHVASAYGHVDFVKEIIR-LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR  123 (455)
Q Consensus        45 t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  123 (455)
                      -|||.++.....+-....+. .-...+...|..|.||||+|+..|+.+.++.|+..+++. ..++++|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            45999998887765555443 334456788999999999999999999999999999998 8899999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 012836          124 VDVVSEMLSAYG  135 (455)
Q Consensus       124 ~~~v~~Ll~~~~  135 (455)
                      .+++..++.++.
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            999999998743

>PF13606 Ank_3: Ankyrin repeat

Probab=98.43  E-value=2.6e-07  Score=54.85  Aligned_cols=27  Identities=33%  Similarity=0.764  Sum_probs=16.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCccc
Q 012836           77 GFSPMHMASANGQIDVVRGLMKFDQKL  103 (455)
Q Consensus        77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~  103 (455)
                      |+||||+||+.|+.+++++|+++++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            556666666666666666666655543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.41  E-value=1e-06  Score=84.58  Aligned_cols=86  Identities=20%  Similarity=0.304  Sum_probs=57.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHH
Q 012836           46 PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVD  125 (455)
Q Consensus        46 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~  125 (455)
                      -||..++.|+.+..-.|+..|++........|.||||.|+..|+..-+++|+-.|+++ ...|.+|+||+.+|-..||-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCchH
Confidence            3666777777776666666666543344455677777777777777777777777776 666777777777777777766


Q ss_pred             HHHHHHH
Q 012836          126 VVSEMLS  132 (455)
Q Consensus       126 ~v~~Ll~  132 (455)
                      +.+-|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            6655554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.37  E-value=5.5e-07  Score=54.98  Aligned_cols=27  Identities=33%  Similarity=0.650  Sum_probs=14.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCccc
Q 012836           77 GFSPMHMASANGQIDVVRGLMKFDQKL  103 (455)
Q Consensus        77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~  103 (455)
                      |+||||+|+..|+.+++++|+++++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            455555555555555555555555444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.29  E-value=2.6e-06  Score=83.30  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=39.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCc--ccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcC
Q 012836           11 RLIAAALTGDVQTLQQLFVENPL--ILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANG   88 (455)
Q Consensus        11 ~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g   88 (455)
                      .|..|+...|+..+..||.++..  ++.......|.|+||+||..|+..+.+.|+-.+.+ +..+|..|+|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhcc
Confidence            34444444444444444444322  12222222344444444444444444444433333 3344444444444444444


Q ss_pred             CHHHHHHHHhcC
Q 012836           89 QIDVVRGLMKFD  100 (455)
Q Consensus        89 ~~~iv~~Ll~~~  100 (455)
                      ..+++..|+.+|
T Consensus       706 sqec~d~llq~g  717 (749)
T KOG0705|consen  706 SQECIDVLLQYG  717 (749)
T ss_pred             cHHHHHHHHHcC
Confidence            444444444443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.22  E-value=5.4e-06  Score=85.26  Aligned_cols=124  Identities=16%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCc--ccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPL--ILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHM   83 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   83 (455)
                      ..++-....|+.+||...|+..+++...  .+..+.+.-|.++||.|+.+.+.|++++|+++.-..        ..+|-+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHH
Confidence            3456678899999999999999997655  444454445999999999999999999999886442        358999


Q ss_pred             HHHcCCHHHHHHHHhcCccc---------cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccc
Q 012836           84 ASANGQIDVVRGLMKFDQKL---------CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECA  138 (455)
Q Consensus        84 Aa~~g~~~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~  138 (455)
                      |+..|..++|+.++.+....         ....-..+.|||.+||..++.|+++.|+.+ +.++
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g~~i  157 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-GHCI  157 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-CCCC
Confidence            99999999999999864332         112223467999999999999999999998 4443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.11  E-value=2.5e-06  Score=89.41  Aligned_cols=133  Identities=17%  Similarity=0.192  Sum_probs=93.5

Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHH-HhhhhcccccccccCCCC
Q 012836          106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD-WIRDVKKENILNMKDKQG  184 (455)
Q Consensus       106 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~d~~G  184 (455)
                      ...-.|++.+|+++..++.-+++.+++-.+......|.+|...+|+++.. ..+..-+++. .|.      -++.+|.+|
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~l-g~ewA~ll~~~~~~------ai~i~D~~G  641 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAAL-GYEWAFLPISADGV------AIDIRDRNG  641 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhc-CCceeEEEEeeccc------ccccccCCC
Confidence            34456788888888888888888888753445556677777888884444 4444433332 222      248888888


Q ss_pred             CcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHh
Q 012836          185 NTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSA  249 (455)
Q Consensus       185 ~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~  249 (455)
                      +||||+|+..|+..++..|++.|+.+....|++...-.|.|+-++|.    ..++..+-.+|.+.
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~----s~g~~gia~~lse~  702 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR----ANGHKGIAGYLSEK  702 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh----cccccchHHHHhhh
Confidence            99999998888888888888888876656666666667888888884    45666666666654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.11  E-value=8.6e-06  Score=83.79  Aligned_cols=128  Identities=20%  Similarity=0.143  Sum_probs=67.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCc---chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHH
Q 012836           44 GNPLHVASAYGHVDFVKEIIRLKPD---FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI  120 (455)
Q Consensus        44 ~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~  120 (455)
                      +--...|+..|+.-.|+.+++....   ..+..|.-|.++|+.|..+.|.+++++|+++....        ..+|.+|+.
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~   97 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIA   97 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHH
Confidence            3345556666666666666654322   13444555666666666666666666665543222        235555666


Q ss_pred             hCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHH
Q 012836          121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV  200 (455)
Q Consensus       121 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv  200 (455)
                      .|..++++.++.+ +.....        ++.               .+..      -...-..+-|||.+||..++.||+
T Consensus        98 ~~~v~~VE~ll~~-~~~~~~--------~~~---------------~~d~------~~~~ft~ditPliLAAh~NnyEil  147 (822)
T KOG3609|consen   98 VGSVPLVELLLVH-FVDAPY--------LER---------------SGDA------NSPHFTPDITPLMLAAHLNNFEIL  147 (822)
T ss_pred             HHHHHHHHHHHhc-ccccch--------hcc---------------cccc------CcccCCCCccHHHHHHHhcchHHH
Confidence            6666666555554 111110        000               0000      011223455788888888888888


Q ss_pred             HHHHhcCCC
Q 012836          201 ELLLSHGAN  209 (455)
Q Consensus       201 ~~Ll~~ga~  209 (455)
                      ++|+++|+.
T Consensus       148 ~~Ll~kg~~  156 (822)
T KOG3609|consen  148 QCLLTRGHC  156 (822)
T ss_pred             HHHHHcCCC
Confidence            888877775

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.09  E-value=3e-06  Score=89.34  Aligned_cols=79  Identities=33%  Similarity=0.380  Sum_probs=74.5

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCC
Q 012836          143 VQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS  222 (455)
Q Consensus       143 ~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~  222 (455)
                      ..|.|+||.|+..+..-++++|+++|+++      |.+|..|+||||.+...|+...+..|+++|+      +.++.+.+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v------n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a------~~~a~~~~  721 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV------NALDSKGRTPLHHATASGHTSIACLLLKRGA------DPNAFDPD  721 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc------hhhhccCCCcchhhhhhcccchhhhhccccc------cccccCcc
Confidence            36789999999999999999999999987      9999999999999999999999999999999      88999999


Q ss_pred             CCCHHHHHhhC
Q 012836          223 GLTALDVLLSF  233 (455)
Q Consensus       223 g~t~l~~a~~~  233 (455)
                      |++|+++|...
T Consensus       722 ~~~~l~~a~~~  732 (785)
T KOG0521|consen  722 GKLPLDIAMEA  732 (785)
T ss_pred             CcchhhHHhhh
Confidence            99999999754

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.01  E-value=5.1e-06  Score=87.23  Aligned_cols=134  Identities=16%  Similarity=0.069  Sum_probs=103.4

Q ss_pred             hhhcCCCCcHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHH
Q 012836           71 KEVNQDGFSPMHMASANGQIDVVRGLMKF-DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVL  149 (455)
Q Consensus        71 ~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  149 (455)
                      ....-.|++-+|+++..++...++.+++. +... ...|.+|..-+|+ |..++.+..-.++.-.+..++.+|.+|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence            34456788999999999999999888886 3332 5567777778888 5566777777777767888889999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhc
Q 012836          150 HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH  206 (455)
Q Consensus       150 h~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  206 (455)
                      |+|+..|+..++..|++.|++....-.....+..|.|+-.+|..+|+..+..+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999988877643333344556788999999988888887777654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.91  E-value=5.1e-05  Score=70.90  Aligned_cols=74  Identities=24%  Similarity=0.280  Sum_probs=56.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        45 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      --|..||+.|+.+.|+.|++.|-+ ++.+|....+||.+|+..||.++|++|+++|+-. ..-.-+|.-+ |+++.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhh
Confidence            347888999999999999997766 6788888899999999999999999999988765 4344456555 344443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.88  E-value=4e-05  Score=71.58  Aligned_cols=124  Identities=21%  Similarity=0.138  Sum_probs=78.6

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccC-CCCCcHHHH
Q 012836          112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD-KQGNTALHL  190 (455)
Q Consensus       112 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d-~~G~T~Lh~  190 (455)
                      .--|..||+.|..+.++.|++ .|.++|.+|+...+||.+|+..|+..++++|+++|+-.       .+| .+|.- -|+
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-------~rdtf~G~R-C~Y  107 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-------SRDTFDGDR-CHY  107 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-------cccccCcch-hhh
Confidence            345788999999999999998 48889999999999999999999999999999988754       333 34443 445


Q ss_pred             HHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCC-CcCchhHHHHHHHhcccc
Q 012836          191 ATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPS-EAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       191 A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~-~~~~~~i~~~L~~~ga~~  253 (455)
                      ++.+  ..|=++|++...       ..+.|.+.--+-|+-..... .-+...=+.++.+.|+.-
T Consensus       108 gaLn--d~IR~mllsydi-------~KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f  162 (516)
T KOG0511|consen  108 GALN--DRIRRMLLSYDI-------LKAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANF  162 (516)
T ss_pred             hhhh--HHHHHHHHHHHH-------HHHhhccCCcchHHHHHhhccccccccchHHHhhccccc
Confidence            5543  344456666532       22344444444444432211 112223345666666643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.76  E-value=3.8e-05  Score=81.21  Aligned_cols=88  Identities=22%  Similarity=0.322  Sum_probs=75.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      ..|.|+||.|+..|..-++++|++.++++ +..|..|++|+|.+...|+...+..++++ +++.+..+.+|.++|++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhccc-cccccccCccCcchhhHHhh
Confidence            35789999999999999999999999996 88999999999999999999999888886 88999999999999999988


Q ss_pred             cCCHHHHHHH
Q 012836          155 NNQFEVVRAL  164 (455)
Q Consensus       155 ~~~~~~v~~L  164 (455)
                      ..+.+++-++
T Consensus       732 ~~~~d~~~l~  741 (785)
T KOG0521|consen  732 AANADIVLLL  741 (785)
T ss_pred             hccccHHHHH
Confidence            7665555444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.63  E-value=0.00014  Score=61.84  Aligned_cols=65  Identities=12%  Similarity=0.153  Sum_probs=52.2

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhc
Q 012836           70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAY  134 (455)
Q Consensus        70 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  134 (455)
                      ++.+|..|||||++|+..|+.+.+.+|+.++...+...|..|.+.+.+|-+.|+.+++..|.+..
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            46678888888888888888888888888885545778888888888888888888888777763

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.59  E-value=0.00015  Score=61.65  Aligned_cols=64  Identities=20%  Similarity=0.055  Sum_probs=33.3

Q ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHHHh-hhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhc
Q 012836          137 CAEDVSVQRETVLHLAVKNNQFEVVRALVDWI-RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH  206 (455)
Q Consensus       137 ~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  206 (455)
                      ++|..|..|+|+|++|+..|+.+.+.+|+++| +.+      ...|..|++++.+|-+.|..++++.|-+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v------gv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV------GVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccc------cccccccchHHHHHHhcChHHHHHHHHHH
Confidence            34455555555555555555555555555554 333      44555555555555555555555555444

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.80  E-value=0.0025  Score=62.11  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=61.1

Q ss_pred             CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCC
Q 012836          156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPS  235 (455)
Q Consensus       156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~  235 (455)
                      .-...+++|.+++...+...-....|..--|+||+|+..|..+++.+||+.|+      |+..+|..|.||.+++     
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~------Dp~~kd~~Grtpy~ls-----  470 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC------DPSTKDGAGRTPYSLS-----  470 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC------CchhcccCCCCccccc-----
Confidence            34667788877766553333334455556799999999999999999999998      8899999999999987     


Q ss_pred             CcCchhHHHHHHH
Q 012836          236 EAGDREIEEIFWS  248 (455)
Q Consensus       236 ~~~~~~i~~~L~~  248 (455)
                        .+.++...++.
T Consensus       471 --~nkdVk~~F~a  481 (591)
T KOG2505|consen  471 --ANKDVKSIFIA  481 (591)
T ss_pred             --ccHHHHHHHHH
Confidence              35566666653

>smart00248 ANK ankyrin repeats

Probab=96.25  E-value=0.0071  Score=34.25  Aligned_cols=25  Identities=36%  Similarity=0.709  Sum_probs=13.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCc
Q 012836           77 GFSPMHMASANGQIDVVRGLMKFDQ  101 (455)
Q Consensus        77 g~tpLh~Aa~~g~~~iv~~Ll~~~~  101 (455)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4455555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.17  E-value=0.0088  Score=33.83  Aligned_cols=26  Identities=50%  Similarity=0.696  Sum_probs=21.3

Q ss_pred             CCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          183 QGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       183 ~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      +|.||+|+|+..++.++++.|++.|.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36788888888888888888888776

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.52  E-value=0.25  Score=43.75  Aligned_cols=121  Identities=18%  Similarity=0.276  Sum_probs=77.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHH-
Q 012836          114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT-  192 (455)
Q Consensus       114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~-  192 (455)
                      .|--|+...+.+-+..++..-        ..-.++|-+|..++..+++-+|+..-. ...++.....-  +---+.++. 
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f~-ft~~dv~~~~~--~~ydieY~LS  224 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKFN-FTKQDVASMEK--ELYDIEYLLS  224 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhcc-eecchhhhcCc--chhhHHHHHh
Confidence            455577777777766666431        123467888888888888888886421 11222222211  112233332 


Q ss_pred             -hcCChHHHHHHHhcCCCCCCCccccc---cCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          193 -WKRECQVVELLLSHGANASGGLEVNA---TNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       193 -~~~~~~iv~~Ll~~ga~~~~~v~~~~---~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                       ...+..+++.++++|.     +++|.   +-+.|.|-||-|+++    ++.+++.+|+++||.+.
T Consensus       225 ~h~a~~kvL~~Fi~~Gl-----v~vN~~F~~~NSGdtMLDNA~Ky----~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGL-----VDVNKKFQKVNSGDTMLDNAMKY----KNSEMIAFLLKYGAISG  281 (284)
T ss_pred             hcCCcHHHHHHHHhccc-----cccchhhhccCCcchHHHhHHhc----CcHHHHHHHHHcCcccc
Confidence             3346788999999986     35553   457899999999755    78899999999999554

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.46  E-value=0.073  Score=52.24  Aligned_cols=63  Identities=14%  Similarity=0.096  Sum_probs=40.2

Q ss_pred             HHHHHHHHHcCCcch-----hhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH
Q 012836           56 VDFVKEIIRLKPDFA-----KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA  119 (455)
Q Consensus        56 ~~~v~~Ll~~~~~~~-----~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  119 (455)
                      .+.+++|.+++.+..     ...+.--.|+||+|+..|+-++|.+||+.+.++ ..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            455666666553321     111233457777777777777777777777666 667777777777765

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.00  E-value=0.78  Score=39.47  Aligned_cols=44  Identities=14%  Similarity=0.211  Sum_probs=21.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836          149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL  204 (455)
Q Consensus       149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  204 (455)
                      |..|+..|-...+--.+++|.++      +.      ++|..|+..++.+++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~------~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNV------DI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcc------cH------HHHHHHHHhhHHHHHHHhh
Confidence            34455555555544444544443      22      4555555555555555444

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.42  E-value=1  Score=38.81  Aligned_cols=139  Identities=22%  Similarity=0.085  Sum_probs=89.2

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      +.-.|..|+..|-+.+++++-+.-...     ....++.+-.||+..+.|+|+++-+.-..      .+-.+-.-.|...
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~  114 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAK  114 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhc
Confidence            445678888889888888876643211     11256778899999999999998544321      1123456678888


Q ss_pred             CCHHHHH----HHHhcCccccccCCCC--CCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHH
Q 012836           88 GQIDVVR----GLMKFDQKLCHLQGPE--RKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV  161 (455)
Q Consensus        88 g~~~iv~----~Ll~~~~~~~~~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  161 (455)
                      .+.++..    .+.++.... ...|..  -..-|..|+..|-.+.+.+.++. |.+.+      .++|..|++.++..++
T Consensus       115 kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlky-gg~~~------~~vls~Av~ynhRkIL  186 (192)
T PF03158_consen  115 KDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKY-GGNVD------IIVLSQAVKYNHRKIL  186 (192)
T ss_pred             cchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHc-CCccc------HHHHHHHHHhhHHHHH
Confidence            8877632    222221111 000000  01245679999999999999987 43332      2899999999999999


Q ss_pred             HHHH
Q 012836          162 RALV  165 (455)
Q Consensus       162 ~~Ll  165 (455)
                      .+++
T Consensus       187 ~yfi  190 (192)
T PF03158_consen  187 DYFI  190 (192)
T ss_pred             HHhh
Confidence            8876

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.34  E-value=1  Score=39.97  Aligned_cols=125  Identities=21%  Similarity=0.205  Sum_probs=72.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCH
Q 012836           45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV  124 (455)
Q Consensus        45 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  124 (455)
                      -.|--|+..-+.+-+..++....+        -.++|-+|..++..+++.+|+.+-.-.  ..        ..|-.....
T Consensus       155 isledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft--~~--------dv~~~~~~~  216 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFT--KQ--------DVASMEKEL  216 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhccee--cc--------hhhhcCcch
Confidence            345666666666655555543322        235677777777777777777642110  01        112222223


Q ss_pred             HHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhh-hhcccccccccCCCCCcHHHHHHhcCChHHHHHH
Q 012836          125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIR-DVKKENILNMKDKQGNTALHLATWKRECQVVELL  203 (455)
Q Consensus       125 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~-~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  203 (455)
                      .=++++|+..+                    -+..++++.+++|- ++   .---.+-+.|.|.|.-|.+.++.+++.+|
T Consensus       217 ydieY~LS~h~--------------------a~~kvL~~Fi~~Glv~v---N~~F~~~NSGdtMLDNA~Ky~~~emi~~L  273 (284)
T PF06128_consen  217 YDIEYLLSEHS--------------------ASYKVLEYFINRGLVDV---NKKFQKVNSGDTMLDNAMKYKNSEMIAFL  273 (284)
T ss_pred             hhHHHHHhhcC--------------------CcHHHHHHHHhcccccc---chhhhccCCcchHHHhHHhcCcHHHHHHH
Confidence            34445554422                    23556777776652 11   11235668899999999999999999999


Q ss_pred             HhcCCCC
Q 012836          204 LSHGANA  210 (455)
Q Consensus       204 l~~ga~~  210 (455)
                      +++|+..
T Consensus       274 lk~GA~~  280 (284)
T PF06128_consen  274 LKYGAIS  280 (284)
T ss_pred             HHcCccc
Confidence            9999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.32  E-value=0.69  Score=33.98  Aligned_cols=48  Identities=10%  Similarity=0.107  Sum_probs=29.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhc
Q 012836           44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF   99 (455)
Q Consensus        44 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~   99 (455)
                      ...|..|+..|+.|+++.+++.+..  .      ...+..|+...+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--D------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--H------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3456677777777777777654311  1      2356777777777777777664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.17  E-value=0.9  Score=33.36  Aligned_cols=48  Identities=15%  Similarity=0.275  Sum_probs=37.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhc
Q 012836           79 SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAY  134 (455)
Q Consensus        79 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~  134 (455)
                      ..+..|+..|+.|+++.+++.+ ..       ....+..|+...+-+++++|++++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~-------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP-------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc-------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            4578899999999999888654 11       145688899999999999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	455
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-16
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-10
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
1uoh_A	226	Human Gankyrin Length = 226		1e-09
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		8e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		6e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		9e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		5e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		4e-04
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		4e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		4e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		5e-04
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		9e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 39  AFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
           A  +   PLH+A+  GHV+ V  ++  +   A  + + GF+P+H+A+  G++ V   L++
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 99  FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
            D    +  G    TPLH A     +D+V ++L   G      +    T LH+A K NQ 
Sbjct: 168 RDAH-PNAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225
Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
           EV R+L+ +      E++      QG T LHLA  +   ++V LLLS  AN + G     
Sbjct: 226 EVARSLLQYGGSANAESV------QGVTPLHLAAQEGHAEMVALLLSKQANGNLG----- 274
Query: 219 TNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
            N SGLT L ++    ++ G   + ++    G M
Sbjct: 275 -NKSGLTPLHLV----AQEGHVPVADVLIKHGVM 303

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 14/136 (10%)
Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
           +G +P+H+A+ NG ++VV+ L++    + + +    +TPLH AA  G ++VV  +L    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL---- 55
Query: 136 ECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT 192
           E   DV+ + +   T LHLA +N   EVV+ L++   DV      N KDK G T LHLA 
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAA 109
Query: 193 WKRECQVVELLLSHGA 208
                +VV+LLL  GA
Sbjct: 110 RNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 74/143 (51%), Gaps = 23/143 (16%)
Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWI 168
           +TPLH AA  G ++VV  +L    E   DV+ + +   T LHLA +N   EVV+ L++  
Sbjct: 3   RTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 169 RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
            DV      N KDK G T LHLA      +VV+LLL  GA      +VNA + +G T L 
Sbjct: 59  ADV------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLH 106
Query: 229 VLLSFPSEAGDREIEEIFWSAGA 251
           +     +  G  E+ ++   AGA
Sbjct: 107 L----AARNGHLEVVKLLLEAGA 125

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 24/166 (14%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM     + + +  +  TPLH AA +G +++V  +L A      DV+ 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNA 75
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
           + +   T LHLA +    E+V  L+    DV      N KDK G T LHLA  +   ++V
Sbjct: 76  KDKDGYTPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIV 129
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           E+LL  GA+      VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 130 EVLLKAGAD------VNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA +    E+V  L+    DV      N KDK G T LHLA  +   ++VE+LL  
Sbjct: 49  TPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPE 266
           GA+      VNA +  G T     L   +  G  EI E+   AGA          + + +
Sbjct: 103 GAD------VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA---------DVNAQD 143
Query: 267 PHGQTSVDNCIST 279
             G+T+ D  I  
Sbjct: 144 KFGKTAFDISIDN 156

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 79/165 (47%), Gaps = 22/165 (13%)
Query: 84  ASANGQIDVVRGLMK--FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV 141
           A+  GQ D VR LM    D       G    TPLH AA  G +++V E+L  YG      
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLG---HTPLHLAAKTGHLEIV-EVLLKYGADVNAW 76
Query: 142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201
                T LHLA  N   E+V  L+    DV      N KD +G T LHLA +    ++VE
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGADV------NAKDYEGFTPLHLAAYDGHLEIVE 130
Query: 202 LLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           +LL +GA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 131 VLLKYGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM       + +    KTPLH AAIKG +++V E+L  +G        
Sbjct: 21  AARAGQDDEVRILMANGAD-VNAEDDSGKTPLHLAAIKGHLEIV-EVLLKHGADVNAADK 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
             +T LHLA      E+V  L+    DV      N  D  G T LHLA      ++VE+L
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLKNGADV------NATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L +GA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 133 LKYGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 24/169 (14%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM     + + +  +  TPLH AA +G +++V  +L A      DV+ 
Sbjct: 9   AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNA 63
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
           + +   T LHLA +    E+V  L+    DV      N KDK G T LHLA  +   ++V
Sbjct: 64  KDKDGYTPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIV 117
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSA 249
           E+LL  GA+      VNA +  G T  D+ +    + G+ +I E+   A
Sbjct: 118 EVLLKAGAD------VNAQDKFGKTPFDLAI----DNGNEDIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA +    E+V  L+    DV      N KDK G T LHLA  +   ++VE+LL  
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           GA+      VNA +  G T     L   +  G  EI E+   AGA
Sbjct: 91  GAD------VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA 125

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 75  QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAY 134
           QD    +  A+A GQ D VR LM       +       TPLH AA  G++++V  +L   
Sbjct: 4   QDLGKKLLEAAAAGQDDEVRILMANGAD-VNATDDNGLTPLHLAAANGQLEIVEVLL--- 59
Query: 135 GECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
            +   DV+       T LHLA  +   E+V  L+    DV      N  D+ G T LHLA
Sbjct: 60  -KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV------NAYDRAGWTPLHLA 112
Query: 192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
               + ++VE+LL HGA      +VNA +  GLTA D+ ++     G  ++ EI 
Sbjct: 113 ALSGQLEIVEVLLKHGA------DVNAQDALGLTAFDISIN----QGQEDLAEIL 157

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM     + +    +  TPLH AA  G  ++V E+L  +G        
Sbjct: 21  AARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDT 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
              T LHLA  N   E+V  L+ +  DV      N +D  G T LHLA  +   ++VE+L
Sbjct: 79  DGWTPLHLAADNGHLEIVEVLLKYGADV------NAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L HGA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
           +N  D QG+T LHLA W    ++VE+LL HGA      +VNA +  G T     L   ++
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA------DVNARDTDGWTP----LHLAAD 89
Query: 237 AGDREIEEIFWSAGA-MRMRD-LTLSPIRSPEPHGQTSVDNCISTEANLRQPNDLMEYFK 294
            G  EI E+    GA +  +D   L+P+      G   +      E  L+   D+    K
Sbjct: 90  NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEI-----VEVLLKHGADVNAQDK 144
Query: 295 FKK 297
           F K
Sbjct: 145 FGK 147

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/169 (33%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE-CAEDVS 142
           A+ NG  D V+ L++    + +    + KTPLH AA  G  +VV  +LS   +  A+D  
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 143 VQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL 202
            +  T LHLA +N   EVV+ L+    D       N KD  G T LHLA      +VV+L
Sbjct: 70  GK--TPLHLAAENGHKEVVKLLLSQGADP------NAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 203 LLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           LLS GA+       N ++  G T LD       E G+ E+ ++    G 
Sbjct: 122 LLSQGADP------NTSDSDGRTPLD----LAREHGNEEVVKLLEKQGG 160

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM       +      +TPLH AA  G +++V E+L   G     V  
Sbjct: 9   AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDT 66
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
              T LHLA      E+V  L+ +  DV      N KD  G T L+LA +    ++VE+L
Sbjct: 67  NGTTPLHLAASLGHLEIVEVLLKYGADV------NAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L HGA      +VNA +  G TA D+ +      G+ ++ EI 
Sbjct: 121 LKHGA------DVNAQDKFGKTAFDISIDI----GNEDLAEIL 153

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+ NG  D V+ L++    + +    + +TPLH+AA +G  ++V  ++S   +     S 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
            R T LH A K    E+V+ L+    DV      N KD  G T LH A  +   ++V+LL
Sbjct: 70  GR-TPLHYAAKEGHKEIVKLLISKGADV------NAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           +S GA+      VN ++  G T LD       E G+ EI ++    G 
Sbjct: 123 ISKGAD------VNTSDSDGRTPLD----LAREHGNEEIVKLLEKQGG 160

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 82/169 (48%), Gaps = 24/169 (14%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM     + + +  +  TPLH AA +G +++V  +L A      DV+ 
Sbjct: 9   AARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA----GADVNA 63
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
           + +   T LHLA +    E+V  L+    DV      N KDK G T LHLA  +   ++V
Sbjct: 64  KDKDGYTPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIV 117
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSA 249
           E+LL  GA+      VNA +  G T  D+ +      G  +I E+   A
Sbjct: 118 EVLLKAGAD------VNAQDKFGKTPFDLAIR----EGHEDIAEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA +    E+V  L+    DV      N KDK G T LHLA  +   ++VE+LL  
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGADV------NAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           GA+      VNA +  G T     L   +  G  EI E+   AGA
Sbjct: 91  GAD------VNAKDKDGYTP----LHLAAREGHLEIVEVLLKAGA 125

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
           TPLH AA+ G +++V E+L  +G   +   V   T LHLA      E+V  L+ +  DV 
Sbjct: 49  TPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV- 106
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
                N  D  G+T LHLA  +   ++VE+LL +GA      +VNA +  G TA D+ + 
Sbjct: 107 -----NAFDMTGSTPLHLAADEGHLEIVEVLLKYGA------DVNAQDKFGKTAFDISID 155
Query: 233 FPSE 236
             +E
Sbjct: 156 NGNE 159

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM       +       TPLH AA  G +++V E+L  +G     + +
Sbjct: 21  AARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDI 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
              T LHLA      E+V  L+    DV      N  D  G+T LHLA      ++VE+L
Sbjct: 79  MGSTPLHLAALIGHLEIVEVLLKHGADV------NAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L HGA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM       +       TPLH AA  G +++V E+L  +G     + +
Sbjct: 21  AARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDI 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
              T LHLA      E+V  L+    DV      N  D  G+T LHLA      ++VE+L
Sbjct: 79  XGSTPLHLAALIGHLEIVEVLLKHGADV------NAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L HGA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM     + + +     TPLH AA  G +++V E+L   G     +  
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDF 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
              T LHLA K    E+V  L+ +  DV      N  D  G+T LHLA      ++VE+L
Sbjct: 79  SGSTPLHLAAKRGHLEIVEVLLKYGADV------NADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L +GA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 133 LKYGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK--FDQ 101
           G  L  A+  G  D V+ ++    D     + DG++P+H+A++NG +++V  L+K   D 
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
               L G    TPLH AA  G +++V E+L  +G           T LHLA K    E+V
Sbjct: 74  NASDLTGI---TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIV 129
Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
             L+    DV      N +DK G TA  ++       + E+L
Sbjct: 130 EVLLKHGADV------NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM     + +    +  TPLH AA  G +++V E+L   G       +
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDL 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
              T LHLA      E+V  L+    DV      N  D  G+T LHLA      ++VE+L
Sbjct: 79  TGITPLHLAAATGHLEIVEVLLKHGADV------NAYDNDGHTPLHLAAKYGHLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L HGA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 26/202 (12%)
Query: 16  ALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQ 75
           A +G ++ L++  + +   L T     +   LH A + GH + V+ +++L      + + 
Sbjct: 15  AYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD 72
Query: 76  DGFSPMHMASANGQIDVVRGLM-------KFDQKLCHLQGPERKTPLHFAAIKGRVDVVS 128
            G+SP+H+A++ G+ ++V+ L+         +Q  C        TPLH+AA K R ++  
Sbjct: 73  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--------TPLHYAASKNRHEIAV 124
Query: 129 EMLSAYGECAEDVSVQRE-TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
            +L   G    D     E T +H A      +++  L+ +          N++D +GNT 
Sbjct: 125 MLLE--GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST------NIQDTEGNTP 176
Query: 188 LHLATWKRECQVVELLLSHGAN 209
           LHLA  +   +  +LL+S GA+
Sbjct: 177 LHLACDEERVEEAKLLVSQGAS 198

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           G  L  A+  G+ D VK++I    D     + DG +P+H A+ NG  +VV+ L+     +
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
            + +  + +TPLH AA  G  +VV  ++S   +     S  R T LH A +N   EVV+ 
Sbjct: 64  -NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENGHKEVVKL 121
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
           L+    DV      N  D  G T L LA      +VV+LL   G 
Sbjct: 122 LISKGADV------NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+ NG  D V+ L++    + +    + +TPLH AA  G  +VV  ++S   +     S 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
            R T LH A +N   EVV+ L+    DV      N KD  G T LH A      +VV+LL
Sbjct: 70  GR-TPLHHAAENGHKEVVKLLISKGADV------NAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           +S GA      +VN ++  G T LD       E G+ E+ ++    G 
Sbjct: 123 ISKGA------DVNTSDSDGRTPLD----LAREHGNEEVVKLLEKQGG 160

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 26/202 (12%)
Query: 16  ALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQ 75
           A +G ++ L++  + +   L T     +   LH A + GH + V+ +++L      + + 
Sbjct: 14  AYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD 71
Query: 76  DGFSPMHMASANGQIDVVRGLM-------KFDQKLCHLQGPERKTPLHFAAIKGRVDVVS 128
            G+SP+H+A++ G+ ++V+ L+         +Q  C        TPLH+AA K R ++  
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC--------TPLHYAASKNRHEIAV 123
Query: 129 EMLSAYGECAEDVSVQRE-TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA 187
            +L   G    D     E T +H A      +++  L+ +          N++D +GNT 
Sbjct: 124 MLLE--GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST------NIQDTEGNTP 175
Query: 188 LHLATWKRECQVVELLLSHGAN 209
           LHLA  +   +  +LL+S GA+
Sbjct: 176 LHLACDEERVEEAKLLVSQGAS 197

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 84  ASANGQIDVVRGLMK--FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV 141
           A+ NG  D V+ L++   D       G   +TPLH+AA  G  ++V  +LS   +     
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDG---RTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201
           S  R T LH A +N   E+V+ L+    D       N KD  G T LH A      ++V+
Sbjct: 68  SDGR-TPLHYAAENGHKEIVKLLLSKGADP------NAKDSDGRTPLHYAAENGHKEIVK 120
Query: 202 LLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           LLLS GA+       N ++  G T LD       E G+ EI ++    G 
Sbjct: 121 LLLSKGADP------NTSDSDGRTPLD----LAREHGNEEIVKLLEKQGG 160

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 118/261 (45%), Gaps = 38/261 (14%)
Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAG---NPLHVASAYGHVDFVKEIIRLKPD 68
           L+ AA +G+ + L  L       L+    AS G    PLH+A+ Y  V  V+ +++   D
Sbjct: 28  LLEAARSGNEEKLMALLTP----LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 69  FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVS 128
              + ++ G  P+H A + G  +V   L+K      +     + TPLH AA K RV+V S
Sbjct: 84  VHAK-DKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 129 EMLS---------AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW-IRDVKKE---N 175
            +LS          +G+ A D++   E    L  +     +++A  +  +  VKK     
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201
Query: 176 ILNMKDKQGN-TALHLATW----KRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL 230
           I+N K  Q + TALH A      KR+ QV ELLL  GAN      VN  N   +T L V 
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRK-QVAELLLRKGAN------VNEKNKDFMTPLHV- 253
Query: 231 LSFPSEAGDREIEEIFWSAGA 251
               +E    ++ E+    GA
Sbjct: 254 ---AAERAHNDVMEVLHKHGA 271

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  GQ D VR LM  +    +       TPLH AA  G +++V E+L  +G   +   V
Sbjct: 21  AARAGQDDEVRILMA-NGADVNAADNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDV 78
Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
              T LHLA      E+V  L+    DV      N  D  G T LHLA      ++VE+L
Sbjct: 79  FGYTPLHLAAYWGHLEIVEVLLKNGADV------NAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L HGA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 133 LKHGA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHL V N   E++  L+ +  DV      N  DK G T LHLA ++   ++VE+LL +
Sbjct: 49  TPLHLVVNNGHLEIIEVLLKYAADV------NASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPE 266
           GA      +VNA ++ G T     L   +E G  EI E+    GA          + + +
Sbjct: 103 GA------DVNAMDYQGYTP----LHLAAEDGHLEIVEVLLKYGA---------DVNAQD 143
Query: 267 PHGQTSVDNCIST 279
             G+T+ D  I  
Sbjct: 144 KFGKTAFDISIDN 156

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
           TPLH AA  G +++V  +L    +   D S+   T LHLA      EVV  L+    DV 
Sbjct: 49  TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLEVVEVLLKNGADV- 106
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
                N  D  G T LHLA      ++VE+LL HGA      +VNA +  G TA D+ + 
Sbjct: 107 -----NANDHNGFTPLHLAANIGHLEIVEVLLKHGA------DVNAQDKFGKTAFDISI- 154
Query: 233 FPSEAGDREIEEIF 246
              + G+ ++ EI 
Sbjct: 155 ---DNGNEDLAEIL 165

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
           ++   +++PLH AA  G VD+   ML   G   +  S  + T L  A +NN  E V+ L+
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG-----ANASGGLE--VNA 218
                 K   +++ KD +G+T LHLA  K   +VV+ LLS+G         GG    + A
Sbjct: 65  ------KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 219 TNHSGLTALDVLLSFPSEAGDREIEE---IFWSA--GAMRMRDLTLS 260
           T +  +  + +LLS  S+   R+ EE   + W+A  G + + ++ L+
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           LH A + GH + V+ +++L      + +  G+SP+H+A++ G+ ++V+ L+    K  H+
Sbjct: 44  LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALL---VKGAHV 99
Query: 107 QGPERK--TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
               +   TPLH+AA K R ++   +L   G   +       T +H A      ++V  L
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
           + +          N++D +GNT LHLA  +   +  + L++ GA+
Sbjct: 159 LFYKAST------NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           LH A + GH + V+ +++L      + +  G+SP+H+A++ G  ++V+ L+    K  H+
Sbjct: 44  LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALL---VKGAHV 99
Query: 107 QGPERK--TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
               +   TPLH+AA K R ++   +L   G   +       T +H A      ++V  L
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
           + +          N++D +GNT LHLA  +   +  + L++ GA+
Sbjct: 159 LFYKAST------NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
           TPLH AA  G +++V E+L   G           T LHLA      E+V  L+    DV 
Sbjct: 49  TPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV- 106
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
                N KD  G T LHLA  +   ++VE+LL +GA      +VNA +  G TA D+ ++
Sbjct: 107 -----NAKDDNGITPLHLAANRGHLEIVEVLLKYGA------DVNAQDKFGKTAFDISIN 155
Query: 233 FPSEAGDREIEEIF 246
                G+ ++ EI 
Sbjct: 156 ----NGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 23/137 (16%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIR 169
           TPLH AA  G +++V  +L    +   DV+ +     T LHLA +    E+V  L+    
Sbjct: 49  TPLHLAAHFGHLEIVEVLL----KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 170 DVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
           DV      N  D  G T LHLA  +   ++VE+LL +GA      +VNA +  G TA D+
Sbjct: 105 DV------NASDSHGFTPLHLAAKRGHLEIVEVLLKNGA------DVNAQDKFGKTAFDI 152
Query: 230 LLSFPSEAGDREIEEIF 246
            +    + G+ ++ EI 
Sbjct: 153 SI----DNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA      E+V  L+    DV      N KD  G T LHLA  +   ++VE+LL +
Sbjct: 49  TPLHLAAHFGHLEIVEVLLKNGADV------NAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPE 266
           GA      +VNA++  G T     L   ++ G  EI E+    GA          + + +
Sbjct: 103 GA------DVNASDSHGFTP----LHLAAKRGHLEIVEVLLKNGA---------DVNAQD 143
Query: 267 PHGQTSVDNCIST 279
             G+T+ D  I  
Sbjct: 144 KFGKTAFDISIDN 156

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 74  NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
           +QDG SP+H+A+ +G+ D++  L+K        +  ++  PLH A  +G   VV  +L +
Sbjct: 83  SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 134 YGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW 193
             +      +   T L  A      E+V  L+     +      N  + +GNTALH A  
Sbjct: 142 NAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASI------NASNNKGNTALHEAVI 194
Query: 194 KRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
           ++   VVELLL HGA+      V   N    TA+D 
Sbjct: 195 EKHVFVVELLLLHGAS------VQVLNKRQRTAVDC 224

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH+A+  GH++ VK ++    D   + +++G +P+H+A+ NG ++VV+ L++    + +
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-N 62
Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSA 133
            +    +TPLH AA  G ++VV  +L A
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA +N   EVV+ L++   DV      N KDK G T LHLA      +VV+LLL  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           GA      +VNA + +G T L +     +  G  E+ ++   AGA
Sbjct: 58  GA------DVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 92

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 17/161 (10%)
Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           +H  +A G +D +KE +R   +   + ++ GF+P+  ASA G+I+ VR L+++     H+
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV---QRETVLHLAVKNNQFEVVRA 163
              ER++ L  A+  G  D+V  +L    E   D+++      T L  AV+ N  + V A
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL----ERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLAT---WKRECQVVE 201
           L+    D+  E         G T + LA    +++  QV+E
Sbjct: 121 LLARGADLTTEA------DSGYTPMDLAVALGYRKVQQVIE 155

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 69  FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE-------RKTPLHFAAIK 121
            A   ++DG +P+H+A   G +  V  L+   Q+     G E       R+TPLH A I 
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ----GGRELDIYNNLRQTPLHLAVIT 56
Query: 122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD 181
               VV  +++A G     +    +T  HLA ++     +RAL+D       +  L  ++
Sbjct: 57  TLPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARN 113
Query: 182 KQGNTALHLATWKRECQ-VVELLLSHGAN 209
             G TALH+A    ECQ  V+LLL  GA+
Sbjct: 114 YDGLTALHVAV-NTECQETVQLLLERGAD 141

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
           TPLH AA  G +++V E+L   G     V     T L LA      E+V  L+    DV 
Sbjct: 49  TPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV- 106
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS 232
                N  D +G+T LHLA      ++VE+LL +GA      +VNA +  G TA D+ + 
Sbjct: 107 -----NANDMEGHTPLHLAAMFGHLEIVEVLLKNGA------DVNAQDKFGKTAFDISI- 154
Query: 233 FPSEAGDREIEEIF 246
              + G+ ++ EI 
Sbjct: 155 ---DNGNEDLAEIL 165

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 37/209 (17%)
Query: 50  ASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP 109
           A+ YG  +  +E++    D  ++ +++  + +H A+ N +ID+V+  +     +  L G 
Sbjct: 16  ATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD 74
Query: 110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIR 169
              TPLH+A  +G + +V +++  YG     +  +  + +HLA +     +V  L+   +
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 170 DVKKEN----------------------------ILNMKDK-QGNTALHLATWKRECQVV 200
           DV   +                             +N+ DK   NTALH A       V+
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDV 229
            LLL  GAN      V+A N  G +ALD+
Sbjct: 194 SLLLEAGAN------VDAQNIKGESALDL 216

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 1   MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVK 60
           M S ++  DR+L+ AA  GDV+T+++L     +            PLH A+ Y  V  V+
Sbjct: 3   MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVE 61
Query: 61  EIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI 120
            +++   D   + ++ G  P+H A + G  +V   L+K    + ++    + TPLH AA 
Sbjct: 62  YLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAA 119
Query: 121 KGRVDVVSEML 131
           KG+ ++   +L
Sbjct: 120 KGKYEICKLLL 130

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  G ++ V+ L       C      + TPLHFAA   RV VV  +L    +   DV  
Sbjct: 17  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL----QHGADVHA 72
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
           + +     LH A     +EV   L      VK   ++N+ D    T LH A  K + ++ 
Sbjct: 73  KDKGGLVPLHNACSYGHYEVAELL------VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 126
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
           +LLL HGA+ +        N  G T LD++     + GD +I+++     A+
Sbjct: 127 KLLLQHGADPT------KKNRDGNTPLDLV-----KDGDTDIQDLLRGDAAL 167

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           +H  +A G +D +KE +R   +   + ++ GF+P+  ASA G+I+ VR L+++     H+
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV---QRETVLHLAVKNNQFEVVRA 163
              ER++ L  A+  G  D+V  +L    E   D+++      T L  AV  N  + V A
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL----ERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLAT---WKRECQVVE 201
           L+    D+  E         G T + LA    +++  QV+E
Sbjct: 121 LLARGADLTTEA------DSGYTPMDLAVALGYRKVQQVIE 155

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENIL 177
           AA  G+ D V  +L+A G           T LHLA      E+V  L+    DV      
Sbjct: 21  AARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV------ 73
Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
           N     G T LHLA W    ++VE+LL HGA      +VNA +  G TA D+ +    + 
Sbjct: 74  NATGNTGRTPLHLAAWADHLEIVEVLLKHGA------DVNAQDKFGKTAFDISI----DN 123
Query: 238 GDREIEEIF 246
           G+ ++ EI 
Sbjct: 124 GNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 17/129 (13%)
Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENIL 177
           AA  G+ D V  +L A G     +     T LHLA +    E+V  L+ +  DV      
Sbjct: 21  AARAGQDDEV-RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV------ 73
Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
           N +D  G T LHLA  +   ++VE+LL HGA      +VNA +  G TA D+ +    + 
Sbjct: 74  NAEDNFGITPLHLAAIRGHLEIVEVLLKHGA------DVNAQDKFGKTAFDISI----DN 123
Query: 238 GDREIEEIF 246
           G+ ++ EI 
Sbjct: 124 GNEDLAEIL 132

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 47  LHVASAYGHVDFVKEIIR-LKPDFAKEVNQDGF--SPMHMASANGQIDVVRGLMK--FDQ 101
           LH+A  +       E+IR +K D A    Q+    +P+H+A    Q ++   L+    D 
Sbjct: 12  LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 102 KLCHLQGPERKTPLHFAAIKG---RVDVVSEMLSA--YGECAEDVSVQRETVLHLAVKNN 156
           +L   +G    TPLH A  +G    V V+++  +        +  +    T LHLA  + 
Sbjct: 72  ELRDFRG---NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
              +V  LV    DV  +   N     G TALHLA   +   +V LLL  GA+      V
Sbjct: 129 YLGIVELLVSLGADVNAQEPCN-----GRTALHLAVDLQNPDLVSLLLKCGAD------V 177
Query: 217 NATNHSGLTALDVLLSFPS 235
           N   + G +   +    PS
Sbjct: 178 NRVTYQGYSPYQLTWGRPS 196

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  G ++ V+ L       C      + TPLHFAA   RV VV  +L    +   DV  
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL----QHGADVHA 70
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
           + +     LH A     +EV   L      VK   ++N+ D    T LH A  K + ++ 
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELL------VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
           +LLL HGA+ +        N  G T LD++     + GD +I+++     A+
Sbjct: 125 KLLLQHGADPT------KKNRDGNTPLDLV-----KDGDTDIQDLLRGDAAL 165

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 31/225 (13%)
Query: 47  LHVASAYGHVDFVKEIIR-LKPDFAKEVNQDGF--SPMHMASANGQIDVVRGLMK--FDQ 101
           LH+A  +       E+IR +K D A    Q+    +P+H+A    Q ++   L+    D 
Sbjct: 9   LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 102 KLCHLQGPERKTPLHFAAIKG---RVDVVSEMLSA--YGECAEDVSVQRETVLHLAVKNN 156
           +L   +G    TPLH A  +G    V V+++  +        +  +    T LHLA  + 
Sbjct: 69  ELRDFRG---NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 125
Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
              +V  LV    DV  +   N     G TALHLA   +   +V LLL  GA      +V
Sbjct: 126 YLGIVELLVSLGADVNAQEPCN-----GRTALHLAVDLQNPDLVSLLLKCGA------DV 174
Query: 217 NATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSP 261
           N   + G +   +    PS    +++       G + + +L + P
Sbjct: 175 NRVTYQGYSPYQLTWGRPSTRIQQQL-------GQLTLENLQMLP 212

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 24/172 (13%)
Query: 84  ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
           A+  G ++ V+ L       C      + TPLHFAA   RV VV  +L    +   DV  
Sbjct: 19  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL----QHGADVHA 74
Query: 144 QRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
           + +     LH A     +EV   L      VK   ++N+ D    T LH A  K + ++ 
Sbjct: 75  KDKGGLVPLHNACSYGHYEVAELL------VKHGAVVNVADLWKFTPLHEAAAKGKYEIC 128
Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
           +LLL HGA+ +        N  G T LD++     + GD +I+++     A+
Sbjct: 129 KLLLQHGADPT------KKNRDGNTPLDLV-----KDGDTDIQDLLRGDAAL 169

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENIL 177
           AA  G+ D V  +L A G        +  T LHLA   +  E+V  L+    DV      
Sbjct: 21  AARAGQDDEV-RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV------ 73
Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
           N  D  G+T LHLA      ++VE+LL HGA      +VNA +  G TA D+ +    + 
Sbjct: 74  NAHDNDGSTPLHLAALFGHLEIVEVLLKHGA------DVNAQDKFGKTAFDISI----DN 123
Query: 238 GDREIEEIF 246
           G+ ++ EI 
Sbjct: 124 GNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
           +N  D++GNT LHLA      ++VE+LL HGA      +VNA ++ G T L +   F   
Sbjct: 40  VNANDRKGNTPLHLAADYDHLEIVEVLLKHGA------DVNAHDNDGSTPLHLAALF--- 90
Query: 237 AGDREIEEIFWSAGA 251
            G  EI E+    GA
Sbjct: 91  -GHLEIVEVLLKHGA 104

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 105 HLQGP-ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
           H+ G  +  TPLH AA  G  + V ++LS  G      S    T LHLA KN   E+V+ 
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASG 212
           L+    DV      N + K GNT  HLA      ++V+LL + GA+ + 
Sbjct: 61  LLAKGADV------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A        V+E++  KP    + +QDG  P+H + +    ++   L+   + +  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 106 LQGPERK--TPLHFAAIKGRVDVVSEMLS-AYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
              P+    TP H A   G ++VV  +           ++ Q  T LHLAV    FEV +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
            L++    V+      +KDK     LH A      +++ELL   G +A     VN  +  
Sbjct: 125 FLIENGASVR------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-----VNWQDKQ 173
Query: 223 GLTAL 227
           G T L
Sbjct: 174 GWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A        V+E++  KP    + +QDG  P+H + +    ++   L+   + +  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 106 LQGPERK--TPLHFAAIKGRVDVVSEMLS-AYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
              P+    TP H A   G ++VV  +           ++ Q  T LHLAV    FEV +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
            L++    V+      +KDK     LH A      +++ELL   G +A     VN  +  
Sbjct: 125 FLIENGASVR------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-----VNWQDKQ 173
Query: 223 GLTAL 227
           G T L
Sbjct: 174 GWTPL 178

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA K    E+V  L+    DV      N +D  G T LHLA      ++VE+LL +
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADV------NARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           GA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 103 GA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA K    E+V  L+    DV      N  D  G T LHLA      ++VE+LL +
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADV------NASDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           GA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 103 GA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA  N+  E+V  L+    DV      N  D  G T LHL       ++VE+LL H
Sbjct: 49  TPLHLAAMNDHLEIVEVLLKNGADV------NAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           GA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 103 GA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 132

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A        V+E++  KP    + +QDG  P+H + +    ++   L+   + +  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 106 LQGPERK--TPLHFAAIKGRVDVVSEMLS-AYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
              P+    TP H A   G ++VV  +           ++ Q  T LHLAV    FEV +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
            L++    V+      +KDK     LH A      +++ELL   G +A     VN  +  
Sbjct: 125 FLIENGASVR------IKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-----VNWQDKQ 173
Query: 223 GLTAL 227
           G T L
Sbjct: 174 GWTPL 178

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA K    E+V  L+    DV      N  D  G T LHLA      ++VE+LL +
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADV------NASDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           GA      +VNA +  G TA D+ +    + G+ ++ EI 
Sbjct: 103 GA------DVNAQDKFGKTAFDISI----DNGNEDLAEIL 132

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 18/195 (9%)
Query: 79  SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECA 138
           SP+ +A+    +  +  L+KF+    H +G   +T LH AA+   ++    ++ A  E  
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 139 EDVSVQR----ETVLHLAVKNNQFEVVRALVDWIRDVKKE---NILNMKDKQ----GNTA 187
            +         +T LH+AV N    +VRAL+     V      ++ + +       G   
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFW 247
           L  A      ++V LL+ HGA      ++ A +  G T L +L+  P++    ++  +  
Sbjct: 125 LSFAACVGSEEIVRLLIEHGA------DIRAQDSLGNTVLHILILQPNKTFACQMYNLLL 178
Query: 248 SA-GAMRMRDLTLSP 261
           S  G   ++ L L P
Sbjct: 179 SYDGGDHLKSLELVP 193

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           LH+AS  G +  V+ +++   D     +  G++P+H A  +G + VV  L++  + L + 
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALVNT 71
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV 143
            G +  +PLH AA  G VD+V  +LS YG     V++
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLS-YGASRNAVNI 107

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
           +PLH+A  +GR  VV EML   G     ++   +T LHLA  +   ++V+ L+ +  D+ 
Sbjct: 41  SPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI- 98
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
                N  ++ GN  LH A +  + QV E L+++GA
Sbjct: 99  -----NAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
           +PLH+A  +GR  VV EML   G     ++   +T LHLA  +   ++V+ L+ +  D+ 
Sbjct: 36  SPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI- 93
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
                N  ++ GN  LH A +  + QV E L+++GA
Sbjct: 94  -----NAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 28  FVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN 87
            + NPL+       S  +P+H A+ +GH   ++ +I  +      +  D  SP+H A   
Sbjct: 47  LLSNPLMGDA---VSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLG 102
Query: 88  GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRET 147
           G +  V+ L+K   ++  +   +  TPL  A + G  D V+ +L          SVQ E+
Sbjct: 103 GHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQ------HGASVQPES 155
Query: 148 VL----HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
            L    H A +    E V +L+ +  ++      + K     T L+LA   ++   V+ L
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNI------DHKISHLGTPLYLACENQQRACVKKL 209
Query: 204 LSHGANASGG 213
           L  GA+ + G
Sbjct: 210 LESGADVNQG 219

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 15/104 (14%)
Query: 148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
           V+H A +  Q + ++ L+++  DV      N++D +GN  LHLA  +   +VVE L+ H 
Sbjct: 73  VIHDAARAGQLDTLQTLLEFQADV------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 208 ANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           A+      V   NH G TA D+   +    G  E+  +  + GA
Sbjct: 127 AS-----NVGHRNHKGDTACDLARLY----GRNEVVSLMQANGA 161

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           +P+H A+ +GH   ++ +I  +      +  D  SP+H A   G +  V+ L+K   ++ 
Sbjct: 5   SPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVL----HLAVKNNQFEV 160
            +   +  TPL  A + G  D V+ +L          SVQ E+ L    H A +    E 
Sbjct: 64  GVTA-DWHTPLFNACVSGSWDCVNLLLQ------HGASVQPESDLASPIHEAARRGHVEC 116
Query: 161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGG 213
           V +L+ +  ++      + K     T L+LA   ++   V+ LL  GA+ + G
Sbjct: 117 VNSLIAYGGNI------DHKISHLGTPLYLACENQQRACVKKLLESGADVNQG 163

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKE 174
           AA  G+ D V  +L A G    DV+ + E   T L+LA  +   E+V  L+    DV   
Sbjct: 21  AARAGQDDEV-RILMANGA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV--- 73
Query: 175 NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234
              N  D  G T LHLA +    ++ E+LL HGA      +VNA +  G TA D+ +   
Sbjct: 74  ---NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA------DVNAQDKFGKTAFDISIG-- 122
Query: 235 SEAGDREIEEIF 246
              G+ ++ EI 
Sbjct: 123 --NGNEDLAEIL 132

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 82  HMASANGQI-DVVRGLMKFDQKLCHLQG---PERKTPLHFAAIKGRVDVVSEMLSAYGEC 137
           HM   NG+I + ++     +Q L  L+       +TPL  A + G  + + +++  + + 
Sbjct: 3   HM-DKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61
Query: 138 AEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKREC 197
            ED  ++  T L  AVKNN+  +   L      + K + +N KD  G T L  +      
Sbjct: 62  -EDKDIEGSTALIWAVKNNRLGIAEKL------LSKGSNVNTKDFSGKTPLMWSIIFGYS 114
Query: 198 QVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA-MRMRD 256
           ++   LL HGAN      VN  N  G T L V     S+ G  EI +     GA +  RD
Sbjct: 115 EMSYFLLEHGAN------VNDRNLEGETPLIV----ASKYGRSEIVKKLLELGADISARD 164
Query: 257 LT 258
           LT
Sbjct: 165 LT 166

