Citrus Sinensis ID: 012838

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-----
MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSFHSLKDGAFPSNR
ccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccEEEEEcccHHHHHcHHHHHHHHHHccccccccccc
ccEEEccccccEEEEEEcHccccccccccccccccccEcccccccHHHHHHHHccccccccccccEEEEEEEcccccccccccccccccccccHHHcccHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEccHccHHHHHHHHHHcHHEEEHcccccccccccHHHHHcccEEEEEcccccccccccccccEEEEccccccEEHHHHccccEEEccccccHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHHHHHHHHccccEcEEEEEEcccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHccEEEcccccHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccccc
mkvqrlpnskTKMAFAAIIMKKAFhsasgqlsnspqgicNVRMSGEELLSRLLDRkwaltspdskihQIKLFTttekhgggplggisflnntcpflgddmimrdedrcfyvvrddllhplvngnkarkMDALLPLledhivtdlvtcggcqsaHATAVERGLKSHLllrgeqpqiltgynLISTIygkvtyvprthyAHRIEMLKSYANLvagnngdvvwCNEIFEASLTAQKSRASclgqmdahkgidncRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDagtgttavGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLkksslnevdgEIVHWvercrprkfgnvfEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKssfhslkdgafpsnr
mkvqrlpnsktKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWAltspdskihqIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSsfhslkdgafpsnr
MKVQRLPNSktkmafaaiimkkafHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFvvdagtgttavglglgaICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSFHSLKDGAFPSNR
*************AFAAIIMKKAF************GICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYK***************
**************FAA*********************************RLLDRKWALTSPDSKIHQI***************GISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS*************
*********KTKMAFAAIIMKKAFH********SPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSFHSLKDGAFPSNR
*KVQRLPNSKTKMAFAAIIMKKAFHS*SGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEK*GGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSFHSLKDG******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSFHSLKDGAFPSNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query455 2.2.26 [Sep-21-2011]
Q9WY68312 Putative 1-aminocycloprop yes no 0.6 0.875 0.258 2e-12
Q9V2L2330 Putative 1-aminocycloprop yes no 0.606 0.836 0.276 2e-11
O57809325 Putative 1-aminocycloprop yes no 0.615 0.861 0.252 1e-06
Q8U4R3329 Putative 1-aminocycloprop yes no 0.626 0.866 0.245 8e-06
A8GFZ8330 D-cysteine desulfhydrase yes no 0.619 0.854 0.236 2e-05
Q66BQ4330 D-cysteine desulfhydrase yes no 0.604 0.833 0.250 2e-05
A4TK60330 D-cysteine desulfhydrase yes no 0.604 0.833 0.250 2e-05
Q1CHC4330 D-cysteine desulfhydrase yes no 0.604 0.833 0.250 2e-05
Q8ZF73330 D-cysteine desulfhydrase yes no 0.604 0.833 0.250 2e-05
A7FJ17330 D-cysteine desulfhydrase yes no 0.604 0.833 0.250 2e-05
>sp|Q9WY68|1A1D_THEMA Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0225 PE=3 SV=1 Back     alignment and function desciption
 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 139/340 (40%), Gaps = 67/340 (19%)

Query: 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATA---VER--GLKS 164
           YV RDDL   + +GNK RK++ LL        T + TCGG QS HA A   V R  GLK 
Sbjct: 27  YVKRDDLTELVGSGNKIRKLEYLLWEALKKGATTVFTCGGLQSNHARATAYVSRRYGLKP 86

Query: 165 HLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEI 224
            L LR +  ++L G  L+  + G                    A +V  +  +    +EI
Sbjct: 87  VLFLR-KGEKVLNGNLLLDILLG--------------------AEIVEVSPEEYERIDEI 125

Query: 225 FEASLTAQKSRASCLGQMDAHKGIDNCR-KKVLIVNEGAGDAVALLGVFRLLQYLSQDHL 283
           F                 D HK +   + +KV ++ EG  +++   G F  +  +     
Sbjct: 126 F-----------------DVHKKMREKKGEKVYVIPEGGSNSLGAFGYFNAVLEMKDQLN 168

Query: 284 LGRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKR 343
           L    AI  V   G+G T  GL  G   L     V  + +      Y       + + KR
Sbjct: 169 LESFDAI--VCAVGSGGTIAGLSAGISFLEYHVPVVGVNVTTKNSDY------FVGKVKR 220

Query: 344 LFGFLLKKSSLNE----VDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVY 399
           +       S + E    V+  +   V+  R   +      ++E    +A + GI++DPVY
Sbjct: 221 II------SGMEEYGLRVNETVFEVVDDYRGPGYAIPSSEDVEILKEVASIEGIILDPVY 274