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
           +PLH AA  G       +L A         V R T LH+A       +V  L+    DV 
Sbjct: 36  SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
            +++L M      TALH AT     +VVELL+ +GA+
Sbjct: 95  AKDMLKM------TALHWATEHNHQEVVELLIKYGAD 125

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSE 236
           +N KDK G T LHLA  +   ++VE+LL  GA      +VNA +  G TA D+ +    +
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA------DVNAQDKFGKTAFDISI----D 77
Query: 237 AGDREIEEIFWSAG 250
            G+ ++ EI   A 
Sbjct: 78  NGNEDLAEILQKAA 91

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           +H  +A G + ++   I  + +     +++GF+P+  A+A+GQI VV  L++ +     L
Sbjct: 5   VHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQL 62
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS---VQRETVLHLAVKNNQFEVVRA 163
            G  R++ L  A  KG  D+V  +L    +C  DV+       T L  AV  N  + V+ 
Sbjct: 63  LGKGRESALSLACSKGYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 118
Query: 164 LVD 166
           L++
Sbjct: 119 LLE 121

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           +H  +A G + ++   I  + +     +++GF+P+  A+A+GQI VV  L++ +     L
Sbjct: 23  VHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQL 80
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS---VQRETVLHLAVKNNQFEVVRA 163
            G  R++ L  A  KG  D+V  +L    +C  DV+       T L  AV  N  + V+ 
Sbjct: 81  LGKGRESALSLACSKGYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 136
Query: 164 LVD 166
           L++
Sbjct: 137 LLE 139

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 140 DVSVQRETVLHLAVK-NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQ 198
           D     E VLHLAVK  NQ  +   LVD+I  ++    L+ K   GNTALH A    +  
Sbjct: 185 DAQAPEELVLHLAVKVANQASL--PLVDFI--IQNGGHLDAKAADGNTALHYAALYNQPD 240
Query: 199 VVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            ++LLL       G   V   N +G TALD+      +   +E EE+   A A
Sbjct: 241 CLKLLL------KGRALVGTVNEAGETALDI----ARKKHHKECEELLEQAQA 283

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           +H  +A G + ++   I  + +     +++GF+P+  A+A+GQI VV  L++ +     L
Sbjct: 7   VHQLAAQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQL 64
Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS---VQRETVLHLAVKNNQFEVVRA 163
            G  R++ L  A  KG  D+V  +L    +C  DV+       T L  AV  N  + V+ 
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 164 LVD 166
           L++
Sbjct: 121 LLE 123

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 107 QGPERKTPLHFAAIKGRVDVVSEML-SAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
           Q      PLH AA +G +  + E L +  G    D +    T L+ A      ++V  L 
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS--TALYWACHGGHKDIVEXLF 126
Query: 166 DWIRDVKKENI-LNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
                  + NI LN ++K G+TALH A WK    +V+LLL+ GA
Sbjct: 127 ------TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 140 DVSVQRETVLHLAVK-NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQ 198
           D     E VLHLAVK  NQ  +   LVD+I  ++    L+ K   GNTALH A    +  
Sbjct: 166 DAQAPEELVLHLAVKVANQASL--PLVDFI--IQNGGHLDAKAADGNTALHYAALYNQPD 221
Query: 199 VVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            ++LLL       G   V   N +G TALD+      +   +E EE+   A A
Sbjct: 222 CLKLLL------KGRALVGTVNEAGETALDI----ARKKHHKECEELLEQAQA 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	455
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-36
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-33
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-32
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-33
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-33
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-32
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-32
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-32
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-32
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-27
2rfa_A	232	Transient receptor potential cation channel subfa	4e-31
2rfa_A	232	Transient receptor potential cation channel subfa	8e-31
2rfa_A	232	Transient receptor potential cation channel subfa	4e-23
2rfa_A	232	Transient receptor potential cation channel subfa	4e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-30
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-29
2etb_A	256	Transient receptor potential cation channel subfam	9e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-29
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-06
2pnn_A	273	Transient receptor potential cation channel subfa	3e-25
2pnn_A	273	Transient receptor potential cation channel subfa	3e-25
2pnn_A	273	Transient receptor potential cation channel subfa	5e-18
2pnn_A	273	Transient receptor potential cation channel subfa	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-21
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-04

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (335), Expect = 6e-37
 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 34/190 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            +H  +A G +D +KE +R   +   + ++ GF+P+  ASA G+I+ VR L++       
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------- 57

Query: 106 LQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKN 155
             G  P        + L  A+  G  D+V  +L        D+++      T L  AV+ 
Sbjct: 58  -WGADPHILAKERESALSLASTGGYTDIV-GLLLERD--V-DINIYDWNGGTPLLYAVRG 112

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
           N  + V AL+      +  ++   +   G T + LA      +V +++ +H         
Sbjct: 113 NHVKCVEALLA-----RGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILK------ 160

Query: 216 VNATNHSGLT 225
           +  +N     
Sbjct: 161 LFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  110 bits (277), Expect = 1e-28
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 23/178 (12%)

Query: 77  GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE 136
               +H  +A G++D ++  ++    L +       TPL +A+  G ++ V   L  +G 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETV-RFLLEWG- 59

Query: 137 CAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW 193
            A D  +    RE+ L LA      ++V  L++     +  +I N+ D  G T L  A  
Sbjct: 60  -A-DPHILAKERESALSLASTGGYTDIVGLLLE-----RDVDI-NIYDWNGGTPLLYAVR 111

Query: 194 KRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
               + VE LL+ GA+      +     SG T +D         G R+++++  +   
Sbjct: 112 GNHVKCVEALLARGAD------LTTEADSGYTPMD----LAVALGYRKVQQVIENHIL 159

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (334), Expect = 3e-36
 Identities = 47/215 (21%), Positives = 80/215 (37%), Gaps = 24/215 (11%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            LH+A+ Y   D  K ++    D A   +  G +P+H A +     V + L++       
Sbjct: 28  ALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVR 162
            +  +  TPL  AA      ++ E L      A DV+      ++ LH A   N  +   
Sbjct: 87  ARMHDGTTPLILAARLAVEGML-EDLINSH--A-DVNAVDDLGKSALHWAAAVNNVDAAV 142

Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
            L+         N  +M++ +  T L LA  +   +  ++LL H AN       + T+H 
Sbjct: 143 VLLK-----NGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN------RDITDHM 190

Query: 223 GLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDL 257
                D       E    +I  +      +R   L
Sbjct: 191 DRLPRD----IAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (287), Expect = 1e-29
 Identities = 39/206 (18%), Positives = 73/206 (35%), Gaps = 33/206 (16%)

Query: 54  GHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH-----LQG 108
                + + I        + ++ G + +H+A+   + D  + L++            +Q 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE------ASADANIQD 55

Query: 109 PERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALV 165
              +TPLH A       V  ++L      A D+  +     T L LA +     ++  L+
Sbjct: 56  NMGRTPLHAAVSADAQGVF-QILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDLI 112

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
           +        ++ N  D  G +ALH A          +LL +GAN       +  N+   T
Sbjct: 113 N-----SHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREET 160

Query: 226 ALDVLLSFPSEAGDREIEEIFWSAGA 251
                L   +  G  E  ++     A
Sbjct: 161 P----LFLAAREGSYETAKVLLDHFA 182

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  137 bits (347), Expect = 4e-36
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH+A+    V+  + +++     A   +  G +P+H+A+  G  ++V  L+       +
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-N 272

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
           L      TPLH  A +G V V  ++L  +G   +  +    T LH+A      ++V+ L+
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVA-DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
                  + ++ N K K G + LH A  +    +V LLL +GA+       N  +  G T
Sbjct: 332 Q-----HQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS------PNEVSSDGTT 379

Query: 226 ALDV 229
            L +
Sbjct: 380 PLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  137 bits (347), Expect = 5e-36
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 19/206 (9%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLHVAS  GH+  VK +++         N    +P+HMA+  G  +V + L++   K+ +
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-N 74

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
            +  + +TPLH AA  G  ++V ++L          +    T LH+A +    E V AL+
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMV-KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
           +     K+ +      K+G T LH+A    + +V ELLL   A+       NA   +GLT
Sbjct: 134 E-----KEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH------PNAAGKNGLT 181

Query: 226 ALDVLLSFPSEAGDREIEEIFWSAGA 251
                L       + +I ++    G 
Sbjct: 182 P----LHVAVHHNNLDIVKLLLPRGG 203

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  135 bits (342), Expect = 2e-35
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 19/206 (9%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A+  GH + VK ++    +        G +P+H+A+  G ++ V  L++ +     
Sbjct: 83  PLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-A 140

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
               +  TPLH AA  G+V V  E+L               T LH+AV +N  ++V+ L+
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVA-ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
                 +  +  +     G T LH+A  + + +V   LL +G +       NA +  G+T
Sbjct: 200 P-----RGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS------ANAESVQGVT 247

Query: 226 ALDVLLSFPSEAGDREIEEIFWSAGA 251
            L       ++ G  E+  +  S  A
Sbjct: 248 PLH----LAAQEGHAEMVALLLSKQA 269

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  124 bits (313), Expect = 2e-31
 Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 12/200 (6%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH+A+  GH + V  ++  + +     N+ G +P+H+ +  G + V   L+K    +  
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-D 305

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
                  TPLH A+  G + +V + L  +       +    + LH A +    ++V  L+
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
                    +  N     G T L +A       V ++L            V  ++   ++
Sbjct: 365 K-----NGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE---TSFVLVSDKHRMS 415

Query: 226 ALDVLLSFPSEAGDREIEEI 245
             + +      + D   E I
Sbjct: 416 FPETVDEILDVSEDEGEELI 435

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  108 bits (273), Expect = 5e-26
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 28/185 (15%)

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH-----LQGPERKTPLHFAAIKGRVDV 126
              + G +P+H+AS  G + +V+ L++            +   + +TPLH AA  G  +V
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQ------RGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT 186
             + L          +   +T LH A +     +V+ L++        N  N+    G+T
Sbjct: 63  A-KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE-----NNANP-NLATTAGHT 115

Query: 187 ALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
            LH+A  +   + V  LL   A+             G T     L   ++ G   + E+ 
Sbjct: 116 PLHIAAREGHVETVLALLEKEAS------QACMTKKGFTP----LHVAAKYGKVRVAELL 165

Query: 247 WSAGA 251
               A
Sbjct: 166 LERDA 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
               + G T LH+A++     +V+ LL  GA+       N +N    T     L   + A
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGAS------PNVSNVKVETP----LHMAARA 57

Query: 238 GDREIEEIFWSAGA 251
           G  E+ +      A
Sbjct: 58  GHTEVAKYLLQNKA 71

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (332), Expect = 6e-36
 Identities = 41/210 (19%), Positives = 69/210 (32%), Gaps = 31/210 (14%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            +  A          E+   + D    +     +     ++ G+  ++            
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLIPSNY------VA 67

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVR 162
            Q      PLH AA +G +  +             V+       T L+ A      ++V 
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWL-RECLDNR--V-GVNGLDKAGSTALYWACHGGHKDIVE 123

Query: 163 ALVDWIRDVKKENI-LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNH 221
            L        + NI LN ++K G+TALH A WK    +V+LLL+ GA        +  N 
Sbjct: 124 MLFT------QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR------TDLRNI 171

Query: 222 SGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
               A D      + A    + +      A
Sbjct: 172 EKKLAFD----MATNAACASLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  120 bits (302), Expect = 1e-31
 Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 35/223 (15%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
           +  A  T + +T  +L++E   I++    +         ++ G    +            
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDT--NWWKGTSKGRTGLIPSNY------VA 67

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP-------ERKTPLHFAAIKGRV 124
           E  +   +P+H A+  G +  +R  +                      T L++A   G  
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLD--------NRVGVNGLDKAGSTALYWACHGGHK 119

Query: 125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG 184
           D+V  + +         +   +T LH A      ++V+ L+      K     ++++ + 
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-----KGART-DLRNIEK 173

Query: 185 NTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
             A  +AT      +++      A          +N       
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAV------RTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 93.8 bits (234), Expect = 3e-22
 Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 26/156 (16%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           NPLH A+  G++ +++E +  +      +++ G + ++ A   G  D+V  L        
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEML------FT 127

Query: 105 HL------QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKN 155
                   Q     T LH AA KG  D+V ++L A G  A    ++   ++    +A   
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIV-QLLLAKG--A-RTDLRNIEKKLAFDMATNA 183

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
               +++           + +  + + +       +
Sbjct: 184 ACASLLKKKQG------TDAVRTLSNAEDYLDDEDS 213

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  131 bits (333), Expect = 9e-36
 Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 24/209 (11%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            LH+A+ Y   D  K ++    D A   +  G +P+H A +     V + L++       
Sbjct: 60  ALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVR 162
            +  +  TPL  AA      ++ E L      A DV+      ++ LH A   N  +   
Sbjct: 119 ARMHDGTTPLILAARLAVEGML-EDLINSH--A-DVNAVDDLGKSALHWAAAVNNVDAAV 174

Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
            L+         N  +M++ +  T L LA  +   +  ++LL H AN       + T+H 
Sbjct: 175 VLLK-----NGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN------RDITDHM 222

Query: 223 GLTALDVLLSFPSEAGDREIEEIFWSAGA 251
                D+      E    +I  +      
Sbjct: 223 DRLPRDI----AQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  118 bits (298), Expect = 9e-31
 Identities = 45/227 (19%), Positives = 77/227 (33%), Gaps = 46/227 (20%)

Query: 46  PLHVASAYGHVDFV---------KEIIRL----KPDFAKEVNQDGFSPMHMASANGQIDV 92
           PL +AS  G                +I            + ++ G + +H+A+   + D 
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 93  VRGLMKFDQKLCH-----LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ--- 144
            + L      L       +Q    +TPLH A       V  ++L      A D+  +   
Sbjct: 73  AKRL------LEASADANIQDNMGRTPLHAAVSADAQGVF-QILIRNR--ATDLDARMHD 123

Query: 145 RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL 204
             T L LA +     ++  L++        ++ N  D  G +ALH A          +LL
Sbjct: 124 GTTPLILAARLAVEGMLEDLIN-----SHADV-NAVDDLGKSALHWAAAVNNVDAAVVLL 177

Query: 205 SHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            +GAN       +  N+   T     L   +  G  E  ++     A
Sbjct: 178 KNGAN------KDMQNNREETP----LFLAAREGSYETAKVLLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  114 bits (289), Expect = 1e-29
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 28/174 (16%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A +       + +IR +         DG +P+ +A+      ++  L+        
Sbjct: 93  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN------- 145

Query: 106 LQGPE-------RKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKN 155
               +        K+ LH+AA    VD    +L   G  A +  +Q    ET L LA + 
Sbjct: 146 -SHADVNAVDDLGKSALHWAAAVNNVDAA-VVLLKNG--A-NKDMQNNREETPLFLAARE 200

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
             +E  + L+D        N  ++ D        +A  +    +V LL     +
Sbjct: 201 GSYETAKVLLD-----HFANR-DITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.9 bits (219), Expect = 5e-20
 Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 38/181 (20%)

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEML 131
               DGF+P+ +AS +G                           +    +    V+    
Sbjct: 5   VRGPDGFTPLMIASCSG---------------------GGLETGNSEEEEDAPAVI-SDF 42

Query: 132 SAYGECAEDVSVQ-RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHL 190
              G    + + +  ET LHLA + ++ +  + L++        +  N++D  G T LH 
Sbjct: 43  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-----ASADA-NIQDNMGRTPLHA 96

Query: 191 ATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAG 250
           A       V ++L+ + A      +++A  H G T     L   +      + E   ++ 
Sbjct: 97  AVSADAQGVFQILIRNRAT-----DLDARMHDGTTP----LILAARLAVEGMLEDLINSH 147

Query: 251 A 251
           A
Sbjct: 148 A 148

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 23/90 (25%)

Query: 175 NILNMKDKQGNTALHLATWKRECQ-------------VVELLLSHGANASGGLEVNATNH 221
           ++ N++   G T L +A+                   V+   +  GA+       N T+ 
Sbjct: 2   DV-NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-----NQTDR 55

Query: 222 SGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           +G TA    L   +     +  +    A A
Sbjct: 56  TGETA----LHLAARYSRSDAAKRLLEASA 81

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  131 bits (331), Expect = 9e-36
 Identities = 49/253 (19%), Positives = 94/253 (37%), Gaps = 52/253 (20%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGN-----PLHVASAYGHVDFVKEIIRLK 66
           L  A +  +   +Q+L    P      +     +     PLH + ++   +    ++   
Sbjct: 6   LHQACMENEFFKVQELLHSKP------SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 67  PD--FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP-------ERKTPLHF 117
            +       +  G++P H+A + G ++VV+ L            P       +  T LH 
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL------YDRPLKPDLNKITNQGVTCLHL 113

Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKE 174
           A  K   +V  + L   G  A  V ++    +  LH A      +++  L         +
Sbjct: 114 AVGKKWFEVS-QFLIENG--A-SVRIKDKFNQIPLHRAASVGSLKLIELLCG-----LGK 164

Query: 175 NILNMKDKQGNTALHLATWKRECQVVELLLS-HGANASGGLEVNATNHSGLTALDVLLSF 233
           + +N +DKQG T L  A  +       LL+  +GA        +  ++ G  A DV    
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE------YDLVDNKGAKAEDV---- 214

Query: 234 PSEAGDREIEEIF 246
              A + ++++ F
Sbjct: 215 ---ALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  127 bits (323), Expect = 1e-34
 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 18/187 (9%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQKL 103
           PLH A        V+E++  KP    + +QDG  P+H + +    ++   L+    +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEV 160
                    TP H A   G ++VV + L        D++       T LHLAV    FEV
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVV-KSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEV 122

Query: 161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATN 220
            + L++        ++  +KDK     LH A      +++ELL   G +      VN  +
Sbjct: 123 SQFLIE-----NGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQD 171

Query: 221 HSGLTAL 227
             G T L
Sbjct: 172 KQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  109 bits (274), Expect = 9e-28
 Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 32/173 (18%)

Query: 46  PLHVASAYGHVDFVKEII--RLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           P H+A + G+++ VK +    LKPD   ++   G + +H+A      +V + L++     
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIE----- 128

Query: 104 CHLQGPE-------RKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAV 153
               G          + PLH AA  G + ++ E+L   G     V+ Q     T L  A+
Sbjct: 129 ---NGASVRIKDKFNQIPLHRAASVGSLKLI-ELLCGLG--KSAVNWQDKQGWTPLFHAL 182

Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
                +    LV+           ++ D +G  A  +A  +   QV +  L++
Sbjct: 183 AEGHGDAAVLLVE----KYGAEY-DLVDNKGAKAEDVALNE---QVKKFFLNN 227

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  130 bits (331), Expect = 1e-35
 Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 24/209 (11%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PL  A+   H++ VK +I+         + +G + +H+A+  G  +VV+ L+   Q   +
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVR 162
            Q     TP+ +A     VD+V ++L + G  + D++++       LH A  +   ++  
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLV-KLLLSKG--S-DINIRDNEENICLHWAAFSGCVDIAE 161

Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS 222
            L+       K ++ +  +  G++ LH+A  +     V L LS  ++      V   N  
Sbjct: 162 ILLA-----AKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD------VTLKNKE 209

Query: 223 GLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           G T L       S             A  
Sbjct: 210 GETPLQCA----SLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  130 bits (329), Expect = 2e-35
 Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 38/216 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A+  GHVD    +++   +     ++D  +P+  A+ N  ++ V+ L+K       
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIK------- 65

Query: 106 LQGP-------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKN 155
             G        E  T LH AA KG  +VV + L + G    DV+ Q     T +  A + 
Sbjct: 66  -AGALVDPKDAEGSTCLHLAAKKGHYEVV-QYLLSNG--QMDVNCQDDGGWTPMIWATEY 121

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
              ++V+ L+      K  +I N++D + N  LH A +     + E+LL+   +      
Sbjct: 122 KHVDLVKLLLS-----KGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD------ 169

Query: 216 VNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           ++A N  G +     L   +     +   +F S  +
Sbjct: 170 LHAVNIHGDSP----LHIAARENRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  119 bits (301), Expect = 2e-31
 Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 22/173 (12%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            LH+A+  GH + V+ ++          +  G++PM  A+    +D+V+ L+        
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS------- 132

Query: 106 LQGP-------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
            +G        E    LH+AA  G VD+  E+L A       V++  ++ LH+A + N++
Sbjct: 133 -KGSDINIRDNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAARENRY 190

Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS 211
           + V   +      +  ++  +K+K+G T L  A+   +      +     +++
Sbjct: 191 DCVVLFLS-----RDSDV-TLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  112 bits (283), Expect = 7e-29
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 31/188 (16%)

Query: 71  KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP-------ERKTPLHFAAIKGR 123
           K  +Q+  SP+H A+  G +D+   L++         G        +++TPL  AA    
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQ--------AGANIDTCSEDQRTPLMEAAENNH 56

Query: 124 VDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQ 183
           ++ V + L   G   +    +  T LHLA K   +EVV+ L+       + ++ N +D  
Sbjct: 57  LEAV-KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS----NGQMDV-NCQDDG 110

Query: 184 GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIE 243
           G T +  AT  +   +V+LLLS G++      +N  ++         L + + +G  +I 
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSD------INIRDNEENIC----LHWAAFSGCVDIA 160

Query: 244 EIFWSAGA 251
           EI  +A  
Sbjct: 161 EILLAAKC 168

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.4 bits (158), Expect = 6e-12
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 175 NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234
           N   M+ +   + LH A       +  +L+  GAN      ++  +    T     L   
Sbjct: 3   NF-KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN------IDTCSEDQRTP----LMEA 51

Query: 235 SEAGDREIEEIFWSAGA 251
           +E    E  +    AGA
Sbjct: 52  AENNHLEAVKYLIKAGA 68

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (326), Expect = 6e-35
 Identities = 55/220 (25%), Positives = 86/220 (39%), Gaps = 38/220 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQ---DGFSPMHMASANGQIDVVRGLMKFDQK 102
           PLH+A   G++  V  ++ L     +E++       +P+H+A       VVR L+     
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT---- 67

Query: 103 LCHLQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLA 152
                G  P        T  H A        +  +L +      D+  +     T LH+A
Sbjct: 68  ----AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

Query: 153 VKNNQFEVVRALVDWIRDVKKENILNMKD-KQGNTALHLATWKRECQVVELLLSHGANAS 211
           V     E V+ L++     +  +I +  D K G + L  A       +V+LLL HGAN  
Sbjct: 124 VNTECQETVQLLLE-----RGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-- 175

Query: 212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
               VNA  +SG +A    L   S  G   +      +GA
Sbjct: 176 ----VNAQMYSGSSA----LHSASGRGLLPLVRTLVRSGA 207

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  127 bits (322), Expect = 3e-34
 Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 32/215 (14%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH+A        V+ ++         +++ G +  H+A  +     +R L+  D     
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALL--DSAAPG 105

Query: 106 LQGPERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ----RETVLHLAVKNN 156
               E +     T LH A      + V ++L   G  A D+         + L  AV+NN
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETV-QLLLERG--A-DIDAVDIKSGRSPLIHAVENN 161

Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
              +V+ L+         N+ N +   G++ALH A+ +    +V  L+  GA+       
Sbjct: 162 SLSMVQLLLQ-----HGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD------S 209

Query: 217 NATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           +  N    T L             +I     +  A
Sbjct: 210 SLKNCHNDTPLM----VARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  122 bits (310), Expect = 1e-32
 Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 24/174 (13%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVN---QDGFSPMHMASANGQIDVVRGLM----- 97
             H+A  +     ++ ++        ++     DG + +H+A      + V+ L+     
Sbjct: 82  AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141

Query: 98  --KFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN 155
               D K         ++PL  A     + +V ++L  +G           + LH A   
Sbjct: 142 IDAVDIK-------SGRSPLIHAVENNSLSMV-QLLLQHGANVNAQMYSGSSALHSASGR 193

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
               +VR LV         +  ++K+   +T L +A  +R   ++    +  A+
Sbjct: 194 GLLPLVRTLVR-----SGADS-SLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  111 bits (281), Expect = 1e-28
 Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 33/192 (17%)

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE-------RKTPLHFAAIKGRV 124
             ++DG +P+H+A   G +  V  L+     L    G E       R+TPLH A I    
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGRELDIYNNLRQTPLHLAVITTLP 59

Query: 125 DVVSEMLSAYG----ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMK 180
            VV  +L   G              +T  HLA ++     +RAL+D          L  +
Sbjct: 60  SVV-RLLVTAGASPMALDRH----GQTAAHLACEHRSPTCLRALLD--SAAPGTLDLEAR 112

Query: 181 DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATN-HSGLTALDVLLSFPSEAGD 239
           +  G TALH+A      + V+LLL  GA+      ++A +  SG +     L    E   
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGAD------IDAVDIKSGRSP----LIHAVENNS 162

Query: 240 REIEEIFWSAGA 251
             + ++    GA
Sbjct: 163 LSMVQLLLQHGA 174

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 146 ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS 205
           +T LH+AV       V  LV+  +      + ++ +    T LHLA       VV LL++
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQ-GGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 206 HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDL 257
            GA+        A +  G TA         E            + A    DL
Sbjct: 68  AGAS------PMALDRHGQTA----AHLACEHRSPTCLRALLDSAAPGTLDL 109

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.0 bits (144), Expect = 4e-10
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 14/80 (17%)

Query: 176 ILNMKDKQGNTALHLATWKRECQVVELLLS----HGANASGGLEVNATNHSGLTALDVLL 231
           +    D+ G+T LH+A  +     V  L++     G        ++  N+   T     L
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE------LDIYNNLRQTP----L 50

Query: 232 SFPSEAGDREIEEIFWSAGA 251
                     +  +  +AGA
Sbjct: 51  HLAVITTLPSVVRLLVTAGA 70

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  131 bits (332), Expect = 2e-34
 Identities = 33/207 (15%), Positives = 60/207 (28%), Gaps = 43/207 (20%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAK----EVNQDGFSPMHMASANGQIDVVRGLMKFDQ 101
           PL  A  + + + +  ++   P  +       N+ G S +H A      DV    ++   
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE--- 232

Query: 102 KLCHLQGP-------ERKTPLHFAAIKGRVDVVSEMLSA------------YGECAEDVS 142
                 G        E   PL+ +     V +  E+L               G       
Sbjct: 233 -----MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 143 VQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL 202
           V     +  A   ++ EV++ L +     K + +       G         K    V  +
Sbjct: 288 VVWLDFVPAAADPSKQEVLQLLQE-----KLDEV-VRSLNTGAGGAVKRKKKAAPAVKRM 341

Query: 203 LLSHGANASGGLEVNATNHSGLTALDV 229
            L+  A       V   + S   +  V
Sbjct: 342 KLAPSAP------VRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (325), Expect = 1e-33
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 28/208 (13%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           P+H+A      D V  ++           + G  P  + +   + +V     +    + H
Sbjct: 87  PIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDEREVN----EIGSHVKH 135

Query: 106 LQGPERKTPLHFAAIKG--RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
            +G   +T LH+    G   ++++ ++L   G          ET L  A++    E +  
Sbjct: 136 CKG---QTALHWCVGLGPEYLEMI-KILVQLGASPTAKDKADETPLMRAMEFRNREALDL 191

Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG 223
           ++D +       + +  +KQGN+ LH A       V    +  G +      VN  ++  
Sbjct: 192 MMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMGID------VNMEDNEH 244

Query: 224 LTALDVLLSFPSEAGDREIEEIFWSAGA 251
                  L     A    + +       
Sbjct: 245 TVP----LYLSVRAAMVLLTKELLQKTD 268

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (312), Expect = 9e-32
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 35/186 (18%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQKL 103
            +HVA+  G  D V+ +I          N+ G + +H+A   G +D  + L        L
Sbjct: 23  KIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL 81

Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
            H      + P+H A +  + D+V  ++       E      +    L  + ++ EV   
Sbjct: 82  WH-----GQKPIHLAVMANKTDLVVALVEG---AKER----GQMPESLLNECDEREVNEI 129

Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKREC--QVVELLLSHGANASGGLEVNATNH 221
                         ++K  +G TALH          +++++L+  GA+        A + 
Sbjct: 130 GS------------HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS------PTAKDK 171

Query: 222 SGLTAL 227
           +  T L
Sbjct: 172 ADETPL 177

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.8 bits (234), Expect = 3e-21
 Identities = 16/161 (9%), Positives = 43/161 (26%), Gaps = 26/161 (16%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            LH A      D     + +  D     + +   P++++     + + + L++       
Sbjct: 214 HLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 106 LQGP------------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLH 150
              P                 +  AA   + +V+ ++L        +V            
Sbjct: 273 QACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL-QLLQEKL--D-EVVRSLNTGAGGAV 328

Query: 151 LAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
              K     V R  +          +   + +    +  ++
Sbjct: 329 KRKKKAAPAVKRMKLA-----PSAPV-RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.8 bits (216), Expect = 7e-19
 Identities = 31/136 (22%), Positives = 43/136 (31%), Gaps = 30/136 (22%)

Query: 110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVD 166
           E    +H AA KG+ D V   L   G      ++Q     T LHLA K    +  + L  
Sbjct: 19  ENMEKIHVAARKGQTDEV-RRLIETG--V-SPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 167 WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN----------ASGGLEV 216
                  E         G   +HLA    +  +V  L+                    EV
Sbjct: 75  -----VGEVH---SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREV 126

Query: 217 -----NATNHSGLTAL 227
                +  +  G TAL
Sbjct: 127 NEIGSHVKHCKGQTAL 142

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 18/106 (16%)

Query: 146 ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS 205
              +H+A +  Q + VR L++        +   ++++ G TALHLA         + L S
Sbjct: 21  MEKIHVAARKGQTDEVRRLIE-----TGVSP-TIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 206 HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            G         +  +  G       +     A   ++         
Sbjct: 75  VGEV------HSLWH--GQKP----IHLAVMANKTDLVVALVEGAK 108

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 11/82 (13%)

Query: 170 DVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
           D  K N     D +    +H+A  K +   V  L+  G +          N  G TA   
Sbjct: 7   DFPKLNR-IKSDDENMEKIHVAARKGQTDEVRRLIETGVS------PTIQNRFGCTA--- 56

Query: 230 LLSFPSEAGDREIEEIFWSAGA 251
            L    + G  +  +   S G 
Sbjct: 57  -LHLACKFGCVDTAKYLASVGE 77

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (319), Expect = 7e-34
 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 28/212 (13%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK----FDQ 101
            +  A+ YG  +  +E++    D  ++ +++  + +H A+ N +ID+V+  +      DQ
Sbjct: 12  DIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70

Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
                 G    TPLH+A  +G + +V   L  YG     +  +  + +HLA +     +V
Sbjct: 71  L----GGDLNSTPLHWATRQGHLSMV-VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125

Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWK-RECQVVELLLSHGANASGGLEVNA-T 219
             L+      K +++ +M D+ G T L  A ++        LLL+   +      VN   
Sbjct: 126 AYLIA-----KGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS------VNLGD 173

Query: 220 NHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            +   TA    L +   AG+  +  +   AGA
Sbjct: 174 KYHKNTA----LHWAVLAGNTTVISLLLEAGA 201

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  122 bits (309), Expect = 2e-32
 Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 34/215 (15%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            LH A+    +D VK  I       +       +P+H A+  G + +V  LMK       
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK------- 97

Query: 106 LQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAV-KNNQ 157
             G  P        + +H AA  G   +V   L A G+  + +     T L  A  + + 
Sbjct: 98  -YGADPSLIDGEGCSCIHLAAQFGHTSIV-AYLIAKGQDVDMMDQNGMTPLMWAAYRTHS 155

Query: 158 FEVVRALVDWIRDVKKENILNMKDKQ-GNTALHLATWKRECQVVELLLSHGANASGGLEV 216
            +  R L+         ++ N+ DK   NTALH A       V+ LLL  GAN      V
Sbjct: 156 VDPTRLLLT-----FNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN------V 203

Query: 217 NATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           +A N  G +ALD+      +  +  +      A  
Sbjct: 204 DAQNIKGESALDLA----KQRKNVWMINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  116 bits (293), Expect = 3e-30
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 31/176 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A+  GH+  V ++++   D    ++ +G S +H+A+  G   +V  L+        
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIA------- 130

Query: 106 LQG--PERK-----TPLHFAAIKG-RVDVVSEMLSAYGECAEDVSVQ----RETVLHLAV 153
            +G   +       TPL +AA +   VD    +L  +      V++     + T LH AV
Sbjct: 131 -KGQDVDMMDQNGMTPLMWAAYRTHSVDPT-RLLLTFN--V-SVNLGDKYHKNTALHWAV 185

Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
                 V+  L++        N+ + ++ +G +AL LA  ++   ++  L      
Sbjct: 186 LAGNTTVISLLLE-----AGANV-DAQNIKGESALDLAKQRKNVWMINHLQEARQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (278), Expect = 4e-28
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 29/164 (17%)

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMK----FDQKLCHLQGPERKTPLHFAAIKGRVDVV 127
            ++      +  A+  G  +  R L++      Q        E  T LH+AAI  R+D+V
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP-----DKENVTLLHWAAINNRIDLV 58

Query: 128 SEMLSAYG----ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQ 183
            +   + G    +   D++    T LH A +     +V  L+         +  ++ D +
Sbjct: 59  -KYYISKGAIVDQLGGDLN---STPLHWATRQGHLSMVVQLMK-----YGADP-SLIDGE 108

Query: 184 GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
           G + +HLA       +V  L++ G +      V+  + +G+T L
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQD------VDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.0 bits (222), Expect = 2e-20
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 18/141 (12%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
              +  A   G  +     L   G        +  T+LH A  NN+ ++V+  +      
Sbjct: 10  TWDIVKATQYGIYERC-RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS----- 63

Query: 172 KKENILNMKDK-QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL 230
           K   + +       +T LH AT +    +V  L+ +GA+       +  +  G +     
Sbjct: 64  KGAIV-DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD------PSLIDGEGCSC---- 112

Query: 231 LSFPSEAGDREIEEIFWSAGA 251
           +   ++ G   I     + G 
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQ 133

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 11/77 (14%)

Query: 175 NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234
           ++    D      +  AT     +    L+  G +      V   +   +T     L + 
Sbjct: 1   HM-THIDDYSTWDIVKATQYGIYERCRELVEAGYD------VRQPDKENVTL----LHWA 49

Query: 235 SEAGDREIEEIFWSAGA 251
           +     ++ + + S GA
Sbjct: 50  AINNRIDLVKYYISKGA 66

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.1 bits (147), Expect = 1e-10
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 46  PLHVASAYGH-VDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           PL  A+   H VD  + ++               + +H A   G   V+  L++      
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE------ 198

Query: 105 HLQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAED 140
              G   + +     + L  A  +  V +++ +  A      D
Sbjct: 199 --AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (321), Expect = 1e-33
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 29/190 (15%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A   GH+  VK +++        V  D  +P+  A  +G  D V  L++       
Sbjct: 95  PLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQ------- 146

Query: 106 LQGP------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE 159
             G       +  +P+H AA +G V+ V   L AYG   +       T L+LA +N Q  
Sbjct: 147 -HGASVQPESDLASPIHEAARRGHVECV-NSLIAYGGNIDHKISHLGTPLYLACENQQRA 204

Query: 160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNAT 219
            V+ L++   DV +        K  ++ LH        ++  LL+  GA+        A 
Sbjct: 205 CVKKLLESGADVNQ-------GKGQDSPLHAVVRTASEELACLLMDFGAD------TQAK 251

Query: 220 NHSGLTALDV 229
           N  G   +++
Sbjct: 252 NAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  124 bits (313), Expect = 1e-32
 Identities = 53/231 (22%), Positives = 85/231 (36%), Gaps = 42/231 (18%)

Query: 33  LILHTPAFASAGN---PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQ 89
            +L  P    A +   P+H A+ +GH   ++ +I         +  D  SP+H A   G 
Sbjct: 46  RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGH 104

Query: 90  IDVVRGLMKFDQKLCHLQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVS 142
           +  V+ L+K         G           TPL  A + G  D V  +L  +G  A  V 
Sbjct: 105 LSCVKILLK--------HGAQVNGVTADWHTPLFNACVSGSWDCV-NLLLQHG--A-SVQ 152

Query: 143 VQRE--TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
            + +  + +H A +    E V +L+         NI + K     T L+LA   ++   V
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIA-----YGGNI-DHKISHLGTPLYLACENQQRACV 206

Query: 201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           + LL  GA+      VN       +     L         E+  +    GA
Sbjct: 207 KKLLESGAD------VNQGKG-QDSP----LHAVVRTASEELACLLMDFGA 246

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  113 bits (285), Expect = 1e-28
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 32/181 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF----DQ 101
           PL  A   G  D V  +++       +   D  SP+H A+  G ++ V  L+ +    D 
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGAS--VQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185

Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG---ECAEDVSVQRETVLHLAVKNNQF 158
           K+ HL      TPL+ A    +   V + L   G      +     +++ LH  V+    
Sbjct: 186 KISHL-----GTPLYLACENQQRACV-KKLLESGADVNQGKG----QDSPLHAVVRTASE 235

Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
           E+   L+D        +    K+ +G   + L   +        L   GA+      +  
Sbjct: 236 ELACLLMD-----FGADT-QAKNAEGKRPVELVPPESPL-AQLFLEREGAS------LPK 282

Query: 219 T 219
            
Sbjct: 283 P 283

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  111 bits (280), Expect = 5e-28
 Identities = 37/207 (17%), Positives = 61/207 (29%), Gaps = 30/207 (14%)

Query: 49  VASAYGHVDFVKEIIRLKPDF----AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           + S++ H      ++           K+   DG  P       G   +   LM       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMG------ 54

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
                   +P+H AAI G    +   L + G     ++    + LH A        V+ L
Sbjct: 55  --DAVSDWSPMHEAAIHGHQLSL-RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL 224
           +          + N      +T L  A        V LLL HGA+      V   +    
Sbjct: 112 LK-----HGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS------VQPESD-LA 158

Query: 225 TALDVLLSFPSEAGDREIEEIFWSAGA 251
           +     +   +  G  E      + G 
Sbjct: 159 SP----IHEAARRGHVECVNSLIAYGG 181

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  123 bits (312), Expect = 1e-33
 Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 28/182 (15%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            +      G+   V+  +    +   + +  GFSP+H A   G+  VV  L+        
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM------- 60

Query: 106 LQGPE-------RKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
            +G           TPLH AA  G  D+V + L  Y      V+      LH A    Q 
Sbjct: 61  -RGARINVMNRGDDTPLHLAASHGHRDIV-QKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
           +V   LV          + ++ +K G   +  A       + E     G N      +N 
Sbjct: 119 QVAEDLVA-----NGALV-SICNKYGEMPVDKAKAPLRELLRERAEKMGQN------LNR 166

Query: 219 TN 220
             
Sbjct: 167 IP 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  116 bits (294), Expect = 5e-31
 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 23/181 (12%)

Query: 74  NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
           + +    +      G    VR  +   +   +       +PLH+A  +GR  VV EML  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIM 60

Query: 134 YGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHL 190
            G  A  ++V     +T LHLA  +   ++V+ L+       K +I N  ++ GN  LH 
Sbjct: 61  RG--A-RINVMNRGDDTPLHLAASHGHRDIVQKLLQ-----YKADI-NAVNEHGNVPLHY 111

Query: 191 ATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAG 250
           A +  + QV E L+++GA       V+  N  G   +D             + E     G
Sbjct: 112 ACFWGQDQVAEDLVANGAL------VSICNKYGEMPVD----KAKAPLRELLRERAEKMG 161

Query: 251 A 251
            
Sbjct: 162 Q 162

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  125 bits (317), Expect = 5e-33
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 29/208 (13%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A++ G++D  + +I         VN +G +P+ +A      ++++  +        
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVN------- 160

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR--ETVLHLAVKNNQFEVVRA 163
            QG + +            D   + L++      DV   +   T LH+A      EV++ 
Sbjct: 161 RQGVDIEAARKEEERIMLRDAR-QWLNSGH--INDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG 223
           L+       + ++ N+KD  G T LH A    + +   +L+ +  +      + A N  G
Sbjct: 218 LIQ-----ARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD------MEAVNKVG 265

Query: 224 LTALDVLLSFPSEAGDREIEEIFWSAGA 251
            TA DV      E     +EE+      
Sbjct: 266 QTAFDV----ADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (284), Expect = 2e-28
 Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 35/191 (18%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           G     A + G  + V  ++    D     N DG + +H A  +  +D+V+ L++     
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVE----- 94

Query: 104 CHLQGP-------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN 156
               G        E   PLH AA  G +D+  E L + G     V+ + +T L +A +  
Sbjct: 95  ---NGANINQPDNEGWIPLHAAASCGYLDIA-EYLISQGAHVGAVNSEGDTPLDIAEEEA 150

Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
             E+++              +N +      A             + L S   N       
Sbjct: 151 MEELLQNE------------VNRQGVDIEAARKEEERIMLRDARQWLNSGHIN------D 192

Query: 217 NATNHSGLTAL 227
                SG TAL
Sbjct: 193 VRHAKSGGTAL 203

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 97.6 bits (244), Expect = 6e-23
 Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 34/173 (19%)

Query: 63  IRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERK------TPLH 116
           +++        +        +    G    +   +         +  + K          
Sbjct: 1   MKMA-------DAKQKRNEQLKRWIGSETDLEPPVV--------KRKKTKVKFDDGAVFL 45

Query: 117 FAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENI 176
            A   G  + V  +L   G      +V   T LH A  ++  ++V+ LV+        NI
Sbjct: 46  AACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVE-----NGANI 99

Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
            N  D +G   LH A       + E L+S GA+      V A N  G T LD+
Sbjct: 100 -NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH------VGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 87.9 bits (219), Expect = 1e-19
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 22/144 (15%)

Query: 110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE--TVLHLAVKNNQFEVVRALVDW 167
           ++K         G    + E      +      V+ +   V   A  +   E V  L++ 
Sbjct: 7   KQKRNEQLKRWIGSETDL-EPPVVKRK---KTKVKFDDGAVFLAACSSGDTEEVLRLLE- 61

Query: 168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
               +  +I N  +  G TALH A       +V+ L+ +GAN      +N  ++ G    
Sbjct: 62  ----RGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGAN------INQPDNEGWIP- 109

Query: 228 DVLLSFPSEAGDREIEEIFWSAGA 251
              L   +  G  +I E   S GA
Sbjct: 110 ---LHAAASCGYLDIAEYLISQGA 130

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  121 bits (306), Expect = 6e-33
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 34/188 (18%)

Query: 44  GN---PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFD 100
           G     +H  +A G + ++   I  +       +++GF+P+  A+A+GQI VV  L++  
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQ-- 57

Query: 101 QKLCH-----LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLA 152
               +     L G  R++ L  A  KG  D+V +ML   G    DV+       T L  A
Sbjct: 58  ----NGADPQLLGKGRESALSLACSKGYTDIV-KMLLDCG--V-DVNEYDWNGGTPLLYA 109

Query: 153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASG 212
           V  N  + V+ L++        +   ++   G  ++ LA       V +++ SH      
Sbjct: 110 VHGNHVKCVKMLLE-----SGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHLLK--- 160

Query: 213 GLEVNATN 220
              +    
Sbjct: 161 ---LLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  110 bits (278), Expect = 6e-29
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 38/186 (20%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--PERK-----TPLHFAAIKGRVDVVS 128
                +H  +A G++  +   ++        Q            TPL +AA  G++ VV 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIE--------QENVINHTDEEGFTPLMWAAAHGQIAVV- 52

Query: 129 EMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN 185
           E L   G  A D  +    RE+ L LA      ++V+ L+D        ++ N  D  G 
Sbjct: 53  EFLLQNG--A-DPQLLGKGRESALSLACSKGYTDIVKMLLD-----CGVDV-NEYDWNGG 103

Query: 186 TALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEI 245
           T L  A      + V++LL  GA+            SG  ++D+        G R ++++
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGAD------PTIETDSGYNSMDL----AVALGYRSVQQV 153

Query: 246 FWSAGA 251
             S   
Sbjct: 154 IESHLL 159

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  122 bits (309), Expect = 7e-33
 Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 38/214 (17%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
             L  A+        + +         EV+ +G +P+++A  N  I++ + L      + 
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKAL------ID 60

Query: 105 H-----LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNN 156
                 LQ     +P  +A  +GR +++   +  +     D++         L  A +  
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEIL-AYMLKHA--TPDLNKHNRYGGNALIPAAEKG 117

Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQ-----VVELLLSHGANAS 211
             + V+ L+    +  +E+I + ++  G TAL  A   RE       +V+LL+ +GA+  
Sbjct: 118 HIDNVKLLL----EDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-- 170

Query: 212 GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEI 245
                +  ++SG TA    + + ++ G  EI +I
Sbjct: 171 ----QSIKDNSGRTA----MDYANQKGYTEISKI 196

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  102 bits (257), Expect = 1e-25
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 35/190 (18%)

Query: 74  NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE-------RKTPLHFAAIKGRVDV 126
             +  + +  A+      V   L             +         TPL+ A     +++
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD--------TTYQVDEVDTEGNTPLNIAVHNNDIEI 54

Query: 127 VSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQ 183
             + L   G  A D+++Q    ++    A    + E++  ++         ++ N  ++ 
Sbjct: 55  A-KALIDRG--A-DINLQNSISDSPYLYAGAQGRTEILAYMLK----HATPDL-NKHNRY 105

Query: 184 GNTALHLATWKRECQVVELLLSHG-ANASGGLEVNATNHSGLTALDV-LLSFPSEAGDRE 241
           G  AL  A  K     V+LLL  G  +      ++  N  G TAL   +         ++
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGRED------IDFQNDFGYTALIEAVGLREGNQLYQD 159

Query: 242 IEEIFWSAGA 251
           I ++    GA
Sbjct: 160 IVKLLMENGA 169

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  102 bits (257), Expect = 1e-25
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 18/169 (10%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PL++A     ++  K +I    D     N    SP   A A G+ +++  ++K      +
Sbjct: 42  PLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAV-----KNNQ 157
                    L  AA KG +D V ++L   G   ED+  Q     T L  AV         
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNV-KLLLEDGR--EDIDFQNDFGYTALIEAVGLREGNQLY 157

Query: 158 FEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
            ++V+ L++        +  ++KD  G TA+  A  K   ++ ++L  +
Sbjct: 158 QDIVKLLME-----NGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 179 MKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG 238
           MK  +    L  A  +   +V E+L            V+  +  G T     L+      
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ------VDEVDTEGNTP----LNIAVHNN 50

Query: 239 DREIEEIFWSAGA 251
           D EI +     GA
Sbjct: 51  DIEIAKALIDRGA 63

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 17/99 (17%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGN-----PLHVASAY-----GHVDFVKE 61
           LI AA  G +  ++ L      +          N      L  A         + D VK 
Sbjct: 110 LIPAAEKGHIDNVKLL------LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163

Query: 62  IIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFD 100
           ++    D     +  G + M  A+  G  ++ + L +++
Sbjct: 164 LMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  120 bits (303), Expect = 2e-32
 Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 18/180 (10%)

Query: 73  VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS 132
            N +    +  A+  G ++ V+ L       C      + TPLHFAA   RV VV E L 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-EYLL 62

Query: 133 AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT 192
            +G             LH A     +EV   LV          + N+ D    T LH A 
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-----HGAVV-NVADLWKFTPLHEAA 116

Query: 193 WKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
            K + ++ +LLL HGA+          N  G T LD+      + GD +I+++     A+
Sbjct: 117 AKGKYEICKLLLQHGAD------PTKKNRDGNTPLDL-----VKDGDTDIQDLLRGDAAL 165

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 11/74 (14%)

Query: 179 MKDKQGNTALHLATWKRECQVVELLLS-HGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
           M + + +  L  A    + + V+ L +    N               T     L F +  
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVN------CRDIEGRQSTP----LHFAAGY 52

Query: 238 GDREIEEIFWSAGA 251
               + E     GA
Sbjct: 53  NRVSVVEYLLQHGA 66

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  123 bits (311), Expect = 2e-32
 Identities = 30/218 (13%), Positives = 63/218 (28%), Gaps = 44/218 (20%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVN-QDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
             + A A  +V  V  ++          N  +   P+H A+      +V+ L+       
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGAL----KNLLENEFPLHQAATLEDTKIVKILLF------ 83

Query: 105 HLQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ----RETVLHLAV 153
              G    +      T L++A   G +  V ++          +        +T  + AV
Sbjct: 84  --SGLDDSQFDDKGNTALYYAVDSGNMQTV-KLFVKKN--W-RLMFYGKTGWKTSFYHAV 137

Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGG 213
             N   +V   +  I                 + +H+        ++ LLL +  +    
Sbjct: 138 MLNDVSIVSYFLSEIPS-------TFDLAILLSCIHITIKNGHVDMMILLLDYMTS---- 186

Query: 214 LEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
              N  N          +    +  D E+ +  +    
Sbjct: 187 --TNTNNSLLFIP---DIKLAIDNKDIEMLQALFKYDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  122 bits (308), Expect = 6e-32
 Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 45/216 (20%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A+       VK ++    D   + +  G + ++ A  +G +  V+  +K       
Sbjct: 65  PLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVK------- 116

Query: 106 LQGPE--------RKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV-QRETVLHLAVKNN 156
            +            KT  + A +   V +V     +         +    + +H+ +KN 
Sbjct: 117 -KNWRLMFYGKTGWKTSFYHAVMLNDVSIV-SYFLSEI--PSTFDLAILLSCIHITIKNG 172

Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNT-ALHLATWKRECQVVELLLSHGANASGGLE 215
             +++  L+D        +  N  +       + LA   ++ ++++ L  +  N      
Sbjct: 173 HVDMMILLLD-----YMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN------ 220

Query: 216 VNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           + + N                  D EI ++      
Sbjct: 221 IYSANLEN-----------VLLDDAEIAKMIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  108 bits (273), Expect = 6e-27
 Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 41/217 (18%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           G  L           +K  +    D   + +  G S  + A A+  + +V  L+      
Sbjct: 1   GMDLSRI-NTWKSKQLKSFLS-SKD-TFKADVHGHSASYYAIADNNVRLVCTLLN----- 52

Query: 104 CHLQGPE-----RKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKN 155
               G        + PLH AA      +V ++L   G    D S       T L+ AV +
Sbjct: 53  ---AGALKNLLENEFPLHQAATLEDTKIV-KILLFSG--L-DDSQFDDKGNTALYYAVDS 105

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQG-NTALHLATWKRECQVVELLLSHGANASGGL 214
              + V+  V      K   +     K G  T+ + A    +  +V   LS   +     
Sbjct: 106 GNMQTVKLFVK-----KNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS----- 154

Query: 215 EVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
                    L+     +    + G  ++  +      
Sbjct: 155 --TFDLAILLSC----IHITIKNGHVDMMILLLDYMT 185

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (261), Expect = 2e-25
 Identities = 23/193 (11%), Positives = 59/193 (30%), Gaps = 43/193 (22%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFS-PMHMASANGQIDVVRGLMKFDQKLC 104
            L+ A   G++  VK  ++          + G+    + A     + +V   +       
Sbjct: 98  ALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLS------ 150

Query: 105 HLQGP------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ----RETVLHLAVK 154
             + P         + +H     G VD++  +L  Y       +          + LA+ 
Sbjct: 151 --EIPSTFDLAILLSCIHITIKNGHVDMM-ILLLDYM--T-STNTNNSLLFIPDIKLAID 204

Query: 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGL 214
           N   E+++AL                D    +A        + ++ ++++          
Sbjct: 205 NKDIEMLQALFK-------------YDINIYSANLENVLLDDAEIAKMIIEKHVE----- 246

Query: 215 EVNATNHSGLTAL 227
              + +++    +
Sbjct: 247 -YKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 20/170 (11%), Positives = 45/170 (26%), Gaps = 28/170 (16%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
             + A     V  V   +   P           S +H+   NG +D++  L      L +
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITIKNGHVDMMILL------LDY 183

Query: 106 -----LQGPERKTP-LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE 159
                        P +  A     ++++ + L  Y     ++     +     V  +  E
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEML-QALFKYD--I-NI----YSANLENVLLDDAE 235

Query: 160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
           + + +++     K            +  +       E       L     
Sbjct: 236 IAKMIIE-----KHVEY-KSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  121 bits (306), Expect = 4e-32
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 21/188 (11%)

Query: 71  KEVNQDGFSPMHMASANGQIDVVRGLMKF---DQKLCHLQGPERKTPLHFAAIKGRVDVV 127
           +++ +DG S +H+A  + +  +   +++    D    + Q   ++TPLH A I  + ++ 
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 128 SEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG 184
            E L   G    D  ++     T LHLA +      V  L          +IL   +  G
Sbjct: 62  -EALLGAG--C-DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 185 NTALHLATWKRECQVVELLLSHGANASGGLEVNA-TNHSGLTALDVLLSFPSEAGDREIE 243
           +T LHLA+      +VELL+S GA+      VNA    +G TAL        +  + ++ 
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNGRTALH----LAVDLQNPDLV 167

Query: 244 EIFWSAGA 251
            +    GA
Sbjct: 168 SLLLKCGA 175

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  117 bits (295), Expect = 1e-30
 Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 34/231 (14%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGN-----PLHVASAYGHVDFVKEIIRLK 66
           L  A +  +     ++ +   +     AF +  N     PLH+A      +  + ++   
Sbjct: 12  LHLAIIHEEKALTMEV-IRQ-VKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 67  PDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERK-----TPLHFAAIK 121
            D  +  +  G +P+H+A   G +  V  L +           +       T LH A+I 
Sbjct: 69  CD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127

Query: 122 GRVDVVSEMLSAYGECAEDVSVQ----RETVLHLAVKNNQFEVVRALVDWIRDVKKENIL 177
           G + +V E+L + G  A DV+ Q      T LHLAV     ++V  L+         ++ 
Sbjct: 128 GYLGIV-ELLVSLG--A-DVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-----CGADV- 177

Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
           N    QG +   L   +   ++ + L                         
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE------NLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.0 bits (206), Expect = 2e-18
 Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 26/159 (16%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAK-----EVNQDGFSPMHMASANGQIDVVRGLMK-- 98
           PLH+A   G +  V  + +              N +G + +H+AS +G + +V  L+   
Sbjct: 81  PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140

Query: 99  -----FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAV 153
                 +           +T LH A      D+V  +L   G     V+ Q  +   L  
Sbjct: 141 ADVNAQEPC-------NGRTALHLAVDLQNPDLV-SLLLKCGADVNRVTYQGYSPYQLTW 192

Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT 192
                 + + L     +            +        T
Sbjct: 193 GRPSTRIQQQLGQLTLEN------LQMLPESEDEESYDT 225

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (306), Expect = 1e-31
 Identities = 44/202 (21%), Positives = 72/202 (35%), Gaps = 40/202 (19%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A      D V+ ++R   D      ++G +P  +A+  G + +++  +        
Sbjct: 42  PLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLS------- 93

Query: 106 LQGPE-------RKTPLHFAAIKGRVDVVSEMLSA---------YGECAEDVSVQRETVL 149
            +G +         T    AA+ G+V  +  +              E  E +     T L
Sbjct: 94  -KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 150 HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK----RECQVVELLLS 205
             A +    EV++ L+    D    ++ N  D  G  AL  A           +  LLL 
Sbjct: 153 MDAAEKGHVEVLKILL----DEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 206 HGANASGGLEVNATNHSGLTAL 227
           HGA+      VN     G T L
Sbjct: 208 HGAD------VNVRGERGKTPL 223

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (305), Expect = 2e-31
 Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 37/223 (16%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK------- 98
           P  +A+  G V  +K  +    D   E +  GF+    A+  G++  ++ L K       
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133

Query: 99  --FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAV 153
               ++          T L  AA KG V+V+  +L   G  A DV+         L  A+
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG--A-DVNACDNMGRNALIHAL 190

Query: 154 KNNQF----EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH-GA 208
            ++       +   L+D        ++ N++ ++G T L LA  K+   +V+ LL     
Sbjct: 191 LSSDDSDVEAITHLLLD-----HGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 209 NASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
                  +N T+  G TA    L    E   ++I E+    GA
Sbjct: 245 E------INDTDSDGKTA----LLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  117 bits (297), Expect = 2e-30
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 31/221 (14%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           + L  A     VD V++++    +   +  + G++P+H A    + D+V  L      L 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL------LR 60

Query: 105 H-----LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNN 156
           H     L+     TP   AAI G V ++ ++  + G  A DV+       T    A    
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLL-KLFLSKG--A-DVNECDFYGFTAFMEAAVYG 116

Query: 157 QFEVVRALVDW-----IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH-GANA 210
           + + ++ L        +R  K +       K G TAL  A  K   +V+++LL   GA+ 
Sbjct: 117 KVKALKFLYKRGANVNLRR-KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD- 174

Query: 211 SGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
                VNA ++ G  AL   L    ++    I  +    GA
Sbjct: 175 -----VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  108 bits (273), Expect = 5e-27
 Identities = 43/197 (21%), Positives = 79/197 (40%), Gaps = 43/197 (21%)

Query: 46  PLHVASAYGHVDFVKEII---------RLKPDFAKEVNQDGFSPMHMASANGQIDVVRGL 96
               A+ YG V  +K +          R   +  + + + G + +  A+  G ++V++ L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 97  MKFDQKLCHL------QGPERKTPLHFAAIKGRVDVVSEM---LSAYGECAEDVSVQ--- 144
                 L  +           +  L  A +      V  +   L  +G  A DV+V+   
Sbjct: 168 ------LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG--A-DVNVRGER 218

Query: 145 RETVLHLAVKNNQFEVVRALVDWIRDVKKENI-LNMKDKQGNTALHLATWKRECQVVELL 203
            +T L LAV+     +V+ L++      +E+I +N  D  G TAL LA   +  ++ ELL
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLE------QEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

Query: 204 LSHGANASGGLEVNATN 220
              GA+       +  +
Sbjct: 273 CKRGAS------TDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  104 bits (262), Expect = 2e-25
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 33/169 (19%)

Query: 74  NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE--------RKTPLHFAAIKGRVD 125
             +    +  A  N  +D+V+ L++         G            TPLH A    R D
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLE--------GGANVNFQEEEGGWTPLHNAVQMSRED 53

Query: 126 VVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDK 182
           +V E+L  +G  A D  ++     T   LA      ++++  +      K  ++ N  D 
Sbjct: 54  IV-ELLLRHG--A-DPVLRKKNGATPFLLAAIAGSVKLLKLFLS-----KGADV-NECDF 103

Query: 183 QGNTALHLATWKRECQVVELLLSHGAN----ASGGLEVNATNHSGLTAL 227
            G TA   A    + + ++ L   GAN         +       G TAL
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 98.3 bits (246), Expect = 3e-23
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 25/165 (15%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ----RETVLHLAVKNNQFEVVRALVDW 167
              L  A     VD+V + L   G  A +V+ Q      T LH AV+ ++ ++V  L+  
Sbjct: 6   NHLLIKAVQNEDVDLV-QQLLEGG--A-NVNFQEEEGGWTPLHNAVQMSREDIVELLLR- 60

Query: 168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
                  +   ++ K G T   LA      ++++L LS GA+      VN  +  G TA 
Sbjct: 61  ----HGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD------VNECDFYGFTA- 108

Query: 228 DVLLSFPSEAGDREIEEIFWSAGA-MRMRDLTLSPIRSPEPHGQT 271
                  +  G  +  +  +  GA + +R  T          G T
Sbjct: 109 ---FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 11/72 (15%)

Query: 181 DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA-TNHSGLTALDVLLSFPSEAGD 239
             + N  L  A    +  +V+ LL  GAN      VN      G T     L    +   
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTP----LHNAVQMSR 51

Query: 240 REIEEIFWSAGA 251
            +I E+    GA
Sbjct: 52  EDIVELLLRHGA 63

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (309), Expect = 2e-31
 Identities = 48/207 (23%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL-- 103
           PLH A++   V+    ++    D    VN  G S + MA      + +    K    L  
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185

Query: 104 ---CHL---------------QGPERKTPLHFAAIKG---RVDVVSEMLSAYGECAEDVS 142
                L               Q    +T LH A       R  V  E+L   G    + +
Sbjct: 186 AREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA-ELLLRKGANVNEKN 244

Query: 143 VQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL 202
               T LH+A +    +V+  L           + N  D  G TALH A      Q   L
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHK-----HGAKM-NALDSLGQTALHRAALAGHLQTCRL 298

Query: 203 LLSHGANASGGLEVNATNHSGLTALDV 229
           LLS+G++       +  +  G TA  +
Sbjct: 299 LLSYGSD------PSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (276), Expect = 6e-27
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 44  GNPLHVASAYGHVDFVKEI-IRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102
            + L  A+  G+ + +  +   L  +     +    +P+H+A+   ++ +V+ L++    
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83

Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
           + H +      PLH A   G  +V  E+L  +G C   + + + T LH A   N+ EV  
Sbjct: 84  V-HAKDKGGLVPLHNACSYGHYEVT-ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG----ANASGGLE--- 215
            L+         +   + +  G +A+ +A      + +           A     L    
Sbjct: 142 LLLS-----HGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVK 195

Query: 216 --------VNATNHSGLTAL 227
                         S  TAL
Sbjct: 196 KTLALEIINFKQPQSHETAL 215

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  106 bits (268), Expect = 7e-26
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 57/225 (25%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
           +  A      + L   F               G+ L  A+    +  VK+ + L+    K
Sbjct: 161 VDMAPTPELRERLTYEF--------------KGHSLLQAAREADLAKVKKTLALEIINFK 206

Query: 72  EVNQDGFSPMHMASANG---QIDVVRGLMKFDQKLCHLQGP-------ERKTPLHFAAIK 121
           +  Q   + +H A A+    +  V   L++        +G        +  TPLH AA +
Sbjct: 207 Q-PQSHETALHCAVASLHPKRKQVAELLLR--------KGANVNEKNKDFMTPLHVAAER 257

Query: 122 GRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILN 178
              DV+ E+L  +G  A  ++      +T LH A      +  R L+         +  +
Sbjct: 258 AHNDVM-EVLHKHG--A-KMNALDSLGQTALHRAALAGHLQTCRLLLS-----YGSDP-S 307

Query: 179 MKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG 223
           +   QG TA  +       + V+ +LS          +  ++   
Sbjct: 308 IISLQGFTAAQMGN-----EAVQQILSESTP------MRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  106 bits (268), Expect = 9e-26
 Identities = 46/188 (24%), Positives = 69/188 (36%), Gaps = 35/188 (18%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQID-VVRGLMKFDQKLC 104
            L +A                        +     +  A+ +G  + ++  L   +   C
Sbjct: 7   ALDLADPSAKAV--------------LTGEYKKDELLEAARSGNEEKLMALLTPLNVN-C 51

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVV 161
           H     + TPLH AA   RV +V ++L  +G  A DV  +       LH A     +EV 
Sbjct: 52  HASDGRKSTPLHLAAGYNRVRIV-QLLLQHG--A-DVHAKDKGGLVPLHNACSYGHYEVT 107

Query: 162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNH 221
             L+          + N  D    T LH A  K   +V  LLLSHGA+          N 
Sbjct: 108 ELLLK-----HGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD------PTLVNC 155

Query: 222 SGLTALDV 229
            G +A+D+
Sbjct: 156 HGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            LH A+  GH+   + ++    D    ++  GF+   M +   Q  +             
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGNEAVQQILSEST--------P 333

Query: 106 LQGPERKTPLHFAAIKG 122
           ++  +    L  A+  G
Sbjct: 334 MRTSDVDYRLLEASKAG 350

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  121 bits (307), Expect = 4e-31
 Identities = 53/264 (20%), Positives = 88/264 (33%), Gaps = 46/264 (17%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTP-----AFASAGN-PLHVASAYGHVDFVKEIIRL 65
           L   A     +  + L V              A     N PL +A        V  +++ 
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA 188

Query: 66  KPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG---PERK-----TPLHF 117
             D     N+   S +H A+AN    ++  +      L   +     E       T L  
Sbjct: 189 GAD-PTIYNKSERSALHQAAANRDFGMMVYM------LNSTKLKGDIEELDRNGMTALMI 241

Query: 118 AAIKGRVDVVS--EMLSAYG-----ECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDW 167
            A     D V+  ++L   G     + A     ++    T LH A + +   +V+ LV  
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
               K  N  + +D+ G T + LA  +   +VV  L+  GA+      V A + +  TA 
Sbjct: 302 ----KGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------VEAVDATDHTAR 350

Query: 228 DVLLSFPSEAGDREIEEIFWSAGA 251
            +            I +IF     
Sbjct: 351 QL----AQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  116 bits (294), Expect = 3e-29
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 24/179 (13%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAK--EVNQDGFSPMHMASANG---QIDVVRGLMKF- 99
            LH A+A      +  ++          E++++G + + + + N    Q+   + L++  
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

Query: 100 -DQKLCHLQGPERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLH 150
                      + +     T LH+AA    + +V  ++   G  + +   Q    +T + 
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG--S-NKDKQDEDGKTPIM 318

Query: 151 LAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
           LA +  + EVV  L+      +  ++    D   +TA  LA       +V++       
Sbjct: 319 LAAQEGRIEVVMYLIQ-----QGASV-EAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  111 bits (280), Expect = 2e-27
 Identities = 43/196 (21%), Positives = 60/196 (30%), Gaps = 44/196 (22%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           + L  AS  G++   +           E+      P      NG   +            
Sbjct: 39  HSLLEASYDGYIKRQRN----------ELQHYSLYPNPQGYGNGNDFLG--------DFN 80

Query: 105 HLQG-------PERKTPLHFAAIKGRVDVVSEMLSAYG-ECAEDVSVQRETVLHLAVKNN 156
           H          PE    LH  A  G   +  E ++       +       TVLH    N+
Sbjct: 81  HTNLQIPTEPEPESPIKLHTEA-AGSYAIT-EPITRESVNIIDPRH--NRTVLHWIASNS 136

Query: 157 QFEVVRALVDWIRDVKKENI-----LNMKDKQGNTALHLATWKRECQVVELLLSHGANAS 211
             E    L   I    KE I     +N  D   NT L LA   R  ++V  L+  GA+  
Sbjct: 137 SAEKSEDL---IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-- 191

Query: 212 GGLEVNATNHSGLTAL 227
                   N S  +AL
Sbjct: 192 ----PTIYNKSERSAL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  118 bits (298), Expect = 4e-31
 Identities = 45/228 (19%), Positives = 83/228 (36%), Gaps = 34/228 (14%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAK--EVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           PL +A+    V  + ++  LK +  +  +    G + +H+A+    ++    LM+   +L
Sbjct: 6   PLLLAAKENDVQALSKL--LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 104 CHLQGPER----KTPLHFAAIKGRVDVVSEMLS------------AYGECAEDVSVQRET 147
                       +T LH A I   V++V  +L+             +     ++    E 
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123

Query: 148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK--RE--CQVVELL 203
            L  A      E+VR L++        +I   +D  GNT LH+   +  +   CQ+  LL
Sbjct: 124 PLSFAACVGSEEIVRLLIE-----HGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLL 177

Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           LS+             N+ GLT            G+  + +       
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFK----LAGVEGNIVMFQHLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 96.5 bits (241), Expect = 4e-23
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 18/150 (12%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWI 168
           ++PL  AA +  V  +S++L   G    +V  +    ET LH+A   +  E    L++  
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEG--C-EVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 169 RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN-------ASGGLEVNATNH 221
            ++  E +   +  +G TALH+A   +   +V  LL+ GA+       +      +   +
Sbjct: 61  PELVFEPM-TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 222 SGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            G       LSF +  G  EI  +    GA
Sbjct: 120 YGEHP----LSFAACVGSEEIVRLLIEHGA 145

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 15/89 (16%)

Query: 184 GNTALHLATWKRECQVV-ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREI 242
             + L LA  + + Q + +LL   G        V+     G TAL +     +   + E 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCE------VHQRGAMGETALHIA----ALYDNLEA 52

Query: 243 EEIFWSAGAMRMRDLTLSPIRSPEPHGQT 271
             +   A      +L   P+ S    GQT
Sbjct: 53  AMVLMEAAP----ELVFEPMTSELYEGQT 77

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  118 bits (299), Expect = 1e-30
 Identities = 42/227 (18%), Positives = 73/227 (32%), Gaps = 43/227 (18%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAK--EVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
            LH+A  + H  F+  ++            N  G + +H+A+  G+   V  L       
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL------Y 65

Query: 104 CH-----LQGPERKTPLHFAAIKGRVDVVSEMLSA-----------YGECAEDVSVQ--R 145
                  +      T LH A           +L             Y   ++D +     
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 146 ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS 205
                 +  N + E      D      +  +   ++  G+T LH+A   ++ ++V LL  
Sbjct: 126 APAAVDSQPNPENEEEPRDED-----WRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 206 HGANASGGLEVNA-TNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            GA+      +N      G T     L    EA    + E+   AGA
Sbjct: 180 AGAD------LNKPEPTCGRTP----LHLAVEAQAASVLELLLKAGA 216

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  117 bits (295), Expect = 4e-30
 Identities = 33/205 (16%), Positives = 59/205 (28%), Gaps = 42/205 (20%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVN------------QDGFSPMHMASANGQIDVV 93
            LH+A           +++ +P   ++ +                +P  + S     +  
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 94  RGLMKFDQKLCH-----LQGPERKTPLHFAAIKGRVDVVSEMLSAYG----ECAEDVSVQ 144
                             +  +  TPLH A I    ++V  +L   G    +        
Sbjct: 141 EPRD-----EDWRLQLEAENYDGHTPLHVAVIHKDAEMV-RLLRDAGADLNKPEPT---C 191

Query: 145 RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL 204
             T LHLAV+     V+  L+         +    +   G T L  A  +    +  LL 
Sbjct: 192 GRTPLHLAVEAQAASVLELLLK-----AGADP-TARMYGGRTPLGSALLRPNPILARLLR 245

Query: 205 SHGANASGGLEVNATNHSGLTALDV 229
           +HGA               L+    
Sbjct: 246 AHGAP------EPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  102 bits (257), Expect = 7e-25
 Identities = 42/193 (21%), Positives = 62/193 (32%), Gaps = 27/193 (13%)

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKF--DQKLCHLQGPERKTPLHFAAIKGRVDVVSE 129
            V +DG + +H+A  +     +  L+ F    +   LQ    +T LH AAI G    V E
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV-E 62

Query: 130 MLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVD-------WIRDVKKENILNM 179
            L A G  A  V V      T LHLA +         L+           D       + 
Sbjct: 63  KLYAAG--A-GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 180 KDKQGNTALHLATWKR-ECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG 238
                +    + +    E +                 + A N+ G T     L       
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ------LEAENYDGHTP----LHVAVIHK 169

Query: 239 DREIEEIFWSAGA 251
           D E+  +   AGA
Sbjct: 170 DAEMVRLLRDAGA 182

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 94.1 bits (235), Expect = 6e-22
 Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 7/162 (4%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           P  V S     +  +          +  N DG +P+H+A  +   ++VR L      L  
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
            +    +TPLH A       V+ E+L   G           T L  A+      + R L 
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVL-ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
                               +    +    +    +    + 
Sbjct: 246 A-----HGAPE-PEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 176 ILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPS 235
           +     + G+TALHLA   +    ++ LL   A       ++  N  G TA    L   +
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---YLDLQNDLGQTA----LHLAA 53

Query: 236 EAGDREIEEIFWSAGA 251
             G+    E  ++AGA
Sbjct: 54  ILGEASTVEKLYAAGA 69

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  117 bits (296), Expect = 1e-30
 Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 33/192 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            L             E I        + N    + +  +S  G+ D+V+ ++        
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMR--VKFNPLPLALLLDSSLEGEFDLVQRIIY------- 58

Query: 106 LQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKN 155
            +   P        T LH A   G  ++V + L  +G    +V+       T LH A   
Sbjct: 59  -EVDDPSLPNDEGITALHNAVCAGHTEIV-KFLVQFG--V-NVNAADSDGWTPLHCAASC 113

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
           N  +V + LV+    V     +   D Q          +   Q  + L            
Sbjct: 114 NNVQVCKFLVESGAAV---FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK------ 164

Query: 216 VNATNHSGLTAL 227
           +   N   + AL
Sbjct: 165 MGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  107 bits (269), Expect = 5e-27
 Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 36/186 (19%)

Query: 76  DGFSPMHMASANGQIDVVRGLM------KFDQKLCHLQGPERKTPLHFAAIKGRVDVVSE 129
            G   +               +      KF+        P     L  ++++G  D+V +
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--------PLPLALLLDSSLEGEFDLV-Q 54

Query: 130 MLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT 186
            +    +   D S+      T LH AV     E+V+ LV         N+ N  D  G T
Sbjct: 55  RIIYEVD---DPSLPNDEGITALHNAVCAGHTEIVKFLVQ-----FGVNV-NAADSDGWT 105

Query: 187 ALHLATWKRECQVVELLLSHGANASGGLEVNATNHS-GLTALDVLLSFPSEAGDREIEEI 245
            LH A      QV + L+  GA       V A  +S   TA D       E G  +  + 
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAA------VFAMTYSDMQTAAD--KCEEMEEGYTQCSQF 157

Query: 246 FWSAGA 251
            +    
Sbjct: 158 LYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 97.3 bits (243), Expect = 3e-23
 Identities = 39/212 (18%), Positives = 65/212 (30%), Gaps = 45/212 (21%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            L  +S  G  D V+ II    D     N +G + +H A   G  ++V+ L++       
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQ------- 91

Query: 106 LQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE------TVLHLA 152
             G           TPLH AA    V V  + L   G  A  V                 
Sbjct: 92  -FGVNVNAADSDGWTPLHCAASCNNVQVC-KFLVESG--A-AVFAMTYSDMQTAADKCEE 146

Query: 153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA---- 208
           ++    +  + L        +E +  + +K    AL     +      EL +  G     
Sbjct: 147 MEEGYTQCSQFLYG-----VQEKM-GIMNKGVIYALWDYEPQ---NDDELPMKEGDCMTI 197

Query: 209 ------NASGGLEVNATNHSGLTALDVLLSFP 234
                 +          +  G    ++L  +P
Sbjct: 198 IHREDEDEIEWWWARLNDKEGYVPRNLLGLYP 229

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 11/71 (15%)

Query: 181 DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDR 240
           +  G  +L         +     ++HG        V       L      L   S  G+ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMR------VKFNPL-PLAL----LLDSSLEGEF 50

Query: 241 EIEEIFWSAGA 251
           ++ +       
Sbjct: 51  DLVQRIIYEVD 61

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  116 bits (294), Expect = 2e-30
 Identities = 41/233 (17%), Positives = 69/233 (29%), Gaps = 54/233 (23%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
              +    GH         +  D    V  +  +P   A+       +  L         
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQL--------- 64

Query: 106 LQG-------PERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ----RETVLHLAVK 154
           L+           +T L F A  G    V  +L+  G  A D+  +      T LH+A  
Sbjct: 65  LEDRDVDAVDENGRTALLFVAGLGSDKCV-RLLAEAG--A-DLDHRDMRGGLTALHMAAG 120

Query: 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN----- 209
             + EVV ALV+        +I  ++D++G TAL LA    +       +  G       
Sbjct: 121 YVRPEVVEALVE-----LGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 174

Query: 210 -----------ASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
                       +   E+      G     ++          + E +     A
Sbjct: 175 VINVLEGQVFEYAEVDEIVEKRGKGKDVEYLV----RWKDGGDCEWVKGVHVA 223

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  108 bits (273), Expect = 2e-27
 Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 49/195 (25%)

Query: 46  PLHVASAYGHVDFVKEIIRL-----KPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF- 99
           P   A+        ++ +         D    V+++G + +   +  G    VR L +  
Sbjct: 48  PWWTAARKAD----EQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 100 ------DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLH 150
                 D +          T LH AA   R +VV E L   G  A D+ V+     T L 
Sbjct: 101 ADLDHRDMR-------GGLTALHMAAGYVRPEVV-EALVELG--A-DIEVEDERGLTALE 149

Query: 151 LAVKNNQFEVVRALVDWIRDVKKENI----------------LNMKDKQGNTALHLATWK 194
           LA +  +       + + R +  E +                +  K  +G    +L  WK
Sbjct: 150 LAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWK 209

Query: 195 RECQVVELLLSHGAN 209
                  +   H A 
Sbjct: 210 DGGDCEWVKGVHVAE 224

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  103 bits (260), Expect = 1e-25
 Identities = 36/187 (19%), Positives = 60/187 (32%), Gaps = 31/187 (16%)

Query: 70  AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP----ERKTPLHFAAIKGRVD 125
                 +G     +   +G                         E +TP   AA K    
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPS--------SYIAADVVSEYETPWWTAARKADEQ 59

Query: 126 VVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD-KQG 184
            +S++L       + V     T L         + VR L +        ++ + +D + G
Sbjct: 60  ALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-----AGADL-DHRDMRGG 111

Query: 185 NTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEE 244
            TALH+A      +VVE L+  GA+      +   +  GLTAL++      E      + 
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALELA----REILKTTPKG 161

Query: 245 IFWSAGA 251
                G 
Sbjct: 162 NPMQFGR 168

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 23/175 (13%), Positives = 48/175 (27%), Gaps = 40/175 (22%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            L   +  G    V+ +     D      + G + +HMA+   + +VV  L      +  
Sbjct: 80  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL------VEL 133

Query: 106 -----LQGPERKTPLHFAAIKGRVDVV----------------SEMLSAYGECAEDVSV- 143
                ++     T L  A    +                    + +     E AE   + 
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV 193

Query: 144 ----QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK 194
               + + V +L    +  +        + +         KD +    L  A  +
Sbjct: 194 EKRGKGKDVEYLVRWKDGGDCEWVKGVHVAED------VAKDYE--DGLEYAVAE 240

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 27/99 (27%)

Query: 176 ILNMKDKQGNTALHLATWKRECQVVELLLSHGA--NASG--------------------- 212
           I +    +G     +                 A   +                       
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE 66

Query: 213 GLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
             +V+A + +G TA    L F +  G  +   +   AGA
Sbjct: 67  DRDVDAVDENGRTA----LLFVAGLGSDKCVRLLAEAGA 101

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  114 bits (288), Expect = 5e-30
 Identities = 37/216 (17%), Positives = 81/216 (37%), Gaps = 45/216 (20%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
              +           + +    +  +  +    +P+ +A   G  + +  L++       
Sbjct: 11  VEKIKDEKSI----NQNLDFLRN-YR--DSYNRTPLMVACMLGMENAIDKLVE------- 56

Query: 106 LQGP-------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKN 155
                      E  T L +A    R+ +  E L + G  + +V+ +    +T L  ++  
Sbjct: 57  -NFDKLEDKDIEGSTALIWAVKNNRLGIA-EKLLSKG--S-NVNTKDFSGKTPLMWSIIF 111

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
              E+   L++        N+ N ++ +G T L +A+     ++V+ LL  GA+      
Sbjct: 112 GYSEMSYFLLE-----HGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD------ 159

Query: 216 VNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           ++A + +GLTA           G +E+ +IF     
Sbjct: 160 ISARDLTGLTAEA----SARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.2 bits (220), Expect = 2e-20
 Identities = 31/143 (21%), Positives = 47/143 (32%), Gaps = 29/143 (20%)

Query: 112 KTPLHFAA---IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWI 168
           +          I   +D +     +Y            T L +A        +  LV+  
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYRDSYN----------RTPLMVACMLGMENAIDKLVE-- 56

Query: 169 RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
                + +   KD +G+TAL  A       + E LLS G+N      VN  + SG T   
Sbjct: 57  ---NFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------VNTKDFSGKTP-- 104

Query: 229 VLLSFPSEAGDREIEEIFWSAGA 251
             L +    G  E+       GA
Sbjct: 105 --LMWSIIFGYSEMSYFLLEHGA 125

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  113 bits (285), Expect = 9e-30
 Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 34/175 (19%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
              +    GH         +  D    V  +  +P   A+       +  L         
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQL--------- 63

Query: 106 LQGP-------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ----RETVLHLAVK 154
           L+           +T L F A  G    V  +L+  G  A D+  +      T LH+A  
Sbjct: 64  LEDRDVDAVDENGRTALLFVAGLGSDKCV-RLLAEAG--A-DLDHRDMRGGLTALHMAAG 119

Query: 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
             + EVV ALV+        +I  ++D++G TAL LA    +       +  G  
Sbjct: 120 YVRPEVVEALVE-----LGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (262), Expect = 2e-26
 Identities = 36/187 (19%), Positives = 59/187 (31%), Gaps = 31/187 (16%)

Query: 70  AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP----ERKTPLHFAAIKGRVD 125
                 +G     +   +G                         E +TP   AA K    
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPS--------SYIAADVVSEYETPWWTAARKADEQ 58

Query: 126 VVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD-KQG 184
            +S++L       + V     T L         + VR L +        ++ + +D + G
Sbjct: 59  ALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE-----AGADL-DHRDMRGG 110

Query: 185 NTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEE 244
            TALH+A      +VVE L+  GA+      +   +  GLTAL+       E      + 
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALE----LAREILKTTPKG 160

Query: 245 IFWSAGA 251
                G 
Sbjct: 161 NPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 25/145 (17%)

Query: 46  PLHVASAYGHVDFVKEIIR-LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF----- 99
           P   A+       + +++     D    V+++G + +   +  G    VR L +      
Sbjct: 47  PWWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103

Query: 100 --DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVK 154
             D +          T LH AA   R +VV E L   G  A D+ V+     T L LA +
Sbjct: 104 HRDMR-------GGLTALHMAAGYVRPEVV-EALVELG--A-DIEVEDERGLTALELARE 152

Query: 155 NNQFEVVRALVDWIRDVKKENILNM 179
             +       + + R +  E ++N+
Sbjct: 153 ILKTTPKGNPMQFGRRIGLEKVINV 177

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 27/103 (26%)

Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA--NASG----------------- 212
             + I +    +G     +                 A   +                   
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALS 61

Query: 213 ----GLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
                 +V+A + +G TA    L F +  G  +   +   AGA
Sbjct: 62  QLLEDRDVDAVDENGRTA----LLFVAGLGSDKCVRLLAEAGA 100

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  114 bits (288), Expect = 2e-29
 Identities = 42/262 (16%), Positives = 78/262 (29%), Gaps = 60/262 (22%)

Query: 10  RRLIAAALTGDVQTLQQL---FVENPLILHTPAFA--SAGN-PLHVASA---YGHVDFVK 60
            RL +    G  + L  L      N   L   A+   S G   L  A      G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 61  EIIRLKPDFA----------KEVNQDGFSPMHMASANGQIDVVRGLMK------------ 98
            ++++  D             +    G S +H+A     +  V+ L++            
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 99  FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ-------------- 144
           F QK         + PL  AA   + DVV   L         +                 
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVV-TYLLENPHQPASLEATDSLGNTVLHALVMI 182

Query: 145 -----RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV 199
                  + L + + +   ++   L   ++         + + QG T L LA  + + ++
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTVQLE------EISNHQGLTPLKLAAKEGKIEI 236

Query: 200 VELLLSHGANASGGLEVNATNH 221
              +L    +   G   +  +H
Sbjct: 237 FRHILQREFS---GAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 70.2 bits (172), Expect = 9e-14
 Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 30/164 (18%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR-------ETVLHLAV---KNNQFEVV 161
           +  L     +G  + ++ +L      ++ ++          +T L  AV   ++     +
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 162 RALVDWIRDVKKENIL-----NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
             L+   +D      L       +  QG++ALH+A  KR  Q V+LL+ +GA+      V
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD------V 116

Query: 217 NATNHSGLTALDVL---------LSFPSEAGDREIEEIFWSAGA 251
           +                      LS  +     ++         
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  111 bits (280), Expect = 3e-29
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 24/170 (14%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           G+ L  A+A G V  V+ ++  +      +N+ G + + +    G   +   L+K     
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLK----- 56

Query: 104 CHLQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN 156
              QG  P  +     +P+H AA  G +D + ++L  +G             +HLAV+  
Sbjct: 57  ---QGASPNVQDTSGTSPVHDAARTGFLDTL-KVLVEHGADVNVPDGTGALPIHLAVQEG 112

Query: 157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
              VV  L        + ++ + +D +G T L LA  +    +V++L  H
Sbjct: 113 HTAVVSFLA------AESDL-HRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 95.9 bits (240), Expect = 9e-24
 Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 25/158 (15%)

Query: 77  GFSPMHMASANGQIDVVRGLMKFDQKLCHL--QGPERKTPLHFAAIKGRVDVVSEMLSAY 134
               +  A+A G +  VR L+   ++L H        KT L      G   +    L   
Sbjct: 2   AGDRLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMM-FGSTAIA-LELLKQ 57

Query: 135 GECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
           G  A   +VQ     + +H A +    + ++ LV+        ++ N+ D  G   +HLA
Sbjct: 58  G--A-SPNVQDTSGTSPVHDAARTGFLDTLKVLVE-----HGADV-NVPDGTGALPIHLA 108

Query: 192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
             +    VV  L +  ++      ++  +  GLT L++
Sbjct: 109 VQEGHTAVVSFLAAE-SD------LHRRDARGLTPLEL 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  110 bits (278), Expect = 4e-29
 Identities = 48/180 (26%), Positives = 68/180 (37%), Gaps = 39/180 (21%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP------ERKTPLHFAAIKGRVDVVSE 129
           D    +  A+  GQ D VR LM          G          +PLH AA  G      E
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMA--------NGAPFTTDWLGTSPLHLAAQYGHFSTT-E 51

Query: 130 MLSAYG----ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN 185
           +L   G       +       T LH+A       +V  L+         ++ N KD    
Sbjct: 52  VLLRAGVSRDARTKV----DRTPLHMAASEGHANIVEVLLK-----HGADV-NAKDMLKM 101

Query: 186 TALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEI 245
           TALH AT     +VVELL+ +GA+      V+  +    TA D       + G+ ++ EI
Sbjct: 102 TALHWATEHNHQEVVELLIKYGAD------VHTQSKFCKTAFD----ISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  102 bits (257), Expect = 4e-26
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 30/170 (17%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           G  L  A+  G  D V+ ++     F    +  G SP+H+A+  G       L++     
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLR----- 55

Query: 104 CHLQGPER-------KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAV 153
               G  R       +TPLH AA +G  ++V E+L  +G  A DV+ +   + T LH A 
Sbjct: 56  ---AGVSRDARTKVDRTPLHMAASEGHANIV-EVLLKHG--A-DVNAKDMLKMTALHWAT 108

Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
           ++N  EVV  L+         ++ + + K   TA  ++       + E+L
Sbjct: 109 EHNHQEVVELLIK-----YGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  110 bits (278), Expect = 6e-29
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 29/175 (16%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           GN L  A+A G ++ +  +++   +     N  G + + +    G  ++ R L+      
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVM-KLGNPEIARRLLL----- 58

Query: 104 CHLQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAV 153
              +G  P+ K       +H AA  G +D + + L  +   A DV+++       LHLA 
Sbjct: 59  ---RGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLEFQ--A-DVNIEDNEGNLPLHLAA 111

Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
           K     VV  LV         N+   ++ +G+TA  LA      +VV L+ ++GA
Sbjct: 112 KEGHLRVVEFLVK----HTASNV-GHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.3 bits (228), Expect = 5e-22
 Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 18/140 (12%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
              L  AA +G ++ +   L          +    T L +    N  E+ R L+      
Sbjct: 6   GNELASAAARGDLEQL-TSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLL----- 58

Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231
           +  N  ++KD+ G   +H A        ++ LL   A+      VN  ++ G       L
Sbjct: 59  RGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD------VNIEDNEGNLP----L 107

Query: 232 SFPSEAGDREIEEIFWSAGA 251
              ++ G   + E      A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.5 bits (130), Expect = 8e-09
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 179 MKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
           M +      L  A  + + + +  LL +  N      VNA N  G TAL
Sbjct: 1   MAEP-WGNELASAAARGDLEQLTSLLQNNVN------VNAQNGFGRTAL 42

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  109 bits (276), Expect = 1e-28
 Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 36/173 (20%)

Query: 68  DFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP-------ERKTPLHFAAI 120
                   D    +  A+  G+ D VR LM          G           TPLH AA 
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMA--------NGADVNAEDASGWTPLHLAAF 56

Query: 121 KGRVDVVSEMLSAYG----ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENI 176
            G +++V E+L   G               T L LA      E+V  L+         ++
Sbjct: 57  NGHLEIV-EVLLKNGADVNAVDHA----GMTPLRLAALFGHLEIVEVLLK-----NGADV 106

Query: 177 LNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
            N  D +G+T LHLA      ++VE+LL +GA+      VNA +  G TA D+
Sbjct: 107 -NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD------VNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  107 bits (271), Expect = 7e-28
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 29/171 (16%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            L  A+  G  D V+ ++    D     +  G++P+H+A+ NG +++V  L+K       
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLK------- 68

Query: 106 LQGP-------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKN 155
             G           TPL  AA+ G +++V E+L   G  A DV+       T LHLA   
Sbjct: 69  -NGADVNAVDHAGMTPLRLAALFGHLEIV-EVLLKNG--A-DVNANDMEGHTPLHLAAMF 123

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
              E+V  L+         ++ N +DK G TA  ++       + E+L   
Sbjct: 124 GHLEIVEVLLK-----NGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.1 bits (199), Expect = 5e-18
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 16/105 (15%)

Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
             L  A +  + + VR L+         ++ N +D  G T LHLA +    ++VE+LL +
Sbjct: 16  KKLLEAARAGRDDEVRILMA-----NGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           GA+      VNA +H+G+T     L   +  G  EI E+    GA
Sbjct: 70  GAD------VNAVDHAGMTP----LRLAALFGHLEIVEVLLKNGA 104

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFD 100
           PLH+A+ +GH++ V+ +++   D     ++ G +   ++  NG  D+   L K +
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  100 bits (251), Expect = 2e-25
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 23/143 (16%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWI 168
           +T LH A+IKG +  V E L   G  + D +V+     T LH A  +   +VV  L+   
Sbjct: 11  ETLLHIASIKGDIPSV-EYLLQNG--S-DPNVKDHAGWTPLHEACNHGHLKVVELLLQ-- 64

Query: 169 RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
               K  + N    Q ++ LH A       +V+LLLS+GA+       NA N  GL  +D
Sbjct: 65  ---HKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS------RNAVNIFGLRPVD 114

Query: 229 VLLSFPSEAGDREIEEIFWSAGA 251
               +  +   + +  +     +
Sbjct: 115 ----YTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 99.4 bits (249), Expect = 4e-25
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 22/143 (15%)

Query: 74  NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--PERK-----TPLHFAAIKGRVDV 126
           N  G + +H+AS  G I  V  L++         G  P  K     TPLH A   G + V
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQ--------NGSDPNVKDHAGWTPLHEACNHGHLKV 58

Query: 127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT 186
           V E+L  +         Q ++ LH A KN   ++V+ L+         +  N  +  G  
Sbjct: 59  V-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS-----YGASR-NAVNIFGLR 111

Query: 187 ALHLATWKRECQVVELLLSHGAN 209
            +     +    ++ L   + ++
Sbjct: 112 PVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 16/89 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A  +GH+  V+ +++ K            SP+H A+ NG +D+V+ L+        
Sbjct: 46  PLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLS------- 97

Query: 106 LQG--PERK-----TPLHFAAIKGRVDVV 127
             G            P+ +   +    ++
Sbjct: 98  -YGASRNAVNIFGLRPVDYTDDESMKSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
            + +G T LH+A+ K +   VE LL +G++       N  +H+G T L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD------PNVKDHAGWTPL 47

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
           PLH A+  GHVD VK ++         VN  G  P+          ++    K
Sbjct: 79  PLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  105 bits (263), Expect = 2e-25
 Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 29/200 (14%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH  ++  +++ VK +++   +     +  G S +  A  +           F+  L +
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSG---TFEALLDY 189

Query: 106 LQGP------ERKTPLHFAA-----------IKGRVDVVSEMLSAYGECAEDVSVQRETV 148
           L           +T LH               K  +D++   +              +  
Sbjct: 190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249

Query: 149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
                   + + +   +D    +   N+LN +D  G+T L++A       +V+ LL +GA
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIA--NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 307

Query: 209 NASGGLEVNATNHSGLTALD 228
           +          N SGL  +D
Sbjct: 308 D------PFIANKSGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 24/207 (11%)

Query: 60  KEIIRLKPDFAKEVN----QDGFSPMHMASANGQIDVVRGLMKF--DQKLCHLQGPERKT 113
           +E+    P+    +N    + G +P+H  ++   +++V+ L+K   ++      G   ++
Sbjct: 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG---ES 166

Query: 114 PLHFAAIKG---RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ----FEVVRALVD 166
            L  A              +L     C         T+LH  +  +         +  +D
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226

Query: 167 WIRD--VKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL 224
            +    VKK+N           +            +   L           +NA + +G 
Sbjct: 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII--ANMLNAQDSNGD 284

Query: 225 TALDVLLSFPSEAGDREIEEIFWSAGA 251
           T L++     +  G+  I +     GA
Sbjct: 285 TCLNIA----ARLGNISIVDALLDYGA 307

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 21/164 (12%), Positives = 46/164 (28%), Gaps = 23/164 (14%)

Query: 45  NPLHVASAYGH---VDFVKEIIRLKPDFAKEVNQDGFSPMH----MASANGQIDVVRGLM 97
           + L  A    +       + ++          +    + +H     +   G     +  +
Sbjct: 166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL 225

Query: 98  KFDQKLCHLQGP-------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RET 147
                    +           K          R D + E L      A  ++ Q    +T
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 285

Query: 148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA 191
            L++A +     +V AL+D+  D        + +K G   +   
Sbjct: 286 CLNIAARLGNISIVDALLDYGADP------FIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD 166
           Q  + +  L         ++ + + +       +     +   H++  +   EV  A  +
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 167 WIRDVKKENILNMK-DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
                 + N+ N+  D+ GNT LH  T     ++V+ L+ HG+N          ++ G +
Sbjct: 119 -----TQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN------RLYGDNMGES 166

Query: 226 AL 227
            L
Sbjct: 167 CL 168

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVN---QDGFSPMHMASANGQIDVVRGLMKF- 99
                        D + E + LK   A  +N    +G + +++A+  G I +V  L+ + 
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 100 -DQKLCHLQGPERKTPLHFAA 119
            D  + +  G     P+ F A
Sbjct: 307 ADPFIANKSG---LRPVDFGA 324

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  102 bits (256), Expect = 2e-25
 Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 21/206 (10%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            LH A + GH + V+ +++L      + +  G+SP+H+A++ G  ++V+ L+     + +
Sbjct: 43  ALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-N 100

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
                  TPLH+AA K R ++   ML   G   +       T +H A      ++V  L+
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIA-VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
            +          N++D +GNT LHLA  +   +  + L++ GA+      +   N    T
Sbjct: 160 FYKAST------NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYIENKEEKT 207

Query: 226 ALDVLLSFPSEAGDREIEEIFWSAGA 251
            L V        G   +     + G 
Sbjct: 208 PLQV------AKGGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 99.6 bits (248), Expect = 3e-24
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 11/164 (6%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH+A++ G  + VK ++         VNQ+G +P+H A++  + ++   L++       
Sbjct: 76  PLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-D 133

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
            +     T +H AA KG + +V  +L  Y         +  T LHLA    + E  + LV
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
                +       +++K+  T L +A       ++   L+ G  
Sbjct: 193 TQGASI------YIENKEEKTPLQVAKGGLG--LILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 99.6 bits (248), Expect = 3e-24
 Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 33/213 (15%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
             ++A +    +  + I+  K   A   +QD  + +H A + G  ++V  L++       
Sbjct: 10  ICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ------- 61

Query: 106 LQGPE-------RKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
             G           +PLH AA  G  ++V + L   G     V+    T LH A   N+ 
Sbjct: 62  -LGVPVNDKDDAGWSPLHIAASAGXDEIV-KALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA 218
           E+   L++   +       + KD    TA+H A  K   ++V +LL + A+       N 
Sbjct: 120 EIAVMLLEGGANP------DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS------TNI 167

Query: 219 TNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
            +  G T     L    +    E  +   + GA
Sbjct: 168 QDTEGNTP----LHLACDEERVEEAKFLVTQGA 196

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 81.5 bits (201), Expect = 7e-18
 Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 17/140 (12%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
               + A      ++  E + A    A        T LH A      E+V  L+      
Sbjct: 8   IMICNLAYSGKLDELK-ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ----- 61

Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231
               + N KD  G + LH+A      ++V+ LL  GA+      VNA N +G T     L
Sbjct: 62  LGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH------VNAVNQNGCTP----L 110

Query: 232 SFPSEAGDREIEEIFWSAGA 251
            + +     EI  +    GA
Sbjct: 111 HYAASKNRHEIAVMLLEGGA 130

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 81.5 bits (201), Expect = 7e-18
 Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 38/188 (20%)

Query: 74  NQDGFSPMHMASANGQIDVVRGLM-------KFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
                   ++A +    ++   ++       + DQ          +T LH+A   G  ++
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQD--------SRTALHWACSAGHTEI 55

Query: 127 VSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQ 183
           V E L   G     V+ +     + LH+A      E+V+AL+     V      N  ++ 
Sbjct: 56  V-EFLLQLG--V-PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV------NAVNQN 105

Query: 184 GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIE 243
           G T LH A  K   ++  +LL  GAN       +A +H   TA    +   +  G+ ++ 
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATA----MHRAAAKGNLKMV 155

Query: 244 EIFWSAGA 251
            I     A
Sbjct: 156 HILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
             +H A+A G++  V  ++  K       + +G +P+H+A    +++  + L+     + 
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASI- 198

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLS 132
           +++  E KTPL  A   G + ++ + L+
Sbjct: 199 YIENKEEKTPLQVAK--GGLGLILKRLA 224

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  103 bits (259), Expect = 3e-25
 Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 48/228 (21%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEV-------NQDGFSPMHMASAN---GQIDVV 93
              +  A A  +   ++ ++       K +        + G + +  A  N   GQ D +
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 94  RGLMKFDQKL----------CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG----ECAE 139
             L+   +K                 + +T LH A  +  + +V  +L   G      A 
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLV-TLLVENGADVQAAAN 132

Query: 140 DVSVQR----------ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALH 189
               ++          E  L LA   NQ  +V+ L   +++  +   ++ +D  GNT LH
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL---LQNSWQPADISARDSVGNTVLH 189

Query: 190 LA---------TWKRECQVVELLLSHGAN-ASGGLEVNATNHSGLTAL 227
                        K    +   +L  GA           TN  GLT L
Sbjct: 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL 237

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  103 bits (258), Expect = 3e-25
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 40/203 (19%)

Query: 46  PLHVASA---YGHVDFVKEII----------RLKPDFAKEVNQDGFSPMHMASANGQIDV 92
            L  A      G  D +  ++          +       +    G + +H+A     + +
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 93  VRGLMK-------------FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAE 139
           V  L++             F +          + PL  AA   ++ +V + L        
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV-KFLLQNSWQPA 175

Query: 140 DVSVQRE---TVLHLAVKNNQFEVVR-----ALVDWIRDVKKE-----NILNMKDKQGNT 186
           D+S +     TVLH  V+     V       ++ + I  +  +      +  + +++G T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 187 ALHLATWKRECQVVELLLSHGAN 209
            L LA    +  V+  +L    +
Sbjct: 236 PLALAASSGKIGVLAYILQREIH 258

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 82.9 bits (205), Expect = 5e-18
 Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 43/179 (24%)

Query: 46  PLHVASAYGHVDFVKEIIR-------------LKPDFAKEVNQDGFSPMHMASANGQIDV 92
            LH+A    ++  V  ++               K    +     G  P+ +A+   Q+ +
Sbjct: 104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 93  VRGLMKFDQKLCHL--QGPERKTPLHFAAIKGRVDVVSEM---------------LSAYG 135
           V+ L++   +   +  +     T LH         V +                 L    
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL 223

Query: 136 ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK 194
           +  E  + +  T L LA  + +  V+  ++              ++       H A   
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQ-------------REIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 31/167 (18%)

Query: 112 KTPLHFAAIKGRVDVVS---EMLSAYGECAEDVSVQR----ETVLHLAV---KNNQFEVV 161
           +  +  A  +     +      L    +   D   +     +T L  A+    N Q + +
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 162 RALVDWIRDVKKENIL-----NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
             L+D  R                  +G TALH+A  +R   +V LL+ +GA+      V
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD------V 127

Query: 217 NATNHSGLTALDVL----------LSFPSEAGDREIEEIFWSAGAMR 253
            A  +                   LS  +      I +         
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP 174

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 36/133 (27%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFA------SAGN-PLHVASAYGHVD-----FV 59
           L  AA T  +  ++ L      + ++   A      S GN  LH              FV
Sbjct: 152 LSLAACTNQLAIVKFL------LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205

Query: 60  KEIIRLKPDFAKEV----------NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP 109
             +         ++          N+ G +P+ +A+++G+I V+  +++        +  
Sbjct: 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ--------REI 257

Query: 110 ERKTPLHFAAIKG 122
                 H AA   
Sbjct: 258 HEPECRHAAAHHH 270

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 98.3 bits (246), Expect = 1e-24
 Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 36/164 (21%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--PERK-----TPLHFAAIKGRVDVVS 128
                +  A+A G+++ VR L++         G  P         P+      G   V  
Sbjct: 11  PSADWLATAAARGRVEEVRALLE--------AGANPNAPNSYGRRPIQVMM-MGSARVA- 60

Query: 129 EMLSAYGECAEDVSVQ----RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG 184
           E+L  +G  A + +          +H A +    + +  L      +      +++D  G
Sbjct: 61  ELLLLHG--A-EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL------DVRDAWG 111

Query: 185 NTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
              + LA       V   L +             +NH+ + A +
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAAGG------TRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.8 bits (211), Expect = 8e-20
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 19/140 (13%)

Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
             L  AA +GRV+ V   L   G      +      + + +  +   V   L+       
Sbjct: 14  DWLATAAARGRVEEV-RALLEAGANPNAPNSYGRRPIQVMMMGSA-RVAELLLL-----H 66

Query: 173 KENILNMKDKQGNT-ALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231
                N  D    T  +H A  +     + +L   GA       ++  +  G   +D+  
Sbjct: 67  GAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR------LDVRDAWGRLPVDL-- 117

Query: 232 SFPSEAGDREIEEIFWSAGA 251
               E G R++     +A  
Sbjct: 118 --AEELGHRDVARYLRAAAG 135

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           P+H A+  G +D +  + R         +  G  P+ +A   G  DV R L         
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYL------RAA 133

Query: 106 LQGPERKTPLHFAAIKGRVDVV 127
             G          A +G  D+ 
Sbjct: 134 AGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 6/50 (12%)

Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
               +     L  A  +   + V  LL  GAN       NA N  G   +
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGAN------PNAPNSYGRRPI 49

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 97.4 bits (244), Expect = 1e-24
 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 28/143 (19%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--PERK-----TPLHFAAIKGRVDVVS 128
           +G +P+H+A+ NG ++VV+ L++         G     K     TPLH AA  G ++VV 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE--------AGADVNAKDKNGRTPLHLAARNGHLEVV- 51

Query: 129 EMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN 185
           ++L   G  A DV+ +     T LHLA +N   EVV+ L++        ++ N KDK G 
Sbjct: 52  KLLLEAG--A-DVNAKDKNGRTPLHLAARNGHLEVVKLLLE-----AGADV-NAKDKNGR 102

Query: 186 TALHLATWKRECQVVELLLSHGA 208
           T LHLA      +VV+LLL  GA
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 95.1 bits (238), Expect = 8e-24
 Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 17/140 (12%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
           +TPLH AA  G ++VV ++L   G           T LHLA +N   EVV+ L++     
Sbjct: 3   RTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE----- 56

Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231
              ++ N KDK G T LHLA      +VV+LLL  GA+      VNA + +G T     L
Sbjct: 57  AGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTP----L 105

Query: 232 SFPSEAGDREIEEIFWSAGA 251
              +  G  E+ ++   AGA
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.7 bits (128), Expect = 7e-09
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 184 GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIE 243
           G T LHLA      +VV+LLL  GA+      VNA + +G T     L   +  G  E+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTP----LHLAARNGHLEVV 51

Query: 244 EIFWSAGA 251
           ++   AGA
Sbjct: 52  KLLLEAGA 59

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  103 bits (258), Expect = 2e-24
 Identities = 38/244 (15%), Positives = 69/244 (28%), Gaps = 37/244 (15%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF-A 70
              AA  G +  L +L    P  +     A   +   +A+  GH+  +  +  L P    
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 71  KEVNQDGFSPMHMASA-NGQIDVVRGLMKFDQ------------------KLCHLQG--- 108
             +  + +     A+   G  +V+  L+                                
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 251

Query: 109 PERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ---FEVVRALV 165
            E       +   G  D+V++     G            +L   ++ N     + +R L+
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGF----------YMLRNLIRRNDEVLLDDIRFLL 301

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
             I  +K            N  L LA          LLLS  +  +     N   +    
Sbjct: 302 S-IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGG 360

Query: 226 ALDV 229
            LD+
Sbjct: 361 RLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 95.8 bits (238), Expect = 7e-22
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 11/194 (5%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDF-AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
               +A+  GH+  +  +  L P      +  + +    +A+ NG + V+  L +     
Sbjct: 130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189

Query: 104 CHLQGPERK-TPLHFAAI-KGRVDVVSEMLS-----AYGECAEDVSVQRETVLHLAVKNN 156
                         +AA+ +G  +V++ +L      AY E  E    ++     +A   N
Sbjct: 190 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN 249

Query: 157 QFEVVRALVDW-IRDVKKENILNMKDKQGNTALHLATWKRECQVVELL--LSHGANASGG 213
           + + +         D   + +   +  QG   L     + +  +++ +  L         
Sbjct: 250 RLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL 309

Query: 214 LEVNATNHSGLTAL 227
                        L
Sbjct: 310 APTATIPGDANELL 323

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 81.1 bits (200), Expect = 7e-17
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 24/218 (11%)

Query: 41  ASAGNPLHVASAYGH---VDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLM 97
             +     VA+  G    +D +  ++       K +  + +    +A+ NG + V+  L 
Sbjct: 90  IKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLC 148

Query: 98  KF-DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGE-CAEDVSVQRETVLHL-AVK 154
           +    ++  +   E       AA  G + V++ +           +  +        AV 
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 208

Query: 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS-----HGAN 209
                V+  L      +    +L   +                + V  L         +N
Sbjct: 209 RGHHNVINFL------LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262

Query: 210 ASGGLEV--NATNHSGLTALDVLLSFPSEAGDREIEEI 245
             G  ++   +    G   L  L        D  + + 
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNL----IRRNDEVLLDD 296

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 66.5 bits (162), Expect = 4e-12
 Identities = 29/229 (12%), Positives = 59/229 (25%), Gaps = 52/229 (22%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASA-YGHVDFVKEIIRLKPDFA 70
              AA  G +  L +L    P        A        A+   GH + +  ++      A
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226

Query: 71  K---------------------EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP 109
                                    ++      +++ +G  D+V    K +         
Sbjct: 227 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT---KSECLQGF---- 279

Query: 110 ERKTPLHFAAIKG---RVDVVSEMLSA----YGECAEDVSVQRETVLHLAVKNNQFEVVR 162
                L     +     +D +  +LS            +      +L LA++        
Sbjct: 280 ---YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336

Query: 163 ALVDW--IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
            L+    +  + K N   + +  G   L             + L H  +
Sbjct: 337 LLLSIPSVLALTKANNYYINETGGRLDL-----------RAVALEHHHH 374

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 99.5 bits (248), Expect = 6e-24
 Identities = 43/261 (16%), Positives = 80/261 (30%), Gaps = 56/261 (21%)

Query: 9   DRR-LIAAALTGDVQTLQQLFVENPLILH-------TPAFASAGN-PLHVA---SAYGHV 56
           +R  L      G    L+ L +   L+ H            S G   L  A    + G  
Sbjct: 5   NRPILFDIVSRGSPDGLEGL-LSF-LLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRN 62

Query: 57  DFVKEIIRLKPDFA----------KEVNQDGFSPMHMASANGQIDVVRGLMK-------- 98
           D +  ++ +               ++V   G + +H+A        V  L++        
Sbjct: 63  DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122

Query: 99  -----FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLH 150
                F  K         + PL  AA   +  +V   L+  G    D+  Q     TVLH
Sbjct: 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV-HYLTENGHKQADLRRQDSRGNTVLH 181

Query: 151 LAV--KNNQFEVVRALVDWIRDV--------KKENILNMKDKQGNTALHLATWKRECQVV 200
             V   +N  E  + +      +           N+  + +  G + L +A    +  + 
Sbjct: 182 ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241

Query: 201 ELLLSHGANASGGLEVNATNH 221
           + ++          +  A +H
Sbjct: 242 QHIIRREIA-----DAAAHHH 257

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 67.9 bits (166), Expect = 6e-13
 Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 31/167 (18%)

Query: 112 KTPLHFAAIKGRVDVVSEM---LSAYGECAEDVSVQR----ETVLHLAVKNNQF---EVV 161
           +  L     +G  D +  +   L  + +   D   +     +T L  A+ N      + +
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 162 RALVDWIRDVKKENIL-----NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEV 216
             L+D                     +G TALH+A  +R    VELL+  GA+      V
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD------V 119

Query: 217 NATNHSGLTALDVL----------LSFPSEAGDREIEEIFWSAGAMR 253
           +A                      LS  +      I       G  +
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.9 bits (247), Expect = 6e-24
 Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 33/192 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            L  A+  G ++ V++ ++   D   + N++G + +H A       +V  L+        
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLIT------- 75

Query: 106 LQG-------PERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ-RETVLHLA--VKN 155
             G           TPLH AA      +    L  +G      ++    T        + 
Sbjct: 76  -AGANVNSPDSHGWTPLHCAASCNDTVIC-MALVQHGAAIFATTLSDGATAFEKCDPYRE 133

Query: 156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
              +    L D      ++++  + +     AL   + +      EL    G +      
Sbjct: 134 GYADCATYLAD-----VEQSM-GLMNSGAVYALWDYSAE---FGDELSFREGESV----T 180

Query: 216 VNATNHSGLTAL 227
           V   +    T  
Sbjct: 181 VLRRDGPEETDW 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 91.2 bits (227), Expect = 3e-21
 Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 37/171 (21%)

Query: 70  AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--PERK-----TPLHFAAIKG 122
           A+    +    +  A+  G+++VV+  +K        +   P +      T LH A    
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVK--------EMNDPSQPNEEGITALHNAICGA 65

Query: 123 RVDVVSEMLSAYG----ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILN 178
              +V + L   G               T LH A   N   +  ALV          I  
Sbjct: 66  NYSIV-DFLITAGANVNSPDSH----GWTPLHCAASCNDTVICMALVQ-----HGAAIFA 115

Query: 179 MKDKQGNTALHLATWKREC--QVVELLLSHGANASGGLEVNATNHSGLTAL 227
                G TA       RE        L     +      +   N   + AL
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQS------MGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 89.2 bits (222), Expect = 1e-20
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 16/141 (11%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
              L  AA+ G ++VV +            + +  T LH A+    + +V  L+      
Sbjct: 22  LVLLLDAALTGELEVV-QQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT----- 75

Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS-GLTALDVL 230
              N+ N  D  G T LH A    +  +   L+ HGA       + AT  S G TA +  
Sbjct: 76  AGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAA------IFATTLSDGATAFE-- 126

Query: 231 LSFPSEAGDREIEEIFWSAGA 251
              P   G  +          
Sbjct: 127 KCDPYREGYADCATYLADVEQ 147

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 5/118 (4%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA--NGQIDVVRGLMKFDQKL 103
           PLH A++         +++           DG +          G  D    L   +Q +
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149

Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
             L        L   +     D +S                 ET    A  + Q   V
Sbjct: 150 -GLMNSGAVYALWDYS-AEFGDELSFREGESVT-VLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 13/77 (16%)

Query: 178 NMKDKQGN---TALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234
               +        L  A    E +VV+  +    +       +  N  G+TA    L   
Sbjct: 12  RKARRARLNPLVLLLDAALTGELEVVQQAVKEMND------PSQPNEEGITA----LHNA 61

Query: 235 SEAGDREIEEIFWSAGA 251
               +  I +   +AGA
Sbjct: 62  ICGANYSIVDFLITAGA 78

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 94.0 bits (235), Expect = 2e-23
 Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 19/120 (15%)

Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFEVVRALVDWIR 169
               +A   G +D V +   A GE   DV+   E     LH A    Q E++  L+    
Sbjct: 9   KEFMWALKNGDLDEV-KDYVAKGE---DVNRTLEGGRKPLHYAADCGQLEILEFLLL--- 61

Query: 170 DVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
             K  +I N  DK   T L  A ++     V+LLLS GA+             GLTA + 
Sbjct: 62  --KGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD------KTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 23/128 (17%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
                A   G +D VK+ +    D      + G  P+H A+  GQ++++  L+       
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLL------ 61

Query: 105 HLQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVK 154
             +G           TPL  A  +G V  V ++L + G  A D +V+     T       
Sbjct: 62  --KGADINAPDKHHITPLLSAVYEGHVSCV-KLLLSKG--A-DKTVKGPDGLTAFEATDN 115

Query: 155 NNQFEVVR 162
                +++
Sbjct: 116 QAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGD 239
                +     A    +   V+  ++ G +      VN T   G       L + ++ G 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGED------VNRTLEGGRKP----LHYAADCGQ 52

Query: 240 REIEEIFWSAGA 251
            EI E     GA
Sbjct: 53  LEILEFLLLKGA 64

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 93.2 bits (233), Expect = 3e-23
 Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 21/120 (17%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYG----ECAEDVSVQRETVLHLAVKNNQFEVVRALVDW 167
            TPLH AA  G  + V + L + G      ++D      T LHLA KN   E+V+ L+  
Sbjct: 10  NTPLHNAAKNGHAEEV-KKLLSKGADVNARSKD----GNTPLHLAAKNGHAEIVKLLLA- 63

Query: 168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
               K  ++ N + K GNT  HLA      ++V+LL + GA+      VNA +       
Sbjct: 64  ----KGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD------VNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 66.6 bits (164), Expect = 9e-14
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 48/147 (32%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A+  GH + VK+++    D     ++DG                            
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGAD-VNARSKDG---------------------------- 42

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVR 162
                  TPLH AA  G  ++V ++L A G  A DV+ +     T  HLA KN   E+V+
Sbjct: 43  ------NTPLHLAAKNGHAEIV-KLLLAKG--A-DVNARSKDGNTPEHLAKKNGHHEIVK 92

Query: 163 ALVDWIRDVKKENILNMKDKQGNTALH 189
            L       K  ++ N +    +   H
Sbjct: 93  LLDA-----KGADV-NARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.4 bits (140), Expect = 1e-10
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
               K GNT LH A      + V+ LLS GA+      VNA +  G T     L   ++ 
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTP----LHLAAKN 52

Query: 238 GDREIEEIFWSAGA 251
           G  EI ++  + GA
Sbjct: 53  GHAEIVKLLLAKGA 66

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.8 bits (232), Expect = 7e-23
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
             L  AA  G+ D V  +L A G           T L+LA  +   E+V  L+       
Sbjct: 16  KKLLEAARAGQDDEV-RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-----N 69

Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
             ++ N  D  G T LHLA +    ++ E+LL HGA+      VNA +  G TA 
Sbjct: 70  GADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD------VNAQDKFGKTAF 117

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 87.4 bits (218), Expect = 6e-21
 Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 28/141 (19%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG-------PERKTPLHFAAIKGRVDVVS 128
           D    +  A+  GQ D VR LM          G           TPL+ A   G +++V 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMA--------NGADVNAKDEYGLTPLYLATAHGHLEIV- 63

Query: 129 EMLSAYGECAEDVSVQ---RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN 185
           E+L   G  A DV+       T LHLA      E+   L+         ++ N +DK G 
Sbjct: 64  EVLLKNG--A-DVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-----HGADV-NAQDKFGK 114

Query: 186 TALHLATWKRECQVVELLLSH 206
           TA  ++       + E+L   
Sbjct: 115 TAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.4 bits (197), Expect = 5e-18
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 16/105 (15%)

Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
             L  A +  Q + VR L+         ++ N KD+ G T L+LAT     ++VE+LL +
Sbjct: 16  KKLLEAARAGQDDEVRILMA-----NGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           GA+      VNA +  G T     L   +  G  EI E+    GA
Sbjct: 70  GAD------VNAVDAIGFTP----LHLAAFIGHLEIAEVLLKHGA 104

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 175 NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP 234
           +  +         L  A    +   V +L+++GA+      VNA +  GLT     L   
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGAD------VNAKDEYGLTP----LYLA 54

Query: 235 SEAGDREIEEIFWSAGA 251
           +  G  EI E+    GA
Sbjct: 55  TAHGHLEIVEVLLKNGA 71

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFD 100
           PLH+A+  GH++  + +++   D     ++ G +   ++  NG  D+   L K +
Sbjct: 83  PLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.9 bits (232), Expect = 7e-23
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--PERK-----TPLHFAAIKGRV 124
            +     + +  A+A GQ++ VR L++         G  P         P+      G  
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLE--------AGADPNALNRFGRRPIQVMM-MGSA 57

Query: 125 DVVSEMLSAYGECAEDVSVQ---RETV-LHLAVKNNQFEVVRALVDWIRDVKKENILNMK 180
            V  E+L  +G  A + +       T  +H A +    + +  L           + ++ 
Sbjct: 58  QVA-ELLLLHG--A-EPNCADPATLTRPVHDAAREGFLDTLVVLHR-----AGARL-DVC 107

Query: 181 DKQGNTALHLATWKRECQVVELLLSHGAN 209
           D  G   + LA  +    +   L +   +
Sbjct: 108 DAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 85.2 bits (212), Expect = 3e-20
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 19/140 (13%)

Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
             L  AA +G+V+ V   L   G     ++      + + +  +  +V   L+    +  
Sbjct: 14  AGLATAAARGQVETV-RQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEP- 70

Query: 173 KENILNMKDKQGNT-ALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL 231
                N  D    T  +H A  +     + +L   GA       ++  +  G   +D+  
Sbjct: 71  -----NCADPATLTRPVHDAAREGFLDTLVVLHRAGAR------LDVCDAWGRLPVDL-- 117

Query: 232 SFPSEAGDREIEEIFWSAGA 251
               E G R+I     +A  
Sbjct: 118 --AEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.5 bits (140), Expect = 2e-10
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
           +M     +  L  A  + + + V  LL  GA+       NA N  G   +
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPI 49

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 50.1 bits (121), Expect = 7e-08
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGL 96
           P+H A+  G +D +  + R         +  G  P+ +A   G  D+ R L
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYL 130

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 91.7 bits (228), Expect = 8e-22
 Identities = 24/193 (12%), Positives = 60/193 (31%), Gaps = 31/193 (16%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQD--GFSPMHMASANGQIDVVRGLMKFDQKL 103
            +  A+  G  +   E+     +  + V +    +  +   +   +  +   L      +
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL------I 62

Query: 104 CH-----LQGPERKTPLHFAAIKGRVDVVS-----EMLSAYGECAEDVSVQ---RETVLH 150
                   +  E  T        G  D+       ++    G  A D++      + V+ 
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG--A-DITALYKPYKIVVF 119

Query: 151 LAVKNNQFEVVRALVDWIRDVKKENI-LNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
             + N   +    +  +     +  + L +KDK G TAL      ++   ++++  +   
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179

Query: 210 ASGGLEVNATNHS 222
                  N   +S
Sbjct: 180 ------YNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 26/194 (13%), Positives = 55/194 (28%), Gaps = 36/194 (18%)

Query: 75  QDGFSPMHMASANGQIDVVRGLMKF--DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS 132
              +  +  A+  G  +    L +   + K   L+       L     + R  +    L 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKIS-MFLI 62

Query: 133 AYGECAEDVSVQ---RETVLHLAVKNNQ------FEVVRALVDWIRDVKKENILNMKDKQ 183
             G  A D+  +     T+     +          E+ +  ++     K  +I     K 
Sbjct: 63  NKG--A-DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE-----KGADI-TALYKP 113

Query: 184 GNTALHLATWK------RECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
               +    +           + +L+ S       GL++   +  GLTAL+    F    
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQ-----SGLQLLIKDKWGLTALE----FVKRC 164

Query: 238 GDREIEEIFWSAGA 251
                 ++      
Sbjct: 165 QKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 11/103 (10%), Positives = 23/103 (22%), Gaps = 14/103 (13%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKP------DFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
                    G  D        K       D    + +     +     N  +D    +  
Sbjct: 77  TLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPL 135

Query: 99  FDQKLCH------LQGPERKTPLHFAAIKGRVDVVSEMLSAYG 135
           +            ++     T L F     +   + +M+  Y 
Sbjct: 136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL-KMMEDYI 177

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 20/129 (15%)

Query: 118 AAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENIL 177
            +           L   G  +  +       L  A +  Q + VR L+    DV      
Sbjct: 1   GSSHHHHHHS-SGLVPRG--S-HMGSDLGKKLLEAARAGQDDEVRILMANGADV------ 50

Query: 178 NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEA 237
             KDK G+T LHLA      +VV+LLL  GA+      V A +  G TA D       + 
Sbjct: 51  AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD------VXAQDKFGKTAFD----ISIDN 100

Query: 238 GDREIEEIF 246
           G+ ++ EI 
Sbjct: 101 GNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.6 bits (166), Expect = 4e-14
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 26/125 (20%)

Query: 50  ASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG- 108
            S++ H      ++         +  D    +  A+  GQ D VR LM          G 
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMA--------NGA 48

Query: 109 -PERK-----TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE---TVLHLAVKNNQFE 159
               K     TPLH AA  G ++VV ++L   G  A DV  Q +   T   +++ N   +
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVV-KLLLEAG--A-DVXAQDKFGKTAFDISIDNGNED 104

Query: 160 VVRAL 164
           +   L
Sbjct: 105 LAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
            L  A+  G  D V+ ++    D     +++G +P+H+A+ NG ++VV+ L++       
Sbjct: 27  KLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLE------A 79

Query: 106 -----LQGPERKTPLHFAAIKGRVDVVS 128
                 Q    KT    +   G  D+  
Sbjct: 80  GADVXAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.7 bits (104), Expect = 7e-06
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGL 96
           PLH+A+  GH++ VK ++    D   + ++ G +   ++  NG  D+   L
Sbjct: 60  PLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.5 bits (187), Expect = 4e-17
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 16/105 (15%)

Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LHLA +N   EVV+ L++        ++ N KDK G T LHLA      +VV+LLL  
Sbjct: 4   TPLHLAARNGHLEVVKLLLE-----AGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           GA+      VNA + +G T     L   +  G  E+ ++   AGA
Sbjct: 58  GAD------VNAKDKNGRTP----LHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.9 bits (170), Expect = 7e-15
 Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 55/140 (39%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--PERK-----TPLHFAAIKGRVDVVS 128
           +G +P+H+A+ NG ++VV+ L++         G     K     TPLH AA  G ++VV 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLE--------AGADVNAKDKNGRTPLHLAARNGHLEVV- 51

Query: 129 EMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTAL 188
           ++L   G  A DV                                    N KDK G T L
Sbjct: 52  KLLLEAG--A-DV------------------------------------NAKDKNGRTPL 72

Query: 189 HLATWKRECQVVELLLSHGA 208
           HLA      +VV+LLL  GA
Sbjct: 73  HLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 9e-14
 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 17/97 (17%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH+A+  GH++ VK ++    D     +++G +P+H+A+ NG ++VV+ L++       
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE------- 56

Query: 106 LQG--PERK-----TPLHFAAIKGRVDVVSEMLSAYG 135
             G     K     TPLH AA  G ++VV ++L   G
Sbjct: 57  -AGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.0 bits (121), Expect = 4e-08
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 184 GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIE 243
           G T LHLA      +VV+LLL  GA+      VNA + +G T     L   +  G  E+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTP----LHLAARNGHLEVV 51

Query: 244 EIFWSAGA 251
           ++   AGA
Sbjct: 52  KLLLEAGA 59

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.9 bits (142), Expect = 6e-10
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 146 ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS 205
           ET LHLAV++        +VD++  V+    L+ +  +G+TALH        + ++LLL 
Sbjct: 170 ETALHLAVRSVD-RTSLHIVDFL--VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 206 HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSA 249
             A+      +   N SG T LD+             EE+   A
Sbjct: 227 GKAS------IEIANESGETPLDIA----KRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 113 TPLHFAAIKGRVDVVS--EMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRD 170
           T LH A        +   + L       +  + +  T LH     +  E ++ L+     
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL----- 225

Query: 171 VKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
            + +  + + ++ G T L +A   +     ELL    + 
Sbjct: 226 -RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 46  PLHVASAYGHVDFVK--EIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQ 101
            LH+A        +   + +        +    G + +H        + ++ L++     
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 102 KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA 133
           ++ +  G   +TPL  A           +  A
Sbjct: 232 EIANESG---ETPLDIAKRLKHEHCEELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 59.2 bits (143), Expect = 7e-10
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 22/125 (17%)

Query: 138 AEDVSVQRETVLHLAV---KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK 194
             D     E VLHLAV         +V  ++     +      + K   GNTALH A   
Sbjct: 183 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------DAKAADGNTALHYAALY 236

Query: 195 RECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM 254
            +   ++LLL   A       V   N +G TALD+      +   +E EE+   A   + 
Sbjct: 237 NQPDCLKLLLKGRAL------VGTVNEAGETALDIAR----KKHHKECEELLEQA---QA 283

Query: 255 RDLTL 259
                
Sbjct: 284 GTFAF 288

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 13/106 (12%)

Query: 150 HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKREC---QVVELLLSH 206
             A+ N     V       +D  +              LHLA          +V+ ++ +
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 207 GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
           G +      ++A    G TAL       +     +  ++     A+
Sbjct: 216 GGH------LDAKAADGNTALHY----AALYNQPDCLKLLLKGRAL 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 54/377 (14%), Positives = 111/377 (29%), Gaps = 123/377 (32%)

Query: 10  RRLIAAALTGDVQTLQQLFVENPL------------------ILHTPAFASAGNPLH--- 48
            RL    L+   + +Q+ FVE  L                   + T  +    + L+   
Sbjct: 65  LRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 49  -VASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH-MASANGQ----IDVVR-------- 94
            V + Y +V  ++  ++L+     E+       +  +  + G+    +DV          
Sbjct: 124 QVFAKY-NVSRLQPYLKLR-QALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKM 180

Query: 95  ----------------GLMKFDQKLCHLQGPERKT-PLHFAAIKGRVDVVSEMLSAYGEC 137
                            +++  QKL +   P   +   H + IK R+  +   L      
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--- 237

Query: 138 AEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKREC 197
                          +K+  +E    L+  + +V+     N  +               C
Sbjct: 238 ---------------LKSKPYE--NCLLV-LLNVQNAKAWNAFNLS-------------C 266

Query: 198 QVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDL 257
           ++  LL +     +  L    T H  ++     ++        E++ +       R +DL
Sbjct: 267 KI--LLTTRFKQVTDFLSAATTTH--ISLDHHSMTL----TPDEVKSLLLKYLDCRPQDL 318

Query: 258 -----TLSP---------IRSPEPHGQT-------SVDNCISTEANLRQPNDLMEYFK-- 294
                T +P         IR                +   I +  N+ +P +  + F   
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 295 --FKKGRDSPGETLSAL 309
             F      P   LS +
Sbjct: 379 SVFPPSAHIPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 66/437 (15%), Positives = 122/437 (27%), Gaps = 143/437 (32%)

Query: 55  HVDF--------VKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH- 105
           H+DF         K+I+     F      + F    +       D+ + ++   +++ H 
Sbjct: 6   HMDFETGEHQYQYKDIL---SVFEDAFVDN-FDCKDVQ------DMPKSILS-KEEIDHI 54

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR--ETVLHLAVKNNQFEVVRA 163
           +   +  +             +   L +  E      VQ+  E VL     N +F     
Sbjct: 55  IMSKDAVS---------GTLRLFWTLLSKQEEM----VQKFVEEVLR---INYKF----- 93

Query: 164 LVDWIRDVKKENILNMK------DKQGNTA--------------LHLATWKRECQVVELL 203
           L+  I+  +++  +  +      D+  N                L L     E +  + +
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 204 LSHGANASGGLEVNATNHSGLT--ALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSP 261
           L  G     G        SG T  ALDV LS+  +   +   +IFW         L L  
Sbjct: 154 LIDGV---LG--------SGKTWVALDVCLSYKVQ--CKMDFKIFW---------LNLK- 190

Query: 262 IRSPEPHGQTSVDNCISTEANLRQPNDLMEYFKFKKGRDSPGETLSALLVVAVLVATTTF 321
                        NC S E  L     L   ++      S  +  S + +    +     
Sbjct: 191 -------------NCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 322 QFGVNPPG--------GVWQEYYKPDRKNGTTSGKAYSAGQSILGSTDPVGFGIFIFFNS 373
           +   + P          V       + K    +  A++    IL +T       F+   +
Sbjct: 236 RLLKSKPYENCLLVLLNVQ------NAK----AWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 374 VGFSLSIEMIRILTTNFPLQLELQLCFFAMYVTYTNAVITIAPDGMSLFVTL---TVAIM 430
                       LT +    L         Y+                   L    +   
Sbjct: 286 TTHISLDHHSMTLTPDEVKSL------LLKYL------------DCRPQ-DLPREVLTTN 326

Query: 431 PAVIALAAYLLRQHRKR 447
           P  +++ A  +R     
Sbjct: 327 PRRLSIIAESIRDGLAT 343

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 13/111 (11%)

Query: 139 EDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQ 198
            D     E VLHLAVK      +  LVD+I  ++    L+ K   GNTALH A    +  
Sbjct: 165 PDAQAPEELVLHLAVKVANQASL-PLVDFI--IQNGGHLDAKAADGNTALHYAALYNQPD 221

Query: 199 VVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSA 249
            ++LLL   A       V   N +G TALD+      +   +E EE+   A
Sbjct: 222 CLKLLLKGRAL------VGTVNEAGETALDIA----RKKHHKECEELLEQA 262

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 144 QRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
              T L  A   N       L+    +V      N  D  G   LH AT      +  L 
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANV------NQADSAGRGPLHHATILGHTGLACLF 287

Query: 204 LSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           L  GA+      + A +  G   L +      E  + +I  + 
Sbjct: 288 LKRGAD------LGARDSEGRDPLTIA----METANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 29/133 (21%), Positives = 40/133 (30%), Gaps = 12/133 (9%)

Query: 108 GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW 167
           G +  TPL  A     +    E L   G             LH A       +       
Sbjct: 232 GQDNATPLIQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLF--- 287

Query: 168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG-LTA 226
              +K+   L  +D +G   L +A       +V LL      A       A   +G  T 
Sbjct: 288 ---LKRGADLGARDSEGRDPLTIAMETANADIVTLLRL----AKMREAEAAQGQAGDETY 340

Query: 227 LDVLLSFPSEAGD 239
           LD+   F   A D
Sbjct: 341 LDIFRDFSLMASD 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	455
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-39  Score=302.41  Aligned_cols=230  Identities=18%  Similarity=0.223  Sum_probs=180.4

Q ss_pred             cccCcccCHHHHHHHHcC-------------CHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCc
Q 012836            2 TSYSTRMDRRLIAAALTG-------------DVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPD   68 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~   68 (455)
                      +..|..|.||||.|+..|             +.++++.|++.++......+ ..|.||||+|+..|+.+++++|++.+.+
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD-RTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             ------------------------------------------------CCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            457889999999999987             99999999999887655433 3599999999999999999999999988


Q ss_pred             chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcH
Q 012836           69 FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETV  148 (455)
Q Consensus        69 ~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  148 (455)
                       .+..|..|+||||+|+..|+.+++++|++.++...+.++.+|.||||+|+..|+.+++++|++. +.+++..|..|+||
T Consensus        83 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~  160 (253)
T 1yyh_A           83 -ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSA  160 (253)
T ss_dssp             -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBH
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence             5777999999999999999999999999999855588999999999999999999999999997 88999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHH
Q 012836          149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD  228 (455)
Q Consensus       149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~  228 (455)
                      ||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|+||+|
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~tpl~  228 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGANK------DMQNNREETPLFLAAREGSYETAKVLLDHFA------NRDITDHMDRLPRD  228 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC------CccccccCCCCHHH
Confidence            99999999999999999999887      8999999999999999999999999999999      89999999999999


Q ss_pred             HHhhCCCCcCchhHHHHHHHhc
Q 012836          229 VLLSFPSEAGDREIEEIFWSAG  250 (455)
Q Consensus       229 ~a~~~~~~~~~~~i~~~L~~~g  250 (455)
                      +|..    .++.+|+++|.+..
T Consensus       229 ~A~~----~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          229 IAQE----RMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHHH----TTCHHHHHHHHC--
T ss_pred             HHHH----cCCHHHHHHHHHHh
Confidence            9974    58999999998643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.2e-39  Score=294.30  Aligned_cols=226  Identities=22%  Similarity=0.358  Sum_probs=209.2

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS   85 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa   85 (455)
                      ..++++||.|+..|+.+.++.++++++......+ ..|.||||+|+..|+.+++++|++.+.+ .+..|..|+||||+|+
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   81 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAA   81 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCC-CCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHH
Confidence            3467999999999999999999999877654443 4599999999999999999999999887 5777999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 012836           86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV  165 (455)
Q Consensus        86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  165 (455)
                      ..|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  159 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILL  159 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999998 78899999999999999999999999997 8889999999999999999999999999999


Q ss_pred             HHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHH
Q 012836          166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEI  245 (455)
Q Consensus       166 ~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~  245 (455)
                      ++|+++      +.+|..|+||||+|+..++.+++++|+++|+      +++.+|..|.||+++|.    ..++.+++++
T Consensus       160 ~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~----~~~~~~i~~l  223 (231)
T 3aji_A          160 FYKAST------NIQDTEGNTPLHLACDEERVEEAKFLVTQGA------SIYIENKEEKTPLQVAK----GGLGLILKRL  223 (231)
T ss_dssp             HTTCCS------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHSC----HHHHHHHHHH
T ss_pred             hcCCCc------cccCCCCCCHHHHHHHCCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHH----hhHHHHHHHH
Confidence            998887      8899999999999999999999999999999      88999999999999994    4578899999


Q ss_pred             HHHhcc
Q 012836          246 FWSAGA  251 (455)
Q Consensus       246 L~~~ga  251 (455)
                      |.++|+
T Consensus       224 L~~~~a  229 (231)
T 3aji_A          224 AEGEEA  229 (231)
T ss_dssp             HHHHHH
T ss_pred             Hccccc
Confidence            999887

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.1e-38  Score=293.72  Aligned_cols=229  Identities=21%  Similarity=0.207  Sum_probs=199.5

Q ss_pred             cccCcccCHHHHHHHHcCCHHHHHHHHh----cCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCC
Q 012836            2 TSYSTRMDRRLIAAALTGDVQTLQQLFV----ENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDG   77 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   77 (455)
                      +..|+.|+|+||.|+..|+.+.++.|++    .+.... .. +..|.||||+|+..|+.+++++|++.+.+ .+..|..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g   79 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IY-NNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHG   79 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cc-cccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCC
Confidence            5678999999999999999999999997    333332 22 33599999999999999999999999987 56779999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCc----cccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc-cCCCcHHHHH
Q 012836           78 FSPMHMASANGQIDVVRGLMKFDQ----KLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS-VQRETVLHLA  152 (455)
Q Consensus        78 ~tpLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A  152 (455)
                      .||||+|+..|+.+++++|++.++    +. +..|..|.||||+|+..|+.+++++|++. +.+++..+ ..|+||||+|
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHA  157 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHH
Confidence            999999999999999999999987    44 77889999999999999999999999998 78888888 7899999999


Q ss_pred             HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836          153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS  232 (455)
Q Consensus       153 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~  232 (455)
                      +..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.||+|+|. 
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~-  224 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGANV------NAQMYSGSSALHSASGRGLLPLVRTLVRSGA------DSSLKNCHNDTPLMVAR-  224 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCCT------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCTTTTCS-
T ss_pred             HHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC------CCCCcCCCCCCHHHHHH-
Confidence            9999999999999999887      8999999999999999999999999999999      89999999999999994 


Q ss_pred             CCCCcCchhHHHHHHHhcc
Q 012836          233 FPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       233 ~~~~~~~~~i~~~L~~~ga  251 (455)
                         ..+..++++.|.+.++
T Consensus       225 ---~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          225 ---SRRVIDILRGKATRPA  240 (241)
T ss_dssp             ---SHHHHHHHTC------
T ss_pred             ---hcCcHHHHhhhccCCC
Confidence               5578888888877654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.4e-38  Score=289.12  Aligned_cols=219  Identities=22%  Similarity=0.314  Sum_probs=198.4

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC--CcchhhhcCCCCcHHHHHH
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLK--PDFAKEVNQDGFSPMHMAS   85 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpLh~Aa   85 (455)
                      |+||||.|++.|+.+.++.|+++++......+ ..|.||||+|+..|+.+++++|++.+  .+.....+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            68999999999999999999999887665443 45999999999999999999999998  5543437889999999999


Q ss_pred             HcCCHHHHHHHHhcC--ccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836           86 ANGQIDVVRGLMKFD--QKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA  163 (455)
Q Consensus        86 ~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~  163 (455)
                      ..|+.+++++|++.+  .+. +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999998  666 77899999999999999999999999998 89999999999999999999999999999


Q ss_pred             HHHHh-hhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH-hcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchh
Q 012836          164 LVDWI-RDVKKENILNMKDKQGNTALHLATWKRECQVVELLL-SHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDRE  241 (455)
Q Consensus       164 Ll~~g-~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll-~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~  241 (455)
                      |++.| .++      +.+|..|+||||+|+..|+.+++++|+ +.|+      +++.+|.+|.||+|+|.       ..+
T Consensus       159 Ll~~g~~~~------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga------~~~~~~~~g~t~l~~A~-------~~~  219 (228)
T 2dzn_A          159 LCGLGKSAV------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA------EYDLVDNKGAKAEDVAL-------NEQ  219 (228)
T ss_dssp             HHTTTCCCS------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC------CSCCBCTTSCBGGGGCS-------STT
T ss_pred             HHhcCcccc------cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCccCCCCCcHHHHHH-------HHH
Confidence            99988 665      889999999999999999999999999 8898      89999999999999994       346


Q ss_pred             HHHHHHH
Q 012836          242 IEEIFWS  248 (455)
Q Consensus       242 i~~~L~~  248 (455)
                      +.++|++
T Consensus       220 ~~~~l~~  226 (228)
T 2dzn_A          220 VKKFFLN  226 (228)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            7777765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.3e-38  Score=288.21  Aligned_cols=215  Identities=24%  Similarity=0.267  Sum_probs=198.4

Q ss_pred             cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836            2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM   81 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   81 (455)
                      ...+..|.|+||.|+..|+.++++.|++.+.+....  +..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L   81 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCL   81 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHH
Confidence            456788999999999999999999999998765443  23599999999999999999999999887 567789999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHH
Q 012836           82 HMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV  161 (455)
Q Consensus        82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  161 (455)
                      |+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999998544488899999999999999999999999997 888999999999999999999999999


Q ss_pred             HHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836          162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS  232 (455)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~  232 (455)
                      ++|+++|+++      +.+|..|+||||+|+..++.+++++|+++|+      +++.+|..|+||||+|..
T Consensus       161 ~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          161 EILLAAKCDL------HAVNIHGDSPLHIAARENRYDCVVLFLSRDS------DVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             HHHHTTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC------CTTCCCTTSCCHHHHSCT
T ss_pred             HHHHHcCCCC------CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC------CCCccCCCCCCHHHHHHH
Confidence            9999999887      8899999999999999999999999999999      899999999999999964

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.9e-38  Score=297.84  Aligned_cols=218  Identities=20%  Similarity=0.156  Sum_probs=185.5

Q ss_pred             CcccCcccCHHHHHHHHcCCHHHHHHHHhcCCccc-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCc
Q 012836            1 MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLIL-HTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFS   79 (455)
Q Consensus         1 ~t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   79 (455)
                      +...+..|.||||.|+..|+.++++.|++.+.... ....+..|.||||+|+..|+.+++++|++++.+ ++..|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            35678999999999999999999999999876521 122234599999999999999999999999988 5777999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCccc----------------------------------------------cccCCCCCCC
Q 012836           80 PMHMASANGQIDVVRGLMKFDQKL----------------------------------------------CHLQGPERKT  113 (455)
Q Consensus        80 pLh~Aa~~g~~~iv~~Ll~~~~~~----------------------------------------------~~~~d~~g~t  113 (455)
                      |||+|+..|+.+++++|++.+++.                                              .+.+|..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            999999999999999999977541                                              2567889999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhcCccccccccC-CCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHH
Q 012836          114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ-RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT  192 (455)
Q Consensus       114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~  192 (455)
                      |||+|+..|+.+++++|++. +.+++..+.. |+||||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~------~~~d~~g~tpL~~A~  233 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP------TARMYGGRTPLGSAL  233 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC------cccccCCCCHHHHHH
Confidence            99999999999999999997 8888888754 999999999999999999999999987      899999999999999


Q ss_pred             hcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836          193 WKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS  232 (455)
Q Consensus       193 ~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~  232 (455)
                      ..|+.+++++|+++|+      +++.+|..|.||+++|..
T Consensus       234 ~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          234 LRPNPILARLLRAHGA------PEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             TSSCHHHHHHHHHTTC------CCCCCC------------
T ss_pred             HcCCcHHHHHHHHcCC------CcCcCCCcccccccccCC
Confidence            9999999999999999      899999999999999954

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.9e-38  Score=295.92  Aligned_cols=224  Identities=24%  Similarity=0.333  Sum_probs=202.7

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      ..+..|.|+||.|+..|+.++++.|++.+.+....  +..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~  130 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLF  130 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHH
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence            46778999999999999999999999988765433  33599999999999999999999999887 5777999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHH
Q 012836           83 MASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR  162 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~  162 (455)
                      +|+..|+.+++++|++.+++. +. +.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.++++
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~  207 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASV-QP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVK  207 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999999999999887 33 45699999999999999999999997 8899999999999999999999999999


Q ss_pred             HHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhH
Q 012836          163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREI  242 (455)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i  242 (455)
                      +|++.|+++      + .|..|+||||+|+..++.+++++|+++|+      +++.+|.+|+||||+|.      .+.++
T Consensus       208 ~Ll~~ga~~------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~t~l~~A~------~~~~~  268 (285)
T 3d9h_A          208 KLLESGADV------N-QGKGQDSPLHAVVRTASEELACLLMDFGA------DTQAKNAEGKRPVELVP------PESPL  268 (285)
T ss_dssp             HHHHTTCCT------T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCGGGGSC------TTSHH
T ss_pred             HHHHCCCCC------C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHhc------CccHH
Confidence            999999887      5 48999999999999999999999999999      89999999999999996      34689


Q ss_pred             HHHHHHh-cc
Q 012836          243 EEIFWSA-GA  251 (455)
Q Consensus       243 ~~~L~~~-ga  251 (455)
                      +++|+++ |+
T Consensus       269 ~~~Ll~~~~a  278 (285)
T 3d9h_A          269 AQLFLEREGA  278 (285)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHhhcc
Confidence            9999998 55

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-37  Score=290.31  Aligned_cols=230  Identities=23%  Similarity=0.271  Sum_probs=190.6

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA   84 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   84 (455)
                      +..+.|+||.|+..|+.++++.|++.+.+....  +..|.||||+|+..|+.+++++|++++.+ .+..|..|.||||+|
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A  112 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEA  112 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHH
Confidence            456678888888888888888888776654432  23478888888888888888888888776 466677888888888


Q ss_pred             HHcCCHHHHHHHHhcCccccccC----------CCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           85 SANGQIDVVRGLMKFDQKLCHLQ----------GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        85 a~~g~~~iv~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      +..|+.+++++|++.+.+. +..          +..|.||||.|+..|+.+++++|++..+.+++..|..|+||||+|+.
T Consensus       113 ~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  191 (285)
T 1wdy_A          113 AVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL  191 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            8888888888888887776 333          67788888888888888888888887788888888888999999998


Q ss_pred             cCC----HHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHh-cCCCCCCCccccccCCCCCCHHHH
Q 012836          155 NNQ----FEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS-HGANASGGLEVNATNHSGLTALDV  229 (455)
Q Consensus       155 ~~~----~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~ga~~~~~v~~~~~n~~g~t~l~~  229 (455)
                      .++    .+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|++ .|+      +++.+|..|+||||+
T Consensus       192 ~~~~~~~~~i~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~------~~~~~~~~g~t~l~~  259 (285)
T 1wdy_A          192 SSDDSDVEAITHLLLDHGADV------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHI------EINDTDSDGKTALLL  259 (285)
T ss_dssp             CSCTTTHHHHHHHHHHTTCCS------SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC------CTTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHHHHcCCCC------CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC------CccccCCCCCcHHHH
Confidence            888    88888888888776      8899999999999999999999999999 777      889999999999999


Q ss_pred             HhhCCCCcCchhHHHHHHHhccccc
Q 012836          230 LLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       230 a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      |+..    ++.+++++|+++|+...
T Consensus       260 A~~~----~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          260 AVEL----KLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHT----TCHHHHHHHHHHSSCSC
T ss_pred             HHHc----CcHHHHHHHHHcCCCCC
Confidence            9754    78899999999999653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1e-37  Score=305.83  Aligned_cols=234  Identities=18%  Similarity=0.191  Sum_probs=208.6

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      ..+..|.|+||.|+..|+.++++.|++.+.+....  +..|.||||+|+..|+.+++++|++.+.+.   .+.+|.||||
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~   89 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIH   89 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHH
Confidence            45778999999999999999999999998765433  335999999999999999999999999853   2458999999


Q ss_pred             HHHHcCCHHHHHHHHhc----Ccccccc-----------------CCCCCCCHHHHHHHhC--CHHHHHHHHHhcCcccc
Q 012836           83 MASANGQIDVVRGLMKF----DQKLCHL-----------------QGPERKTPLHFAAIKG--RVDVVSEMLSAYGECAE  139 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~----~~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~  139 (455)
                      +|+..|+.+++++|++.    +.+. +.                 +|.+|.||||+|+..|  +.+++++|++. +.+++
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~  167 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPT  167 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTT
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCc
Confidence            99999999999999998    5554 33                 7788999999999999  99999999998 89999


Q ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCcccccc
Q 012836          140 DVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNAT  219 (455)
Q Consensus       140 ~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~  219 (455)
                      ..|..|+||||+|+..|+.+++++|+++|++. ....++.+|..|+||||+|+..|+.+++++|+++|+      +++.+
T Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------d~~~~  240 (364)
T 3ljn_A          168 AKDKADETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI------DVNME  240 (364)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC------CTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CCCCC
Confidence            99999999999999999999999999998872 122248999999999999999999999999999999      89999


Q ss_pred             CCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          220 NHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       220 n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      |..|.||||+|+..    ++.+++++|+++|+...
T Consensus       241 d~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          241 DNEHTVPLYLSVRA----AMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             CTTSCCHHHHHHHT----CCHHHHHHHHHHSCHHH
T ss_pred             CCCCCCHHHHHHHh----ChHHHHHHHHHcCCchh
Confidence            99999999999754    88999999999998653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=295.38  Aligned_cols=214  Identities=27%  Similarity=0.341  Sum_probs=171.4

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCC------CCCCCCChHHHHHHHcCCH-HHHHHHHHcCCcchhhhcC
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHT------PAFASAGNPLHVASAYGHV-DFVKEIIRLKPDFAKEVNQ   75 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~   75 (455)
                      ..|.++.++|+.||..|+.++|+.|++.+......      ..+..+.||||.|+..++. .+++.|++.+.+ ++..|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCC
Confidence            45667779999999999999999999987653221      1223488999999998876 488999999988 578899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836           76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN  155 (455)
Q Consensus        76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  155 (455)
                      +|+||||+|+..|+.+++++|++.+++. +.++.+|.||+|.|+..++.++++.|++. +.+++..|..|+||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHC
Confidence            9999999999999999999999999998 88899999999999999999999999997 899999999999999999999


Q ss_pred             CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      |+.+++++|+++|+++      |.+|..|+||||+|+..|+.+++++|+++|+      +++.+|.+|+||||+|.
T Consensus       163 g~~~~v~~Ll~~gadv------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga------d~~~~d~~G~TpL~~A~  226 (269)
T 4b93_B          163 GHHELVALLLQHGASI------NASNNKGNTALHEAVIEKHVFVVELLLLHGA------SVQVLNKRQRTAVDCAE  226 (269)
T ss_dssp             TCGGGHHHHHHTTCCT------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCSGGGSC
T ss_pred             CCHHHHHHHHHCCCCC------CccccCCCcHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHH
Confidence            9999999999999987      8999999999999999999999999999999      89999999999999995

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.2e-37  Score=289.26  Aligned_cols=244  Identities=22%  Similarity=0.271  Sum_probs=188.5

Q ss_pred             cCcccCHHHHHHHHcCCHHHHHHHHhcCCcc---------cCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhc
Q 012836            4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLI---------LHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVN   74 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~---------~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   74 (455)
                      +...+.|+||.|++.|+.+.+..++..++..         .....+..|.||||+|+..|+.+++++|++.+.+ ++..|
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~   89 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIIT   89 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEEC
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcC
Confidence            4567899999999999998888877654331         0112234599999999999999999999999887 57789


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      ..|.||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++. +.+++.. .+|.||||+|+.
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~  166 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPE-SDLASPIHEAAR  166 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCS-CTTSCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCC-CCCCCHHHHHHH
Confidence            99999999999999999999999999988 88999999999999999999999999997 6666643 459999999999


Q ss_pred             cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCC
Q 012836          155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP  234 (455)
Q Consensus       155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~  234 (455)
                      .|+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|++.|+      +++. |..|.||||+|+.  
T Consensus       167 ~g~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~-~~~g~t~L~~A~~--  231 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGNI------DHKISHLGTPLYLACENQQRACVKKLLESGA------DVNQ-GKGQDSPLHAVVR--  231 (285)
T ss_dssp             HTCHHHHHHHHHTTCCT------TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC------CTTC-CBTTBCHHHHHHH--
T ss_pred             cCCHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC------CCCC-CCCCCCHHHHHHH--
Confidence            99999999999999887      8999999999999999999999999999998      6664 8899999999975  


Q ss_pred             CCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          235 SEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       235 ~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                        .++.+++++|+++|+..         +.++..|.+|++...
T Consensus       232 --~~~~~~v~~Ll~~gad~---------~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          232 --TASEELACLLMDFGADT---------QAKNAEGKRPVELVP  263 (285)
T ss_dssp             --TTCHHHHHHHHHTTCCT---------TCCCTTSCCGGGGSC
T ss_pred             --cCCHHHHHHHHHCCCCC---------CCcCCCCCCHHHHhc
Confidence              47889999999999853         456677888877665

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.9e-37  Score=281.14  Aligned_cols=234  Identities=24%  Similarity=0.263  Sum_probs=211.0

Q ss_pred             CcccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcH
Q 012836            1 MTSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSP   80 (455)
Q Consensus         1 ~t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp   80 (455)
                      |+..++.+.++|+.|+..|+.+.++.|++.+.+....  +..|.||||+|+..|+.+++++|++.+++.....+..|.||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence            5677889999999999999999999999988765433  23599999999999999999999999988766667779999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCC-HH
Q 012836           81 MHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ-FE  159 (455)
Q Consensus        81 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~  159 (455)
                      ||+|+..|+.+++++|++.+.+. +.++..|.||||.|+..|+.+++++|++. +.+++..+..|.||||+|+..++ .+
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHH
Confidence            99999999999999999999988 77899999999999999999999999997 88899999999999999997766 89


Q ss_pred             HHHHHHHHhhhhcccccccccCC-CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcC
Q 012836          160 VVRALVDWIRDVKKENILNMKDK-QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG  238 (455)
Q Consensus       160 ~v~~Ll~~g~~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~  238 (455)
                      ++++|++.|.++      +..+. .|+||||+|+..|+.+++++|+++|+      +++.+|..|.||+++|..    .+
T Consensus       158 ~~~~L~~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~----~~  221 (240)
T 3eu9_A          158 PTRLLLTFNVSV------NLGDKYHKNTALHWAVLAGNTTVISLLLEAGA------NVDAQNIKGESALDLAKQ----RK  221 (240)
T ss_dssp             THHHHHHTTCCT------TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC------CTTCBCTTSCBHHHHHHH----TT
T ss_pred             HHHHHHhcCCCc------chhhccCCCcHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH----cC
Confidence            999999998887      77776 99999999999999999999999998      899999999999999975    48


Q ss_pred             chhHHHHHHHhccccc
Q 012836          239 DREIEEIFWSAGAMRM  254 (455)
Q Consensus       239 ~~~i~~~L~~~ga~~~  254 (455)
                      +.+++++|+++++...
T Consensus       222 ~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          222 NVWMINHLQEARQAKG  237 (240)
T ss_dssp             CHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHhhhccC
Confidence            8999999999998653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9e-37  Score=296.60  Aligned_cols=243  Identities=30%  Similarity=0.350  Sum_probs=211.9

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA   84 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   84 (455)
                      ++.+.++||.|++.|+.+.++.++.+.+...... +..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHH
Confidence            3457899999999999999999998754443333 34599999999999999999999999988 577899999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccc-----------------------
Q 012836           85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV-----------------------  141 (455)
Q Consensus        85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------------  141 (455)
                      +..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++ +.+++..                       
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence            9999999999999999998 78899999999999999999999999997 6655543                       


Q ss_pred             -------------------------------ccCCCcHHHHHHHc---CCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836          142 -------------------------------SVQRETVLHLAVKN---NQFEVVRALVDWIRDVKKENILNMKDKQGNTA  187 (455)
Q Consensus       142 -------------------------------~~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~  187 (455)
                                                     +..|+||||+|+..   ++.+++++|++.|.++      +.+|.+|+||
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~  250 (351)
T 3utm_A          177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV------NEKNKDFMTP  250 (351)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT------TCCCTTCCCH
T ss_pred             hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc------CCcCCCCCCH
Confidence                                           35678999999999   5589999999999887      8999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCC
Q 012836          188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEP  267 (455)
Q Consensus       188 Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  267 (455)
                      ||+|+..|+.+++++|+++|+      +++.+|..|+||||+|+.    .++.+++++|+++|+..         +.++.
T Consensus       251 L~~A~~~g~~~~v~~Ll~~ga------~~n~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~---------~~~~~  311 (351)
T 3utm_A          251 LHVAAERAHNDVMEVLHKHGA------KMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDP---------SIISL  311 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCT---------TCCCT
T ss_pred             HHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCC---------CCcCC
Confidence            999999999999999999998      899999999999999974    48899999999999954         33455


Q ss_pred             CCCCccccc
Q 012836          268 HGQTSVDNC  276 (455)
Q Consensus       268 ~~~~~~~~~  276 (455)
                      .|.++.+..
T Consensus       312 ~g~tal~~a  320 (351)
T 3utm_A          312 QGFTAAQMG  320 (351)
T ss_dssp             TSCCHHHHS
T ss_pred             CCCChhhhh
Confidence            666765443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-36  Score=285.17  Aligned_cols=243  Identities=22%  Similarity=0.251  Sum_probs=215.1

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS   85 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa   85 (455)
                      .+|+++||.|++.|+.+.++.|+++++...... +..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence            467899999999999999999999988765442 34589999999999999999999999987 5677899999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccc----------ccCCCcHHHHHHHc
Q 012836           86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV----------SVQRETVLHLAVKN  155 (455)
Q Consensus        86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~----------~~~g~t~Lh~A~~~  155 (455)
                      ..|+.+++++|++++.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..          +..|.||||+|+..
T Consensus        81 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence            999999999999999988 78899999999999999999999999998 7777665          77899999999999


Q ss_pred             CCHHHHHHHHHH-hhhhcccccccccCCCCCcHHHHHHhcCC----hHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836          156 NQFEVVRALVDW-IRDVKKENILNMKDKQGNTALHLATWKRE----CQVVELLLSHGANASGGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       156 ~~~~~v~~Ll~~-g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~----~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a  230 (455)
                      |+.+++++|++. |.++      +.+|..|+||||+|+..++    .+++++|+++|+      +++.+|..|.||||+|
T Consensus       159 ~~~~~v~~Ll~~~~~~~------~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~------~~~~~~~~g~t~L~~A  226 (285)
T 1wdy_A          159 GHVEVLKILLDEMGADV------NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA------DVNVRGERGKTPLILA  226 (285)
T ss_dssp             TCHHHHHHHHHTSCCCT------TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC------CSSCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHHHhcCCCC------CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC------CCCCcCCCCCcHHHHH
Confidence            999999999987 7766      8899999999999999999    899999999998      8999999999999999


Q ss_pred             hhCCCCcCchhHHHHHHH-hcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          231 LSFPSEAGDREIEEIFWS-AGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       231 ~~~~~~~~~~~i~~~L~~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      +.    .++.+++++|++ .|+..         +.++..|.+|+....
T Consensus       227 ~~----~~~~~~v~~Ll~~~g~~~---------~~~~~~g~t~l~~A~  261 (285)
T 1wdy_A          227 VE----KKHLGLVQRLLEQEHIEI---------NDTDSDGKTALLLAV  261 (285)
T ss_dssp             HH----TTCHHHHHHHHHSSSCCT---------TCCCTTSCCHHHHHH
T ss_pred             HH----cCCHHHHHHHHhccCCCc---------cccCCCCCcHHHHHH
Confidence            75    478999999998 67643         344556777754443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.1e-36  Score=293.37  Aligned_cols=230  Identities=26%  Similarity=0.300  Sum_probs=202.1

Q ss_pred             ccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc-----------------
Q 012836            7 RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF-----------------   69 (455)
Q Consensus         7 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------   69 (455)
                      +++|+||.||+.|++++|+.||+.+.+++... ...|.||||+|+..|+.++|++|++++++.                 
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            47899999999999999999999998765443 235899999999999999999999987643                 


Q ss_pred             ---------------hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCcccc---------ccCCCCCCCHHHHHHHhCCHH
Q 012836           70 ---------------AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC---------HLQGPERKTPLHFAAIKGRVD  125 (455)
Q Consensus        70 ---------------~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~  125 (455)
                                     .+..|..|.||||+|+..|+.+++++|++.++++.         ...+..|.||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                           34567889999999999999999999999987762         234567899999999999999


Q ss_pred             HHHHHHHhcCccccccccCCCcHHHHHHHcCC----HHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          126 VVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ----FEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       126 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      ++++|+++.|.+++..|..|+|+||.++..+.    .+++++|+++|+++      |.+|.+|+||||+|+..|+.++++
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~------n~~d~~g~t~L~~a~~~~~~~~v~  256 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV------NVRGERGKTPLILAVEKKHLGLVQ  256 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT------TCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHhhhhHHHH
Confidence            99999988899999999999999998887654    46889999999887      899999999999999999999999


Q ss_pred             HHHhc-CCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836          202 LLLSH-GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       202 ~Ll~~-ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~  253 (455)
                      +|++. |+      +++.+|.+|+||||+|+..    ++.+++++|+++||..
T Consensus       257 ~Ll~~~~~------~vn~~d~~G~TpL~~A~~~----g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          257 RLLEQEHI------EINDTDSDGKTALLLAVEL----KLKKIAELLCKRGAST  299 (337)
T ss_dssp             HHHTSTTC------CTTCBCTTSCBHHHHHHHT----TCHHHHHHHHTTSCSS
T ss_pred             HHHHhcCC------cccCcCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCC
Confidence            99986 55      8999999999999999754    7899999999999854

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=9.8e-37  Score=277.59  Aligned_cols=217  Identities=18%  Similarity=0.238  Sum_probs=197.1

Q ss_pred             CCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHh
Q 012836           19 GDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK   98 (455)
Q Consensus        19 g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~   98 (455)
                      |+.++++.|+++++......+ ..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTD-RTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccC-CCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            678889999998887665433 3599999999999999999999999887 57779999999999999999999999999


Q ss_pred             cCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhccccccc
Q 012836           99 FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILN  178 (455)
Q Consensus        99 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  178 (455)
                      .++...+.++..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~  152 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK------D  152 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT------T
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------C
Confidence            99855588899999999999999999999999997 8889999999999999999999999999999999887      8


Q ss_pred             ccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          179 MKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       179 ~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      .+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.||+++|..    .++.+++++|+++|+.+.
T Consensus       153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          153 MQNNREETPLFLAAREGSYETAKVLLDHFA------NRDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSC
T ss_pred             CcCCCCcCHHHHHHHcCCHHHHHHHHHcCC------CCccccccCCCHHHHHHH----hcchHHHHHHHHcCCCcc
Confidence            899999999999999999999999999999      789999999999999974    478999999999999654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-36  Score=300.95  Aligned_cols=240  Identities=25%  Similarity=0.345  Sum_probs=168.3

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS   85 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa   85 (455)
                      ..+.|+||.|+..|+.++++.|++.+......  +..|.||||+|+..|+.+++++|++++.+ .+..+..|.||||+|+
T Consensus       144 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~  220 (437)
T 1n11_A          144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAA  220 (437)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHH
Confidence            34455555555555555555555554433222  12355666666666666666666666554 3444556666666666


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 012836           86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV  165 (455)
Q Consensus        86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  165 (455)
                      ..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++ +.+++..+..|+||||+|+..|+.+++++|+
T Consensus       221 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  298 (437)
T 1n11_A          221 KQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLI  298 (437)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            666666666666666665 56666777777777777777777777776 6667777777788888888888888888888


Q ss_pred             HHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHH
Q 012836          166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEI  245 (455)
Q Consensus       166 ~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~  245 (455)
                      ++|.++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+.    .++.+++++
T Consensus       299 ~~g~~~------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------d~n~~~~~g~t~L~~A~~----~g~~~iv~~  362 (437)
T 1n11_A          299 KHGVMV------DATTRMGYTPLHVASHYGNIKLVKFLLQHQA------DVNAKTKLGYSPLHQAAQ----QGHTDIVTL  362 (437)
T ss_dssp             HHTCCT------TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----TTCHHHHHH
T ss_pred             hCCccC------CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC------CCCCCCCCCCCHHHHHHH----CChHHHHHH
Confidence            777765      7888999999999999999999999999988      788899999999999975    478899999


Q ss_pred             HHHhcccccccCCCCCCCCCCCCCCCcccc
Q 012836          246 FWSAGAMRMRDLTLSPIRSPEPHGQTSVDN  275 (455)
Q Consensus       246 L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
                      |+++|+.+.         ..+..|.+|++.
T Consensus       363 Ll~~ga~~~---------~~~~~g~t~l~~  383 (437)
T 1n11_A          363 LLKNGASPN---------EVSSDGTTPLAI  383 (437)
T ss_dssp             HHHTTCCSC---------CCCSSSCCHHHH
T ss_pred             HHHCcCCCC---------CCCCCCCCHHHH
Confidence            999998542         344556666443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.4e-37  Score=290.43  Aligned_cols=211  Identities=25%  Similarity=0.312  Sum_probs=192.5

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA   84 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   84 (455)
                      +..+.|+||.||..|+.+.++.|++.+.+....  +..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAA  113 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence            446789999999999999999999998775443  33599999999999999999999999988 577899999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccc------------------------
Q 012836           85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAED------------------------  140 (455)
Q Consensus        85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------------------------  140 (455)
                      +..|+.+++++|+++++++ +..|.+|.||||+|+..|+.++++.++...+.+++.                        
T Consensus       114 ~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999998 788999999999999999999999998876665443                        


Q ss_pred             --cccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccc
Q 012836          141 --VSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNA  218 (455)
Q Consensus       141 --~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~  218 (455)
                        .+..|.||||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga------d~~~  260 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV------NIKDYDGWTPLHAAAHWGKEEACRILVENLC------DMEA  260 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTC
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC------CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC------CCCC
Confidence              4567999999999999999999999999887      8999999999999999999999999999999      8999


Q ss_pred             cCCCCCCHHHHHh
Q 012836          219 TNHSGLTALDVLL  231 (455)
Q Consensus       219 ~n~~g~t~l~~a~  231 (455)
                      +|..|+||||+|.
T Consensus       261 ~d~~g~t~l~~A~  273 (299)
T 1s70_B          261 VNKVGQTAFDVAD  273 (299)
T ss_dssp             CCTTSCCTTTSCC
T ss_pred             cCCCCCCHHHHHH
Confidence            9999999999994

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-36  Score=299.65  Aligned_cols=227  Identities=19%  Similarity=0.216  Sum_probs=201.1

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHH--------hcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCC
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLF--------VENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDG   77 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   77 (455)
                      ..|.|+||.|+..|+.++++.|+        +.+.+....  +..|.||||+|+..|+.+++++|++++.+ ++..|..|
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g  199 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSE  199 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCC
Confidence            67899999999999998888876        556554333  33599999999999999999999999988 56779999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcC---ccccccCCCCCCCHHHHHHHhC---CHHHHHHHHHhcCccccc--------ccc
Q 012836           78 FSPMHMASANGQIDVVRGLMKFD---QKLCHLQGPERKTPLHFAAIKG---RVDVVSEMLSAYGECAED--------VSV  143 (455)
Q Consensus        78 ~tpLh~Aa~~g~~~iv~~Ll~~~---~~~~~~~d~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~--------~~~  143 (455)
                      .||||+|+..|+.+++++|++.+   .+. +..|..|.||||+|+..|   +.+++++|++. +.+++.        .|.
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~  277 (373)
T 2fo1_E          200 RSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKY  277 (373)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccc
Confidence            99999999999999999999987   455 778999999999999998   89999999998 776664        567


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHh-hhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCC
Q 012836          144 QRETVLHLAVKNNQFEVVRALVDWI-RDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHS  222 (455)
Q Consensus       144 ~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~  222 (455)
                      .|+||||+|+..|+.+++++|++++ .++      +.+|.+|+||||+|+..|+.+++++|+++|+      +++.+|..
T Consensus       278 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga------d~~~~d~~  345 (373)
T 2fo1_E          278 KGRTALHYAAQVSNMPIVKYLVGEKGSNK------DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA------SVEAVDAT  345 (373)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCT------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CSSCCCSS
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHhcCCCc------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccCCCCC
Confidence            8999999999999999999999876 665      8999999999999999999999999999999      89999999


Q ss_pred             CCCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836          223 GLTALDVLLSFPSEAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       223 g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~  253 (455)
                      |+||||+|+.    .++.+++++|+++|+.+
T Consensus       346 g~t~l~~A~~----~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          346 DHTARQLAQA----NNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             SCCHHHHHHH----TTCHHHHHHHHTTC---
T ss_pred             CCCHHHHHHH----cCCHHHHHHHHhcCccc
Confidence            9999999975    48899999999998753

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-35  Score=288.97  Aligned_cols=228  Identities=24%  Similarity=0.294  Sum_probs=201.5

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      ..+..|.||||.|+..|+.++++.|++.+.+....  +..|.||||+|+..|+.+++++|++++.+ .+..|..|.||||
T Consensus        53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~  129 (351)
T 3utm_A           53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLH  129 (351)
T ss_dssp             CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence            45778999999999999999999999998765443  33599999999999999999999999987 5777999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccc-----------------------------------------------------cCCC
Q 012836           83 MASANGQIDVVRGLMKFDQKLCH-----------------------------------------------------LQGP  109 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~-----------------------------------------------------~~d~  109 (455)
                      +|+..|+.+++++|++++++...                                                     ..+.
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  209 (351)
T 3utm_A          130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ  209 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC
Confidence            99999999999999999877521                                                     2346


Q ss_pred             CCCCHHHHHHHh---CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCc
Q 012836          110 ERKTPLHFAAIK---GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT  186 (455)
Q Consensus       110 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T  186 (455)
                      .|.||||+|+..   ++.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      |.+|..|+|
T Consensus       210 ~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------n~~d~~g~t  282 (351)
T 3utm_A          210 SHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM------NALDSLGQT  282 (351)
T ss_dssp             TCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCC
T ss_pred             CCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCcCCCCCC
Confidence            678999999999   558999999987 8999999999999999999999999999999999887      899999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          187 ALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       187 ~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      |||+|+..|+.+++++|+++|+      +++.+|..|.||+++|        ..+++++|.+.+..+.
T Consensus       283 ~L~~A~~~~~~~~v~~Ll~~ga------d~~~~~~~g~tal~~a--------~~~~~~~l~~~~~~~~  336 (351)
T 3utm_A          283 ALHRAALAGHLQTCRLLLSYGS------DPSIISLQGFTAAQMG--------NEAVQQILSESTPMRT  336 (351)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHS--------CHHHHHHHHHC-----
T ss_pred             HHHHHHHcCcHHHHHHHHHcCC------CCCCcCCCCCChhhhh--------hHHHHHHHHhcccccc
Confidence            9999999999999999999999      8999999999999998        4678888888776443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=298.35  Aligned_cols=229  Identities=24%  Similarity=0.335  Sum_probs=204.5

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      ..++.|.|+||.|+..|+.++++.|++++.+....  +..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||
T Consensus         9 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~   85 (437)
T 1n11_A            9 GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLH   85 (437)
T ss_dssp             ------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHH
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHH
Confidence            45778999999999999999999999988765433  33589999999999999999999999987 5777899999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHH
Q 012836           83 MASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR  162 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~  162 (455)
                      +|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.++++.|++. +...+..+..|.||||+|+..|+.++++
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~  163 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAE  163 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999988 88899999999999999999999999998 7778888899999999999999999999


Q ss_pred             HHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhH
Q 012836          163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREI  242 (455)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i  242 (455)
                      +|+++|+++      +..|..|.||||+|+..++.+++++|+++|+      +++..+..|.||||+|+.    .++.++
T Consensus       164 ~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~----~~~~~~  227 (437)
T 1n11_A          164 LLLERDAHP------NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG------SPHSPAWNGYTPLHIAAK----QNQVEV  227 (437)
T ss_dssp             HHHHTTCCT------TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC------CSCCCCTTCCCHHHHHHH----TTCHHH
T ss_pred             HHHhCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC------CCCCcCCCCCCHHHHHHH----cCCHHH
Confidence            999998887      8889999999999999999999999999998      778888999999999975    478899


Q ss_pred             HHHHHHhccc
Q 012836          243 EEIFWSAGAM  252 (455)
Q Consensus       243 ~~~L~~~ga~  252 (455)
                      +++|++.|+.
T Consensus       228 ~~~Ll~~g~~  237 (437)
T 1n11_A          228 ARSLLQYGGS  237 (437)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999874

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.9e-35  Score=278.54  Aligned_cols=214  Identities=24%  Similarity=0.255  Sum_probs=181.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCc--chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHH
Q 012836           40 FASAGNPLHVASAYGHVDFVKEIIRLKPD--FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHF  117 (455)
Q Consensus        40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  117 (455)
                      +..|.||||+|+..|+.+++++|++.+++  ..+..|..|+||||+|+..|+.+++++|+++++++ +.+|..|.||||+
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~   84 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHL   84 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence            34699999999999999999999998765  36778899999999999999999999999999998 8889999999999


Q ss_pred             HHHhCCHHHHHHHHHhcC----------------------------------------------ccccccccCCCcHHHH
Q 012836          118 AAIKGRVDVVSEMLSAYG----------------------------------------------ECAEDVSVQRETVLHL  151 (455)
Q Consensus       118 A~~~g~~~~v~~Ll~~~~----------------------------------------------~~~~~~~~~g~t~Lh~  151 (455)
                      |+..|+.+++++|++...                                              .+++..+..|+||||+
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  164 (282)
T 1oy3_D           85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (282)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHH
Confidence            999999999999998632                                              2356678899999999


Q ss_pred             HHHcCCHHHHHHHHHHhhhhcccccccccCC-CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836          152 AVKNNQFEVVRALVDWIRDVKKENILNMKDK-QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       152 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a  230 (455)
                      |+..|+.+++++|+++|+++      +.++. .|+||||+|+..|+.+++++|+++|+      +++.+|..|+||||+|
T Consensus       165 A~~~g~~~~v~~Ll~~g~~~------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A  232 (282)
T 1oy3_D          165 AVIHKDAEMVRLLRDAGADL------NKPEPTCGRTPLHLAVEAQAASVLELLLKAGA------DPTARMYGGRTPLGSA  232 (282)
T ss_dssp             HHHTTCHHHHHHHHHHTCCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC------CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC------CCcccccCCCCHHHHH
Confidence            99999999999999999887      77775 49999999999999999999999999      8999999999999999


Q ss_pred             hhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccccc
Q 012836          231 LSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIST  279 (455)
Q Consensus       231 ~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (455)
                      +.    .++.+++++|+++|+..         ..++..|.+|+....+.
T Consensus       233 ~~----~~~~~~v~~Ll~~ga~~---------~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          233 LL----RPNPILARLLRAHGAPE---------PEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             HT----SSCHHHHHHHHHTTCCC---------CCCC-------------
T ss_pred             HH----cCCcHHHHHHHHcCCCc---------CcCCCcccccccccCCc
Confidence            74    48899999999999954         34556677776555443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.1e-35  Score=281.55  Aligned_cols=222  Identities=18%  Similarity=0.209  Sum_probs=197.7

Q ss_pred             cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836            2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM   81 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   81 (455)
                      ...+..|.||||.|+..|+.++++.|++.+.+....    .|.||||+|+..|+.+++++|++++.+ ++..|..|+|||
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~L   99 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTAL   99 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHH
Confidence            456788999999999999999999999998765443    389999999999999999999999988 577899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCccccccCCCCC-CCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHH
Q 012836           82 HMASANGQIDVVRGLMKFDQKLCHLQGPER-KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEV  160 (455)
Q Consensus        82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  160 (455)
                      |+|+..|+.+++++|+++++++ +.+|..| .||||+|+..|+.+++++|++. +.+.... ..|+||||+|+..|+.++
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~g~~~~  176 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFDL-AILLSCIHITIKNGHVDM  176 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCCC-STHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCccccc-cCCccHHHHHHHcChHHH
Confidence            9999999999999999999998 7888889 8999999999999999999998 4433222 289999999999999999


Q ss_pred             HHHHHHHhhhhcccccccccCCCCCcH-HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCc
Q 012836          161 VRALVDWIRDVKKENILNMKDKQGNTA-LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGD  239 (455)
Q Consensus       161 v~~Ll~~g~~~~~~~~~~~~d~~G~T~-Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~  239 (455)
                      +++|+++|+++      +.+|..|+|| ||+|+..++.+++++|+++|+      +++..|.       .+    ...++
T Consensus       177 v~~Ll~~gad~------n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga------d~~~~~~-------~a----~~~~~  233 (285)
T 3kea_A          177 MILLLDYMTST------NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI------NIYSANL-------EN----VLLDD  233 (285)
T ss_dssp             HHHHHHHHHHT------CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB------CSTTTTG-------GG----GTTTC
T ss_pred             HHHHHHcCCCC------CcccCCCCChHHHHHHHcCCHHHHHHHHHcCC------CCCCCCh-------hh----hhcCC
Confidence            99999999997      8999999998 999999999999999999999      7777774       22    23578


Q ss_pred             hhHHHHHHHhccccc
Q 012836          240 REIEEIFWSAGAMRM  254 (455)
Q Consensus       240 ~~i~~~L~~~ga~~~  254 (455)
                      .+++++|+++|+...
T Consensus       234 ~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          234 AEIAKMIIEKHVEYK  248 (285)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCC
Confidence            999999999999654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.7e-34  Score=263.60  Aligned_cols=210  Identities=26%  Similarity=0.307  Sum_probs=188.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcC--ccccccCCCCCCCHHHHHHH
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFD--QKLCHLQGPERKTPLHFAAI  120 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~d~~g~tpLh~A~~  120 (455)
                      |+||||.|+..|+.++++.|++.+++.....|..|.||||+|+..|+.+++++|++.+  .+.....+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            7899999999999999999999999877778999999999999999999999999999  55533388999999999999


Q ss_pred             hCCHHHHHHHHHhc-CccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHH
Q 012836          121 KGRVDVVSEMLSAY-GECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV  199 (455)
Q Consensus       121 ~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~i  199 (455)
                      .|+.+++++|++.. +.+++..+..|+||||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~  155 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV------RIKDKFNQIPLHRAASVGSLKL  155 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS------CCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc------cccCCCCCCHHHHHHHcCCHHH
Confidence            99999999999972 2788889999999999999999999999999998887      8999999999999999999999


Q ss_pred             HHHHHhcC-CCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHH-HhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          200 VELLLSHG-ANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFW-SAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       200 v~~Ll~~g-a~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~-~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      +++|++.| +      +++.+|..|+||||+|+..    ++.+++++|+ ++|+..         ..++..|.+|++...
T Consensus       156 v~~Ll~~g~~------~~~~~d~~g~t~L~~A~~~----~~~~~v~~Ll~~~ga~~---------~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          156 IELLCGLGKS------AVNWQDKQGWTPLFHALAE----GHGDAAVLLVEKYGAEY---------DLVDNKGAKAEDVAL  216 (228)
T ss_dssp             HHHHHTTTCC------CSCCCCTTSCCHHHHHHHT----TCHHHHHHHHHHHCCCS---------CCBCTTSCBGGGGCS
T ss_pred             HHHHHhcCcc------cccCcCCCCCCHHHHHHHc----CCHHHHHHHHHhcCCCC---------CccCCCCCcHHHHHH
Confidence            99999999 6      8899999999999999754    7889999999 889854         345567778866654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-35  Score=274.16  Aligned_cols=211  Identities=21%  Similarity=0.247  Sum_probs=164.7

Q ss_pred             CCCChHHHHHHHcC-------------CHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccC
Q 012836           41 ASAGNPLHVASAYG-------------HVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQ  107 (455)
Q Consensus        41 ~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~  107 (455)
                      ..|.||||+|+..|             +.++++.|++.+++.....|..|+||||+|+..|+.+++++|++.++++ +.+
T Consensus         8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~   86 (253)
T 1yyh_A            8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQ   86 (253)
T ss_dssp             --------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCC
Confidence            35999999999987             8999999999999877777999999999999999999999999999998 888


Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836          108 GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA  187 (455)
Q Consensus       108 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~  187 (455)
                      |..|.||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|++.|+++      +.+|..|+||
T Consensus        87 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~d~~g~t~  160 (253)
T 1yyh_A           87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV------NAVDDLGKSA  160 (253)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT------TCBCTTSCBH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC------CCcCCCCCCH
Confidence            9999999999999999999999999866689999999999999999999999999999999887      8999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCC
Q 012836          188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEP  267 (455)
Q Consensus       188 Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  267 (455)
                      ||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+.    .++.+++++|+++|+..         +.++.
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~---------~~~d~  221 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGA------NKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANR---------DITDH  221 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCT---------TCCCT
T ss_pred             HHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCc---------ccccc
Confidence            999999999999999999999      889999999999999974    47899999999999854         34456


Q ss_pred             CCCCcccccc
Q 012836          268 HGQTSVDNCI  277 (455)
Q Consensus       268 ~~~~~~~~~~  277 (455)
                      .|.+|++...
T Consensus       222 ~g~tpl~~A~  231 (253)
T 1yyh_A          222 MDRLPRDIAQ  231 (253)
T ss_dssp             TCCCHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            6777765543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.1e-34  Score=262.71  Aligned_cols=212  Identities=23%  Similarity=0.314  Sum_probs=193.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH
Q 012836           40 FASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA  119 (455)
Q Consensus        40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  119 (455)
                      +..|.||||+|+..|+.+++++|++++.+ .+..+..|.||||+|+..|+.+++++|++.+.+. +.++..|.||||+|+
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   85 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAA   85 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHH
Confidence            44699999999999999999999999987 5777899999999999999999999999999987 788999999999999


Q ss_pred             HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHH
Q 012836          120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV  199 (455)
Q Consensus       120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~i  199 (455)
                      ..|+.+++++|++..+.+++..+..|+||||+|+..++.+++++|+++|+++      +.+|..|+||||+|+..|+.++
T Consensus        86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI------NIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CccCCCCCCHHHHHHHCCCHHH
Confidence            9999999999999866889999999999999999999999999999999887      8899999999999999999999


Q ss_pred             HHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccccc
Q 012836          200 VELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIS  278 (455)
Q Consensus       200 v~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      +++|+++|+      +++.+|..|.||||+|+.    .++.+++++|+++|+..         ..++..|.+|++....
T Consensus       160 ~~~Ll~~g~------~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~---------~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          160 AEILLAAKC------DLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDV---------TLKNKEGETPLQCASL  219 (237)
T ss_dssp             HHHHHTTTC------CTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCT---------TCCCTTSCCHHHHSCT
T ss_pred             HHHHHHcCC------CCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCC---------CccCCCCCCHHHHHHH
Confidence            999999998      889999999999999975    47899999999999853         3455677777655443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.8e-34  Score=264.30  Aligned_cols=198  Identities=20%  Similarity=0.282  Sum_probs=176.7

Q ss_pred             ccCHHHHHHHHcCCHHHHHHHHhc-CCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcch----hhhcCCCCcHH
Q 012836            7 RMDRRLIAAALTGDVQTLQQLFVE-NPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFA----KEVNQDGFSPM   81 (455)
Q Consensus         7 ~~~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~g~tpL   81 (455)
                      .|+|+||.|+..|+.+.++.|+++ +.+.. .. +..|.||||+|+..|+.+++++|++.+++..    ...|..|.|||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L   79 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL   79 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cC-CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence            478999999999999999999998 44433 32 3459999999999999999999999987743    45577899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCccccccCCC-------------CCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcH
Q 012836           82 HMASANGQIDVVRGLMKFDQKLCHLQGP-------------ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETV  148 (455)
Q Consensus        82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  148 (455)
                      |+|+..|+.+++++|++++++. +.++.             +|.||||+|+..|+.+++++|+++ |.+++..|..|+||
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~  157 (232)
T 2rfa_A           80 HIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTV  157 (232)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCH
Confidence            9999999999999999999887 44443             799999999999999999999997 89999999999999


Q ss_pred             HHHHHHcCCHHHH----HHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          149 LHLAVKNNQFEVV----RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       149 Lh~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      ||+|+..++.+++    ++|+++|++.....+.+.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            9999999999988    99999998775555567899999999999999999999999999987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.3e-34  Score=258.96  Aligned_cols=196  Identities=19%  Similarity=0.210  Sum_probs=183.3

Q ss_pred             cCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHH
Q 012836            4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHM   83 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   83 (455)
                      .+..+.|+||.|+..|+.++++.|++.+.+....  +..|.||||+|+..|+.+++++|++.++...+..+..|.||||+
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   98 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL   98 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHH
Confidence            3678999999999999999999999988765433  33599999999999999999999999986678889999999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836           84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA  163 (455)
Q Consensus        84 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~  163 (455)
                      |+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++
T Consensus        99 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  176 (223)
T 2f8y_A           99 AARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKV  176 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHH
Confidence            99999999999999999998 88899999999999999999999999998 89999999999999999999999999999


Q ss_pred             HHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCC
Q 012836          164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN  209 (455)
Q Consensus       164 Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~  209 (455)
                      |+++|+++      +.+|..|.||||+|+..++.+++++|+++|+.
T Consensus       177 Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          177 LLDHFANR------DITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHcCCCC------ccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            99999887      88999999999999999999999999999984

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1e-33  Score=274.40  Aligned_cols=226  Identities=18%  Similarity=0.186  Sum_probs=192.3

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCC-------------------------------CCCCCCChHHHHHHHcC
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHT-------------------------------PAFASAGNPLHVASAYG   54 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------------------------------~~~~~g~t~Lh~A~~~g   54 (455)
                      ..|.||||.|+..|+.++++.|++.+......                               ..+..|.||||+|+..|
T Consensus        57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~  136 (337)
T 4g8k_A           57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG  136 (337)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcC
Confidence            35899999999999999999999987653221                               12235899999999999


Q ss_pred             CHHHHHHHHHcCCcch---------hhhcCCCCcHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCCHHHHHHHhCC-
Q 012836           55 HVDFVKEIIRLKPDFA---------KEVNQDGFSPMHMASANGQIDVVRGLMKF-DQKLCHLQGPERKTPLHFAAIKGR-  123 (455)
Q Consensus        55 ~~~~v~~Ll~~~~~~~---------~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~-  123 (455)
                      +.+++++|++++.+..         ...+..|.||||+|+..|+.+++++|+++ ++++ +.+|..|.||+|.++..++ 
T Consensus       137 ~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~  215 (337)
T 4g8k_A          137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDD  215 (337)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCT
T ss_pred             cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCc
Confidence            9999999999987532         23456799999999999999999999965 7776 8899999999999887654 


Q ss_pred             ---HHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHH-hhhhcccccccccCCCCCcHHHHHHhcCChHH
Q 012836          124 ---VDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW-IRDVKKENILNMKDKQGNTALHLATWKRECQV  199 (455)
Q Consensus       124 ---~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~i  199 (455)
                         .++++.|+++ |.+++..|.+|+||||+|+..|+.++++.|++. |.++      |.+|.+|+||||+|+..|+.++
T Consensus       216 ~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v------n~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          216 SDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI------NDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             TTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT------TCBCTTSCBHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc------cCcCCCCCCHHHHHHHcCCHHH
Confidence               3577777776 899999999999999999999999999999974 5555      8999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          200 VELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       200 v~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      +++|+++|+      +++.     .+||++|+.    .++.+++++|+++||...
T Consensus       289 v~~Ll~~GA------d~n~-----~~~L~~A~~----~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          289 AELLCKRGA------STDC-----GDLVMTARR----NYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             HHHHHTTSC------SSTT-----CCHHHHHHH----TTCHHHHHHHHHTTCCC-
T ss_pred             HHHHHHCCC------CCCC-----CCHHHHHHH----cCCHHHHHHHHHCcCCCC
Confidence            999999999      5554     469999975    478999999999999754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-35  Score=290.51  Aligned_cols=250  Identities=17%  Similarity=0.176  Sum_probs=206.5

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHH--------HcCCcchhhhc
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEII--------RLKPDFAKEVN   74 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~   74 (455)
                      ..+..+.|+||.|+..|+ ++++.|+..+.   +..+...|.||||+|+..|+.+++++|+        +.+.+ ++..|
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~~---n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d  163 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITRESV---NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMD  163 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCSTTTT---TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCC
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhccccc---cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCC
Confidence            346788999999999554 77777765332   2222245999999999999998887776        66776 67789


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcC--ccccccccCCCcHHHHH
Q 012836           75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYG--ECAEDVSVQRETVLHLA  152 (455)
Q Consensus        75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~t~Lh~A  152 (455)
                      ..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++...  .+++..|..|.||||+|
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A  242 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  242 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence            99999999999999999999999999998 7889999999999999999999999998732  67888999999999999


Q ss_pred             HHcC---CHHHHHHHHHHhhhhccc--ccccccCCCCCcHHHHHHhcCChHHHHHHHhcC-CCCCCCccccccCCCCCCH
Q 012836          153 VKNN---QFEVVRALVDWIRDVKKE--NILNMKDKQGNTALHLATWKRECQVVELLLSHG-ANASGGLEVNATNHSGLTA  226 (455)
Q Consensus       153 ~~~~---~~~~v~~Ll~~g~~~~~~--~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g-a~~~~~v~~~~~n~~g~t~  226 (455)
                      +..+   +.+++++|+++|+++...  ...+.+|..|+||||+|+..|+.+++++|++++ +      +++.+|..|.||
T Consensus       243 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~------~~n~~d~~g~Tp  316 (373)
T 2fo1_E          243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS------NKDKQDEDGKTP  316 (373)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC------CTTCCCTTCCCH
T ss_pred             HHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC------CccCcCCCCCCH
Confidence            9998   899999999999887321  123457889999999999999999999999886 6      899999999999


Q ss_pred             HHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          227 LDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       227 l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      ||+|+.    .++.+++++|+++|+..         +..+..|.+++....
T Consensus       317 L~~A~~----~g~~~iv~~Ll~~gad~---------~~~d~~g~t~l~~A~  354 (373)
T 2fo1_E          317 IMLAAQ----EGRIEVVMYLIQQGASV---------EAVDATDHTARQLAQ  354 (373)
T ss_dssp             HHHHHH----HTCHHHHHHHHHTTCCS---------SCCCSSSCCHHHHHH
T ss_pred             HHHHHH----cCCHHHHHHHHHcCCCc---------cCCCCCCCCHHHHHH
Confidence            999975    48899999999999853         334556777755443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=7.2e-34  Score=254.31  Aligned_cols=191  Identities=21%  Similarity=0.220  Sum_probs=89.0

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      +.|+||.|+..|+.+.++.|+.+++......+ ..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|+..
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            34445555555555555555544432222211 1244555555555555555555544444 233444445555555555


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCC-----HHHHH
Q 012836           88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ-----FEVVR  162 (455)
Q Consensus        88 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~v~  162 (455)
                      |+.+++++|++.+....+.+|..|.||||+|+..|+.+++++|++..+.+++..|..|+||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            5555555554332222244444445555555555555555555544324444444445555555554444     44455


Q ss_pred             HHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhc
Q 012836          163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH  206 (455)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~  206 (455)
                      +|+++|+++      +.+|..|+||||+|+..|+.+++++|+++
T Consensus       163 ~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          163 LLMENGADQ------SIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHCCCCC------CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            555444443      44444555555555555555555554443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.4e-33  Score=259.52  Aligned_cols=212  Identities=25%  Similarity=0.253  Sum_probs=188.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHH----cCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHH
Q 012836           40 FASAGNPLHVASAYGHVDFVKEIIR----LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPL  115 (455)
Q Consensus        40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpL  115 (455)
                      +..|.||||+|+..|+.+++++|++    .+.+ .+..|..|.||||+|+..|+.+++++|++.+.+. +.+|..|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l   83 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA   83 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence            3469999999999999999999998    3444 6778999999999999999999999999999988 78899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhcC---ccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccC-CCCCcHHHHH
Q 012836          116 HFAAIKGRVDVVSEMLSAYG---ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKD-KQGNTALHLA  191 (455)
Q Consensus       116 h~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d-~~G~T~Lh~A  191 (455)
                      |+|+..|+.+++++|++...   .+++..+..|+||||+|+..|+.+++++|++.|.++      +..| ..|+||||+|
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI------DAVDIKSGRSPLIHA  157 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTTCCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc------ccccccCCCcHHHHH
Confidence            99999999999999999843   277888899999999999999999999999999887      7777 8899999999


Q ss_pred             HhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCC
Q 012836          192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQT  271 (455)
Q Consensus       192 ~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~  271 (455)
                      +..|+.+++++|+++|+      +++.+|..|.||||+|+.    .++.+++++|+++|+..         +.++..|.+
T Consensus       158 ~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~---------~~~~~~g~t  218 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGA------NVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADS---------SLKNCHNDT  218 (241)
T ss_dssp             HHTTCHHHHHHHHHTTC------CTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCT---------TCCCTTSCC
T ss_pred             HHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCC---------CCcCCCCCC
Confidence            99999999999999998      899999999999999974    47899999999999854         344566777


Q ss_pred             ccccccc
Q 012836          272 SVDNCIS  278 (455)
Q Consensus       272 ~~~~~~~  278 (455)
                      |++...+
T Consensus       219 pl~~A~~  225 (241)
T 1k1a_A          219 PLMVARS  225 (241)
T ss_dssp             TTTTCSS
T ss_pred             HHHHHHh
Confidence            7665543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.6e-34  Score=283.04  Aligned_cols=234  Identities=16%  Similarity=0.088  Sum_probs=198.9

Q ss_pred             cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc----CCcchhh-----
Q 012836            2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRL----KPDFAKE-----   72 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~~-----   72 (455)
                      +..+..|.|+||.|+..|+.++++.|++.+.....    ..|.||||+|+..|+.+++++|++.    +.+ .+.     
T Consensus        47 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~  121 (364)
T 3ljn_A           47 TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQKPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNEC  121 (364)
T ss_dssp             TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC----BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc----cCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhc
Confidence            35677899999999999999999999999883322    2589999999999999999999998    555 333     


Q ss_pred             ------------hcCCCCcHHHHHHHcC--CHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcc-
Q 012836           73 ------------VNQDGFSPMHMASANG--QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGEC-  137 (455)
Q Consensus        73 ------------~~~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-  137 (455)
                                  .|..|.||||+|+..|  +.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++. +.+ 
T Consensus       122 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~  199 (364)
T 3ljn_A          122 DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDT-VPSK  199 (364)
T ss_dssp             CCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CSCS
T ss_pred             chHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhc-cccc
Confidence                        6889999999999999  999999999999998 88999999999999999999999999997 666 


Q ss_pred             ----ccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCC--
Q 012836          138 ----AEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS--  211 (455)
Q Consensus       138 ----~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~--  211 (455)
                          ++..|..|+||||+|+..|+.+++++|+++|+++      +.+|.+|+||||+|+..|+.+++++|+++|+...  
T Consensus       200 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  273 (364)
T 3ljn_A          200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV------NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ  273 (364)
T ss_dssp             SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT------TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred             ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhh
Confidence                8899999999999999999999999999999987      8999999999999999999999999999987310  


Q ss_pred             ----CCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccc
Q 012836          212 ----GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       212 ----~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~  252 (455)
                          ..-.....+..++||++.|.    ..+..+.+..|+..++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~aa----~~~~~~~v~~ll~~~~~  314 (364)
T 3ljn_A          274 ACPYHNGTTVLPDRVVWLDFVPAA----ADPSKQEVLQLLQEKLD  314 (364)
T ss_dssp             TCTTBSSSSBCGGGCCCCTTSCSS----CCHHHHHHHHHHHHHHH
T ss_pred             cCcccCcccccccccccccchhhh----hccCHHHHHHHHHHHHH
Confidence                00112235667888888774    44555555555555554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=9.2e-34  Score=253.59  Aligned_cols=180  Identities=25%  Similarity=0.328  Sum_probs=168.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .+.||||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            47899999999999999999999988557888999999999999999999999999999998 88999999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHh-hhhcccccccccCCCCCcHHHHHHhcCC----
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWI-RDVKKENILNMKDKQGNTALHLATWKRE----  196 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~d~~G~T~Lh~A~~~~~----  196 (455)
                      |+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|+++| .++      +.+|..|+||||+|+..++    
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~~g~t~L~~A~~~~~~~~~  156 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI------DFQNDFGYTALIEAVGLREGNQL  156 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT------TCCCTTSCCHHHHHHHSSCCSHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc------CCCCCCCCCHHHHHHHhccchhh
Confidence            99999999998888899999999999999999999999999999988 665      8999999999999999998    


Q ss_pred             -hHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCC
Q 012836          197 -CQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP  234 (455)
Q Consensus       197 -~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~  234 (455)
                       .+++++|+++|++.+      .+|..|.||||+|+...
T Consensus       157 ~~~~v~~Ll~~ga~~~------~~~~~g~t~l~~A~~~~  189 (201)
T 3hra_A          157 YQDIVKLLMENGADQS------IKDNSGRTAMDYANQKG  189 (201)
T ss_dssp             HHHHHHHHHHTTCCTT------CCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCC------ccCCCCCCHHHHHHHcC
Confidence             999999999999884      57889999999997654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.1e-35  Score=273.39  Aligned_cols=217  Identities=18%  Similarity=0.154  Sum_probs=187.1

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcc--cCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLI--LHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSP   80 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp   80 (455)
                      ..+..|.|+||.|+..|+.++++.|++.+...  .....+..|.||||+|+..|+.+++++|++++.+ ++..|..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            46789999999999999999999999876542  1122234599999999999999999999999987 57779999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCccc-----cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccccc-CCCcHHHHHHH
Q 012836           81 MHMASANGQIDVVRGLMKFDQKL-----CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV-QRETVLHLAVK  154 (455)
Q Consensus        81 Lh~Aa~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~  154 (455)
                      ||+|+..|+.+++++|++.+++.     ....+..|.||||+|+..|+.+++++|++. +.+++..+. .|+||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999998642     467888999999999999999999999998 889999987 99999999999


Q ss_pred             cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      .|+.+++++|+++|+++      +.+|..|+||||+|+..++.+++++|+++|++.    .....+..|.|+.+.+.
T Consensus       161 ~~~~~~v~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~----~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADV------NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN----LQMLPESEDEESYDTES  227 (236)
T ss_dssp             TTCHHHHHHHHTTTCCS------CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG----GSSCCCCCTTTCCCCC-
T ss_pred             cCCHHHHHHHHHcCCCC------CcccCCCCCHHHHHHccCchHHHHHHHHcchhh----hhcCCccchHHHHhhhc
Confidence            99999999999999887      899999999999999999999999999999942    34478899999987764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.1e-33  Score=258.76  Aligned_cols=209  Identities=23%  Similarity=0.270  Sum_probs=191.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .+.||||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence            37899999999999999999999998878888999999999999999999999999999987 78899999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      |+.+++++|+++ +.+++..|..|+||||+|+..++.+++++|+++|.++      +.+|..|+||||+|+..|+.++++
T Consensus        84 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~  156 (231)
T 3aji_A           84 GXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP------DAKDHYDATAMHRAAAKGNLKMVH  156 (231)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCcHHHHHHHcCCHHHHH
Confidence            999999999997 8889999999999999999999999999999998887      889999999999999999999999


Q ss_pred             HHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          202 LLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       202 ~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      +|+++|+      +++.+|..|.||||+|+..    ++.+++++|+++|+..         ..++..|.+|++...
T Consensus       157 ~Ll~~g~------~~~~~~~~g~t~L~~A~~~----~~~~~v~~Ll~~ga~~---------~~~~~~g~t~l~~A~  213 (231)
T 3aji_A          157 ILLFYKA------STNIQDTEGNTPLHLACDE----ERVEEAKFLVTQGASI---------YIENKEEKTPLQVAK  213 (231)
T ss_dssp             HHHHTTC------CSCCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCS---------CCCCTTSCCHHHHSC
T ss_pred             HHHhcCC------CccccCCCCCCHHHHHHHC----CCHHHHHHHHHCCCCC---------CCCCCCCCCHHHHHH
Confidence            9999998      8899999999999999754    7899999999999853         344566777755443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1e-34  Score=266.91  Aligned_cols=200  Identities=25%  Similarity=0.304  Sum_probs=179.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCc---chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHH
Q 012836           41 ASAGNPLHVASAYGHVDFVKEIIRLKPD---FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHF  117 (455)
Q Consensus        41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  117 (455)
                      ..|.||||+|+..|+.+++++|++.+..   ..+..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus         6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   84 (236)
T 1ikn_D            6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHL   84 (236)
T ss_dssp             -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHH
T ss_pred             CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence            4599999999999999999999998753   36778899999999999999999999999999998 8899999999999


Q ss_pred             HHHhCCHHHHHHHHHhcC-----ccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCC-CCCcHHHHH
Q 012836          118 AAIKGRVDVVSEMLSAYG-----ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDK-QGNTALHLA  191 (455)
Q Consensus       118 A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~-~G~T~Lh~A  191 (455)
                      |+..|+.+++++|++...     ...+..+..|.||||+|+..|+.+++++|+++|+++      +.+|. .|+||||+|
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV------NAQEPCNGRTALHLA  158 (236)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT------TCCCTTTCCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCCCCHHHHH
Confidence            999999999999999742     225677889999999999999999999999999887      88887 999999999


Q ss_pred             HhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccC
Q 012836          192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDL  257 (455)
Q Consensus       192 ~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~  257 (455)
                      +..|+.+++++|+++|+      +++.+|..|.||||+|+    ..++.+++++|+++|+.....+
T Consensus       159 ~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~----~~~~~~~~~~Ll~~ga~~~~~~  214 (236)
T 1ikn_D          159 VDLQNPDLVSLLLKCGA------DVNRVTYQGYSPYQLTW----GRPSTRIQQQLGQLTLENLQML  214 (236)
T ss_dssp             HHTTCHHHHHHHHTTTC------CSCCCCTTCCCGGGGCT----TSSCHHHHHHHHTTSCGGGSSC
T ss_pred             HHcCCHHHHHHHHHcCC------CCCcccCCCCCHHHHHH----ccCchHHHHHHHHcchhhhhcC
Confidence            99999999999999999      89999999999999995    4588999999999999765433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-33  Score=267.06  Aligned_cols=243  Identities=23%  Similarity=0.259  Sum_probs=205.7

Q ss_pred             HHHHcCCHHHHHHHHhcCCcccCCCC-------CCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH
Q 012836           14 AAALTGDVQTLQQLFVENPLILHTPA-------FASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA   86 (455)
Q Consensus        14 ~A~~~g~~~~v~~Ll~~~~~~~~~~~-------~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   86 (455)
                      .++..|..+.++.++...........       ...+.||||.||..|+.+++++|++.+.+ ++..|..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence            57888899999999987654322111       11377999999999999999999999987 57789999999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 012836           87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD  166 (455)
Q Consensus        87 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  166 (455)
                      .|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..++.++++.++.
T Consensus        83 ~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           83 DDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence            99999999999999998 88899999999999999999999999998 88999999999999999999999999998876


Q ss_pred             Hh-hhhcc--------------------cccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCC
Q 012836          167 WI-RDVKK--------------------ENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT  225 (455)
Q Consensus       167 ~g-~~~~~--------------------~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t  225 (455)
                      .. .+...                    .......+..|.||||+|+..|+.+++++|+++|+      +++.+|..|.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------d~~~~d~~g~t  234 (299)
T 1s70_B          161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYDGWT  234 (299)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCC
T ss_pred             hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC------CCCCcCCCCCc
Confidence            42 22110                    01123467889999999999999999999999998      89999999999


Q ss_pred             HHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccccc
Q 012836          226 ALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCIS  278 (455)
Q Consensus       226 ~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      |||+|+..    ++.+++++|+++|+..         +.++..|.+|++...+
T Consensus       235 pL~~A~~~----~~~~~v~~Ll~~gad~---------~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          235 PLHAAAHW----GKEEACRILVENLCDM---------EAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHHHHT----TCHHHHHHHHHTTCCT---------TCCCTTSCCTTTSCCS
T ss_pred             HHHHHHhc----CCHHHHHHHHHcCCCC---------CCcCCCCCCHHHHHHH
Confidence            99999754    7899999999999853         3456778888776644

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.7e-34  Score=269.23  Aligned_cols=214  Identities=15%  Similarity=0.082  Sum_probs=189.4

Q ss_pred             HHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHH
Q 012836           15 AALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVR   94 (455)
Q Consensus        15 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~   94 (455)
                      ++...+.+.+..+|.++. . . ..+..|.||||+|+..|+.+++++|++.+.++ +..  +|+||||+|+..|+.++++
T Consensus         6 ~i~~~~~~~v~~lL~~~~-~-~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSKD-T-F-KADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             TGGGCCHHHHHHHHHSTT-T-T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHH
T ss_pred             HHHhcCHHHHHHHHHhCC-C-C-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHH
Confidence            356778888888887652 2 2 22345999999999999999999999998774 433  5999999999999999999


Q ss_pred             HHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCC-CcHHHHHHHcCCHHHHHHHHHHhhhhcc
Q 012836           95 GLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQR-ETVLHLAVKNNQFEVVRALVDWIRDVKK  173 (455)
Q Consensus        95 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~  173 (455)
                      +|+++++++ +.+|..|.||||+|+..|+.+++++|++. +.+++..+..| .||||+|+..|+.+++++|+++|++.  
T Consensus        80 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--  155 (285)
T 3kea_A           80 ILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--  155 (285)
T ss_dssp             HHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT--
T ss_pred             HHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc--
Confidence            999999998 78999999999999999999999999998 89999999999 89999999999999999999988654  


Q ss_pred             cccccccCC-CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCH-HHHHhhCCCCcCchhHHHHHHHhcc
Q 012836          174 ENILNMKDK-QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTA-LDVLLSFPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       174 ~~~~~~~d~-~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~-l~~a~~~~~~~~~~~i~~~L~~~ga  251 (455)
                            .|. .|+||||+|+..|+.+++++|+++|+      +++.+|..|.|| ||+|+.    .++.+++++|+++|+
T Consensus       156 ------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga------d~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~ga  219 (285)
T 3kea_A          156 ------FDLAILLSCIHITIKNGHVDMMILLLDYMT------STNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDI  219 (285)
T ss_dssp             ------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHH------HTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCB
T ss_pred             ------ccccCCccHHHHHHHcChHHHHHHHHHcCC------CCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCC
Confidence                  233 89999999999999999999999998      899999999998 999974    478999999999999


Q ss_pred             ccc
Q 012836          252 MRM  254 (455)
Q Consensus       252 ~~~  254 (455)
                      ...
T Consensus       220 d~~  222 (285)
T 3kea_A          220 NIY  222 (285)
T ss_dssp             CST
T ss_pred             CCC
Confidence            654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.8e-34  Score=269.91  Aligned_cols=218  Identities=15%  Similarity=0.159  Sum_probs=173.7

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhc----CCcccCC--CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCcc----
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVE----NPLILHT--PAFASAGNPLHVASAY---GHVDFVKEIIRLKPDF----   69 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~--~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~----   69 (455)
                      ..+..+.|+||.|+..|+.+.++.|++.    +......  ..+..|.||||+|+..   |+.+++++|++.+++.    
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            4677899999999999999999999874    3222211  2234699999999987   9999999999987532    


Q ss_pred             --h----hhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCC--------------CCCCHHHHHHHhCCHHHHHH
Q 012836           70 --A----KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGP--------------ERKTPLHFAAIKGRVDVVSE  129 (455)
Q Consensus        70 --~----~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~~~v~~  129 (455)
                        .    ...|..|.||||+|+..|+.+++++|++.++++ +.++.              .|.||||+|+..|+.+++++
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence              1    124678999999999999999999999999988 66665              79999999999999999999


Q ss_pred             HHHh--cCccccccccCCCcHHHHHHHcCC---------HHHHHHHHHHhhhhcc-cccccccCCCCCcHHHHHHhcCCh
Q 012836          130 MLSA--YGECAEDVSVQRETVLHLAVKNNQ---------FEVVRALVDWIRDVKK-ENILNMKDKQGNTALHLATWKREC  197 (455)
Q Consensus       130 Ll~~--~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~Ll~~g~~~~~-~~~~~~~d~~G~T~Lh~A~~~~~~  197 (455)
                      |++.  .+.+++..|.+|+||||+|+..|+         .+++++|+++|+++.. ...++.+|..|+||||+|+..|+.
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            9994  489999999999999999999998         7999999999998721 122346899999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCccccccCCCCCCH
Q 012836          198 QVVELLLSHGANASGGLEVNATNHSGLTA  226 (455)
Q Consensus       198 ~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~  226 (455)
                      +++++|+++|+.     ++......+.+|
T Consensus       247 ~iv~~Ll~~ga~-----dp~~~~~~~~~~  270 (273)
T 2pnn_A          247 GVLAYILQREIH-----EPECRHAAAHHH  270 (273)
T ss_dssp             HHHHHHHHHHTC-----------------
T ss_pred             HHHHHHHHCCCC-----Cchhhhhhhhhc
Confidence            999999999984     455555555544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2e-33  Score=261.50  Aligned_cols=195  Identities=21%  Similarity=0.226  Sum_probs=164.5

Q ss_pred             CChHHHHHHHcCCHH----HHHHHHHcCCcchhh----hcCCCCcHHHHHHHc---CCHHHHHHHHhcCccccc------
Q 012836           43 AGNPLHVASAYGHVD----FVKEIIRLKPDFAKE----VNQDGFSPMHMASAN---GQIDVVRGLMKFDQKLCH------  105 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~~~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~------  105 (455)
                      |+||||.|+..|+.+    ++++|++.+.++ +.    .|..|+||||+|+..   |+.+++++|++.+++...      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            678888888888886    556666677663 44    678888888888888   888888888888766521      


Q ss_pred             ----cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccC-------------CCcHHHHHHHcCCHHHHHHHHH--
Q 012836          106 ----LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ-------------RETVLHLAVKNNQFEVVRALVD--  166 (455)
Q Consensus       106 ----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~Lh~A~~~~~~~~v~~Ll~--  166 (455)
                          .+|..|.||||+|+..|+.+++++|++. +.+++..+..             |+||||+|+..|+.+++++|++  
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                1346788899999988888888888887 7778877765             9999999999999999999999  


Q ss_pred             -HhhhhcccccccccCCCCCcHHHHHHh--cCChH-------HHHHHHhcCCCCCCCccc-------cccCCCCCCHHHH
Q 012836          167 -WIRDVKKENILNMKDKQGNTALHLATW--KRECQ-------VVELLLSHGANASGGLEV-------NATNHSGLTALDV  229 (455)
Q Consensus       167 -~g~~~~~~~~~~~~d~~G~T~Lh~A~~--~~~~~-------iv~~Ll~~ga~~~~~v~~-------~~~n~~g~t~l~~  229 (455)
                       .|+++      |.+|.+|+||||+|+.  .++.+       ++++|+++|+      ++       +.+|..|+||||+
T Consensus       160 ~~ga~~------n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga------~~~~~~~~~~~~d~~g~tpL~~  227 (256)
T 2etb_A          160 HQPASL------EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA------RLCPTVQLEEISNHQGLTPLKL  227 (256)
T ss_dssp             SCCCCT------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH------HHSTTCCGGGCCCTTSCCHHHH
T ss_pred             ccCCCc------CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC------CcccccccccccCCCCCCHHHH
Confidence             88887      8999999999999998  78888       9999999999      67       8999999999999


Q ss_pred             HhhCCCCcCchhHHHHHHHhcccccc
Q 012836          230 LLSFPSEAGDREIEEIFWSAGAMRMR  255 (455)
Q Consensus       230 a~~~~~~~~~~~i~~~L~~~ga~~~~  255 (455)
                      |+.    .++.+++++|+++|+....
T Consensus       228 A~~----~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          228 AAK----EGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             HHH----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHH----hCCHHHHHHHHhCCCCCCC
Confidence            975    4889999999999996543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.4e-32  Score=238.90  Aligned_cols=155  Identities=34%  Similarity=0.454  Sum_probs=139.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCH
Q 012836           45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV  124 (455)
Q Consensus        45 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  124 (455)
                      ++|+.||+.|+.++|+.|++.+.+ ++.+|.+|+||||+|+..++.+++++|++.++++ +.+|.+|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            578999999999999999999887 5778899999999999999999999999999888 78899999999999999999


Q ss_pred             HHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836          125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL  204 (455)
Q Consensus       125 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  204 (455)
                      +++++|+++ |.+++.+|.+|+||||+|+..|+.+++++|+++|+++      +.+|.+|+||||+|+..|+.+++++|+
T Consensus        84 ~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~------~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           84 EVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV------NTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999987 8889999999999999999999999999999998887      889999999999999999999999999


Q ss_pred             hcCC
Q 012836          205 SHGA  208 (455)
Q Consensus       205 ~~ga  208 (455)
                      ++|+
T Consensus       157 ~~GA  160 (169)
T 4gpm_A          157 KQGG  160 (169)
T ss_dssp             TC--
T ss_pred             HCCC
Confidence            9998

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-33  Score=259.96  Aligned_cols=209  Identities=26%  Similarity=0.340  Sum_probs=163.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcc-------hhhhcCCCCcHHHHHHHcCCH-HHHHHHHhcCccccccCCCCCCC
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDF-------AKEVNQDGFSPMHMASANGQI-DVVRGLMKFDQKLCHLQGPERKT  113 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~tpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t  113 (455)
                      .+.+||+.||..|+.++|++|++.+...       .+..+..|.||||.|+..++. .++++|++.|+++ +.+|.+|+|
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~T   88 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSS   88 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCC
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCC
Confidence            3679999999999999999999987642       345677899999999988775 5889999999998 889999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHh
Q 012836          114 PLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATW  193 (455)
Q Consensus       114 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~  193 (455)
                      |||+|+..|+.+++++|++. +.+++..+..|.||+|+|+..++.+++++|++.|+++      |.+|..|+||||+|+.
T Consensus        89 pLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~------n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           89 PLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP------NKKDLSGNTPLIYACS  161 (269)
T ss_dssp             HHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------CCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHH
Confidence            99999999999999999987 8889999999999999999999999999999999887      8999999999999999


Q ss_pred             cCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcc
Q 012836          194 KRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSV  273 (455)
Q Consensus       194 ~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~  273 (455)
                      .|+.+++++|+++|+      ++|.+|..|.||||+|+.    .++.+++++|+++|++.         +.++..|.||+
T Consensus       162 ~g~~~~v~~Ll~~ga------dvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~---------~~~d~~G~TpL  222 (269)
T 4b93_B          162 GGHHELVALLLQHGA------SINASNNKGNTALHEAVI----EKHVFVVELLLLHGASV---------QVLNKRQRTAV  222 (269)
T ss_dssp             TTCGGGHHHHHHTTC------CTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCS---------CCCCTTSCCSG
T ss_pred             CCCHHHHHHHHHCCC------CCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCC---------CCcCCCCCCHH
Confidence            999999999999998      899999999999999975    48899999999999854         34566788887


Q ss_pred             cccc
Q 012836          274 DNCI  277 (455)
Q Consensus       274 ~~~~  277 (455)
                      ....
T Consensus       223 ~~A~  226 (269)
T 4b93_B          223 DCAE  226 (269)
T ss_dssp             GGSC
T ss_pred             HHHH
Confidence            6553

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=9.5e-33  Score=256.90  Aligned_cols=200  Identities=21%  Similarity=0.238  Sum_probs=171.4

Q ss_pred             cCHHHHHHHHcCCHH----HHHHHHhcCCcccCC--CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCcchh-------
Q 012836            8 MDRRLIAAALTGDVQ----TLQQLFVENPLILHT--PAFASAGNPLHVASAY---GHVDFVKEIIRLKPDFAK-------   71 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~--~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~-------   71 (455)
                      |.|+||.|+..|+.+    +++.|++.+.+....  ..+..|.||||+|+..   |+.+++++|++.+++...       
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            679999999999997    556666677665540  1234599999999999   999999999998765321       


Q ss_pred             ---hhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCC-------------CCCHHHHHHHhCCHHHHHHHHHh--
Q 012836           72 ---EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE-------------RKTPLHFAAIKGRVDVVSEMLSA--  133 (455)
Q Consensus        72 ---~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~~--  133 (455)
                         ..|..|.||||+|+..|+.+++++|++.++++ +.+|..             |.||||+|+..|+.+++++|++.  
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence               23467999999999999999999999999998 666665             99999999999999999999994  


Q ss_pred             cCccccccccCCCcHHHHHHH--cCCHH-------HHHHHHHHhhhhccc-ccccccCCCCCcHHHHHHhcCChHHHHHH
Q 012836          134 YGECAEDVSVQRETVLHLAVK--NNQFE-------VVRALVDWIRDVKKE-NILNMKDKQGNTALHLATWKRECQVVELL  203 (455)
Q Consensus       134 ~~~~~~~~~~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~g~~~~~~-~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  203 (455)
                      .|.+++..|.+|+||||+|+.  .++.+       ++++|+++|+++... .+.+.+|..|+||||+|+..|+.+++++|
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  240 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI  240 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            499999999999999999999  78888       999999999886322 22378999999999999999999999999


Q ss_pred             HhcCC
Q 012836          204 LSHGA  208 (455)
Q Consensus       204 l~~ga  208 (455)
                      +++|+
T Consensus       241 l~~g~  245 (256)
T 2etb_A          241 LQREF  245 (256)
T ss_dssp             HHHHH
T ss_pred             HhCCC
Confidence            99987

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=2.1e-32  Score=255.06  Aligned_cols=202  Identities=15%  Similarity=0.134  Sum_probs=172.4

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHh----cCCcccCCCC--CCCCChHHHHHH---HcCCHHHHHHHHHcCCcc-------
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFV----ENPLILHTPA--FASAGNPLHVAS---AYGHVDFVKEIIRLKPDF-------   69 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~--~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~-------   69 (455)
                      .-+.++||.|++.|+.+.++.|++    .+........  +..|.||||+|+   ..|+.+++++|++.+.+.       
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            456789999999999997666665    6666544332  245999999999   679999999999986431       


Q ss_pred             ---hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCC--------------CCCCCHHHHHHHhCCHHHHHHHHH
Q 012836           70 ---AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--------------PERKTPLHFAAIKGRVDVVSEMLS  132 (455)
Q Consensus        70 ---~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~  132 (455)
                         ....|..|+||||+|+..|+.+++++|++.++++ +.++              ..|.||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence               2333558999999999999999999999999998 6666              689999999999999999999999


Q ss_pred             h--cCccccccccCCCcHHHHHHHcCC---------HHHHHHHHHHhhhhcc-cccccccCCCCCcHHHHHHhcCChHHH
Q 012836          133 A--YGECAEDVSVQRETVLHLAVKNNQ---------FEVVRALVDWIRDVKK-ENILNMKDKQGNTALHLATWKRECQVV  200 (455)
Q Consensus       133 ~--~~~~~~~~~~~g~t~Lh~A~~~~~---------~~~v~~Ll~~g~~~~~-~~~~~~~d~~G~T~Lh~A~~~~~~~iv  200 (455)
                      .  .+.+++..|..|+||||+|+..++         .+++++|+++|+++.. ..+.+.+|.+|+||||+|+..|+.+++
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence            4  489999999999999999999888         7999999999998732 223467999999999999999999999


Q ss_pred             HHHHhcCC
Q 012836          201 ELLLSHGA  208 (455)
Q Consensus       201 ~~Ll~~ga  208 (455)
                      ++|+++|+
T Consensus       242 ~~Ll~~g~  249 (260)
T 3jxi_A          242 QHIIRREI  249 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhCC
Confidence            99999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=2.1e-32  Score=257.13  Aligned_cols=195  Identities=22%  Similarity=0.245  Sum_probs=171.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHc----CCcch---hhhcCCCCcHHHHHHHc---CCHHHHHHHHhcCcccc------
Q 012836           41 ASAGNPLHVASAYGHVDFVKEIIRL----KPDFA---KEVNQDGFSPMHMASAN---GQIDVVRGLMKFDQKLC------  104 (455)
Q Consensus        41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~---~~~~~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~------  104 (455)
                      ..|.||||.|+..|+.++|+.|++.    +.++.   ...|..|+||||+|+..   |+.+++++|++.+++..      
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i   90 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV   90 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence            4599999999999999999999874    33321   13578999999999987   99999999999876531      


Q ss_pred             c----cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccccc--------------CCCcHHHHHHHcCCHHHHHHHHH
Q 012836          105 H----LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSV--------------QRETVLHLAVKNNQFEVVRALVD  166 (455)
Q Consensus       105 ~----~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~Lh~A~~~~~~~~v~~Ll~  166 (455)
                      +    .+|..|.||||+|+..|+.+++++|++. +.+++..+.              .|+||||+|+..|+.+++++|++
T Consensus        91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (273)
T 2pnn_A           91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ  169 (273)
T ss_dssp             TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            2    2567899999999999999999999998 888988886              79999999999999999999999


Q ss_pred             ---HhhhhcccccccccCCCCCcHHHHHHhcCC---------hHHHHHHHhcCCCCCCCcccc-------ccCCCCCCHH
Q 012836          167 ---WIRDVKKENILNMKDKQGNTALHLATWKRE---------CQVVELLLSHGANASGGLEVN-------ATNHSGLTAL  227 (455)
Q Consensus       167 ---~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~---------~~iv~~Ll~~ga~~~~~v~~~-------~~n~~g~t~l  227 (455)
                         .|+++      +.+|.+|+||||+|+..++         .+++++|+++|+      +++       .+|..|.|||
T Consensus       170 ~~~~gad~------~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga------~~n~~~~~~~~~d~~g~TpL  237 (273)
T 2pnn_A          170 NSWQPADI------SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA------KLHPTLKLEEITNRKGLTPL  237 (273)
T ss_dssp             CSSCCCCT------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH------HHCTTCCGGGCCCTTSCCHH
T ss_pred             cccCCCCc------eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh------hcccccccccccCCCCCCHH
Confidence               88887      8999999999999999988         799999999998      564       5899999999


Q ss_pred             HHHhhCCCCcCchhHHHHHHHhccc
Q 012836          228 DVLLSFPSEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       228 ~~a~~~~~~~~~~~i~~~L~~~ga~  252 (455)
                      |+|+.    .++.+++++|+++||.
T Consensus       238 ~~A~~----~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          238 ALAAS----SGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHTC
T ss_pred             HHHHH----hChHHHHHHHHHCCCC
Confidence            99975    4889999999999993

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=2.8e-31  Score=243.58  Aligned_cols=197  Identities=21%  Similarity=0.296  Sum_probs=178.6

Q ss_pred             cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836            2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM   81 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   81 (455)
                      +..+..|.|+||.|+..|+.++++.|++.++....... ..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|||
T Consensus        36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l  113 (240)
T 3eu9_A           36 RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG-DLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCI  113 (240)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT-TTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcC-CcCCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHH
Confidence            34567899999999999999999999999887654443 3489999999999999999999999887 567789999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC-HHHHHHHHHhcCcccccccc-CCCcHHHHHHHcCCHH
Q 012836           82 HMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR-VDVVSEMLSAYGECAEDVSV-QRETVLHLAVKNNQFE  159 (455)
Q Consensus        82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~  159 (455)
                      |+|+..|+.+++++|++.+.++ +.++..|.||||+|+..++ .++++.|++. +.+++..+. .|.||||+|+..|+.+
T Consensus       114 ~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~  191 (240)
T 3eu9_A          114 HLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTT  191 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHT-TCCTTCCCTTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhc-CCCcchhhccCCCcHHHHHHHcCCHH
Confidence            9999999999999999999988 8889999999999998777 7888888876 888888886 8999999999999999


Q ss_pred             HHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       160 ~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      ++++|+++|+++      +.+|..|+||||+|+..|+.+++++|++.++
T Consensus       192 ~v~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          192 VISLLLEAGANV------DAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             HHHHHHHHTCCT------TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            999999999887      8999999999999999999999999999987

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=2.1e-31  Score=231.57  Aligned_cols=157  Identities=33%  Similarity=0.458  Sum_probs=147.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCH
Q 012836           79 SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF  158 (455)
Q Consensus        79 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~  158 (455)
                      ++|+.||+.|+.++|+.|++.|+++ +.+|.+|+||||+|+..++.++++.|++. +.+++..|.+|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCH
Confidence            4799999999999999999999998 88999999999999999999999999997 899999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcC
Q 012836          159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG  238 (455)
Q Consensus       159 ~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~  238 (455)
                      +++++|+++|+++      |.+|.+|+||||+|+..|+.+++++|+++|+      +++.+|.+|+|||++|+.    .+
T Consensus        84 ~~v~~Ll~~gadv------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~G~TpL~~A~~----~g  147 (169)
T 4gpm_A           84 EVVKLLISKGADV------NAKDSDGRTPLHHAAENGHKEVVKLLISKGA------DVNTSDSDGRTPLDLARE----HG  147 (169)
T ss_dssp             HHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----TT
T ss_pred             HHHHHHHHCcCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCCHHHHHHH----cC
Confidence            9999999999987      8999999999999999999999999999999      899999999999999975    47


Q ss_pred             chhHHHHHHHhcccc
Q 012836          239 DREIEEIFWSAGAMR  253 (455)
Q Consensus       239 ~~~i~~~L~~~ga~~  253 (455)
                      +.+++++|+++||.-
T Consensus       148 ~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          148 NEEVVKLLEKQGGWL  162 (169)
T ss_dssp             CHHHHHHHHTC----
T ss_pred             CHHHHHHHHHCCCCc
Confidence            899999999999953

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=5.5e-32  Score=252.23  Aligned_cols=196  Identities=21%  Similarity=0.187  Sum_probs=170.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHH----cCCcchhhh----cCCCCcHHHHHH---HcCCHHHHHHHHhcCccc-------
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIR----LKPDFAKEV----NQDGFSPMHMAS---ANGQIDVVRGLMKFDQKL-------  103 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~----~~~g~tpLh~Aa---~~g~~~iv~~Ll~~~~~~-------  103 (455)
                      .++|+||.|+..|+.+.++.|++    .+.++ +..    |..|.||||+|+   ..|+.+++++|++.+++.       
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            47899999999999996555555    77664 333    377999999999   779999999999987542       


Q ss_pred             ---cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc--------------cCCCcHHHHHHHcCCHHHHHHHHH
Q 012836          104 ---CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS--------------VQRETVLHLAVKNNQFEVVRALVD  166 (455)
Q Consensus       104 ---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~Lh~A~~~~~~~~v~~Ll~  166 (455)
                         ....|..|.||||+|+..|+.+++++|++. +.+++..+              ..|+||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence               134455899999999999999999999997 88899888              589999999999999999999999


Q ss_pred             ---HhhhhcccccccccCCCCCcHHHHHHhcCC---------hHHHHHHHhcCCCCCCCccc-------cccCCCCCCHH
Q 012836          167 ---WIRDVKKENILNMKDKQGNTALHLATWKRE---------CQVVELLLSHGANASGGLEV-------NATNHSGLTAL  227 (455)
Q Consensus       167 ---~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~---------~~iv~~Ll~~ga~~~~~v~~-------~~~n~~g~t~l  227 (455)
                         .|+++      +.+|..|+||||+|+..++         .+++++|+++|+      ++       +.+|..|.|||
T Consensus       162 ~~~~ga~~------~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga------~~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          162 NGHKQADL------RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA------KLFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             CSSCCCCT------TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH------HHCTTCCGGGCCCTTSCCHH
T ss_pred             ccccCCCC------cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc------ccccccchhhcccCCCCCHH
Confidence               88887      8999999999999998887         799999999998      56       78999999999


Q ss_pred             HHHhhCCCCcCchhHHHHHHHhcccccc
Q 012836          228 DVLLSFPSEAGDREIEEIFWSAGAMRMR  255 (455)
Q Consensus       228 ~~a~~~~~~~~~~~i~~~L~~~ga~~~~  255 (455)
                      |+|+.    .++.+++++|+++|+.+..
T Consensus       230 ~~A~~----~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          230 MMAAK----TGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHH----cCCHHHHHHHHHhCCCccc
Confidence            99975    4899999999999997653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.7e-31  Score=231.68  Aligned_cols=170  Identities=25%  Similarity=0.327  Sum_probs=140.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG  122 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  122 (455)
                      +.||||.|+..|+.++++.|++.++...+..|..|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            4678899999999999999988888767778888899999999999999999999888887 778888889999999999


Q ss_pred             CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHH
Q 012836          123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL  202 (455)
Q Consensus       123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~  202 (455)
                      +.+++++|+++ +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..++.+++++
T Consensus        81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~~~~  153 (172)
T 3v30_A           81 YTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL------TTEADSGYTPMDLAVALGYRKVQQV  153 (172)
T ss_dssp             CHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999888877 7888888888899999999999999999999888776      7888889999999999999999999


Q ss_pred             HHhcCCCCCCCccccccCCCCCCH
Q 012836          203 LLSHGANASGGLEVNATNHSGLTA  226 (455)
Q Consensus       203 Ll~~ga~~~~~v~~~~~n~~g~t~  226 (455)
                      |+++|+      ++...|..|.||
T Consensus       154 L~~~~~------~~~~~~~~~~~p  171 (172)
T 3v30_A          154 IENHIL------KLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHH------HHSCC-------
T ss_pred             HHHHHH------HHhcccCCCCCC
Confidence            998887      677777777776

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-31  Score=258.82  Aligned_cols=200  Identities=18%  Similarity=0.170  Sum_probs=162.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCC-
Q 012836           11 RLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQ-   89 (455)
Q Consensus        11 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~-   89 (455)
                      .+|.|+..+..++++.|++.+.++... .+..|.||||+|+..|+.++|++|++++++ ++.+|..|+||||+|+..|+ 
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~  177 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNN  177 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhccc
Confidence            357778778888888888877766542 234599999999999999999999999988 57889999999999999999 


Q ss_pred             --HHHHHHHHhcCccccccCCCCCCCHHHHHHH----hCCHHHHHHHHHhc-------------------CccccccccC
Q 012836           90 --IDVVRGLMKFDQKLCHLQGPERKTPLHFAAI----KGRVDVVSEMLSAY-------------------GECAEDVSVQ  144 (455)
Q Consensus        90 --~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~g~~~~v~~Ll~~~-------------------~~~~~~~~~~  144 (455)
                        .++++.|++.+....+.+|..|+||||+|+.    .|+.++++.|++..                   +.+++..+..
T Consensus       178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~  257 (327)
T 1sw6_A          178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE  257 (327)
T ss_dssp             HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred             ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc
Confidence              7888888887744348899999999999999    89999999999864                   7788889999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCC
Q 012836          145 RETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL  224 (455)
Q Consensus       145 g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~  224 (455)
                      |+||||.|+.      +++|+++  +      +|.+|.+|+||||+|+..|+.+++++|+++|+      +++.+|..|+
T Consensus       258 g~t~L~~a~~------~~~Ll~~--~------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga------d~~~~d~~G~  317 (327)
T 1sw6_A          258 RKDSILENLD------LKWIIAN--M------LNAQDSNGDTCLNIAARLGNISIVDALLDYGA------DPFIANKSGL  317 (327)
T ss_dssp             --CHHHHHCS------HHHHHHH--T------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC------CTTCCCTTSC
T ss_pred             CCChhHHHHH------HHHHHHh--C------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCC
Confidence            9999999986      8889886  3      38899999999999999999999999999999      8999999999


Q ss_pred             CHHHHHhh
Q 012836          225 TALDVLLS  232 (455)
Q Consensus       225 t~l~~a~~  232 (455)
                      ||||+|+.
T Consensus       318 TpL~~A~~  325 (327)
T 1sw6_A          318 RPVDFGAG  325 (327)
T ss_dssp             CGGGGTCC
T ss_pred             CHHHHHHh
Confidence            99999953

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3.6e-31  Score=249.24  Aligned_cols=192  Identities=19%  Similarity=0.231  Sum_probs=173.8

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH--
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS--   85 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa--   85 (455)
                      ..+++|.|+..|+.+.++.+++..........+..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            346678899999999999998876553333444569999999999999999999999998557888999999999999  


Q ss_pred             ---HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHH
Q 012836           86 ---ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR  162 (455)
Q Consensus        86 ---~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~  162 (455)
                         ..++.+++++|++.+... ...|..|.||||+|+..|+.+++++|++. |.+++..|.+|+||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               678999999999999776 77888999999999999999999999998 9999999999999999999999999999


Q ss_pred             HHHH-HhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcC
Q 012836          163 ALVD-WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG  207 (455)
Q Consensus       163 ~Ll~-~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  207 (455)
                      +|++ .|+++      +.+|.+|+||||+|+..|+.+++++|++++
T Consensus       234 ~Ll~~~gad~------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          234 LLLAVPSCDI------SLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHTSTTCCT------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCCCCC------cCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999 78887      899999999999999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=244.28  Aligned_cols=192  Identities=24%  Similarity=0.339  Sum_probs=175.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCc-chhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH--
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPD-FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA--  119 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~--  119 (455)
                      ..+++|.|+..|+.+.++.+++...+ .++..|.+|+||||+|+..|+.+++++|++.++...+..|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            45778999999999999999887543 356779999999999999999999999999998444889999999999999  


Q ss_pred             ---HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCC
Q 012836          120 ---IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRE  196 (455)
Q Consensus       120 ---~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~  196 (455)
                         ..++.++++.|++. +...+..+..|+||||+|+..|+.+++++|+++|+++      |.+|.+|+||||+|+..|+
T Consensus       156 ~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~------n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV------NVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             CCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTC
T ss_pred             HhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHCCC
Confidence               77899999999998 7888888999999999999999999999999999987      8999999999999999999


Q ss_pred             hHHHHHHHh-cCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcc
Q 012836          197 CQVVELLLS-HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       197 ~~iv~~Ll~-~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga  251 (455)
                      .+++++|++ .|+      +++.+|..|.||||+|+.    .++.+++++|++++.
T Consensus       229 ~~iv~~Ll~~~ga------d~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          229 KEIAGLLLAVPSC------DISLTDRDGSTALMVALD----AGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHHHTSTTC------CTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCCC------CCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhccC
Confidence            999999999 788      899999999999999974    488999999998764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=6.1e-30  Score=227.26  Aligned_cols=159  Identities=21%  Similarity=0.269  Sum_probs=150.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH
Q 012836           40 FASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA  119 (455)
Q Consensus        40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  119 (455)
                      +..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence            34599999999999999999999999887 5677899999999999999999999999999988 888999999999999


Q ss_pred             HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHH
Q 012836          120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV  199 (455)
Q Consensus       120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~i  199 (455)
                      ..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|.||||+|+..|+.++
T Consensus       110 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          110 IFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI------SARDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             HHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT------TCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCcCCCCCCHHHHHHHhCcHHH
Confidence            99999999999997 8999999999999999999999999999999999887      8999999999999999999999


Q ss_pred             HHHHHhcC
Q 012836          200 VELLLSHG  207 (455)
Q Consensus       200 v~~Ll~~g  207 (455)
                      +++|+++|
T Consensus       183 v~~Ll~~~  190 (192)
T 2rfm_A          183 IKIFTEVR  190 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.5e-29  Score=219.47  Aligned_cols=158  Identities=25%  Similarity=0.342  Sum_probs=140.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .|.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence            378899999999999999999988866 5777888999999999999999999999988887 77888899999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      |+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.++++
T Consensus        80 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           80 GYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP------TIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             TCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCcHHHHH
Confidence            999999999987 8888888889999999999999999999999988876      788899999999999999999999


Q ss_pred             HHHhcCC
Q 012836          202 LLLSHGA  208 (455)
Q Consensus       202 ~Ll~~ga  208 (455)
                      +|++++.
T Consensus       153 ~L~~~~~  159 (167)
T 3v31_A          153 VIESHLL  159 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=9.2e-30  Score=219.48  Aligned_cols=158  Identities=23%  Similarity=0.299  Sum_probs=140.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      ...||||.|+..|+.+++++|++.+.+ .+..|..|+||||+|+. |+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            367899999999999999999998877 46778889999999988 9999999999998887 77888999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      |+.+++++|++. +.+++..|.+|+||||+|+..|+.+++++|+++|++.     ++.+|..|+||||+|+..|+.++++
T Consensus        81 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~  154 (162)
T 1ihb_A           81 GFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN-----VGHRNHKGDTACDLARLYGRNEVVS  154 (162)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC-----TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC-----CCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            999999999987 7888899999999999999999999999999988763     3788999999999999999999999


Q ss_pred             HHHhcCC
Q 012836          202 LLLSHGA  208 (455)
Q Consensus       202 ~Ll~~ga  208 (455)
                      +|+++|+
T Consensus       155 ~Ll~~GA  161 (162)
T 1ihb_A          155 LMQANGA  161 (162)
T ss_dssp             HHHHTC-
T ss_pred             HHHHhCC
Confidence            9999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-30  Score=251.36  Aligned_cols=240  Identities=14%  Similarity=0.094  Sum_probs=182.3

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCC---------------CCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTP---------------AFASAGNPLHVASAYGHVDFVKEIIRLKP   67 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---------------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~   67 (455)
                      ..+..|.++++     |+.++++.|++++.+.....               ......+.+|.|+..+..++++.|++.+.
T Consensus        47 ~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~  121 (327)
T 1sw6_A           47 KALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL  121 (327)
T ss_dssp             ECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCC
T ss_pred             cCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCC
Confidence            34566777766     99999999998864322100               00012234688888888899999999988


Q ss_pred             cchhh-hcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC---HHHHHHHHHhcCcccccccc
Q 012836           68 DFAKE-VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR---VDVVSEMLSAYGECAEDVSV  143 (455)
Q Consensus        68 ~~~~~-~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~  143 (455)
                      ++ +. .|..|+||||+||..|+.++|++|+++++++ +.+|.+|+||||+|+..|+   .++++.|++....+++..|.
T Consensus       122 dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~  199 (327)
T 1sw6_A          122 NL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS  199 (327)
T ss_dssp             CS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred             Cc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC
Confidence            74 55 7999999999999999999999999999998 8899999999999999998   78888999886688999999


Q ss_pred             CCCcHHHHHHH----cCCHHHHHHHHHHhhhhcc--------------cccccccCCCCCcHHHHHHhcCChHHHHHHHh
Q 012836          144 QRETVLHLAVK----NNQFEVVRALVDWIRDVKK--------------ENILNMKDKQGNTALHLATWKRECQVVELLLS  205 (455)
Q Consensus       144 ~g~t~Lh~A~~----~~~~~~v~~Ll~~g~~~~~--------------~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~  205 (455)
                      .|+||||+|+.    .|+.+++++|++.+.....              ...++.+|..|.||||.|+.      +++|++
T Consensus       200 ~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~  273 (327)
T 1sw6_A          200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIA  273 (327)
T ss_dssp             TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHH
T ss_pred             CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHH
Confidence            99999999999    8999999999998542210              23358899999999999985      899998


Q ss_pred             cCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccc
Q 012836          206 HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNC  276 (455)
Q Consensus       206 ~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
                      +        +++.+|..|+||||+|+.    .++.+++++|+++|+..         ..++..|.+|+...
T Consensus       274 ~--------~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~---------~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          274 N--------MLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADP---------FIANKSGLRPVDFG  323 (327)
T ss_dssp             H--------TTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCT---------TCCCTTSCCGGGGT
T ss_pred             h--------CCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC---------cccCCCCCCHHHHH
Confidence            7        478899999999999975    47899999999999954         34566777776543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.5e-29  Score=219.14  Aligned_cols=169  Identities=20%  Similarity=0.259  Sum_probs=149.9

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcC
Q 012836            9 DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANG   88 (455)
Q Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g   88 (455)
                      .++||.|+..|+.+.++.|+++++......+ ..|.||||+|+..|+.+++++|++++.+ ++..|..|.||||+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG   80 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence            4789999999999999999999887554443 3599999999999999999999999987 5777999999999999999


Q ss_pred             CHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHh
Q 012836           89 QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWI  168 (455)
Q Consensus        89 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g  168 (455)
                      +.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|++++
T Consensus        81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            999999999999998 88999999999999999999999999997 8999999999999999999999999999999999


Q ss_pred             hhhcccccccccCCCCCcH
Q 012836          169 RDVKKENILNMKDKQGNTA  187 (455)
Q Consensus       169 ~~~~~~~~~~~~d~~G~T~  187 (455)
                      ++.      ..++..|.||
T Consensus       159 ~~~------~~~~~~~~~p  171 (172)
T 3v30_A          159 LKL------FQSNLVPADP  171 (172)
T ss_dssp             HHH------SCC-------
T ss_pred             HHH------hcccCCCCCC
Confidence            987      6777777776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.7e-29  Score=217.55  Aligned_cols=157  Identities=27%  Similarity=0.409  Sum_probs=146.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .+.|+||.|+..|+.+++++|++++.+ .+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            377999999999999999999999887 5777899999999999999999999999999887 78899999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      |+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.++++
T Consensus        91 ~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~  163 (169)
T 2y1l_E           91 GHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV------NAQDKFGKTAFDISIDNGNEDLAE  163 (169)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHhCCHHHHH
Confidence            999999999997 8889999999999999999999999999999999887      889999999999999999999999


Q ss_pred             HHHhcC
Q 012836          202 LLLSHG  207 (455)
Q Consensus       202 ~Ll~~g  207 (455)
                      +|++.|
T Consensus       164 ~L~~~G  169 (169)
T 2y1l_E          164 ILQKLN  169 (169)
T ss_dssp             HHHTC-
T ss_pred             HHHHcC
Confidence            999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.6e-29  Score=224.61  Aligned_cols=163  Identities=23%  Similarity=0.268  Sum_probs=153.7

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHH
Q 012836           70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVL  149 (455)
Q Consensus        70 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  149 (455)
                      .+.+|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+|||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Confidence            4567889999999999999999999999999887 78899999999999999999999999998 888999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHH
Q 012836          150 HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV  229 (455)
Q Consensus       150 h~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~  229 (455)
                      |+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.||+|+
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~  173 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANV------NDRNLEGETPLIVASKYGRSEIVKKLLELGA------DISARDLTGLTAEAS  173 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCBCTTSCBHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHH
Confidence            9999999999999999999887      8999999999999999999999999999998      899999999999999


Q ss_pred             HhhCCCCcCchhHHHHHHHhc
Q 012836          230 LLSFPSEAGDREIEEIFWSAG  250 (455)
Q Consensus       230 a~~~~~~~~~~~i~~~L~~~g  250 (455)
                      |+.    .++.+++++|+++|
T Consensus       174 A~~----~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          174 ARI----FGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHH----TTCHHHHHHHHHHH
T ss_pred             HHH----hCcHHHHHHHHhcc
Confidence            975    47899999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=7.5e-29  Score=215.03  Aligned_cols=162  Identities=25%  Similarity=0.349  Sum_probs=152.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836           76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN  155 (455)
Q Consensus        76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  155 (455)
                      .|.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..+..|+||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence            5889999999999999999999999886 88999999999999999999999999998 889999999999999999999


Q ss_pred             CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCC
Q 012836          156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPS  235 (455)
Q Consensus       156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~  235 (455)
                      |+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.||+|+|+.   
T Consensus        80 ~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~---  144 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDV------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGA------DPTIETDSGYNSMDLAVA---  144 (167)
T ss_dssp             TCHHHHHHHHHHTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH---
T ss_pred             CCHHHHHHHHHCCCCC------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHH---
Confidence            9999999999999887      8899999999999999999999999999998      889999999999999974   


Q ss_pred             CcCchhHHHHHHHhcccccc
Q 012836          236 EAGDREIEEIFWSAGAMRMR  255 (455)
Q Consensus       236 ~~~~~~i~~~L~~~ga~~~~  255 (455)
                       .++.+++++|+++++....
T Consensus       145 -~~~~~~~~~L~~~~~~~~~  163 (167)
T 3v31_A          145 -LGYRSVQQVIESHLLKLLQ  163 (167)
T ss_dssp             -HTCHHHHHHHHHHHHHHCS
T ss_pred             -cCcHHHHHHHHHHHHHHHH
Confidence             4789999999999886543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.5e-29  Score=218.95  Aligned_cols=158  Identities=23%  Similarity=0.361  Sum_probs=132.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .+.||||.|+..|+.++++.|++.++......+..|+||||+|+..|+.+++++|++.+.++ +.+|.+|.||||+|+..
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence            47788888888888888888888766556667778888888888888888888888888887 77888888888888888


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      |+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|.+|+||||+|+. ++.++++
T Consensus        86 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~a~~-~~~~i~~  157 (165)
T 3twr_A           86 GHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP------TKKNRDGNTPLDLVKD-GDTDIQD  157 (165)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred             CcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------cccCCCCCChhHhHhc-CChHHHH
Confidence            888888888886 7888888888899999999999999999999888876      8888999999999766 8889999


Q ss_pred             HHHhcCC
Q 012836          202 LLLSHGA  208 (455)
Q Consensus       202 ~Ll~~ga  208 (455)
                      +|+++|+
T Consensus       158 ~L~~~gA  164 (165)
T 3twr_A          158 LLRGDAA  164 (165)
T ss_dssp             HHHTC--
T ss_pred             HHhhccc
Confidence            9988875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.1e-29  Score=220.15  Aligned_cols=168  Identities=22%  Similarity=0.221  Sum_probs=151.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .+.++||.|+..|+.+++++|++.++...+..|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            36789999999999999999999977767888999999999999999999999999999888 78899999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      |+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|.||||+|+..++.++++
T Consensus        83 ~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~~~  155 (179)
T 3f6q_A           83 GHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV------SICNKYGEMPVDKAKAPLRELLRE  155 (179)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS------SBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc------chhccCCCCcHHHHHHHHHHHHHH
Confidence            999999999987 8899999999999999999999999999999999887      889999999999999999999999


Q ss_pred             HHHhcCCCCCCCccccccCCCC
Q 012836          202 LLLSHGANASGGLEVNATNHSG  223 (455)
Q Consensus       202 ~Ll~~ga~~~~~v~~~~~n~~g  223 (455)
                      +|+++|+      +++..+.++
T Consensus       156 ~L~~~g~------~~~~~~~~~  171 (179)
T 3f6q_A          156 RAEKMGQ------NLNRIPYKD  171 (179)
T ss_dssp             HHHHTTC------CCSCBCCCC
T ss_pred             HHHHhhc------CcccCCccc
Confidence            9999998      566555443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.1e-28  Score=212.64  Aligned_cols=161  Identities=21%  Similarity=0.303  Sum_probs=143.7

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMA   84 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A   84 (455)
                      .+...++||.|+..|+.+.++.|++.+.+....  +..|.||||+|+. |+.+++++|++.+.+ ++..|..|.||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDA   77 (162)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             cchHhhHHHHHHHcCCHHHHHHHHhCCCCcccc--CccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHH
Confidence            456789999999999999999999988765433  3359999999999 999999999999887 577799999999999


Q ss_pred             HHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHH
Q 012836           85 SANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL  164 (455)
Q Consensus        85 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  164 (455)
                      +..|+.+++++|++.+.++ +.+|.+|.||||+|+..|+.+++++|+++....++..|..|+||||+|+..|+.+++++|
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  156 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  156 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999988 889999999999999999999999999985545789999999999999999999999999


Q ss_pred             HHHhhh
Q 012836          165 VDWIRD  170 (455)
Q Consensus       165 l~~g~~  170 (455)
                      +++|++
T Consensus       157 l~~GAd  162 (162)
T 1ihb_A          157 QANGAG  162 (162)
T ss_dssp             HHTC--
T ss_pred             HHhCCC
Confidence            998864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.3e-28  Score=208.90  Aligned_cols=150  Identities=27%  Similarity=0.376  Sum_probs=121.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC
Q 012836           44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR  123 (455)
Q Consensus        44 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  123 (455)
                      .|+||.|+..|+.+++++|++.+++. . .+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence            57788888888888888888887653 2 4777888888888888888888888887776 6777788888888888888


Q ss_pred             HHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHH
Q 012836          124 VDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL  203 (455)
Q Consensus       124 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  203 (455)
                      .+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            8888888876 7778888888888888888888888888888887776      77888888888888888888888876

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2e-28  Score=212.96  Aligned_cols=161  Identities=32%  Similarity=0.430  Sum_probs=148.0

Q ss_pred             hhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHH
Q 012836           72 EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHL  151 (455)
Q Consensus        72 ~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  151 (455)
                      .....+.+|||.|+..|+.+++++|++.+.++ +.+|.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHH
Confidence            34556789999999999999999999999988 78899999999999999999999999997 88899999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       152 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      |+..|+.+++++|+++|+++      +.+|.+|+||||+|+..++.+++++|+++|+      +++.+|..|.||+|+|+
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~  154 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADV------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGA------DVNAQDKFGKTAFDISI  154 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHH
Confidence            99999999999999999887      8899999999999999999999999999998      88999999999999997


Q ss_pred             hCCCCcCchhHHHHHHHhc
Q 012836          232 SFPSEAGDREIEEIFWSAG  250 (455)
Q Consensus       232 ~~~~~~~~~~i~~~L~~~g  250 (455)
                      .    .++.+++++|++.|
T Consensus       155 ~----~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          155 D----NGNEDLAEILQKLN  169 (169)
T ss_dssp             H----TTCHHHHHHHHTC-
T ss_pred             H----hCCHHHHHHHHHcC
Confidence            5    47899999999876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=8.2e-29  Score=214.32  Aligned_cols=161  Identities=30%  Similarity=0.382  Sum_probs=147.2

Q ss_pred             hcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHH
Q 012836           73 VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA  152 (455)
Q Consensus        73 ~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  152 (455)
                      .|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHH
Confidence            3667899999999999999999999977665577888899999999999999999999998 889999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836          153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS  232 (455)
Q Consensus       153 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~  232 (455)
                      +..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.||+|+|. 
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~a~-  149 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVV------NVADLWKFTPLHEAAAKGKYEICKLLLQHGA------DPTKKNRDGNTPLDLVK-  149 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCTGGGSC-
T ss_pred             HHcCcHHHHHHHHhCCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCCChhHhHh-
Confidence            9999999999999999887      8899999999999999999999999999998      89999999999999984 


Q ss_pred             CCCCcCchhHHHHHHHhcc
Q 012836          233 FPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       233 ~~~~~~~~~i~~~L~~~ga  251 (455)
                          .++.+++++|++.||
T Consensus       150 ----~~~~~i~~~L~~~gA  164 (165)
T 3twr_A          150 ----DGDTDIQDLLRGDAA  164 (165)
T ss_dssp             ----TTCHHHHHHHHTC--
T ss_pred             ----cCChHHHHHHhhccc
Confidence                267899999999887

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.7e-28  Score=210.22  Aligned_cols=154  Identities=25%  Similarity=0.320  Sum_probs=123.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG  122 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  122 (455)
                      +.||||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|++.++++ +.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            45788888888888888888887433456677788888888 8888888888888888777 777888888888888888


Q ss_pred             CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHH
Q 012836          123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL  202 (455)
Q Consensus       123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~  202 (455)
                      +.+++++|++. |.+++..|..|+||||+|+..|+.+++++|++. +++      +.+|.+|+||||+|+..|+.+++++
T Consensus        80 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~------~~~~~~g~t~l~~A~~~~~~~~v~~  151 (156)
T 1bd8_A           80 FLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL------HRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             CHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT------TCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             cHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC------CCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            88888888876 777888888888888888888888888888876 554      7788888888888888888888888


Q ss_pred             HHhc
Q 012836          203 LLSH  206 (455)
Q Consensus       203 Ll~~  206 (455)
                      |+++
T Consensus       152 Ll~~  155 (156)
T 1bd8_A          152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=4e-30  Score=235.13  Aligned_cols=201  Identities=15%  Similarity=0.126  Sum_probs=165.2

Q ss_pred             HHHHHhcCCcccCCC-CCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCcc
Q 012836           24 LQQLFVENPLILHTP-AFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK  102 (455)
Q Consensus        24 v~~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~  102 (455)
                      ++.|++++....... ....+.||||.|+..|+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++.+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            456777766544322 233488999999999999999999999987 577899999999999999999999999999999


Q ss_pred             ccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc-cCCCcHHHHH--HHcCCHHHHHHHHHHhhhhcccccccc
Q 012836          103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS-VQRETVLHLA--VKNNQFEVVRALVDWIRDVKKENILNM  179 (455)
Q Consensus       103 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~~~~~  179 (455)
                      + +.+|..|.||||+|+..|+.+++++|++. +.+++..+ .+|+||||+|  +..|+.+++++|+++|+++      +.
T Consensus        80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~------~~  151 (229)
T 2vge_A           80 V-NSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM------GL  151 (229)
T ss_dssp             T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT------TT
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc------cc
Confidence            8 88999999999999999999999999987 88888886 6999999999  9999999999999999997      88


Q ss_pred             cCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHH
Q 012836          180 KDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEE  244 (455)
Q Consensus       180 ~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~  244 (455)
                      +|..|.||+|.++....   .++|++.|++    ++++.+|..|+||||+|+..    ++.++++
T Consensus       152 ~~~~~~~~l~~~~~~~~---~~~ll~~ga~----~~~~~~d~~G~TpL~~A~~~----g~~~~v~  205 (229)
T 2vge_A          152 MNSGAVYALWDYSAEFG---DELSFREGES----VTVLRRDGPEETDWWWAALH----GQEGYVP  205 (229)
T ss_dssp             SGGGEEEESSCBCCSST---TBCCBCTTCE----EEEEESSCTTCSSEEEEEET----TEEEEEE
T ss_pred             ccCCchHHHHHHhhccc---cccCcccccc----ccccccCCCcccHHHHHHHc----CCcceee
Confidence            89999999997655543   3577888872    35889999999999999643    5555443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5.1e-28  Score=212.39  Aligned_cols=163  Identities=23%  Similarity=0.278  Sum_probs=149.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      .++.+|||.|+..|+.+++++|++.+....+.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            45789999999999999999999997665688999999999999999999999999998 89999999999999999999


Q ss_pred             cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCC
Q 012836          155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFP  234 (455)
Q Consensus       155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~  234 (455)
                      .|+.+++++|+++|+++      +.+|..|+||||+|+..++.+++++|+++|+      +++.+|..|.||+++|.   
T Consensus        82 ~~~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~---  146 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADI------NAVNEHGNVPLHYACFWGQDQVAEDLVANGA------LVSICNKYGEMPVDKAK---  146 (179)
T ss_dssp             TTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSSBCCTTSCCGGGGSC---
T ss_pred             cCCHHHHHHHHHcCCCC------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCC------CcchhccCCCCcHHHHH---
Confidence            99999999999999887      8999999999999999999999999999999      89999999999999995   


Q ss_pred             CCcCchhHHHHHHHhccccc
Q 012836          235 SEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       235 ~~~~~~~i~~~L~~~ga~~~  254 (455)
                       ..+..+++++|+++|+...
T Consensus       147 -~~~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          147 -APLRELLRERAEKMGQNLN  165 (179)
T ss_dssp             -HHHHHHHHHHHHHTTCCCS
T ss_pred             -HHHHHHHHHHHHHhhcCcc
Confidence             4578899999999999654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.6e-27  Score=203.65  Aligned_cols=151  Identities=21%  Similarity=0.355  Sum_probs=140.7

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      +.++|+.|+..|+.+.++.|++.++...   .+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            5689999999999999999999987654   234599999999999999999999999887 577799999999999999


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHH
Q 012836           88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL  164 (455)
Q Consensus        88 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  164 (455)
                      |+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999998 88999999999999999999999999998 899999999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.3e-27  Score=203.15  Aligned_cols=155  Identities=23%  Similarity=0.320  Sum_probs=140.0

Q ss_pred             ccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH
Q 012836            7 RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA   86 (455)
Q Consensus         7 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   86 (455)
                      ++.++||.|+..|+.+.++.|+++.+.... ..+..|.||||+ +..|+.+++++|++.+.+ .+..|..|.||||+|+.
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPD-ALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTT-CCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCcc-ccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence            357999999999999999999998322222 233459999999 999999999999999987 57789999999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 012836           87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD  166 (455)
Q Consensus        87 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  166 (455)
                      .|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++.  .+++..|.+|+||||+|+..|+.+++++|++
T Consensus        78 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999999999988 88999999999999999999999999987  7889999999999999999999999999986


Q ss_pred             H
Q 012836          167 W  167 (455)
Q Consensus       167 ~  167 (455)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.8e-28  Score=224.46  Aligned_cols=174  Identities=18%  Similarity=0.103  Sum_probs=125.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .|.||||.|+..|+.+.++.|++++.+. + .+..|.||||.|+..|+.+++++|++.++++ +.+|.+|.||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCc-c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            4899999999999999999999998774 3 3567899999999999999999999999987 88899999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCC-cHHHHH--HhcCChH
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN-TALHLA--TWKRECQ  198 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~-T~Lh~A--~~~~~~~  198 (455)
                      |+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|. ||||+|  +..|+.+
T Consensus        81 g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~~~~t~l~~a~~~~~g~~~  153 (239)
T 1ycs_B           81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV------FAMTYSDMQTAADKCEEMEEGYTQ  153 (239)
T ss_dssp             TCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred             CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------ceecCCCCcchHHHHHHhhhccHH
Confidence            999999999987 8899999999999999999999999999999999887      88887777 999999  7889999


Q ss_pred             HHHHHHhcCCCCCCCcccccc---------CCCCCCHHHHHh
Q 012836          199 VVELLLSHGANASGGLEVNAT---------NHSGLTALDVLL  231 (455)
Q Consensus       199 iv~~Ll~~ga~~~~~v~~~~~---------n~~g~t~l~~a~  231 (455)
                      ++++|+++|+      +++..         +..+.++++++.
T Consensus       154 ~~~~Ll~~~a------~~~~~~~~~~~al~d~~~~~~~eLa~  189 (239)
T 1ycs_B          154 CSQFLYGVQE------KMGIMNKGVIYALWDYEPQNDDELPM  189 (239)
T ss_dssp             HHHHHHHHHH------HTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred             HHHHHHHhhh------cccccccceEEEEeccCCCCCCcccc
Confidence            9999999988      44444         556777777664

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=7.8e-30  Score=233.23  Aligned_cols=190  Identities=15%  Similarity=0.077  Sum_probs=164.1

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      ..+..+.|+||.|+..|+.++++.|++.+.+....  +..|.||||+|+..|+.+++++|++.+.+ ++..|..|+||||
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh   92 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLH   92 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence            34567789999999999999999999998765443  34599999999999999999999999987 5778999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCC-CCCCCHHHHH--HHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHH
Q 012836           83 MASANGQIDVVRGLMKFDQKLCHLQG-PERKTPLHFA--AIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE  159 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~  159 (455)
                      +|+..|+.+++++|++.++++ +.++ .+|.||||+|  +..|+.+++++|++. +.+++..|..|.|+++.++..+.. 
T Consensus        93 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~~-  169 (229)
T 2vge_A           93 CAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAEFGD-  169 (229)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCSSTT-
T ss_pred             HHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHHHhhcccc-
Confidence            999999999999999999998 5554 6999999999  999999999999998 888999999999999976655433 


Q ss_pred             HHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836          160 VVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL  204 (455)
Q Consensus       160 ~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  204 (455)
                        ++|++.|+++    .++.+|.+|+||||+|+..|+.++++.++
T Consensus       170 --~~ll~~ga~~----~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          170 --ELSFREGESV----TVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             --BCCBCTTCEE----EEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             --ccCccccccc----cccccCCCcccHHHHHHHcCCcceeehhh
Confidence              5666766653    24789999999999999999999987543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=7e-28  Score=221.80  Aligned_cols=218  Identities=16%  Similarity=0.143  Sum_probs=149.8

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMAS   85 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa   85 (455)
                      ..|.|+||.|++.|+.+.++.|++++.+....   ..+.||||.|+..|+.++++.|++.+++ ++..|..|.||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            35899999999999999999999998776543   2489999999999999999999999986 6778999999999999


Q ss_pred             HcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCC-cHHHHH--HHcCCHHHHH
Q 012836           86 ANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE-TVLHLA--VKNNQFEVVR  162 (455)
Q Consensus        86 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A--~~~~~~~~v~  162 (455)
                      ..|+.+++++|+++++++ +.+|.+|+||||+|+..|+.+++++|+++ +.+++..+..|. ||||+|  +..|+.++++
T Consensus        79 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            999999999999999998 88999999999999999999999999998 889999888877 999999  7889999999


Q ss_pred             HHHHHhhhhccc---ccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          163 ALVDWIRDVKKE---NILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       163 ~Ll~~g~~~~~~---~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      +|+++|++....   ......|..+.++++++...|.  +++.|.+.+.+...-......+..|.+|.++..
T Consensus       157 ~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~  226 (239)
T 1ycs_B          157 FLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG  226 (239)
T ss_dssp             HHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred             HHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence            999999887321   1223348889999999988775  334444433310000112345566777776653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.9e-28  Score=239.42  Aligned_cols=156  Identities=16%  Similarity=0.169  Sum_probs=128.6

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHhcCCcccCC-CCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc--hhhhcCCCCcHHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFVENPLILHT-PAFASAGNPLHVASAYGHVDFVKEIIRLKPDF--AKEVNQDGFSPMH   82 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh   82 (455)
                      ..++|+||.|++.|+.++++.|++++...... ..+..|.||||+|+..|+.++|++|++++++.  .+..+.+ .||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            34569999999999999999999987622111 11223789999999999999999999999642  1111222 89999


Q ss_pred             HHHHcCCHHHHHHHHhcCcccccc--CCCCCCCHHHHHH-HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHH
Q 012836           83 MASANGQIDVVRGLMKFDQKLCHL--QGPERKTPLHFAA-IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFE  159 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~  159 (455)
                      +||..|+.++|++|++++++. ..  .|.+|.||||+|+ ..|+.+++++|++. |.       .|.||||+|+.+|+.+
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTTTT
T ss_pred             HHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCCHH
Confidence            999999999999999999987 44  6778999999999 99999999999985 42       3889999999999999


Q ss_pred             HHHHHHHHhhhh
Q 012836          160 VVRALVDWIRDV  171 (455)
Q Consensus       160 ~v~~Ll~~g~~~  171 (455)
                      ++++|+++|++.
T Consensus       240 vv~lL~~~ga~~  251 (376)
T 2aja_A          240 VNPFIARHVNRL  251 (376)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhcCccc
Confidence            999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=2.3e-26  Score=197.15  Aligned_cols=145  Identities=17%  Similarity=0.187  Sum_probs=111.4

Q ss_pred             hhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCc-HH
Q 012836           71 KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRET-VL  149 (455)
Q Consensus        71 ~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L  149 (455)
                      ...+..|.||||+|+..|+.+++++|++++.++ +.+|..|.||||+|+ .|+.+++++|++. +.+++..|..|+| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence            345677889999999999999999999888887 778888999999885 8899999999887 8888888999998 99


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHH
Q 012836          150 HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV  229 (455)
Q Consensus       150 h~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~  229 (455)
                      |+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++|+      +++.+|..|.||.+-
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARL------DVRDAWGRLPVDLAEELGHRDVARYLRAAAG------GTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHhCHHHHHHHHHHcCC------CCCccCcCcCccccc
Confidence            9999999999999999988887      8889999999999999999999999999998      788999999998764


Q ss_pred             H
Q 012836          230 L  230 (455)
Q Consensus       230 a  230 (455)
                      +
T Consensus       151 ~  151 (156)
T 1bi7_B          151 P  151 (156)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.1e-26  Score=205.10  Aligned_cols=156  Identities=12%  Similarity=0.018  Sum_probs=116.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCH----HHHHHHHhcCccccccCCCCCCCHHHHH
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQI----DVVRGLMKFDQKLCHLQGPERKTPLHFA  118 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~tpLh~A  118 (455)
                      +.++|+.|+..|+.+.++.+++.+.+.  ..+..|+||||+|+.+|+.    +++++|+++|+++ +.+|.+|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            456677888888887777777766542  2235678888888877764    4788888888777 77777888888888


Q ss_pred             HHhCC------HHHHHHHHHhcCccccccccCCC-cHHHHHHHcC-----CHHHHHHHHH-HhhhhcccccccccCCCCC
Q 012836          119 AIKGR------VDVVSEMLSAYGECAEDVSVQRE-TVLHLAVKNN-----QFEVVRALVD-WIRDVKKENILNMKDKQGN  185 (455)
Q Consensus       119 ~~~g~------~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~~-----~~~~v~~Ll~-~g~~~~~~~~~~~~d~~G~  185 (455)
                      +..|+      .++++.|+++ |++++.+|..|+ ||||+|+..+     ..+++++|++ +|+++      +.+|..|+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~------~~~d~~G~  155 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL------LIKDKWGL  155 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT------TCCCTTSC
T ss_pred             HHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC------cccCCCCC
Confidence            87776      5677777776 778888888888 8888888744     3457788887 77776      78888888


Q ss_pred             cHHHHHHhcCChHHHHHHHhcCC
Q 012836          186 TALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       186 T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      ||||+|+..++.+++++|.+...
T Consensus       156 TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          156 TALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             CHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888888888888888876644

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=8.3e-26  Score=188.97  Aligned_cols=130  Identities=15%  Similarity=0.180  Sum_probs=101.4

Q ss_pred             hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccC-CCcH
Q 012836           70 AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ-RETV  148 (455)
Q Consensus        70 ~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~  148 (455)
                      .+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+. |+.+++++|++. +.+++..|.. |+||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCH
Confidence            4556777778888888888888888888777776 6677778888888888 888888877776 6777777777 7888


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      ||+|+..|+.+++++|+++|+++      +.+|..|+||||+|+..++.+++++|+++|+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARL------DVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCC------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            88888888888888888777765      7777888888888888888888888887776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=3.3e-27  Score=230.69  Aligned_cols=176  Identities=15%  Similarity=0.124  Sum_probs=144.0

Q ss_pred             HHHHHHHH-cCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc--hhhhcCCCCcHHHHHHH
Q 012836           10 RRLIAAAL-TGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF--AKEVNQDGFSPMHMASA   86 (455)
Q Consensus        10 t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~Aa~   86 (455)
                      +.++.|.. .++.+.++.+++.+.         .+.||||.|+..|+.++|++|++.+...  ....+..|.||||+||.
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~---------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGI---------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTC---------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCC---------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence            35666665 477788888887653         2569999999999999999999998621  12345568899999999


Q ss_pred             cCCHHHHHHHHhcCccc--cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccc--cccCCCcHHHHHH-HcCCHHHH
Q 012836           87 NGQIDVVRGLMKFDQKL--CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAED--VSVQRETVLHLAV-KNNQFEVV  161 (455)
Q Consensus        87 ~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~v  161 (455)
                      .|+.++|++|++++++.  .+..+.+ .||||+|+..|+.+++++|+++ +.+++.  .|..|+||||+|+ .+|+.+++
T Consensus       138 ~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv  215 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVI  215 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence            99999999999999642  1223333 8999999999999999999998 777776  8889999999999 99999999


Q ss_pred             HHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCC
Q 012836          162 RALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN  209 (455)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~  209 (455)
                      ++|++.|++             |+||||+|+..|+.+++++|+++|++
T Consensus       216 ~~Ll~~ga~-------------~~taL~~Aa~~g~~evv~lL~~~ga~  250 (376)
T 2aja_A          216 NFLLDCPVM-------------LAYAEIHEFEYGEKYVNPFIARHVNR  250 (376)
T ss_dssp             HHHTTSHHH-------------HHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHHhCCCc-------------cchHHHHHHHCCCHHHHHHHHhcCcc
Confidence            999986532             68999999999999999999998763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=5.8e-26  Score=200.42  Aligned_cols=159  Identities=13%  Similarity=0.040  Sum_probs=140.2

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCH----HHHHHHHHcCCcchhhhcCCCCcHHHH
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHV----DFVKEIIRLKPDFAKEVNQDGFSPMHM   83 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpLh~   83 (455)
                      +.++|+.|++.|+.+.++.++..+.....   +..|.||||+|+..|+.    +++++|+++|++ ++.+|..|+||||+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~   81 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFP   81 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCHH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccccc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHH
Confidence            45679999999999999999998754322   12499999999999985    599999999988 67789999999999


Q ss_pred             HHHcCC------HHHHHHHHhcCccccccCCCCCC-CHHHHHHHhC-----CHHHHHHHHHhcCccccccccCCCcHHHH
Q 012836           84 ASANGQ------IDVVRGLMKFDQKLCHLQGPERK-TPLHFAAIKG-----RVDVVSEMLSAYGECAEDVSVQRETVLHL  151 (455)
Q Consensus        84 Aa~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  151 (455)
                      |+..|+      .+++++|+++|+++ +.+|..|. ||||+|+..+     +.++++.|++..|.+++..|..|+||||+
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF  160 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence            999987      68899999999998 88999999 9999999944     46799999984599999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhhhh
Q 012836          152 AVKNNQFEVVRALVDWIRDV  171 (455)
Q Consensus       152 A~~~~~~~~v~~Ll~~g~~~  171 (455)
                      |++.|+.+++++|.++..+.
T Consensus       161 A~~~~~~~~v~~L~~~~~~~  180 (186)
T 3t8k_A          161 VKRCQKPIALKMMEDYIKKY  180 (186)
T ss_dssp             HHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999987665

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.7e-25  Score=191.68  Aligned_cols=141  Identities=20%  Similarity=0.190  Sum_probs=116.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCC-HHHHHH
Q 012836           41 ASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKT-PLHFAA  119 (455)
Q Consensus        41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-pLh~A~  119 (455)
                      ..|.||||+|+..|+.+++++|++++.+ .+..|..|+||||+|+ .|+.+++++|++.++++ +.+|..|.| |||+|+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   86 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            4589999999999999999999999887 5777999999999985 99999999999999988 889999999 999999


Q ss_pred             HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHH
Q 012836          120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA  191 (455)
Q Consensus       120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A  191 (455)
                      ..|+.+++++|+++ +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|.||.+-+
T Consensus        87 ~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           87 REGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT------RGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------------
T ss_pred             HCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC------CccCcCcCcccccC
Confidence            99999999999998 8999999999999999999999999999999999987      88999999998744

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.3e-24  Score=181.65  Aligned_cols=126  Identities=22%  Similarity=0.291  Sum_probs=118.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCC-CCCHHHHHH
Q 012836           41 ASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPE-RKTPLHFAA  119 (455)
Q Consensus        41 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-g~tpLh~A~  119 (455)
                      ..|.||||.|+..|+.+++++|++++.+ ++..|..|+||||+|+. |+.+++++|++.++++ +.+|.. |.||||+|+
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~   86 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDAA   86 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHHH
Confidence            4599999999999999999999999877 57779999999999999 9999999999999998 788888 999999999


Q ss_pred             HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhh
Q 012836          120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRD  170 (455)
Q Consensus       120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  170 (455)
                      ..|+.+++++|++. +.+++..|..|+||||+|+..++.+++++|+++|++
T Consensus        87 ~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           87 REGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999987 889999999999999999999999999999998864

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=3.5e-24  Score=175.83  Aligned_cols=125  Identities=40%  Similarity=0.615  Sum_probs=91.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836           76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN  155 (455)
Q Consensus        76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  155 (455)
                      +|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence            3667777777777777777777776665 55666777777777777777777777765 666777777777777777777


Q ss_pred             CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      ++.+++++|+++|.++      +.+|..|+||||+|+..++.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADV------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             ChHHHHHHHHHcCCCC------cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            7777777777776665      6677777777777777777777777777776

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.7e-24  Score=180.94  Aligned_cols=125  Identities=28%  Similarity=0.305  Sum_probs=76.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           75 QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        75 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      ..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHH
Confidence            33555666666666666666666665555 55555666666666666666666666654 55556666666666666666


Q ss_pred             cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcC
Q 012836          155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG  207 (455)
Q Consensus       155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~g  207 (455)
                      .|+.+++++|+++|+++      +.+|.+|+||||+|+..++.+++++|++.|
T Consensus        90 ~~~~~~v~~Ll~~g~~~------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADV------NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCC------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666666666665554      556666666666666666666666666554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.3e-23  Score=172.46  Aligned_cols=125  Identities=32%  Similarity=0.546  Sum_probs=114.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG  122 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  122 (455)
                      |.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence            78999999999999999999999877 5667889999999999999999999999999887 778889999999999999


Q ss_pred             CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhh
Q 012836          123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRD  170 (455)
Q Consensus       123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~  170 (455)
                      +.+++++|+++ +.+++..|..|+||||+|+..++.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999987 888888999999999999999999999999998764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=7.9e-24  Score=176.87  Aligned_cols=124  Identities=22%  Similarity=0.346  Sum_probs=112.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHh
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~  121 (455)
                      .+.||||.|+..|+.+++++|++.+.+ .+..|..|+||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence            378999999999999999999999877 5777889999999999999999999999999887 77888999999999999


Q ss_pred             CCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHh
Q 012836          122 GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWI  168 (455)
Q Consensus       122 g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g  168 (455)
                      |+.+++++|++. +.+++..|.+|+||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999987 8888999999999999999999999999998754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=7.2e-24  Score=177.27  Aligned_cols=129  Identities=22%  Similarity=0.261  Sum_probs=102.8

Q ss_pred             hhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHH
Q 012836           72 EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHL  151 (455)
Q Consensus        72 ~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~  151 (455)
                      .+|..|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHH
Confidence            45777888888888888888888888888777 67788888888888888888888888876 77788888888888888


Q ss_pred             HHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       152 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      |+..|+.+++++|+++|+++      +.+|..|+||||+|+..+..+++++|.+.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASR------NAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT------TCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHcCCHHHHHHHHHcCCCC------CCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            88888888888888888776      7888888888888888877777777665543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=8.9e-24  Score=191.90  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=117.4

Q ss_pred             hhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHH
Q 012836           71 KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLH  150 (455)
Q Consensus        71 ~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh  150 (455)
                      ...+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++..+.+++..|..|+||||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            445778999999999999999999999999887 7889999999999999999999999999878999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCC
Q 012836          151 LAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG  223 (455)
Q Consensus       151 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g  223 (455)
                      +|+..|+.+++++|+++|+++      +.+|.+|+||||+|+..++.++++.|++.|+      +.+..|.+|
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~------~~~~~~~~~  206 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGART------DLRNIEKKLAFDMATNAACASLLKKKQGTDA------VRTLSNAED  206 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCS------CCCCTTSCCHHHHCCSHHHHHHHC----------------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCC------ccccCCCCCHHHHhcchhHHHHHHHHhccch------hhhccchhh
Confidence            999999999999999999887      8999999999999999999999999999988      455555443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=4.6e-23  Score=181.44  Aligned_cols=138  Identities=19%  Similarity=0.201  Sum_probs=123.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHH
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG-PERKTPLHFAAI  120 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~  120 (455)
                      .|.||||.|+..|+.++++.|++ +.+ ++..|..|+||||+|+..|+.+++++|++.++++ +.+| .+|+||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHh
Confidence            37899999999999999999999 655 6778999999999999999999999999999998 5566 889999999999


Q ss_pred             hCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHH
Q 012836          121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV  200 (455)
Q Consensus       121 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv  200 (455)
                      .|+.+++++|+++ +.+++..|.+|+||||+|++.++                       ...+.++|++|+..|+.+++
T Consensus       120 ~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~-----------------------~~~~~~~l~~a~~~~~~~i~  175 (183)
T 3deo_A          120 YVRPEVVEALVEL-GADIEVEDERGLTALELAREILK-----------------------TTPKGNPMQFGRRIGLEKVI  175 (183)
T ss_dssp             TTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHH-----------------------TCCCCSHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhcc-----------------------CcccccHHHHHHHcCHHHHH
Confidence            9999999999998 89999999999999999986321                       14567999999999999999


Q ss_pred             HHHHhc
Q 012836          201 ELLLSH  206 (455)
Q Consensus       201 ~~Ll~~  206 (455)
                      ++|.++
T Consensus       176 ~~L~~~  181 (183)
T 3deo_A          176 NVLEGQ  181 (183)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            999865

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=3.4e-23  Score=173.16  Aligned_cols=128  Identities=28%  Similarity=0.287  Sum_probs=114.2

Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCC
Q 012836          106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN  185 (455)
Q Consensus       106 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~  185 (455)
                      .+|.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~~~~g~   77 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV------NTTGYQND   77 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCGGGC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc------cCcCCCCC
Confidence            5788999999999999999999999997 8899999999999999999999999999999998886      88999999


Q ss_pred             cHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhc
Q 012836          186 TALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAG  250 (455)
Q Consensus       186 T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~g  250 (455)
                      ||||+|+..++.+++++|+++|+      +++.+|..|.||+|+|.    ..+..+++++|.+.+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~----~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGA------SRNAVNIFGLRPVDYTD----DESMKSLLLLPEKNE  132 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCGGGGCC----CHHHHHHHSCC----
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHh----hccHHHHHhhccccc
Confidence            99999999999999999999998      89999999999999994    345566666655443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=4.4e-23  Score=190.27  Aligned_cols=140  Identities=19%  Similarity=0.189  Sum_probs=126.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHH
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG-PERKTPLHFAAI  120 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d-~~g~tpLh~A~~  120 (455)
                      .|.||||.|+..|+.++++.|++ +.+ ++..|..|+||||+|+..|+.+++++|+++++++ +.+| ..|.||||+|+.
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHH
Confidence            38899999999999999999999 665 6778999999999999999999999999999998 5566 889999999999


Q ss_pred             hCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHH
Q 012836          121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV  200 (455)
Q Consensus       121 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv  200 (455)
                      .|+.+++++|+++ +.+++..|..|+||||+|+..+                       .+..+.||||+|+..|+.+++
T Consensus       121 ~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~-----------------------~~~~~~~~l~~a~~~g~~~iv  176 (244)
T 3ui2_A          121 YVRPEVVEALVEL-GADIEVEDERGLTALELAREIL-----------------------KTTPKGNPMQFGRRIGLEKVI  176 (244)
T ss_dssp             TTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHH-----------------------TTCCCSSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHH-----------------------hccCCCCHHHHHHHcChHHHH
Confidence            9999999999998 8999999999999999998521                       235688999999999999999


Q ss_pred             HHHHhcCC
Q 012836          201 ELLLSHGA  208 (455)
Q Consensus       201 ~~Ll~~ga  208 (455)
                      ++|++++.
T Consensus       177 ~~L~~~~~  184 (244)
T 3ui2_A          177 NVLEGQVF  184 (244)
T ss_dssp             HHHHHHHE
T ss_pred             HHHHHhcc
Confidence            99998765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=192.42  Aligned_cols=138  Identities=22%  Similarity=0.178  Sum_probs=92.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCcccccc-----CCCCCCCHHHHHHHh---CCHHHHHHHHHhcCccccccccCCCcH
Q 012836           77 GFSPMHMASANGQIDVVRGLMKFDQKLCHL-----QGPERKTPLHFAAIK---GRVDVVSEMLSAYGECAEDVSVQRETV  148 (455)
Q Consensus        77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~  148 (455)
                      +.++||.|+..|+.+.++.|++.++++...     .+..|.||||+|+..   |+.+++++|++. +.+++..|.+|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCH
Confidence            345677777777777777777776665221     466677777777765   677777777776 66677777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHH
Q 012836          149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD  228 (455)
Q Consensus       149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~  228 (455)
                      ||+|+..|+.+++++|+++|+++      +.+|.+|+||||+|+..++.+++++|+++|++            .|.||||
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------------~g~tpLh  291 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALV------GTVNEAGETALDIARKKHHKECEELLEQAQAG------------TFAFPLH  291 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCC------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------------TTSSCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------------CCCChhH
Confidence            77777777777777777776665      66777777777777777777777777777766            2567777


Q ss_pred             HHhhC
Q 012836          229 VLLSF  233 (455)
Q Consensus       229 ~a~~~  233 (455)
                      +|+..
T Consensus       292 ~A~~~  296 (301)
T 2b0o_E          292 VDYSW  296 (301)
T ss_dssp             -----
T ss_pred             HHHhc
Confidence            77554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.4e-22  Score=178.27  Aligned_cols=141  Identities=23%  Similarity=0.222  Sum_probs=125.3

Q ss_pred             hcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc-cCCCcHHHH
Q 012836           73 VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS-VQRETVLHL  151 (455)
Q Consensus        73 ~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~  151 (455)
                      .+.+|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..+ ..|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHH
Confidence            36689999999999999999999999 7776 88999999999999999999999999997 88898888 889999999


Q ss_pred             HHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          152 AVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       152 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      |+..|+.+++++|+++|+++      +.+|.+|+||||+|+..++.                       ..+.++++++.
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~tpl~~A~~~~~~-----------------------~~~~~~l~~a~  167 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADI------EVEDERGLTALELAREILKT-----------------------TPKGNPMQFGR  167 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCT------TCCCTTSCCHHHHHHHHHHT-----------------------CCCCSHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCC------cCCCCCCCCHHHHHHHhccC-----------------------cccccHHHHHH
Confidence            99999999999999999887      89999999999999864321                       34679999996


Q ss_pred             hCCCCcCchhHHHHHHHh
Q 012836          232 SFPSEAGDREIEEIFWSA  249 (455)
Q Consensus       232 ~~~~~~~~~~i~~~L~~~  249 (455)
                      .    .+..+++++|.++
T Consensus       168 ~----~~~~~i~~~L~~~  181 (183)
T 3deo_A          168 R----IGLEKVINVLEGQ  181 (183)
T ss_dssp             H----HHHHHHHHHHHTC
T ss_pred             H----cCHHHHHHHHHHh
Confidence            4    4788899998754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=1.3e-22  Score=166.35  Aligned_cols=108  Identities=22%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHc
Q 012836           76 DGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKN  155 (455)
Q Consensus        76 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~  155 (455)
                      .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHc
Confidence            3445555555555555555555555444 44455555555555555555555555544 445555555555555555555


Q ss_pred             CCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHH
Q 012836          156 NQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA  191 (455)
Q Consensus       156 ~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A  191 (455)
                      ++.+++++|+++|+++      +.+|.+|+||||+|
T Consensus        84 ~~~~~v~~Ll~~ga~~------~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADK------TVKGPDGLTAFEAT  113 (123)
T ss_dssp             TCHHHHHHHHHTTCCT------TCCCTTSCCHHHHC
T ss_pred             CCHHHHHHHHHcCCCC------CCcCCCCCCHHHHh
Confidence            5555555555555544      55555555555555

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=5.6e-22  Score=162.46  Aligned_cols=110  Identities=28%  Similarity=0.357  Sum_probs=103.1

Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836          108 GPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA  187 (455)
Q Consensus       108 d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~  187 (455)
                      +..|.||||.|+..|+.+++++|++. +.+++..|..|+||||+|+..++.+++++|+++|+++      +.+|..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI------NAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT------TCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------CcCCCCCCCH
Confidence            46788999999999999999999997 7889999999999999999999999999999998887      8999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836          188 LHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       188 Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a  230 (455)
                      ||+|+..++.+++++|+++|+      +++.+|..|.||+|+|
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGA------DKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHh
Confidence            999999999999999999998      8899999999999999

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=3.5e-22  Score=184.24  Aligned_cols=144  Identities=16%  Similarity=0.217  Sum_probs=125.1

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhc-CCCCcHHHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVN-QDGFSPMHM   83 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpLh~   83 (455)
                      ++.|+|+||.|+..|+.+.++.|++ +.+....  +..|.||||+|+..|+.+++++|++++.++ +..+ ..|+||||+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence            3578899999999999999999999 5544332  345999999999999999999999999885 4445 889999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836           84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA  163 (455)
Q Consensus        84 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~  163 (455)
                      |+..|+.+++++|+++++++ +.+|..|.||||+|+..++                  +..+.||||+|+..|+.+++++
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~  178 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINV  178 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHH
Confidence            99999999999999999998 8899999999999986332                  2467899999999999999999


Q ss_pred             HHHHhhhh
Q 012836          164 LVDWIRDV  171 (455)
Q Consensus       164 Ll~~g~~~  171 (455)
                      |++.+.+.
T Consensus       179 L~~~~~~~  186 (244)
T 3ui2_A          179 LEGQVFEY  186 (244)
T ss_dssp             HHHHHEEE
T ss_pred             HHHhcccc
Confidence            99876553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=3.8e-22  Score=181.09  Aligned_cols=127  Identities=22%  Similarity=0.311  Sum_probs=112.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCCHHHHHHH
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKF-DQKLCHLQGPERKTPLHFAAI  120 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~  120 (455)
                      .|.||||+|+..|+.++++.|++.+.+ ++..|..|+||||+|+..|+.+++++|++. +.++ +.+|..|.||||+|+.
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence            368999999999999999999999887 577799999999999999999999999998 7776 8899999999999999


Q ss_pred             hCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhh
Q 012836          121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV  171 (455)
Q Consensus       121 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~  171 (455)
                      .|+.+++++|+++ |.+++..|.+|+||||+|+..++.++++.+++.++..
T Consensus       150 ~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          150 KGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             cCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            9999999999998 9999999999999999999999999999999988765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=9.5e-22  Score=186.89  Aligned_cols=141  Identities=19%  Similarity=0.151  Sum_probs=122.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhh-----hcCCCCcHHHHHHHc---CCHHHHHHHHhcCccccccCCCCCCCH
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKE-----VNQDGFSPMHMASAN---GQIDVVRGLMKFDQKLCHLQGPERKTP  114 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~tp  114 (455)
                      ..++||.|+..|+.+.++.|++.++++...     .+..|.||||+|+..   |+.+++++|++.++++ +.+|.+|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence            447799999999999999999999884332     588999999999997   8999999999999998 8899999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhc
Q 012836          115 LHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK  194 (455)
Q Consensus       115 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~  194 (455)
                      ||+|+..|+.+++++|++. |++++..|.+|+||||+|+..++.+++++|+++|++            .|+||||+|+..
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------------~g~tpLh~A~~~  296 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------------TFAFPLHVDYSW  296 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------------TTSSCCC-----
T ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------------CCCChhHHHHhc
Confidence            9999999999999999997 999999999999999999999999999999998765            478999999988


Q ss_pred             CCh
Q 012836          195 REC  197 (455)
Q Consensus       195 ~~~  197 (455)
                      |+.
T Consensus       297 g~~  299 (301)
T 2b0o_E          297 VIS  299 (301)
T ss_dssp             ---
T ss_pred             CCc
Confidence            754

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.7e-21  Score=183.10  Aligned_cols=125  Identities=16%  Similarity=0.156  Sum_probs=116.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCcccc-----ccCCCCCCCHHHHHHHh---CCHHHHHHHHHhcCccccccccCCCcH
Q 012836           77 GFSPMHMASANGQIDVVRGLMKFDQKLC-----HLQGPERKTPLHFAAIK---GRVDVVSEMLSAYGECAEDVSVQRETV  148 (455)
Q Consensus        77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~  148 (455)
                      ..++|+.|+..|+.+.++.+++.+.+..     +..|..|.||||+|+..   |+.+++++|++. |.+++..|.+|+||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCH
Confidence            4578999999999999999999998852     44588899999999999   899999999998 89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      ||+|+..|+.+++++|+++|+++      +.+|.+|+||||+|+..|+.+++++|+++|+
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASI------EIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC------CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999987      8999999999999999999999999999998

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=5.1e-21  Score=186.18  Aligned_cols=147  Identities=16%  Similarity=0.172  Sum_probs=118.2

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHhcCccccccCC--CCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHH
Q 012836           76 DGFSPMHMASAN-GQIDVVRGLMKFDQKLCHLQG--PERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA  152 (455)
Q Consensus        76 ~g~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  152 (455)
                      .+.|+||.|+.. |+.++++.|++.++++ +..+  .+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            456899999999 9999999999999998 6667  8899999999999999999999998 899999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhh
Q 012836          153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLS  232 (455)
Q Consensus       153 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~  232 (455)
                      +..|+.+++++|+++|+++      +.+|.+|+||||+|+..++.+++++|++.+..   ..+....+..+.|+++++..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~---~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADL------GARDSEGRDPLTIAMETANADIVTLLRLAKMR---EAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHcCcHHHHHHHHHCcCCC------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---cccccccCCCCCCHHHHHHH
Confidence            9999999999999999987      89999999999999999999999999988763   22455667788999988854


Q ss_pred             C
Q 012836          233 F  233 (455)
Q Consensus       233 ~  233 (455)
                      +
T Consensus       347 ~  347 (368)
T 3jue_A          347 F  347 (368)
T ss_dssp             -
T ss_pred             H
Confidence            3

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=2.6e-20  Score=174.97  Aligned_cols=125  Identities=26%  Similarity=0.284  Sum_probs=114.1

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCcc------ccccccCCCcHHHHHHHc---CCHHHHHHHHHHhhhhcccccccccCC
Q 012836          112 KTPLHFAAIKGRVDVVSEMLSAYGEC------AEDVSVQRETVLHLAVKN---NQFEVVRALVDWIRDVKKENILNMKDK  182 (455)
Q Consensus       112 ~tpLh~A~~~g~~~~v~~Ll~~~~~~------~~~~~~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~~~~~~d~  182 (455)
                      .++|+.|+..|+.+.++.++.. +.+      ++..|..|+||||+|+..   ++.+++++|+++|+++      |.+|.
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i------n~~d~  203 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------DKQTG  203 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------TCCCT
T ss_pred             hhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc------cccCC
Confidence            4689999999999999999987 555      344478899999999999   8999999999999987      89999


Q ss_pred             CCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccc
Q 012836          183 QGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMR  253 (455)
Q Consensus       183 ~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~  253 (455)
                      .|+||||+|+..|+.+++++|+++|+      +++.+|..|.||||+|..    .++.+++++|+++|+.+
T Consensus       204 ~g~TpLh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          204 KGSTALHYCCLTDNAECLKLLLRGKA------SIEIANESGETPLDIAKR----LKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999      899999999999999975    47899999999999954

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=3.3e-20  Score=180.50  Aligned_cols=147  Identities=18%  Similarity=0.159  Sum_probs=116.6

Q ss_pred             CChHHHHHHHc-CCHHHHHHHHHcCCcchhhhc--CCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHH
Q 012836           43 AGNPLHVASAY-GHVDFVKEIIRLKPDFAKEVN--QDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAA  119 (455)
Q Consensus        43 g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~  119 (455)
                      +.|+||.|+.. |+.++++.|++++.+ ++..+  ..|.||||+|+..|+.+++++|+++++++ +.+|..|.||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            45899999999 999999999999988 45556  88999999999999999999999999998 889999999999999


Q ss_pred             HhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcC
Q 012836          120 IKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKR  195 (455)
Q Consensus       120 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~  195 (455)
                      ..|+.+++++|+++ +.+++..|.+|+||||+|+..++.+++++|++.+...   ......+..+.|+++++....
T Consensus       277 ~~g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~---~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          277 ILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE---AEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------------
T ss_pred             HcCcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc---ccccccCCCCCCHHHHHHHHH
Confidence            99999999999998 8999999999999999999999999999999877442   122455677889998887553

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=5.5e-20  Score=142.64  Aligned_cols=92  Identities=45%  Similarity=0.618  Sum_probs=66.0

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHH
Q 012836          110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALH  189 (455)
Q Consensus       110 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh  189 (455)
                      +|+||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|.+|+||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------NAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------CccCCCCCCHHH
Confidence            366777777777777777777765 6667777777777777777777777777777777665      667777777777


Q ss_pred             HHHhcCChHHHHHHHhcCC
Q 012836          190 LATWKRECQVVELLLSHGA  208 (455)
Q Consensus       190 ~A~~~~~~~iv~~Ll~~ga  208 (455)
                      +|+..|+.+++++|+++|+
T Consensus        74 ~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           74 LAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCC
Confidence            7777777777777777765

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=8.3e-20  Score=141.64  Aligned_cols=90  Identities=34%  Similarity=0.564  Sum_probs=42.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcC
Q 012836           77 GFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNN  156 (455)
Q Consensus        77 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~  156 (455)
                      |+||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++. +.+++..|.+|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcC
Confidence            444444444444444444444444444 44444444444444444444444444443 4444444444455555555555


Q ss_pred             CHHHHHHHHHHh
Q 012836          157 QFEVVRALVDWI  168 (455)
Q Consensus       157 ~~~~v~~Ll~~g  168 (455)
                      +.+++++|+++|
T Consensus        80 ~~~~~~~Ll~~g   91 (93)
T 1n0q_A           80 HLEVVKLLLEAG   91 (93)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcC
Confidence            555555544443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=4.1e-20  Score=149.32  Aligned_cols=109  Identities=37%  Similarity=0.450  Sum_probs=86.7

Q ss_pred             cCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCC
Q 012836          106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGN  185 (455)
Q Consensus       106 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~  185 (455)
                      .+|.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..++.+++++|+++|+++      +.+|..|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------~~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV------NARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT------TCCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC------cccCCCCC
Confidence            4677788888888888888888888876 6777777888888888888888888888888877776      77888888


Q ss_pred             cHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHH
Q 012836          186 TALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL  227 (455)
Q Consensus       186 T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l  227 (455)
                      ||||+|+..++.+++++|+++|+      +++.++..|.||-
T Consensus        77 tpl~~A~~~~~~~~~~~Ll~~ga------~~n~~~~~~~~~~  112 (115)
T 2l6b_A           77 TPEHLAKKNGHHEIVKLLDAKGA------DVNARSWGSSHHH  112 (115)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTSS------SHHHHSCCCC---
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCC------CCCcCCccccccc
Confidence            88888888888888888888888      7888888887763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=9.9e-20  Score=147.03  Aligned_cols=107  Identities=30%  Similarity=0.417  Sum_probs=65.9

Q ss_pred             hcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHH
Q 012836           73 VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA  152 (455)
Q Consensus        73 ~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A  152 (455)
                      +|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHH
Confidence            3555666666666666666666666666555 55566666666666666666666666655 555666666666666666


Q ss_pred             HHcCCHHHHHHHHHHhhhhcccccccccCCCCCcH
Q 012836          153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTA  187 (455)
Q Consensus       153 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~  187 (455)
                      +..++.+++++|+++|+++      |.++..|.||
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~------n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADV------NARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSH------HHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCC------CcCCcccccc
Confidence            6666666666666666665      5556655554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=4.7e-17  Score=130.23  Aligned_cols=87  Identities=26%  Similarity=0.316  Sum_probs=35.9

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHH
Q 012836           74 NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAV  153 (455)
Q Consensus        74 ~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~  153 (455)
                      |.+|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCcHHHHHH
Confidence            334444444444444444444444444333 33344444444444444444444444433 3334444444444444444


Q ss_pred             HcCCHHHHH
Q 012836          154 KNNQFEVVR  162 (455)
Q Consensus       154 ~~~~~~~v~  162 (455)
                      ..|+.++++
T Consensus        99 ~~~~~~~~~  107 (110)
T 2zgd_A           99 DNGNEDLAE  107 (110)
T ss_dssp             HHTCHHHHH
T ss_pred             HcCCHHHHH
Confidence            444444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=6.7e-17  Score=129.34  Aligned_cols=92  Identities=29%  Similarity=0.345  Sum_probs=84.5

Q ss_pred             ccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCC
Q 012836          105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG  184 (455)
Q Consensus       105 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G  184 (455)
                      ...|.+|.||||+|+..|+.+++++|++. +.+++..|..|+||||+|+..|+.+++++|+++|+++      +.+|..|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~------~~~d~~g   90 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV------XAQDKFG   90 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTS
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------cccccCC
Confidence            45678899999999999999999999987 8899999999999999999999999999999998887      8999999


Q ss_pred             CcHHHHHHhcCChHHHHHH
Q 012836          185 NTALHLATWKRECQVVELL  203 (455)
Q Consensus       185 ~T~Lh~A~~~~~~~iv~~L  203 (455)
                      +||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	455
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-22
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-12
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 29/260 (11%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLHVAS  GH+  VK +++         N    +P+HMA+  G  +V + L++   K+ +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-N 60

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV 165
            +  + +TPLH AA  G  ++V  +L          +     +   A + +         
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE------- 113

Query: 166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLT 225
             +  ++KE       K+G T LH+A    + +V ELLL   A+       NA   +GLT
Sbjct: 114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH------PNAAGKNGLT 167

Query: 226 ALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCISTEANLRQ 285
            L V         + +I ++    G             SP  +G T + +  + +  +  
Sbjct: 168 PLHVA----VHHNNLDIVKLLLPRGGS---------PHSPAWNGYTPL-HIAAKQNQVEV 213

Query: 286 PNDLMEYFKFKKGRDSPGET 305
              L++Y          G T
Sbjct: 214 ARSLLQYGGSANAESVQGVT 233

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 3e-22
 Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 40/228 (17%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
            PLHVA  + ++D VK ++            +G++P+H+A+   Q++V R L+++     
Sbjct: 167 TPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-A 224

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
           + +  +  TPLH AA +G  ++V  +L +        +    T LHL  +     V   L
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

Query: 165 VDWIRDV---------------------------KKENILNMKDKQGNTALHLATWKREC 197
           +     V                           + +  +N K K G + LH A  +   
Sbjct: 284 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 198 QVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEI 245
            +V LLL +GA+       N  +  G T L +        G   + ++
Sbjct: 344 DIVTLLLKNGAS------PNEVSSDGTTPLAIA----KRLGYISVTDV 381

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 1e-18
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
            PLH+A+  GH + V  ++  K       N+ G +P+H+ +  G + V   L+K    + 
Sbjct: 233 TPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
                   TPLH A+  G + +V + L  +       +    + LH A +    ++V  L
Sbjct: 292 A-TTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL 224
           +            N     G T L +A       V ++L       S    V  ++   +
Sbjct: 350 LKNGASP------NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS---FVLVSDKHRM 400

Query: 225 TALDVL 230
           +  + +
Sbjct: 401 SFPETV 406

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 9e-16
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVK 172
           TPLH A+  G + +V  +L   G      +V+ ET LH+A +    EV + L+     V 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV- 59

Query: 173 KENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN 209
                N K K   T LH A       +V+LLL + AN
Sbjct: 60  -----NAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 1e-13
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
           T LH+A       +V+ L+            N+ + +  T LH+A      +V + LL +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP------NVSNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 207 GANASGGLEVNATNHSGLTAL 227
            A       VNA      T L
Sbjct: 56  KAK------VNAKAKDDQTPL 70

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 1e-13
 Identities = 71/278 (25%), Positives = 108/278 (38%), Gaps = 62/278 (22%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGN-----PLHVASAYGHVDFVKEIIRLK 66
           L  AA  G  +  + L       L   A  +A       PLH A+  GH + VK ++   
Sbjct: 37  LHMAARAGHTEVAKYL-------LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 89

Query: 67  PD--------------------------------FAKEVNQDGFSPMHMASANGQIDVVR 94
            +                                    + + GF+P+H+A+  G++ V  
Sbjct: 90  ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 149

Query: 95  GLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK 154
            L++ D    +  G    TPLH A     +D+V ++L   G      +    T LH+A K
Sbjct: 150 LLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIV-KLLLPRGGSPHSPAWNGYTPLHIAAK 207

Query: 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGL 214
            NQ EV R+L+ +          N +  QG T LHLA  +   ++V LLLS  AN     
Sbjct: 208 QNQVEVARSLLQYGGSA------NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN----- 256

Query: 215 EVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAM 252
             N  N SGLT     L   ++ G   + ++    G M
Sbjct: 257 -GNLGNKSGLTP----LHLVAQEGHVPVADVLIKHGVM 289

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.5 bits (236), Expect = 1e-22
 Identities = 41/235 (17%), Positives = 83/235 (35%), Gaps = 25/235 (10%)

Query: 9   DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPD 68
           +++    +    +Q +   F    L L+ P       PLH  ++  +++ VK +++   +
Sbjct: 73  NQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 132

Query: 69  FAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH---LQGPERKTPLHFAAIKGRVD 125
                +  G S +  A  +               L     L+    +T LH   I   + 
Sbjct: 133 RLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 191

Query: 126 VVSEMLSAYGEC------------AEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKK 173
             S     Y +              +  + ++E+  +      +  ++  L         
Sbjct: 192 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL---DLKWII 248

Query: 174 ENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD 228
            N+LN +D  G+T L++A       +V+ LL +GA+          N SGL  +D
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD------PFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (171), Expect = 4e-14
 Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 18/250 (7%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
            +   L  ++Q +      +    ++   +S     HV+      +        + +   
Sbjct: 42  FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 101

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIK---GRVDVVS 128
            V++ G +P+H  ++   +++V+ L+K      +      ++ L  A             
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 129 EMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENIL-------NMKD 181
            +L     C         T+LH  +  +      A   +  D+    I+           
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 182 KQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDRE 241
            +  +  +    +R+  ++E L      A+    +NA + +G T     L+  +  G+  
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANM---LNAQDSNGDTC----LNIAARLGNIS 273

Query: 242 IEEIFWSAGA 251
           I +     GA
Sbjct: 274 IVDALLDYGA 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 41  ASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQ---DGFSPMHMASANGQIDVVRGLM 97
            +              D + E + LK   A  +N    +G + +++A+  G I +V  L+
Sbjct: 220 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 279

Query: 98  KFDQKLCHLQGPERKTPLHFAA 119
            +      +       P+ F A
Sbjct: 280 DYGADP-FIANKSGLRPVDFGA 300

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 5e-21
 Identities = 57/281 (20%), Positives = 94/281 (33%), Gaps = 53/281 (18%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
           LI A    DV  +QQL +E    ++         PLH A      D V+ ++R   D   
Sbjct: 9   LIKAVQNEDVDLVQQL-LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEML 131
                    +  A A     +   L K      +       T    AA+ G+V  +  + 
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGAD--VNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 132 SAYG---------ECAEDVSVQRETVLHLAVKNNQFEVVRALVD---------------- 166
                        E  E +     T L  A +    EV++ L+D                
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 167 -----------WIRDVKKENI-----LNMKDKQGNTALHLATWKRECQVVELLLSHGANA 210
                       +  +    +     +N++ ++G T L LA  K+   +V+ LL      
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE--- 242

Query: 211 SGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
              +E+N T+  G TAL +      E   ++I E+    GA
Sbjct: 243 --HIEINDTDSDGKTALLL----AVELKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 1e-19
 Identities = 36/188 (19%), Positives = 75/188 (39%), Gaps = 23/188 (12%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDF---------AKEVNQDGFSPMHMASANGQIDVVRG 95
                A+ YG V  +K + +   +           + + + G + +  A+  G ++V++ 
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 96  LMKF---DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLA 152
           L+     D   C   G         ++    V+ ++ +L  +G        + +T L LA
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

Query: 153 VKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASG 212
           V+     +V+ L++     ++   +N  D  G TAL LA   +  ++ ELL   GA+   
Sbjct: 227 VEKKHLGLVQRLLE-----QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS--- 278

Query: 213 GLEVNATN 220
               +  +
Sbjct: 279 ---TDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 1e-18
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 11/211 (5%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           + L  A     VD V++++    +   +  + G++P+H A    + D+V  L+       
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE-LLLRHGADP 65

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
            L+     TP   AAI G V ++   LS  G    +      T    A    + + ++ L
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 165 VDWIRDVKKEN----ILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATN 220
                +V              K G TAL  A  K   +V+++LL        G +VNA +
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE-----MGADVNACD 179

Query: 221 HSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           + G  AL   L    ++    I  +    GA
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 6e-14
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL- 103
             L  A+  GHV+ +K ++          +  G + +  A  +     V  +        
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 104 --CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVV 161
              +++G   KTPL  A  K  + +V  +L        D     +T L LAV+    ++ 
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 162 RALVDWIRDVKKENIL 177
             L          +++
Sbjct: 270 ELLCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 142 SVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE 201
           +V+   +L  AV+N   ++V+ L++        N+   +++ G T LH A       +VE
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLE-----GGANVNFQEEEGGWTPLHNAVQMSREDIVE 56

Query: 202 LLLSH 206
           LLL H
Sbjct: 57  LLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 31/149 (20%)

Query: 110 ERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD--- 166
           E    L  A     VD+V ++L               T LH AV+ ++ ++V  L+    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 167 ------------------------WIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL 202
                                       + K   +N  D  G TA   A    + + ++ 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 203 LLSHGANAS----GGLEVNATNHSGLTAL 227
           L   GAN +       +       G TAL
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATAL 152

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 7e-19
 Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 45/215 (20%)

Query: 47  LHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHL 106
           +   +  G ++ +KE I      A   +QD  + +H A + G  ++V  L++    +   
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 107 QGPER--------------------------------KTPLHFAAIKGRVDVVSEMLSAY 134
                                                 TPLH+AA K R ++   ML   
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA-VMLLEG 125

Query: 135 GECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK 194
           G   +       T +H A      +++  L+ +          N++D +GNT LHLA  +
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST------NIQDTEGNTPLHLACDE 179

Query: 195 RECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
              +  +LL+S GA+      +   N    T L V
Sbjct: 180 ERVEEAKLLVSQGAS------IYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 1e-12
 Identities = 38/226 (16%), Positives = 83/226 (36%), Gaps = 44/226 (19%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGN-PLHVASAYGHVDFVKEIIRLKPDFA 70
           +   A +G ++ L++  + +  +             LH A + GH + V+ +++L     
Sbjct: 7   VCNLAYSGKLEELKESILADKSLAT--RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 71  K--------------------------------EVNQDGFSPMHMASANGQIDVVRGLMK 98
                                             VNQ+G +P+H A++  + ++   L++
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 99  FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
                   +     T +H AA KG + ++  +L  Y         +  T LHLA    + 
Sbjct: 125 GGANP-DAKDHYEATAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERV 182

Query: 159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL 204
           E  + LV     +       +++K+  T L +A       +++ ++
Sbjct: 183 EEAKLLVSQGASI------YIENKEEKTPLQVAKGGLG-LILKRMV 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.6 bits (189), Expect = 5e-17
 Identities = 39/243 (16%), Positives = 75/243 (30%), Gaps = 55/243 (22%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCH 105
           PLH A        V+E++  KP    + +QDG  P+H + +    ++   L+   + +  
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 106 LQGPERKTPLHFAAIKGRVDVVSEM----------------------------------- 130
              P+      F       ++                                       
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 131 -LSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALH 189
            L   G          +  LH A      ++       +     ++ +N +DKQG T L 
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKL-----IELLCGLGKSAVNWQDKQGWTPLF 177

Query: 190 LATWKRECQVVELLLS-HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWS 248
            A  +       LL+  +GA        +  ++ G  A DV       A + ++++ F +
Sbjct: 178 HALAEGHGDAAVLLVEKYGAE------YDLVDNKGAKAEDV-------ALNEQVKKFFLN 224

Query: 249 AGA 251
              
Sbjct: 225 NVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 7e-12
 Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 49/237 (20%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGN-PLHVASAYGHVDFVKEII------- 63
           L  A +  +   +Q+L    P +L        G  PLH + ++   +    ++       
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 64  ------------------------------RLKPDFAKEVNQDGFSPMHMASANGQIDVV 93
                                         R       ++   G + +H+A      +V 
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 94  RGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAV 153
           + L++    +   +    + PLH AA  G + ++  +             Q  T L  A+
Sbjct: 122 QFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANA 210
                +    LV+     K     ++ D +G  A  +A  +   QV +  L++  +A
Sbjct: 181 AEGHGDAAVLLVE-----KYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 147 TVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
             LH A   N+F  V+ L+       K ++L  KD+ G   LH +   +  ++   LLS 
Sbjct: 2   YPLHQACMENEFFKVQELLH-----SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

Query: 207 G 207
            
Sbjct: 57  M 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 10/45 (22%), Positives = 15/45 (33%)

Query: 113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQ 157
            PLH A ++     V E+L +               LH +V    
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 5/43 (11%)

Query: 185 NTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
           N  LH A  + E   V+ LL      S    +   +  G   L
Sbjct: 1   NYPLHQACMENEFFKVQELL-----HSKPSLLLQKDQDGRIPL 38

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 78.8 bits (193), Expect = 1e-16
 Identities = 31/220 (14%), Positives = 53/220 (24%), Gaps = 33/220 (15%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
              AA  G +  L +L    P  +     A   +   +A+  GH+  +  +  L P  A 
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 72  EV--NQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSE 129
            +   ++ ++    A   G  +V+  L+                        G   V   
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLD--------CPVMLAYAEIHEFEYGEKYVNPF 241

Query: 130 MLSAYGECAEDVSVQRE----------------------TVLHLAVKNNQFEVVRALVDW 167
           +        E     +                         L         + +R L+  
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 301

Query: 168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
                            N  L LA          LLLS  
Sbjct: 302 PGIKALAPT-ATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 76.9 bits (188), Expect = 5e-16
 Identities = 23/217 (10%), Positives = 50/217 (23%), Gaps = 23/217 (10%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC- 104
            L +       +  +  I         ++      + +        V + L  +      
Sbjct: 15  QLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNR 74

Query: 105 ---------HLQGPERKTPLHFAAIKGRVDVVS--EMLSAYGECAEDVSVQRETVLHLAV 153
                    H +G + +     AAI G    +    +L    E  + +  +      LA 
Sbjct: 75  NAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 134

Query: 154 KNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGG 213
           +N    V+  L +                +   A  LA       V+  L       +  
Sbjct: 135 ENGHLHVLNRLCELAPTEIMAM----IQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 190

Query: 214 LEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAG 250
           +      ++               G   +        
Sbjct: 191 MIQAENYYAFRW-------AAVGRGHHNVINFLLDCP 220

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 73.8 bits (180), Expect = 5e-15
 Identities = 40/254 (15%), Positives = 71/254 (27%), Gaps = 36/254 (14%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGN-----PLHVASAYGHVDFVKEIIRLK 66
              AA+TG    L  L     L+L +                +A+  GH+  +  +  L 
Sbjct: 94  CFVAAITGCSSALDTL----CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149

Query: 67  PDF-AKEVNQDGFSPMHMASANGQIDVVRGLMKF--DQKLCHLQGPERKTPLHFAAIKGR 123
           P      +  + +    +A+ NG + V+  L +    +    +Q          A  +G 
Sbjct: 150 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 209

Query: 124 VDVVSEMLSAYGECAEDVSVQRETVLHLAV-------KNNQFEVVRALVDWIRDVKKENI 176
            +V+   L           +         V        N   E+  A      D   + +
Sbjct: 210 HNVI-NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 268

Query: 177 LNMKDKQGNTALHLATWKREC---QVVELLLSHGANASGGLEVNATNHSGLTALDV---- 229
              +  QG   L     + +      +  LLS     +               L +    
Sbjct: 269 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA-LAPTATIPGDANELLRLALRL 327

Query: 230 --------LLSFPS 235
                   LLS PS
Sbjct: 328 GNQGACALLLSIPS 341

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.5 bits (174), Expect = 2e-14
 Identities = 27/218 (12%), Positives = 61/218 (27%), Gaps = 13/218 (5%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFA--KEVNQDGFSPMHMASANGQIDVVRGLMK---- 98
               VA+  G    +  +  L       K +  + +    +A+ NG + V+  L +    
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 99  FDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV--SVQRETVLHLAVKNN 156
               +   +          AA  G + V++ +       A  +  +         AV   
Sbjct: 152 EIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 208

Query: 157 QFEVVRALVDWIRDVKKENIL-NMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLE 215
              V+  L+D    +    I      ++           R  ++ +       +    L 
Sbjct: 209 HHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 268

Query: 216 VNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMR 253
             +    G   L   L   ++    +      S   ++
Sbjct: 269 TKSECLQGFYML-RNLIRRNDEVLLDDIRFLLSIPGIK 305

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.7 bits (187), Expect = 2e-16
 Identities = 43/255 (16%), Positives = 69/255 (27%), Gaps = 54/255 (21%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAK--EVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102
             LH+A  + H  F+  ++            N  G + +H+A+  G+   V  L      
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS-------------VQRETVL 149
           +   +        H A           +L        D S                    
Sbjct: 71  VLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 150 HLAVKNNQFEVVRALVDWIRDVKKENI----------------------------LNMKD 181
             +  N + E      DW   ++ EN                                + 
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 182 KQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDRE 241
             G T LHLA   +   V+ELLL  GA+        A  + G T L           +  
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGAD------PTARMYGGRTPLGS----ALLRPNPI 239

Query: 242 IEEIFWSAGAMRMRD 256
           +  +  + GA    D
Sbjct: 240 LARLLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 9e-14
 Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 17/163 (10%)

Query: 73  VNQDGFSPMHMASANGQIDVVRGLMKF--DQKLCHLQGPERKTPLHFAAIKGRVDVVSEM 130
           V +DG + +H+A  +     +  L+ F    +   LQ    +T LH AAI G    V ++
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 131 LSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV----DWIRDVKKENILNMKDKQGNT 186
            +A              + HLA +         L+       RD     +   +D   +T
Sbjct: 65  YAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 187 ALHLATW----KRECQVVELLLSHGANASGGLEVNATNHSGLT 225
           +   A        E +                 + A N+ G T
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQ------LEAENYDGHT 160

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 2e-13
 Identities = 39/244 (15%), Positives = 67/244 (27%), Gaps = 54/244 (22%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGN-PLHVASAYGHVDFVKEIIRLKPDFA 70
           L  A +      L  L   +    +       G   LH+A+  G    V+++        
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGV 71

Query: 71  KEVNQDGFSPMHMASANGQIDVVRGLMKF---------DQKLCHLQGPERKTPLHFAAIK 121
               + G + +H+A           L++          D  L   Q     T    AA+ 
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 122 GRVDVVSEMLSAYGECAEDVSVQR------------------------------------ 145
            + +  +E      +    +  +                                     
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 146 -ETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL 204
             T LHLAV+     V+  L+    D         +   G T L  A  +    +  LL 
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADP------TARMYGGRTPLGSALLRPNPILARLLR 245

Query: 205 SHGA 208
           +HGA
Sbjct: 246 AHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 176 ILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
           +     + G+TALHLA   +    ++ LL   A       ++  N  G TAL
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---YLDLQNDLGQTAL 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-13
 Identities = 35/206 (16%), Positives = 61/206 (29%), Gaps = 47/206 (22%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQ---DGFSPMHMASANGQIDVVRGLM---- 97
           + LH+A  +       E+IR        +N       +P+H+A    Q ++   L+    
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63

Query: 98  ----------------------------------KFDQKLCHLQGPERKTPLHFAAIKGR 123
                                                  +         T LH A+I G 
Sbjct: 64  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 123

Query: 124 VDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQ 183
           + +V  ++S   +          T LHLAV     ++V  L+    DV      N    Q
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV------NRVTYQ 177

Query: 184 GNTALHLATWKRECQVVELLLSHGAN 209
           G +   L   +   ++ + L      
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 39/223 (17%), Positives = 71/223 (31%), Gaps = 56/223 (25%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKF---DQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS 132
           DG S +H+A  + +  +   +++    D    + Q   ++TPLH A I  + ++   +L 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 133 AYGECAEDVSVQ--------------------------------------RETVLHLAVK 154
           A  +                                                T LHLA  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGL 214
           +    +V      +      ++   +   G TALHLA   +   +V LLL  GA+     
Sbjct: 121 HGYLGIV-----ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----- 170

Query: 215 EVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDL 257
            VN   + G +   +            I++         ++ L
Sbjct: 171 -VNRVTYQGYSPYQLT----WGRPSTRIQQQLGQLTLENLQML 208

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 3e-13
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 10/164 (6%)

Query: 43  AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102
           AG+ L  A+A G V  V+ ++  +      +N+ G + + +            L    Q 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV---MMFGSTAIALELLKQG 58

Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
                     T     A +       ++L  +G             +HLAV+        
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT---- 114

Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSH 206
                +  +  E+ L+ +D +G T L LA  +    +V++L  H
Sbjct: 115 ---AVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 43/243 (17%), Positives = 83/243 (34%), Gaps = 40/243 (16%)

Query: 12  LIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAK 71
            +AA  +GD + + +L      I +          LH A    +V  + + +        
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGL--TALHQACIDDNV-DMVKFLVENGANIN 100

Query: 72  EVNQDGFSPMHMASANGQIDVVRGLMKF-------------------------DQKLCHL 106
           + + +G+ P+H A++ G +D+   L+                             +    
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 107 QGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD 166
           +             +  +    + L++        +    T LH+A      EV++ L+ 
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220

Query: 167 WIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTA 226
              DV      N+KD  G T LH A    + +   +L+ +  +      + A N  G TA
Sbjct: 221 ARYDV------NIKDYDGWTPLHAAAHWGKEEACRILVENLCD------MEAVNKVGQTA 268

Query: 227 LDV 229
            DV
Sbjct: 269 FDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.7 bits (130), Expect = 7e-09
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 14/168 (8%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           G  +   ++ G             +  +         +  A    +  ++R   ++    
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188

Query: 104 CH---LQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEV 160
                       T LH AA KG  +V+ ++L               T LH A    + E 
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247

Query: 161 VRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA 208
            R LV+ + D+         +K G TA  +A       ++  L     
Sbjct: 248 CRILVENLCDM------EAVNKVGQTAFDVADED----ILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 141 VSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
           V      V   A  +   E V  L++   D+      N  +  G TALH A       +V
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADI------NYANVDGLTALHQACIDDNVDMV 89

Query: 201 ELLLSH 206
           + L+ +
Sbjct: 90  KFLVEN 95

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 42/234 (17%), Positives = 73/234 (31%), Gaps = 64/234 (27%)

Query: 71  KEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVV--- 127
            +V  D  +    A ++G  + V  L++    + +    +  T LH A I   VD+V   
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFL 92

Query: 128 -----------------------------SEMLSAYGECAEDVSVQRETVLHLAVKNNQF 158
                                        +E L + G     V+ + +T L +A +    
Sbjct: 93  VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152

Query: 159 EVVRALVD---------------------WIRDVKKENILNMKDKQGNTALHLATWKREC 197
           E+++  V+                                    K G TALH+A  K   
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 198 QVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGA 251
           +V++LL+    +      VN  ++ G T L       +  G  E   I      
Sbjct: 213 EVLKLLIQARYD------VNIKDYDGWTPLH----AAAHWGKEEACRILVENLC 256

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDK---QGNTALHLATWKRECQVVELLLS 205
           +  A +    E ++  +    D++   +   K K           A    + + V  LL 
Sbjct: 3   MADAKQKRN-EQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE 61

Query: 206 HGANASGGLEVNATNHSGLTAL 227
            GA+      +N  N  GLTAL
Sbjct: 62  RGAD------INYANVDGLTAL 77

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 5e-13
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 51/223 (22%)

Query: 46  PLHVASAYGHVDFVKEIIRLKPDFAKEVNQ---DGFSPMHMASANGQIDVVRGLM----- 97
           PLH+A   G++  V  ++ L     +E++       +P+H+A       VVR L+     
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 98  -------------------------------KFDQKLCHLQGPERKTPLHFAAIKGRVDV 126
                                                   +  +  T LH A      + 
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125

Query: 127 VSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNT 186
           V  +L    +          + L  AV+NN   +V+ L+           +N +   G++
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH------GANVNAQMYSGSS 179

Query: 187 ALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV 229
           ALH A+ +    +V  L+  GA+       +  N    T L V
Sbjct: 180 ALHSASGRGLLPLVRTLVRSGAD------SSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 10/156 (6%)

Query: 48  HVASAYGHVDFVKEIIRLK---PDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
           H+A  +     ++ ++          +  N DG + +H+A      + V+ L++    + 
Sbjct: 78  HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 137

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
            +     ++PL  A  +     + ++L  +G           + LH A       +VR L
Sbjct: 138 AVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 196

Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV 200
           V    D       ++K+   +T L +A  +R   ++
Sbjct: 197 VRSGADS------SLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRG 95
           + LH AS  G +  V+ ++R   D +   N    +P+ +A +   ID++RG
Sbjct: 179 SALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRG 228

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
             LHVA      + V+ ++    D      + G SP+  A  N  + +V+ L++    + 
Sbjct: 112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 171

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
             Q     + LH A+ +G + +V   L   G  +   +   +T L +A      +++R
Sbjct: 172 A-QMYSGSSALHSASGRGLLPLV-RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQ---RETVLHLAVKNNQF 158
            TPLH A ++G +  V  +++ + +   ++ +    R+T LHLAV     
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 184 GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTAL 227
           G+T LH+A  +     V  L++      GG E++  N+   T L
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLF--QQGGRELDIYNNLRQTPL 44

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 76  DGFSPMHMASANGQIDVVRGLMKFDQKL---CHLQGPERKTPLHFAAIKGRVDVVSEMLS 132
           DG +P+H+A   G +  V  L+   Q+      +    R+TPLH  A+   +  V  +L 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL-AVITTLPSVVRLLV 60

Query: 133 AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT 192
             G     +    +T  HLA ++     +RAL+D       +      D  G TALH+A 
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD--GLTALHVAV 118

Query: 193 WKRECQVVELLLSHGAN 209
                + V+LLL  GA+
Sbjct: 119 NTECQETVQLLLERGAD 135

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 2e-12
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 11/165 (6%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVN-QDGFSPMHMASANGQIDVVRGLMKFDQK 102
           GN L  A+A G ++ +  +++   +    VN Q+GF    +         +   +     
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVN----VNAQNGFGRTALQVMKLGNPEIARRLLLRGA 57

Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
              L+       +H AA  G +D +  +L    +   + +     +   A + +      
Sbjct: 58  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV--- 114

Query: 163 ALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHG 207
                       + +  ++ +G+TA  LA      +VV L+ ++G
Sbjct: 115 ---VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 6/38 (15%)

Query: 186 TALHLATWKRECQVVELLLSHGANASGGLEVNATNHSG 223
             L  A  + + + +  LL +  N      VNA N  G
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN------VNAQNGFG 34

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.9 bits (151), Expect = 5e-12
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 18/201 (8%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLC 104
             LH+A+ +   D  K ++    D   + N          +A+        ++  ++   
Sbjct: 25  TSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGV--FQILLRNRATN 82

Query: 105 HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL 164
                   T     A +  ++ + E L              +T LH A   N  E V  L
Sbjct: 83  LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNIL 142

Query: 165 VDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGL 224
           +    +       + +D +  T L LA  +   +  + LL + AN         T+H   
Sbjct: 143 LMHHANR------DAQDDKDETPLFLAAREGSYEASKALLDNFAN------REITDHMDR 190

Query: 225 TALDVLLSFPSEAGDREIEEI 245
              DV     SE    +I  +
Sbjct: 191 LPRDV----ASERLHHDIVRL 207

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 84/287 (29%)

Query: 30  ENPLILHTPAFASAGN----------------------PLHVASAYGHVDFVKEIIRLKP 67
           E+P+ LHT    +AG+                       LH  ++    +  +++I  + 
Sbjct: 1   ESPIKLHT---EAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 68  DFAKE-------VNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAI 120
                       ++ D  +P+ +A    +  +V  LMK           ER      AA 
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 117

Query: 121 KGRVDVVSEMLSA--YGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILN 178
                ++  ML++       E++     T L +   N   + V +    +    K +   
Sbjct: 118 -RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 179 ---------------------------------------MKDKQGNTALHLATWKRECQV 199
                                                   +D+ G T + LA  +   +V
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 200 VELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF 246
           V  L+  GA+      V A + +  TA  +            I +IF
Sbjct: 237 VMYLIQQGAS------VEAVDATDHTARQLA----QANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 4e-11
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDV 171
           +T LH+AA    + +V  ++   G   +      +T + LA +  + EVV  L+     V
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 172 KKENILNMKDKQGNTALHLATWKRECQVVELLL 204
                    D   +TA  LA       +V++  
Sbjct: 248 ------EAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 45  NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMK 98
            P+ +A+  G ++ V  +I+      + V+    +   +A AN   ++V    +
Sbjct: 223 TPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.9 bits (138), Expect = 8e-11
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 10/160 (6%)

Query: 44  GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL 103
           G  L  A+  G  D V+ ++            D      +  A          +     +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAP----FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 104 CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA 163
                 +        A       + E+L  +G       + + T LH A ++N  EVV  
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL 203
           L+ +  DV      + + K   TA  ++       + E+L
Sbjct: 119 LIKYGADV------HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 76  DGFSPMH---MASANGQIDVVRGLMK----FDQKLCHLQGPER-KTPLHFAAI---KGRV 124
           D  + +H    A     I  +           +K+    G E  +T LH A     +  +
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQG 184
            +V + L       +  + +  T LH     +  E ++ L+        +  + + ++ G
Sbjct: 62  HIV-DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG------KASIEIANESG 114

Query: 185 NTALHLATWKRECQVVELLLSHGAN 209
            T L +A   +     ELL    + 
Sbjct: 115 ETPLDIAKRLKHEHCEELLTQALSG 139

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-06
 Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 3/122 (2%)

Query: 43  AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQK 102
           + + L  A+A G V+ V+ ++    +     +        M   + ++  +  L   +  
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 103 LCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVR 162
                   R              VV     A  +  +         + LA +    +V R
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA---WGRLPVDLAEELGHRDVAR 119

Query: 163 AL 164
            L
Sbjct: 120 YL 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-05
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 8/126 (6%)

Query: 80  PMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAE 139
            +  A+A G+++ VR L++         G     P  +     +V ++     A      
Sbjct: 6   WLATAAARGRVEEVRALLEA--------GANPNAPNSYGRRPIQVMMMGSARVAELLLLH 57

Query: 140 DVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQV 199
                      L    +       L   +   +    L+++D  G   + LA       V
Sbjct: 58  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 117

Query: 200 VELLLS 205
              L +
Sbjct: 118 ARYLRA 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 5/131 (3%)

Query: 79  SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECA 138
           + +  +S  G+ D+V+ ++                  +         V   +   +G   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNV 60

Query: 139 EDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQ 198
                   T LH A   N  +V + LV+    V     +   D Q          +   Q
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV---FAMTYSDMQTAADKCEEMEEGYTQ 117

Query: 199 VVELLLSHGAN 209
             + L      
Sbjct: 118 CSQFLYGVQEK 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	455
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.98
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=274.70  Aligned_cols=220  Identities=24%  Similarity=0.397  Sum_probs=201.9

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      .++.|+.+|++|+.+.++.+++.++......+ ..|+||||+|+..|+.+++++|++..... ...+..+.++++.|+..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D-~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcC-CCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence            46789999999999999999998887766554 35999999999999999999999998763 45577889999999999


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHH
Q 012836           88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW  167 (455)
Q Consensus        88 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  167 (455)
                      |+.+++++|++++.++ +.+|.+|.||||+|+..|+.++++.|+++ |.+++..+.+|.||||+|+..++.+++++|.+.
T Consensus        81 ~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            9999999999999987 88999999999999999999999999987 889999999999999999999999999999998


Q ss_pred             hhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHH
Q 012836          168 IRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFW  247 (455)
Q Consensus       168 g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~  247 (455)
                      +.++      +.+|.+|+||||+|+..|+.+++++|+++|+      +++.+|..|+||||+|     ..+..++++.|+
T Consensus       159 ~~~i------~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga------d~~~~d~~g~tpl~~A-----~~~~~~i~~~Ll  221 (223)
T d1uoha_         159 KAST------NIQDTEGNTPLHLACDEERVEEAKLLVSQGA------SIYIENKEEKTPLQVA-----KGGLGLILKRMV  221 (223)
T ss_dssp             TCCS------CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHC-----CTTHHHHHHHHH
T ss_pred             ccee------eeccCCCCceeccccccCcHHHHHHHHHCCC------CCCCCCCCCCCHHHHH-----HCCCHHHHhccc
Confidence            8776      8999999999999999999999999999999      8999999999999998     347888998887


Q ss_pred             H
Q 012836          248 S  248 (455)
Q Consensus       248 ~  248 (455)
                      +
T Consensus       222 ~  222 (223)
T d1uoha_         222 E  222 (223)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-35  Score=271.94  Aligned_cols=234  Identities=20%  Similarity=0.147  Sum_probs=181.5

Q ss_pred             ccCcccCHHHHHHHHcCCHHHHHHHHhcCCccc-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836            3 SYSTRMDRRLIAAALTGDVQTLQQLFVENPLIL-HTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM   81 (455)
Q Consensus         3 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   81 (455)
                      +.+++|+||||.||+.|+.++++.|++.+.+.. ....+..|+||||+|+..|+.+++++|++++.+ ++..|.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc-ccccccccchhh
Confidence            567899999999999999999999999865432 222334599999999999999999999999988 577899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCccccccC---------CCCCC---CHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHH
Q 012836           82 HMASANGQIDVVRGLMKFDQKLCHLQ---------GPERK---TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVL  149 (455)
Q Consensus        82 h~Aa~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~---tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L  149 (455)
                      |+|+..|+.++++.|++.........         +....   .++..............+....+..++..|.+|+|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            99999999999999998764431100         00111   1111111222222222333344566778899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHH
Q 012836          150 HLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDV  229 (455)
Q Consensus       150 h~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~  229 (455)
                      |+|+..++.+++++|++++.+.     .+.++..|.||||+|+..++.+++++|+++|+      +++.+|+.|+||||+
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga------din~~d~~g~t~L~~  231 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADL-----NKPEPTCGRTPLHLAVEAQAASVLELLLKAGA------DPTARMYGGRTPLGS  231 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHH
T ss_pred             cccccccccccccchhcccccc-----cccccccccccccccccccHHHHHHHHHHCCC------CCCCCCCCCCCHHHH
Confidence            9999999999999999988776     24567899999999999999999999999998      899999999999999


Q ss_pred             HhhCCCCcCchhHHHHHHHhccc
Q 012836          230 LLSFPSEAGDREIEEIFWSAGAM  252 (455)
Q Consensus       230 a~~~~~~~~~~~i~~~L~~~ga~  252 (455)
                      |+.    .++.+++++|+++||+
T Consensus       232 A~~----~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         232 ALL----RPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHT----SSCHHHHHHHHHTTCC
T ss_pred             HHH----CCCHHHHHHHHHcCCC
Confidence            974    4789999999999995

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-34  Score=261.14  Aligned_cols=224  Identities=21%  Similarity=0.291  Sum_probs=198.3

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc--hhhhcCCCCcHHHHHHH
Q 012836            9 DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF--AKEVNQDGFSPMHMASA   86 (455)
Q Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~Aa~   86 (455)
                      ++|||.||++|+.+.++.|++..+......+ ..|.||||+|+..|+.+++++|+++++++  ....+..|.+|+|+|+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccC-CCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            5799999999999999999998776655544 46999999999999999999999998653  34567889999999999


Q ss_pred             cCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHH
Q 012836           87 NGQIDVVRGLMKFDQKL-CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALV  165 (455)
Q Consensus        87 ~g~~~iv~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  165 (455)
                      .+..++++.++..+... ....+..+.+|++.++..++.++++.|+.. +...+..|.+|+||||+|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhccccccccccc
Confidence            99999999999887654 245667889999999999999999999987 8888889999999999999999999999999


Q ss_pred             HHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHh-cCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHH
Q 012836          166 DWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLS-HGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEE  244 (455)
Q Consensus       166 ~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~-~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~  244 (455)
                      +++..     .++.+|.+|+||||+|+..|+.+++++|++ .|+      +++.+|++|+||||+|.       +.++++
T Consensus       159 ~~~~~-----~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~ga------d~~~~d~~g~t~l~~A~-------~~~~~~  220 (229)
T d1ixva_         159 GLGKS-----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA------EYDLVDNKGAKAEDVAL-------NEQVKK  220 (229)
T ss_dssp             TTTCC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC------CSCCCCTTSCCTGGGCS-------CHHHHH
T ss_pred             ccccc-----cccccccccCCchhhhcccccHHHHHHHHHhcCC------CCCCcCCCCCCHHHHHh-------hHHHHH
Confidence            87632     258999999999999999999999999997 588      89999999999999984       458999


Q ss_pred             HHHHhccc
Q 012836          245 IFWSAGAM  252 (455)
Q Consensus       245 ~L~~~ga~  252 (455)
                      +|++.|++
T Consensus       221 ~Ll~~g~d  228 (229)
T d1ixva_         221 FFLNNVVD  228 (229)
T ss_dssp             HHHHHCCC
T ss_pred             HHHHcCCC
Confidence            99999984

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=6.6e-33  Score=260.46  Aligned_cols=221  Identities=24%  Similarity=0.291  Sum_probs=194.8

Q ss_pred             ccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHH
Q 012836            7 RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASA   86 (455)
Q Consensus         7 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~   86 (455)
                      .+.|+|+.||..|+.+.|+.|++++.+++..  +..|.||||+|+..|+.+++++|++++.+ ....+..+.+||++|+.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~--d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCcc--CCCCCcHHHHHHhcCCceeeeeecccccc-ccccccccccccccccc
Confidence            3568999999999999999999999776433  34599999999999999999999999987 46668889999999999


Q ss_pred             cCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcc--------------------------ccc
Q 012836           87 NGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGEC--------------------------AED  140 (455)
Q Consensus        87 ~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--------------------------~~~  140 (455)
                      .|+.++++.|++.+... ...|.++.+|+++|+..++.+.++.++...+..                          ...
T Consensus       116 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             ccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            99999999999999877 778999999999999999999999888654332                          234


Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccC
Q 012836          141 VSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATN  220 (455)
Q Consensus       141 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n  220 (455)
                      .+..|.||||+|+..|+.+++++|++.|+++      |.+|.+|+||||+|+..|+.+++++|+++|+      +++.+|
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di------n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga------dv~~~d  262 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDV------NIKDYDGWTPLHAAAHWGKEEACRILVENLC------DMEAVN  262 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCC
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceecc------cccccCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCcC
Confidence            5668899999999999999999999999887      8999999999999999999999999999999      899999


Q ss_pred             CCCCCHHHHHhhCCCCcCchhHHHHHHHhcc
Q 012836          221 HSGLTALDVLLSFPSEAGDREIEEIFWSAGA  251 (455)
Q Consensus       221 ~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga  251 (455)
                      +.|+||||+|.        ++++++|.+...
T Consensus       263 ~~G~TaL~~A~--------e~~~~~L~~~~~  285 (291)
T d1s70b_         263 KVGQTAFDVAD--------EDILGYLEELQK  285 (291)
T ss_dssp             TTSCCTTTSCC--------SGGGHHHHHHHH
T ss_pred             CCCCCHHHHHH--------HHHHHHHHHHhh
Confidence            99999999994        257777766554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.1e-31  Score=261.87  Aligned_cols=250  Identities=24%  Similarity=0.333  Sum_probs=168.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCC
Q 012836           10 RRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQ   89 (455)
Q Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~   89 (455)
                      ||||.||..|+.++|+.|++.+.++...  +..|+||||+|+..|+.+++++|++++.+ ++..|.+|+||||+|+..|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L~~A~~~g~   78 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGH   78 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTC
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCC
Confidence            7999999999999999999988765433  34589999999999999999999999987 57778999999999999999


Q ss_pred             HHHHHHHHhcCccc--------------------------------cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcc
Q 012836           90 IDVVRGLMKFDQKL--------------------------------CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGEC  137 (455)
Q Consensus        90 ~~iv~~Ll~~~~~~--------------------------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  137 (455)
                      .+++++|++...+.                                ....+.++.++++.|+..++.++++.|++. +.+
T Consensus        79 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~-~~~  157 (408)
T d1n11a_          79 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAH  157 (408)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             HHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            98888887643221                                122344455555555555555555555554 445


Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcc--------------------------------------------
Q 012836          138 AEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKK--------------------------------------------  173 (455)
Q Consensus       138 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~--------------------------------------------  173 (455)
                      ++..+.+|.+|||+|+..|+.+++++|+++|+++..                                            
T Consensus       158 ~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  237 (408)
T d1n11a_         158 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL  237 (408)
T ss_dssp             TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHH
Confidence            555555555555555555555555555544433210                                            


Q ss_pred             ----------------cccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCC--------------------------
Q 012836          174 ----------------ENILNMKDKQGNTALHLATWKRECQVVELLLSHGANAS--------------------------  211 (455)
Q Consensus       174 ----------------~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~--------------------------  211 (455)
                                      ....+..|..|.||||.|+..++.+++++|+++|++..                          
T Consensus       238 a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll  317 (408)
T d1n11a_         238 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL  317 (408)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             HHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeec
Confidence                            00123345556666666666666666666666554321                          


Q ss_pred             -CCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccc
Q 012836          212 -GGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNC  276 (455)
Q Consensus       212 -~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
                       .+.+++.+|.+|+||||+|++.    ++.+++++|+++||..         +.++..|.+|+...
T Consensus       318 ~~g~~in~~d~~G~T~Lh~A~~~----g~~~iv~~Ll~~GAd~---------n~~d~~G~t~L~~A  370 (408)
T d1n11a_         318 QHQADVNAKTKLGYSPLHQAAQQ----GHTDIVTLLLKNGASP---------NEVSSDGTTPLAIA  370 (408)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHTTCCS---------CCCCSSSCCHHHHH
T ss_pred             cccccccccCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCC---------CCCCCCCCCHHHHH
Confidence             1246778888888888888743    7888888888888853         34456677775444

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.1e-31  Score=246.32  Aligned_cols=231  Identities=26%  Similarity=0.296  Sum_probs=194.6

Q ss_pred             ccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc-----------------
Q 012836            7 RMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF-----------------   69 (455)
Q Consensus         7 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------   69 (455)
                      +++|.||.|++.||.++|+.|+++++++..... ..|.||||+|+..|+.++++.|++.+...                 
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~-~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCC-CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            467999999999999999999999987654433 35999999999999999999999876532                 


Q ss_pred             ---------------hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccc---------cccCCCCCCCHHHHHHHhCCHH
Q 012836           70 ---------------AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL---------CHLQGPERKTPLHFAAIKGRVD  125 (455)
Q Consensus        70 ---------------~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~  125 (455)
                                     ....+..|.++++.|+..|+...++.++....+.         ....+..|.||||+|+.+|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                           1223556778888888888888888888764432         1345567899999999999999


Q ss_pred             HHHHHHHhcCccccccccCCCcHHHHHHHcC----CHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHH
Q 012836          126 VVSEMLSAYGECAEDVSVQRETVLHLAVKNN----QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVE  201 (455)
Q Consensus       126 ~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~----~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~  201 (455)
                      ++++|+++.+.+++..+..|.++++.+...+    ..+++++|+++|+++      +.+|..|.||||.|+..|+.++++
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~------n~~~~~g~t~L~~a~~~~~~~~v~  236 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV------NVRGERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS------SCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC------CccCCCCCCccchhhhcCcHHHHH
Confidence            9999999888899999999998888766543    357899999988886      889999999999999999999999


Q ss_pred             HHHhc-CCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhccccc
Q 012836          202 LLLSH-GANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRM  254 (455)
Q Consensus       202 ~Ll~~-ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~  254 (455)
                      +|++. |+      +++.+|.+|.||||+|++.    ++.+++++|+++||.+.
T Consensus       237 ~lL~~~g~------din~~d~~G~TpL~~A~~~----~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         237 RLLEQEHI------EINDTDSDGKTALLLAVEL----KLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHSSSC------CTTCCCTTSCCHHHHHHHT----TCHHHHHHHHHHSSCSC
T ss_pred             HHHHcCCC------CCcCCCCCCCCHHHHHHHc----CCHHHHHHHHHCCCCCC
Confidence            99985 66      8999999999999999754    78999999999999754

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.6e-31  Score=239.92  Aligned_cols=207  Identities=24%  Similarity=0.285  Sum_probs=189.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhC
Q 012836           43 AGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKG  122 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g  122 (455)
                      .++.|+.+|..|+.+.++.+++..+...+.+|.+|+||||+||..|+.+++++|++.+... ...+..+.++++.++..|
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAG   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-cccccccccccccccccc
Confidence            4688999999999999999999988888999999999999999999999999999998887 667778999999999999


Q ss_pred             CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHH
Q 012836          123 RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVEL  202 (455)
Q Consensus       123 ~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~  202 (455)
                      +.+++++|+++ +.+++..|.+|+||||+|+..|+.+++++|+++|.++      +.+|..|.||||+|+..++.+++++
T Consensus        82 ~~~i~~~Ll~~-~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~------~~~~~~~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          82 RDEIVKALLGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP------DAKDHYEATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccchhHHHhcc-CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC------CCcCCCCCccchhhhhcCCcchhhh
Confidence            99999999998 7889999999999999999999999999999999887      8899999999999999999999999


Q ss_pred             HHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccccc
Q 012836          203 LLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNC  276 (455)
Q Consensus       203 Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
                      |++.|.      +++.+|..|+||||+|+..    ++.+++++|++.|+..         +.++..|.+|+...
T Consensus       155 L~~~~~------~i~~~d~~g~TpL~~Aa~~----g~~~~v~~LL~~Gad~---------~~~d~~g~tpl~~A  209 (223)
T d1uoha_         155 LLYYKA------STNIQDTEGNTPLHLACDE----ERVEEAKLLVSQGASI---------YIENKEEKTPLQVA  209 (223)
T ss_dssp             HHHTTC------CSCCCCTTCCCHHHHHHHT----TCHHHHHHHHHTTCCS---------CCCCTTSCCHHHHC
T ss_pred             hccccc------eeeeccCCCCceecccccc----CcHHHHHHHHHCCCCC---------CCCCCCCCCHHHHH
Confidence            999988      8999999999999999754    7889999999999854         34566777776544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=9.9e-33  Score=257.01  Aligned_cols=190  Identities=22%  Similarity=0.270  Sum_probs=130.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHH--------HcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCH
Q 012836           43 AGNPLHVASAYGHVDFVKEII--------RLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTP  114 (455)
Q Consensus        43 g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tp  114 (455)
                      |.||||+||..|+.++|+.|+        +.|.+ ++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~  110 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSA  110 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-ccccCCCCCeeecccccccccccccccccccccc-cccccccccc
Confidence            555555555555555554443        22333 3444555555555555555555555555555554 4455555555


Q ss_pred             HHHHHHhCCHHHHHHHHHh---------------------------------------c-------CccccccccCCCcH
Q 012836          115 LHFAAIKGRVDVVSEMLSA---------------------------------------Y-------GECAEDVSVQRETV  148 (455)
Q Consensus       115 Lh~A~~~g~~~~v~~Ll~~---------------------------------------~-------~~~~~~~~~~g~t~  148 (455)
                      ||.|+..++.++++.+...                                       .       ....+..+..|+|+
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            5555555555555444321                                       0       01122345578999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHH
Q 012836          149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD  228 (455)
Q Consensus       149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~  228 (455)
                      ||+++..++.+++++++....     ...+.+|..|+||||+|+..|+.+++++|+++|+      +++.+|.+|+||||
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~-----~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga------din~~d~~G~T~L~  259 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKG-----SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA------SVEAVDATDHTARQ  259 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSC-----CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC------CSSCCCSSSCCHHH
T ss_pred             ccccccccccccccccccccc-----ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC------CCCCcCCCCCCHHH
Confidence            999999999999998765322     2347899999999999999999999999999998      89999999999999


Q ss_pred             HHhhCCCCcCchhHHHHHHHh
Q 012836          229 VLLSFPSEAGDREIEEIFWSA  249 (455)
Q Consensus       229 ~a~~~~~~~~~~~i~~~L~~~  249 (455)
                      +|+.    .++.+++++|.++
T Consensus       260 ~A~~----~~~~~iv~lL~~c  276 (277)
T d2fo1e1         260 LAQA----NNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHH----TTCHHHHHHHHTT
T ss_pred             HHHH----cCCHHHHHHHHHh
Confidence            9975    4789999999864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=248.35  Aligned_cols=224  Identities=26%  Similarity=0.335  Sum_probs=174.4

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcc---------------
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDF---------------   69 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------------   69 (455)
                      +..+.++|+.|+..|+.++++.|++.+......  +..|.+|||+|+..|+.+++++|++++++.               
T Consensus       129 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~--~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~  206 (408)
T d1n11a_         129 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA  206 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCCCcC--CCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhh
Confidence            344555555555555555555555554433222  123555555555555555555555554331               


Q ss_pred             -----------------hhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHH
Q 012836           70 -----------------AKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS  132 (455)
Q Consensus        70 -----------------~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  132 (455)
                                       ....+..|.||||+|+..++.++++.+++.+... +..+..|.||++.|+..++.+++++|++
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~  285 (408)
T d1n11a_         207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIK  285 (408)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHH
Confidence                             2334566778888888888888888888877766 6778889999999999999999999998


Q ss_pred             hcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCC
Q 012836          133 AYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASG  212 (455)
Q Consensus       133 ~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~  212 (455)
                      + |.+++..+..+.||||.++..++.++++++++.|+++      |.+|.+|+||||+|++.|+.+++++|+++|+    
T Consensus       286 ~-g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i------n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA----  354 (408)
T d1n11a_         286 H-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV------NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA----  354 (408)
T ss_dssp             H-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----
T ss_pred             C-CCccccccccccccchhhcccCcceeeeeeccccccc------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----
Confidence            7 8888888889999999999999999999999988876      8999999999999999999999999999999    


Q ss_pred             CccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHH
Q 012836          213 GLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWS  248 (455)
Q Consensus       213 ~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~  248 (455)
                        +++.+|++|+||||+|.+    .++.+++++|..
T Consensus       355 --d~n~~d~~G~t~L~~A~~----~~~~~iv~~L~~  384 (408)
T d1n11a_         355 --SPNEVSSDGTTPLAIAKR----LGYISVTDVLKV  384 (408)
T ss_dssp             --CSCCCCSSSCCHHHHHHH----TTCHHHHHHHHH
T ss_pred             --CCCCCCCCCCCHHHHHHH----cCCHHHHHHHHH
Confidence              899999999999999975    478899988754

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=233.35  Aligned_cols=196  Identities=23%  Similarity=0.255  Sum_probs=165.8

Q ss_pred             CCChHHHHHHHcCCHHHHHH----HHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHH
Q 012836           42 SAGNPLHVASAYGHVDFVKE----IIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHF  117 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~----Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  117 (455)
                      +|+||||+|+..|+.++++.    +...+.+ ++..|.+|+||||+|+..|+.+++++|++.++++ +.+|.+|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCccccccccccccccccccccccccc-ccccccccccccc
Confidence            38999999999999755554    4445555 5778999999999999999999999999999998 8899999999999


Q ss_pred             HHHhCCHHHHHHHHHhcCc-----cccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccc-cCCCCCcHHHHH
Q 012836          118 AAIKGRVDVVSEMLSAYGE-----CAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNM-KDKQGNTALHLA  191 (455)
Q Consensus       118 A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-~d~~G~T~Lh~A  191 (455)
                      |+..|+.++++.|+.....     ........|.||||.|+..++.++++++++.|...      +. .+.+|+||||+|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~------~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV------NAQEPCNGRTALHLA  152 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT------TCCCTTTCCCHHHHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccc------ccccccCCCCccccc
Confidence            9999999999999986322     22334456899999999999999999999987765      44 456899999999


Q ss_pred             HhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccc
Q 012836          192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMR  255 (455)
Q Consensus       192 ~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~  255 (455)
                      +..|+.+++++|+++|+      |++.+|.+|+||||+|+    ..+..+++++|.+.+.....
T Consensus       153 ~~~g~~~~v~~Ll~~ga------d~~~~~~~G~tpl~~A~----~~~~~~~~~~l~~~~~~~~~  206 (221)
T d1iknd_         153 VDLQNPDLVSLLLKCGA------DVNRVTYQGYSPYQLTW----GRPSTRIQQQLGQLTLENLQ  206 (221)
T ss_dssp             HHTTCHHHHHHHHTTTC------CSCCCCTTCCCGGGGCT----TSSCHHHHHHHHTTSCGGGS
T ss_pred             cccccHHHHHHHHhcCC------cccccCCCCCCHHHHHH----HCCCHHHHHHHHHcCCcccc
Confidence            99999999999999998      89999999999999995    45789999999998776443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.5e-29  Score=224.50  Aligned_cols=211  Identities=26%  Similarity=0.307  Sum_probs=183.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccc--cccCCCCCCCHHHHHHHh
Q 012836           44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKL--CHLQGPERKTPLHFAAIK  121 (455)
Q Consensus        44 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~  121 (455)
                      +||||+||..|+.++++.|++.++...+.+|.+|+||||+|+..|+.+++++|+++++++  ....+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            489999999999999999999888788999999999999999999999999999998765  345778899999999999


Q ss_pred             CCHHHHHHHHHhcC-ccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHH
Q 012836          122 GRVDVVSEMLSAYG-ECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVV  200 (455)
Q Consensus       122 g~~~~v~~Ll~~~~-~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv  200 (455)
                      +..++++.++.... ......+..+.|+++.++..++.+++++|++.|.+.      +.+|..|+||||+|+..|+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~------~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV------RIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS------CCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc------cccCCCCCCccchhhhccccccc
Confidence            99999998887622 234456678899999999999999999999988776      78899999999999999999999


Q ss_pred             HHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHH-hcccccccCCCCCCCCCCCCCCCccccccc
Q 012836          201 ELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWS-AGAMRMRDLTLSPIRSPEPHGQTSVDNCIS  278 (455)
Q Consensus       201 ~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (455)
                      ++|++.|..     +++.+|.+|+||||+|+.    .++.+++++|++ .|+..         ..++..|.+|++...+
T Consensus       155 ~~Ll~~~~~-----~in~~d~~g~TpLh~A~~----~~~~~~v~~Ll~~~gad~---------~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         155 ELLCGLGKS-----AVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEY---------DLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HHHHTTTCC-----CSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCS---------CCCCTTSCCTGGGCSC
T ss_pred             ccccccccc-----cccccccccCCchhhhcc----cccHHHHHHHHHhcCCCC---------CCcCCCCCCHHHHHhh
Confidence            999998753     789999999999999975    478999999996 58843         3456678888776553

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.9e-29  Score=220.88  Aligned_cols=219  Identities=20%  Similarity=0.184  Sum_probs=186.8

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHh----cCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHH
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFV----ENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPM   81 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL   81 (455)
                      ++|+||||.||.+|+.++++.|++    .+.++. .. +..|.||||+|+..|+.++++.|++++.. .+..+..|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~-d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IY-NNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-cc-CCCCCccceehhccccccccccccccccc-cccccccccccc
Confidence            469999999999999999999986    333332 22 34599999999999999999999999877 566788899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCccc---cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCH
Q 012836           82 HMASANGQIDVVRGLMKFDQKL---CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF  158 (455)
Q Consensus        82 h~Aa~~g~~~iv~~Ll~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~  158 (455)
                      +.|...++.++++.+.......   .+.......++||.+.........+.|...........+..+.++|+.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            9999999999999887754332   2345567789999999999999999998886666666777899999999999999


Q ss_pred             HHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcC
Q 012836          159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG  238 (455)
Q Consensus       159 ~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~  238 (455)
                      ++++.+++.|.+.      +.+|..|+||||+|+..|+.+++++|+++|+      +++.+|.+|+||||+|+    ..+
T Consensus       158 ~~~~~~~~~~~~~------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga------d~n~~d~~G~TpL~~A~----~~~  221 (228)
T d1k1aa_         158 SMVQLLLQHGANV------NAQMYSGSSALHSASGRGLLPLVRTLVRSGA------DSSLKNCHNDTPLMVAR----SRR  221 (228)
T ss_dssp             HHHHHHHHTTCCT------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCTTTTCS----SHH
T ss_pred             hhhhhhhhhcccc------ccccccCcchHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHH----hCC
Confidence            9999999987765      8899999999999999999999999999999      89999999999999995    334


Q ss_pred             chhHH
Q 012836          239 DREIE  243 (455)
Q Consensus       239 ~~~i~  243 (455)
                      +.+++
T Consensus       222 ~~div  226 (228)
T d1k1aa_         222 VIDIL  226 (228)
T ss_dssp             HHHHH
T ss_pred             Ccccc
Confidence            44544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=2.1e-29  Score=234.24  Aligned_cols=191  Identities=19%  Similarity=0.200  Sum_probs=166.6

Q ss_pred             cccCHHHHHHHHcCCHHHHHHHHh--------cCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCC
Q 012836            6 TRMDRRLIAAALTGDVQTLQQLFV--------ENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDG   77 (455)
Q Consensus         6 ~~~~t~L~~A~~~g~~~~v~~Ll~--------~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   77 (455)
                      ..|.||||.||..|+.++++.|+.        .|.+++..  +..|+||||+|+..|+.+++++|+++|++ ++.+|.+|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~--d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g  107 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSE  107 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc--CCCCCeeeccccccccccccccccccccc-cccccccc
Confidence            358999999999999999988764        34444432  34699999999999999999999999988 57779999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCc----------------------------------------------cccccCCCCC
Q 012836           78 FSPMHMASANGQIDVVRGLMKFDQ----------------------------------------------KLCHLQGPER  111 (455)
Q Consensus        78 ~tpLh~Aa~~g~~~iv~~Ll~~~~----------------------------------------------~~~~~~d~~g  111 (455)
                      .||||+|+..++.++++.+.....                                              ......+..|
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            999999999999999887765310                                              0013456678


Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHH
Q 012836          112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA  191 (455)
Q Consensus       112 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A  191 (455)
                      .||||.++..++.+++++++...+.+.+..|..|+||||+|++.|+.+++++|+++|+++      |.+|.+|+||||+|
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi------n~~d~~G~T~L~~A  261 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV------EAVDATDHTARQLA  261 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------SCCCSSSCCHHHHH
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC------CCcCCCCCCHHHHH
Confidence            999999999999999999998889999999999999999999999999999999999887      99999999999999


Q ss_pred             HhcCChHHHHHHHh
Q 012836          192 TWKRECQVVELLLS  205 (455)
Q Consensus       192 ~~~~~~~iv~~Ll~  205 (455)
                      ++.|+.+++++|++
T Consensus       262 ~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         262 QANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHH
Confidence            99999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=4.8e-28  Score=226.96  Aligned_cols=239  Identities=22%  Similarity=0.246  Sum_probs=198.5

Q ss_pred             HcCCHHHHHHHHhcCCcccCCCCC-------CCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCC
Q 012836           17 LTGDVQTLQQLFVENPLILHTPAF-------ASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQ   89 (455)
Q Consensus        17 ~~g~~~~v~~Ll~~~~~~~~~~~~-------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~   89 (455)
                      +....+.++.++............       ..+.|+|+.||..|+.++|++|+++|++ ++..|.+|+||||+|+..|+
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~   85 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDN   85 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCC
Confidence            344457777777765443322211       1256999999999999999999999988 67889999999999999999


Q ss_pred             HHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhh
Q 012836           90 IDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIR  169 (455)
Q Consensus        90 ~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~  169 (455)
                      .+++++|++++.+. ...+..+.+||+.|+..|+.++++.|++. +...+..|..+.+++++|+..+..+.++.++....
T Consensus        86 ~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~  163 (291)
T d1s70b_          86 VDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (291)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             ceeeeeeccccccc-ccccccccccccccccccccchhhccccc-CcccccccccCccccccccccccchhccccccccc
Confidence            99999999999887 77788999999999999999999999987 78888899999999999999999999988876421


Q ss_pred             h-hc--------------------ccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHH
Q 012836          170 D-VK--------------------KENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALD  228 (455)
Q Consensus       170 ~-~~--------------------~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~  228 (455)
                      . ..                    ........+..|.||||+|+..|+.+++++|++.|+      +++.++..|.||||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~------din~~~~~g~TpL~  237 (291)
T d1s70b_         164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYDGWTPLH  237 (291)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC------CTTCCCTTCCCHHH
T ss_pred             cccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccccee------cccccccCCCCHHH
Confidence            1 10                    012235578899999999999999999999999998      88999999999999


Q ss_pred             HHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCcccccc
Q 012836          229 VLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVDNCI  277 (455)
Q Consensus       229 ~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (455)
                      +|+..    ++.+++++|+++|++.         +.++..|++|++...
T Consensus       238 ~A~~~----g~~~iv~lLl~~Gadv---------~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         238 AAAHW----GKEEACRILVENLCDM---------EAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHHHT----TCHHHHHHHHHTTCCT---------TCCCTTSCCTTTSCC
T ss_pred             HHHHc----CCHHHHHHHHHCCCCC---------CCcCCCCCCHHHHHH
Confidence            99754    7899999999999954         345667888876664

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-29  Score=227.68  Aligned_cols=193  Identities=20%  Similarity=0.213  Sum_probs=164.9

Q ss_pred             ccCHHHHHHHHcCCHHHHHHHHh----cCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836            7 RMDRRLIAAALTGDVQTLQQLFV----ENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus         7 ~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      +|+||||.|+..|+.+.++.+++    .+..++.  .+..|+||||+|+..|+.+++++|++.+.+ .+..|..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~--~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF--QNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC--CCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCccc--CCCCCCcccccccccccccccccccccccc-ccccccccccccc
Confidence            58999999999999766665554    3443332  233699999999999999999999999988 5778999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCccc-----cccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCcccccc-ccCCCcHHHHHHHcC
Q 012836           83 MASANGQIDVVRGLMKFDQKL-----CHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDV-SVQRETVLHLAVKNN  156 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~Lh~A~~~~  156 (455)
                      +|+..|+.++++.|++.+...     ......+|.||||.|+..++.+++++|+.. +...+.. +.+|+||||+|++.|
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc-CcccccccccCCCCccccccccc
Confidence            999999999999999875432     244566789999999999999999999988 5555544 567999999999999


Q ss_pred             CHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCC
Q 012836          157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGAN  209 (455)
Q Consensus       157 ~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~  209 (455)
                      +.+++++|+++|+++      +.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus       157 ~~~~v~~Ll~~gad~------~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         157 NPDLVSLLLKCGADV------NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CHHHHHHHHTTTCCS------CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cHHHHHHHHhcCCcc------cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999887      99999999999999999999999999998763

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.9e-28  Score=216.97  Aligned_cols=207  Identities=22%  Similarity=0.272  Sum_probs=184.6

Q ss_pred             HHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 012836           21 VQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFD  100 (455)
Q Consensus        21 ~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~  100 (455)
                      .|+|+.|+++++++....+ ..|.||||+||..|+.+++++|++.++. ++..+..+.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d-~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMD-KTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcC-CCCCCHHHHHHHcCCHHHHHHHHhhccc-ccccccccccccccccccccccccccccccc
Confidence            4899999999988654332 3499999999999999999999999987 5778999999999999999999888887776


Q ss_pred             ccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhccccccccc
Q 012836          101 QKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMK  180 (455)
Q Consensus       101 ~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  180 (455)
                      ..........|.++.+.+.........+.|... +.+++..+..|+|||++++..+..++++.+++.+.++      +.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~------~~~  152 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR------DAQ  152 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT------TCC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeeccccccc------ccc
Confidence            666566677889999999999998888888876 8889999999999999999999999999999988776      889


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHH
Q 012836          181 DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIF  246 (455)
Q Consensus       181 d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L  246 (455)
                      |.+|+||||+|+..|+.+++++|+++|+      +++.+|..|+||||+|++    .++.+++++|
T Consensus       153 d~~g~TpL~~A~~~g~~~~v~~Ll~~ga------d~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         153 DDKDETPLFLAAREGSYEASKALLDNFA------NREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             ccccccccchhccccHHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence            9999999999999999999999999999      899999999999999975    4888999886

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.9e-28  Score=223.07  Aligned_cols=198  Identities=19%  Similarity=0.194  Sum_probs=148.6

Q ss_pred             cccCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhh--------
Q 012836            2 TSYSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEV--------   73 (455)
Q Consensus         2 t~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~--------   73 (455)
                      +..+..|+||||.|+..|+.++++.|++.+.+....  +..|.||||+|+..|+.++++.|++.........        
T Consensus        39 ~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~--d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  116 (255)
T d1oy3d_          39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA--ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS  116 (255)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------
T ss_pred             cCcCCCCCCccchHHhhccccccccccccccccccc--ccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHH
Confidence            345678999999999999999999999998765443  3359999999999999999999998764321110        


Q ss_pred             -cCCCCcHHHHHHH---cCCHHHHHHHH-hcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcH
Q 012836           74 -NQDGFSPMHMASA---NGQIDVVRGLM-KFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETV  148 (455)
Q Consensus        74 -~~~g~tpLh~Aa~---~g~~~iv~~Ll-~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~  148 (455)
                       +..+.+.+..+..   .........+. ..+.. .+.+|.+|.||||+|+..|+.+++++|++.........+..|.||
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~Tp  195 (255)
T d1oy3d_         117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP  195 (255)
T ss_dssp             ---------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             hhhcccchHHHHHHHhhcchhHHHHHHhhhcCcc-cccccccCcccccccccccccccccchhccccccccccccccccc
Confidence             1111111111111   11111111111 12233 367899999999999999999999999998444444557789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          149 LHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       149 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      ||+|++.|+.+++++|+++|+++      +.+|..|+||||+|+..++.+++++|+++||
T Consensus       196 L~~A~~~~~~~~v~~Ll~~gadi------n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         196 LHLAVEAQAASVLELLLKAGADP------TARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             ccccccccHHHHHHHHHHCCCCC------CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999999887      8999999999999999999999999999999

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=202.40  Aligned_cols=154  Identities=23%  Similarity=0.289  Sum_probs=140.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCH
Q 012836           45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV  124 (455)
Q Consensus        45 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  124 (455)
                      +|||+||..|+.++|+.|++++.+ ++..|.+|.||||+|+ .|+.+++++|+++++++ +.++..|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-cCccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            899999999999999999999988 5778999999999886 78999999999999987 88899999999999999999


Q ss_pred             HHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836          125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL  204 (455)
Q Consensus       125 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  204 (455)
                      +.++.|+.. +...+..+..|.+|||+|+..++.+++++|+++++.     ..+.+|.+|+||||+|+..++.+++++|+
T Consensus        80 ~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_          80 DTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccc-cccccccccccccccccccccccccccccccccccc-----cccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999886 777888899999999999999999999999998762     13889999999999999999999999999


Q ss_pred             hcC
Q 012836          205 SHG  207 (455)
Q Consensus       205 ~~g  207 (455)
                      ++|
T Consensus       154 ~~G  156 (156)
T d1ihba_         154 ANG  156 (156)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.8e-27  Score=197.46  Aligned_cols=152  Identities=24%  Similarity=0.300  Sum_probs=116.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCH
Q 012836           45 NPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRV  124 (455)
Q Consensus        45 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~  124 (455)
                      +.||.||..|+.++|++|++.++..++..|..|+||||+|+ .|+.+++++|++.+.++ +..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            44788888888888888887755556777778888888775 47778888888877776 66777788888888888888


Q ss_pred             HHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836          125 DVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL  204 (455)
Q Consensus       125 ~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  204 (455)
                      ++++.++++ +.+++..|..|+||||+|++.|+.+++++|+ .|+++      +.+|.+|+||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~l~~-~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~------~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          82 DTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL------HRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT------TCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             ccccccccc-ccccccccCCCCeeecccccccccccccccc-ccccc------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            888888876 5667777778888888888888888888776 45554      777888888888888888888888887


Q ss_pred             hc
Q 012836          205 SH  206 (455)
Q Consensus       205 ~~  206 (455)
                      ++
T Consensus       154 ~h  155 (156)
T d1bd8a_         154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            64

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.2e-26  Score=210.23  Aligned_cols=203  Identities=18%  Similarity=0.197  Sum_probs=169.8

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCC-------------------------------CCCCCCChHHHHHHHc
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHT-------------------------------PAFASAGNPLHVASAY   53 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------------------------------~~~~~g~t~Lh~A~~~   53 (455)
                      +..|.||||.|+..|+.++++.|++.++.....                               .....+.|+|+.|+..
T Consensus        36 ~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  115 (285)
T d1wdya_          36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHh
Confidence            456899999999999999999999876532111                               1122377999999999


Q ss_pred             CCHHHHHHHHHcCCcc---------hhhhcCCCCcHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCCCHHHHHHHhC-
Q 012836           54 GHVDFVKEIIRLKPDF---------AKEVNQDGFSPMHMASANGQIDVVRGLMKF-DQKLCHLQGPERKTPLHFAAIKG-  122 (455)
Q Consensus        54 g~~~~v~~Ll~~~~~~---------~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g-  122 (455)
                      |+...++.+++...+.         ....+..|.||||+|+..|+.+++++|+++ +.++ +..+..|.++++.+...+ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~  194 (285)
T d1wdya_         116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSD  194 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSC
T ss_pred             cchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCccccccccccc
Confidence            9999999998765432         234467799999999999999999999976 5555 788899999888876543 


Q ss_pred             ---CHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHH-hhhhcccccccccCCCCCcHHHHHHhcCChH
Q 012836          123 ---RVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW-IRDVKKENILNMKDKQGNTALHLATWKRECQ  198 (455)
Q Consensus       123 ---~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~  198 (455)
                         ..+++++|+++ |.+++..|.+|+||||.|++.|+.+++++|++. |.++      |.+|.+|+||||+|++.|+.+
T Consensus       195 ~~~~~~i~~~Li~~-ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~di------n~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         195 DSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI------NDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             TTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT------TCCCTTSCCHHHHHHHTTCHH
T ss_pred             chHHHHHHHHHHHC-CCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCC------cCCCCCCCCHHHHHHHcCCHH
Confidence               45789999987 888999999999999999999999999999984 5565      899999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCccccccCC
Q 012836          199 VVELLLSHGANASGGLEVNATNH  221 (455)
Q Consensus       199 iv~~Ll~~ga~~~~~v~~~~~n~  221 (455)
                      ++++|+++||      ++|++|.
T Consensus       268 iv~~Ll~~GA------d~n~~d~  284 (285)
T d1wdya_         268 IAELLCKRGA------STDCGDL  284 (285)
T ss_dssp             HHHHHHHHSS------CSCCSSC
T ss_pred             HHHHHHHCCC------CCCcccC
Confidence            9999999999      7887763

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=7.4e-26  Score=201.17  Aligned_cols=190  Identities=21%  Similarity=0.257  Sum_probs=172.5

Q ss_pred             cCcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHH
Q 012836            4 YSTRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHM   83 (455)
Q Consensus         4 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~   83 (455)
                      .|..|+||||.||..|+.++++.|++.++......  ..+.++++.++..++.+...................|.++.+.
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQD--NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLIL   96 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC--TTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence            36789999999999999999999999887765433  3589999999999999988888877766566667789999999


Q ss_pred             HHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHH
Q 012836           84 ASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRA  163 (455)
Q Consensus        84 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~  163 (455)
                      +.........+.|.+.+.+. +.++..|.|||+.++..+..++++.++.. +.+++..|..|.||||+|+..|+.+++++
T Consensus        97 ~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A~~~g~~~~v~~  174 (209)
T d1ot8a_          97 AARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLFLAAREGSYEASKA  174 (209)
T ss_dssp             HHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeeccc-cccccccccccccccchhccccHHHHHHH
Confidence            99999999999999999887 77899999999999999999999999998 78889999999999999999999999999


Q ss_pred             HHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHH
Q 012836          164 LVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL  203 (455)
Q Consensus       164 Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  203 (455)
                      |+++|+++      +.+|.+|+||||+|++.|+.+++++|
T Consensus       175 Ll~~gad~------n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         175 LLDNFANR------EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCCC------CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999987      89999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-26  Score=194.50  Aligned_cols=154  Identities=26%  Similarity=0.420  Sum_probs=144.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCH
Q 012836           79 SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF  158 (455)
Q Consensus        79 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~  158 (455)
                      +|||+||..|+.++|+.|+++|+++ +.+|.+|.||||+|+ .|+.++++.|+++ +.+++..+.+|.++|+.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccc-ccccccccccCccccccccccccc
Confidence            8999999999999999999999998 889999999999886 7999999999987 888999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcC
Q 012836          159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAG  238 (455)
Q Consensus       159 ~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~  238 (455)
                      +.++.+++++.+.      +..|..|.+|||+|+..++.+++++|+++|+.     +.+.+|.+|+||||+|+..    +
T Consensus        80 ~~~~~l~~~~~~~------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~TpL~~A~~~----~  144 (156)
T d1ihba_          80 DTLQTLLEFQADV------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLY----G  144 (156)
T ss_dssp             HHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC-----CTTCCCTTSCCHHHHHHHT----T
T ss_pred             ccccccccccccc------cccccccccccccccccccccccccccccccc-----cccccCCCCCCHHHHHHHc----C
Confidence            9999999988776      88999999999999999999999999999873     7889999999999999754    7


Q ss_pred             chhHHHHHHHhc
Q 012836          239 DREIEEIFWSAG  250 (455)
Q Consensus       239 ~~~i~~~L~~~g  250 (455)
                      +.+++++|+++|
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            899999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.8e-26  Score=190.91  Aligned_cols=150  Identities=27%  Similarity=0.376  Sum_probs=120.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCC
Q 012836           44 GNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGR  123 (455)
Q Consensus        44 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~  123 (455)
                      .||||.||+.|+.++|+.|++++++. . .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            47888888888888888888887763 2 4778888888888888888888888776665 5556677788888888888


Q ss_pred             HHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHH
Q 012836          124 VDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELL  203 (455)
Q Consensus       124 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~L  203 (455)
                      .+.++.++.. +.+.+..|.+|+||||+|+..|+.+++++|++.|+++      +.+|.+|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~------~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeeccccc-CCccccccccCchHHHhhhhcchhheeeeccccccCC------cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            8888877776 6677778888888888888888888888888888776      77888888888888888888888765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=9.7e-28  Score=230.69  Aligned_cols=198  Identities=17%  Similarity=0.165  Sum_probs=147.1

Q ss_pred             CcccCHHHHHHHHcCCHHHHHH---HHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhh-hcCCCCcH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQ---LFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKE-VNQDGFSP   80 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~tp   80 (455)
                      +..+.|+||.|+++|+.+.++.   |++.+..+...  +..|.||||+||..||.++|++|++.+++.... .+.+|+||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~--~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI--QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            5578899999999999887766   56666554332  235899999999999999999999999874322 24569999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCcccc--ccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccc----------------
Q 012836           81 MHMASANGQIDVVRGLMKFDQKLC--HLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVS----------------  142 (455)
Q Consensus        81 Lh~Aa~~g~~~iv~~Ll~~~~~~~--~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~----------------  142 (455)
                      ||+||..|+.++|++|++.+++..  +..+.++.||+|.|+.+|+.+++++|++. |.+++..+                
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HHHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC-CCCcchHHHHHHHcCcHhhhHHHH
Confidence            999999999999999999987642  33455677888999999999999999875 32221100                


Q ss_pred             ---------------------------------cCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHH
Q 012836          143 ---------------------------------VQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALH  189 (455)
Q Consensus       143 ---------------------------------~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh  189 (455)
                                                       ..+.++|+.|+..+..+++++|++.+... .....+..+.+|+||||
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~-~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK-ALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTG-GGSSCCSSTTCCCHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChh-hhcccccCCCCCCcHHH
Confidence                                             01235677777788888888888765432 11123455677889999


Q ss_pred             HHHhcCChHHHHHHHhc
Q 012836          190 LATWKRECQVVELLLSH  206 (455)
Q Consensus       190 ~A~~~~~~~iv~~Ll~~  206 (455)
                      +|++.|+.+++++|++.
T Consensus       323 lA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         323 LALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHTCTTHHHHHTTS
T ss_pred             HHHHcCcHHHHHHHhCC
Confidence            99999999999999864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=190.04  Aligned_cols=153  Identities=22%  Similarity=0.318  Sum_probs=136.4

Q ss_pred             CHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcC
Q 012836            9 DRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANG   88 (455)
Q Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g   88 (455)
                      ...|+.||..|+.+.|+.|+++++......+ ..|.||||+|+ .|+.+++++|++.+.+ .+..+..|.+|++.++..+
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d-~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-TTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccC-CCCCccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            3459999999999999999998665444433 45999999987 4899999999999887 5777889999999999999


Q ss_pred             CHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHH
Q 012836           89 QIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDW  167 (455)
Q Consensus        89 ~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  167 (455)
                      +.++++.+++++.++ +.+|.+|.||||+|+..|+.+++++|+.  +.+++..|.+|+||||+|++.|+.+++++|+++
T Consensus        80 ~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccc-ccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999987 7889999999999999999999998874  678899999999999999999999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7e-24  Score=188.90  Aligned_cols=211  Identities=25%  Similarity=0.248  Sum_probs=178.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHH----cCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHH
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIR----LKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHF  117 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~  117 (455)
                      +|+||||+||..|+.++++.|++    .+.+ ++.+|..|+||||+|+..|+.++++.|++.+++. +..+.+|.++++.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   79 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL   79 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhcccccccccccccccccc-ccccccccccccc
Confidence            49999999999999999999986    4555 5778999999999999999999999999999887 7788899999999


Q ss_pred             HHHhCCHHHHHHHHHhcCc---cccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhc
Q 012836          118 AAIKGRVDVVSEMLSAYGE---CAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWK  194 (455)
Q Consensus       118 A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~  194 (455)
                      |...++.++++.+......   ..+.......++||.+.........+.+.....+.     ....+..|.++||.|+..
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~a~~~  154 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-----DAVDIKSGRSPLIHAVEN  154 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----TCCCTTTCCCHHHHHHHT
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccc-----ccccccchhhHHHHHHHh
Confidence            9999999999888775322   22344567789999999999999999888754443     356778899999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHhhCCCCcCchhHHHHHHHhcccccccCCCCCCCCCCCCCCCccc
Q 012836          195 RECQVVELLLSHGANASGGLEVNATNHSGLTALDVLLSFPSEAGDREIEEIFWSAGAMRMRDLTLSPIRSPEPHGQTSVD  274 (455)
Q Consensus       195 ~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~  274 (455)
                      +..++++.++++|.      +.+.+|..|.|||++|+.    .++.+++++|+++|++.         +.++..|.+|+.
T Consensus       155 ~~~~~~~~~~~~~~------~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~Gad~---------n~~d~~G~TpL~  215 (228)
T d1k1aa_         155 NSLSMVQLLLQHGA------NVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADS---------SLKNCHNDTPLM  215 (228)
T ss_dssp             TCHHHHHHHHHTTC------CTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCT---------TCCCTTSCCTTT
T ss_pred             hhhhhhhhhhhhcc------ccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCC---------CCCCCCCCCHHH
Confidence            99999999999988      788999999999999975    47899999999999854         345677888876


Q ss_pred             cccc
Q 012836          275 NCIS  278 (455)
Q Consensus       275 ~~~~  278 (455)
                      ...+
T Consensus       216 ~A~~  219 (228)
T d1k1aa_         216 VARS  219 (228)
T ss_dssp             TCSS
T ss_pred             HHHh
Confidence            5543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=9.4e-25  Score=184.15  Aligned_cols=151  Identities=21%  Similarity=0.350  Sum_probs=137.7

Q ss_pred             cCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHc
Q 012836            8 MDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASAN   87 (455)
Q Consensus         8 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~   87 (455)
                      +.|||+.||+.|+.++++.||++++...   .+..|.||||+|+..++.++++.++...... ...+..+.++++.++..
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc---cccCCCccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            3599999999999999999999988654   2345999999999999999999999887663 55577889999999999


Q ss_pred             CCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHH
Q 012836           88 GQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRAL  164 (455)
Q Consensus        88 g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  164 (455)
                      .+.++++++...+.+. ..+|.+|.||||+|+..|+.+++++|++. |.+++..|.+|+||||+|+.+|+.+++++|
T Consensus        78 ~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~-gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeecccc-ccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999887 78899999999999999999999999987 899999999999999999999999999976

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.3e-25  Score=209.90  Aligned_cols=178  Identities=19%  Similarity=0.197  Sum_probs=114.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCH-------HHHHHHHhcCccccccCCCCCC
Q 012836           40 FASAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQI-------DVVRGLMKFDQKLCHLQGPERK  112 (455)
Q Consensus        40 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~-------~iv~~Ll~~~~~~~~~~d~~g~  112 (455)
                      +..|+||||+||..|+.++|+.|++++++ ++.+|..|+||||.||..++.       ++++++..    .....|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhcccccC
Confidence            34588888888888888888888888877 466788888888888876652       33333322    2255677888


Q ss_pred             CHHHHHHHhCC----HH--------HHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhccccccccc
Q 012836          113 TPLHFAAIKGR----VD--------VVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMK  180 (455)
Q Consensus       113 tpLh~A~~~g~----~~--------~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  180 (455)
                      ||||.++..+.    ..        ++..++.............+.++++.+........++.+... .  .....+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~in~~  255 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK-W--IIANMLNAQ  255 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH-H--HHHHTTTCC
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhH-H--HHhcCccCC
Confidence            88888776543    22        223344443333344445556666666555554444332110 0  112336899


Q ss_pred             CCCCCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          181 DKQGNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       181 d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                      |.+|+||||+|++.|+.+++++|+++|+      +++.+|+.|.||||+|+
T Consensus       256 D~~G~TpLh~A~~~g~~~iv~~Ll~~GA------d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIVDALLDYGA------DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHHTTC------CTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHcC
Confidence            9999999999999999999999999999      89999999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=2.3e-26  Score=220.95  Aligned_cols=201  Identities=14%  Similarity=0.115  Sum_probs=153.9

Q ss_pred             CCChHHHHHHHcCCHHHHHH---HHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCC--CCCCCHHH
Q 012836           42 SAGNPLHVASAYGHVDFVKE---IIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQG--PERKTPLH  116 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--~~g~tpLh  116 (455)
                      .|.||||+||.+|+.++++.   |++.+.+ ++..|.+|+||||+||..|+.++|++|++.+++. +..+  .+|.||||
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFR  166 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhH
Confidence            48899999999999887766   6777776 6778999999999999999999999999999887 4443  46899999


Q ss_pred             HHHHhCCHHHHHHHHHhcCcc--ccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccc-------------------
Q 012836          117 FAAIKGRVDVVSEMLSAYGEC--AEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKEN-------------------  175 (455)
Q Consensus       117 ~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~-------------------  175 (455)
                      +|+..||.+++++|++..+..  .+..+.++.||+|.|+.+|+.+++++|++.|++.....                   
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  246 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHV  246 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhh
Confidence            999999999999999973322  23344567788899999999999999999887642110                   


Q ss_pred             --------cccccCCC----------------CCcHHHHHHhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHHh
Q 012836          176 --------ILNMKDKQ----------------GNTALHLATWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVLL  231 (455)
Q Consensus       176 --------~~~~~d~~----------------G~T~Lh~A~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a~  231 (455)
                              .+.....+                +.++|+.|+..++.+++++|++.+.... ..+.+..+.+|+||||+|+
T Consensus       247 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~-~~~~~~~~~~g~T~LhlA~  325 (346)
T d2ajaa1         247 NRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA-LAPTATIPGDANELLRLAL  325 (346)
T ss_dssp             HHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGG-GSSCCSSTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhh-hcccccCCCCCCcHHHHHH
Confidence                    01111111                2368888888999999999999886321 1133455678999999997


Q ss_pred             hCCCCcCchhHHHHHHHh
Q 012836          232 SFPSEAGDREIEEIFWSA  249 (455)
Q Consensus       232 ~~~~~~~~~~i~~~L~~~  249 (455)
                      +    .|+.+++++|++.
T Consensus       326 ~----~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         326 R----LGNQGACALLLSI  339 (346)
T ss_dssp             H----HTCTTHHHHHTTS
T ss_pred             H----cCcHHHHHHHhCC
Confidence            5    4899999999864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.4e-24  Score=172.02  Aligned_cols=118  Identities=17%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCC-cHHHHHHHcC
Q 012836           78 FSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRE-TVLHLAVKNN  156 (455)
Q Consensus        78 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~Lh~A~~~~  156 (455)
                      .++||+|+..|+.+++++|+++|+++ +.+|.+|.||||.|+ .|+.+++++|+++ +.+++..+..+. ||||+|++.|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-ccccccccccccc-ccccccccccccccccccccccc
Confidence            34555555555555555555555554 445555555555442 4555555555554 444555544443 3555555555


Q ss_pred             CHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHH
Q 012836          157 QFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLL  204 (455)
Q Consensus       157 ~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll  204 (455)
                      +.+++++|+++|+++      +.+|.+|+||||+|+..|+.+++++|+
T Consensus        81 ~~~~v~~Ll~~ga~~------~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          81 FLDTLVVLHRAGARL------DVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CHHHHHHHHHHTCCS------SCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccc------ccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            555566555555554      555556666666666666666665554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-23  Score=169.10  Aligned_cols=121  Identities=21%  Similarity=0.247  Sum_probs=106.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCcchhhhcCCCCcHHHHHHHcCCHHHHHHHHhcCccccccCCCCCC-CHHHHHHH
Q 012836           42 SAGNPLHVASAYGHVDFVKEIIRLKPDFAKEVNQDGFSPMHMASANGQIDVVRGLMKFDQKLCHLQGPERK-TPLHFAAI  120 (455)
Q Consensus        42 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~-tpLh~A~~  120 (455)
                      ++.++||.|+..|+.++|++|++++.+ ++.+|..|.||||.|+ .|+.+++++|+++++++ +.++..+. ||||+|+.
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            367899999999999999999999877 5778899999999764 78999999999999887 66666665 69999999


Q ss_pred             hCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHH
Q 012836          121 KGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVD  166 (455)
Q Consensus       121 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  166 (455)
                      .|+.+++++|++. |.+++..|.+|+||||+|+++|+.+++++|++
T Consensus        79 ~g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999997 88899999999999999999999999999864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=5.4e-24  Score=171.28  Aligned_cols=105  Identities=24%  Similarity=0.281  Sum_probs=67.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCH
Q 012836           79 SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF  158 (455)
Q Consensus        79 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~  158 (455)
                      |||++|+..|+.+++++|+++|.++ +.+|.+|+||||+|+..|+.+++++|+++ +.+++..|.+|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCch
Confidence            5666666666666666666666655 55666666666666666666666666655 556666666666666666666666


Q ss_pred             HHHHHHHHHhhhhcccccccccCCCCCcHHHHH
Q 012836          159 EVVRALVDWIRDVKKENILNMKDKQGNTALHLA  191 (455)
Q Consensus       159 ~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A  191 (455)
                      +++++|+++|+++      +.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~Gad~------~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADK------TVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCS------SSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccc------eeeCCCCCCHHHHH
Confidence            6666666666655      66666666666665

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=3.7e-23  Score=166.33  Aligned_cols=106  Identities=29%  Similarity=0.367  Sum_probs=101.8

Q ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHH
Q 012836          112 KTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLA  191 (455)
Q Consensus       112 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A  191 (455)
                      .|||++|++.|+.+++++|+++ |.+++..|.+|+||||+|+..|+.++++++++.|+++      +.+|.+|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di------n~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI------NAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT------TCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhcccccccccccccccccccccccccccccccccee------eecccccccchhhh
Confidence            3799999999999999999997 8899999999999999999999999999999999887      89999999999999


Q ss_pred             HhcCChHHHHHHHhcCCCCCCCccccccCCCCCCHHHHH
Q 012836          192 TWKRECQVVELLLSHGANASGGLEVNATNHSGLTALDVL  230 (455)
Q Consensus       192 ~~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~~g~t~l~~a  230 (455)
                      +..|+.+++++|+++|+      +++.+|.+|+||||+|
T Consensus        76 ~~~~~~~~v~~Ll~~Ga------d~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGA------DKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HTTTCCHHHHHHHTTCC------CSSSSSSSTCCCCCTC
T ss_pred             hhcCchhhhhhhhcccc------cceeeCCCCCCHHHHH
Confidence            99999999999999998      8999999999999988

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.3e-23  Score=194.95  Aligned_cols=180  Identities=10%  Similarity=0.047  Sum_probs=122.5

Q ss_pred             CcccCHHHHHHHHcCCHHHHHHHHhcCCcccCCCCCCCCChHHHHHHHcCCH---HHHHHHHHcCCcchhhhcCCCCcHH
Q 012836            5 STRMDRRLIAAALTGDVQTLQQLFVENPLILHTPAFASAGNPLHVASAYGHV---DFVKEIIRLKPDFAKEVNQDGFSPM   81 (455)
Q Consensus         5 ~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~~g~tpL   81 (455)
                      |+.|+||||.||..|+.++|+.|++.+.+....  +..|+||||.||..++.   +.++.|++.........|..|+|||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~--d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~l  181 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL  181 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcC--CcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHH
Confidence            788999999999999999999999998876543  34599999999987752   2222333322223556789999999


Q ss_pred             HHHHHcCC----HH--------HHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHH--hcCccccccccCCCc
Q 012836           82 HMASANGQ----ID--------VVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLS--AYGECAEDVSVQRET  147 (455)
Q Consensus        82 h~Aa~~g~----~~--------iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t  147 (455)
                      |+++..+.    ..        ++.++++.+..........+.++++.+........+..+..  .....++.+|.+|+|
T Consensus       182 h~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~T  261 (301)
T d1sw6a_         182 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT  261 (301)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC
T ss_pred             HHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCC
Confidence            99886554    22        34455565555545556667777777665554444332211  112336788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHH
Q 012836          148 VLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT  192 (455)
Q Consensus       148 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~  192 (455)
                      |||+|++.|+.+++++|+++|+++      +.+|..|.||||+|+
T Consensus       262 pLh~A~~~g~~~iv~~Ll~~GAd~------~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         262 CLNIAARLGNISIVDALLDYGADP------FIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCCT------TCCCTTSCCGGGGTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCCHHHHcC
Confidence            999999999999999999999998      899999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-22  Score=164.13  Aligned_cols=123  Identities=27%  Similarity=0.276  Sum_probs=85.4

Q ss_pred             CHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHH
Q 012836          113 TPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLAT  192 (455)
Q Consensus       113 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~  192 (455)
                      ++|+.|+..|+.++++.|+++ |.+++..|.+|+||||+|+..|+.+++++|++.|++.      +.+|.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~------~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV------NAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT------TCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCcccccccccccccccccccccccccccccccccc------ccccccCcccccccc
Confidence            456777777777777777765 6667777777777777777777777777777776665      677777777777777


Q ss_pred             hcCChHHHHHHHhcCCCCCCCccccccCC-CCCCHHHHHhhCCCCcCchhHHHHHHHhc
Q 012836          193 WKRECQVVELLLSHGANASGGLEVNATNH-SGLTALDVLLSFPSEAGDREIEEIFWSAG  250 (455)
Q Consensus       193 ~~~~~~iv~~Ll~~ga~~~~~v~~~~~n~-~g~t~l~~a~~~~~~~~~~~i~~~L~~~g  250 (455)
                      ..|+.+++++|+++|+      +++..+. .|+||++++..  .+.++.+++++|+..+
T Consensus        76 ~~g~~~~v~~Ll~~ga------~v~~~~~~~~~~~~~~~~a--~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGA------AVFAMTYSDMQTAADKCEE--MEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HTTCHHHHHHHHHTTC------CTTCCCSSSCCCHHHHCCS--SSTTCCCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCC------CcccccCCCCCCHHHHHHH--HHcChHHHHHHHHhHH
Confidence            7777777777777777      5665553 46777776632  2445667777776654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.9e-22  Score=163.16  Aligned_cols=120  Identities=22%  Similarity=0.179  Sum_probs=69.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHhcCccccccccCCCcHHHHHHHcCCH
Q 012836           79 SPMHMASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSAYGECAEDVSVQRETVLHLAVKNNQF  158 (455)
Q Consensus        79 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~~~~  158 (455)
                      ++|+.||..|+.+++++|+++++++ +.+|.+|+||||+|+..|+.+++++|++. +.+++..|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccc-ccccccccccCcccccccchhhHH
Confidence            3455566666666666666665554 55555666666666666666666666654 555555666666666666666666


Q ss_pred             HHHHHHHHHhhhhcccccccccC-CCCCcHHHHH--HhcCChHHHHHHHhc
Q 012836          159 EVVRALVDWIRDVKKENILNMKD-KQGNTALHLA--TWKRECQVVELLLSH  206 (455)
Q Consensus       159 ~~v~~Ll~~g~~~~~~~~~~~~d-~~G~T~Lh~A--~~~~~~~iv~~Ll~~  206 (455)
                      +++++|+++|+++      +.++ ..|+||++++  +..|+.+++++|++.
T Consensus        81 ~~v~~Ll~~ga~v------~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAV------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCT------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCc------ccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            6666666665554      4333 2355555444  344556666666543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.5e-20  Score=157.86  Aligned_cols=122  Identities=15%  Similarity=0.195  Sum_probs=85.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcCCcccCCC----CCCCCChHHHHHHHc---CCHHHHHHHHHcCCcchhhhcCCCCcHHH
Q 012836           10 RRLIAAALTGDVQTLQQLFVENPLILHTP----AFASAGNPLHVASAY---GHVDFVKEIIRLKPDFAKEVNQDGFSPMH   82 (455)
Q Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh   82 (455)
                      ..|+.|++.+|+..+..++.++.+.....    ....|+||||+|+..   |+.+++++|++.+.+ ++.+|..|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhccccc
Confidence            34678888899988888888765543221    122367777777763   556777777777766 4666777777777


Q ss_pred             HHHHcCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHhCCHHHHHHHHHh
Q 012836           83 MASANGQIDVVRGLMKFDQKLCHLQGPERKTPLHFAAIKGRVDVVSEMLSA  133 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  133 (455)
                      +||..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            777777777777777777776 66777777777777777777777777765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=9.8e-21  Score=159.00  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             HHHHcCCHHHHHHHHhcCcccc-----ccCCCCCCCHHHHHHHh---CCHHHHHHHHHhcCccccccccCCCcHHHHHHH
Q 012836           83 MASANGQIDVVRGLMKFDQKLC-----HLQGPERKTPLHFAAIK---GRVDVVSEMLSAYGECAEDVSVQRETVLHLAVK  154 (455)
Q Consensus        83 ~Aa~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~  154 (455)
                      .|++.++...+..++..+.+..     ...+..|+||||+|+..   |+.+++++|++. |.+++.+|.+|+||||+|++
T Consensus        12 ~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~A~~   90 (154)
T d1dcqa1          12 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCL   90 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhccccccccc
Confidence            3444444444444444433321     11234455555555542   445555555554 55555555556666666666


Q ss_pred             cCCHHHHHHHHHHhhhhcccccccccCCCCCcHHHHHHhcCChHHHHHHHhcCC
Q 012836          155 NNQFEVVRALVDWIRDVKKENILNMKDKQGNTALHLATWKRECQVVELLLSHGA  208 (455)
Q Consensus       155 ~~~~~~v~~Ll~~g~~~~~~~~~~~~d~~G~T~Lh~A~~~~~~~iv~~Ll~~ga  208 (455)
                      .|+.+++++|+++|+++      +.+|.+|+||||+|+..|+.+++++|++.++
T Consensus        91 ~~~~~~v~~Ll~~gad~------~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          91 TDNAECLKLLLRGKASI------EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             TTCHHHHHHHHHTTCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccCccc------cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            66666666666555554      5556666666666666666666666655544