Query: 400 TLAAWE-MATLLSDEKLKQDADVVMLHTGGTLGMFGLAQR 438
           T  A+  M  +  +     + +V+ +HTGG  G+F  ++R
Sbjct: 275 TAKAFRGMIEMFRN----SEKNVLFIHTGGIFGLFAQSRR 310

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)
EC: 3EC: .EC: 5EC: .EC: 9EC: 9EC: .EC: 7
>sp|Q9V2L2|1A1D_PYRAB Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB00630 PE=3 SV=1 Back     alignment and function description
>sp|O57809|1A1D_PYRHO Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0054 PE=1 SV=2 Back     alignment and function description
>sp|Q8U4R3|1A1D_PYRFU Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0010 PE=3 SV=2 Back     alignment and function description
>sp|A8GFZ8|DCYD_SERP5 D-cysteine desulfhydrase OS=Serratia proteamaculans (strain 568) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|Q66BQ4|DCYD_YERPS D-cysteine desulfhydrase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|A4TK60|DCYD_YERPP D-cysteine desulfhydrase OS=Yersinia pestis (strain Pestoides F) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|Q1CHC4|DCYD_YERPN D-cysteine desulfhydrase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|Q8ZF73|DCYD_YERPE D-cysteine desulfhydrase OS=Yersinia pestis GN=dcyD PE=3 SV=1 Back     alignment and function description
>sp|A7FJ17|DCYD_YERP3 D-cysteine desulfhydrase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dcyD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
255547974442 trytophan synthase alpha subunit, putati 0.958 0.986 0.627 1e-148
224107725391 predicted protein [Populus trichocarpa] 0.846 0.984 0.684 1e-143
225424574455 PREDICTED: putative 1-aminocyclopropane- 0.914 0.914 0.641 1e-141
296081397488 unnamed protein product [Vitis vinifera] 0.914 0.852 0.641 1e-140
356538123432 PREDICTED: putative 1-aminocyclopropane- 0.923 0.972 0.574 1e-139
11994254 572 unnamed protein product [Arabidopsis tha 0.925 0.736 0.563 1e-136
357463189437 hypothetical protein MTR_3g086360 [Medic 0.914 0.951 0.567 1e-136
42565200427 Pyridoxal-5'-phosphate-dependent enzyme 0.925 0.985 0.563 1e-136
449435444487 PREDICTED: putative 1-aminocyclopropane- 0.920 0.860 0.568 1e-136
42572535433 Pyridoxal-5'-phosphate-dependent enzyme 0.925 0.972 0.554 1e-134
>gi|255547974|ref|XP_002515044.1| trytophan synthase alpha subunit, putative [Ricinus communis] gi|223546095|gb|EEF47598.1| trytophan synthase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 285/454 (62%), Positives = 345/454 (75%), Gaps = 18/454 (3%)

Query: 1   MKVQRLPNSKTKMAFAAIIMKKAFHSASGQLSNSPQGICNVRMSGEELLSRLLDRKWALT 60
           MK+QR  + KT    A   MK ++HS S       QG+  V++S E+L+S LL+RKW L 
Sbjct: 1   MKLQRW-SCKT----AITSMKCSYHSGS-------QGLSEVKLSSEKLMSNLLNRKWMLQ 48

Query: 61  SPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDR-CFYVVRDDLLHP 119
            P+++IHQI+L      H  G  G +SFLN++ PF GD M+ +D     FY+VRDDLLHP
Sbjct: 49  LPNTEIHQIRLSLAQGLHREGLFGDMSFLNDSHPFFGDHMMKKDSRHPSFYIVRDDLLHP 108

Query: 120 LVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV-----ERGLKSHLLLRGEQPQ 174
           LVNGNKARK+D L+PLL +H VTD+VTCGGCQSAHA AV     E GLKSHLLLRGEQP+
Sbjct: 109 LVNGNKARKLDGLIPLLVNHSVTDVVTCGGCQSAHAAAVAVSCAEIGLKSHLLLRGEQPE 168

Query: 175 ILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLTAQKS 234
           +LTGYNLIS++YGKVTYVPR  YAHR  MLK +A+LVAGNNG V+WCN+I E   T+Q  
Sbjct: 169 VLTGYNLISSVYGKVTYVPRHLYAHRESMLKIHADLVAGNNGQVLWCNDILETIFTSQTY 228

Query: 235 RASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVV 294
            +  +  MDA K ++N  K+VLIVNEGAGD VALLG  RL++YL Q HL G+KR +K +V
Sbjct: 229 SSLDMRTMDACKNVENHSKRVLIVNEGAGDVVALLGAIRLVEYLCQSHLFGKKRRVKLIV 288

Query: 295 DAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSL 354
           DAGTGTTA+GLGLGA+CLG+PWEVTA+ LVDTID +KQ+EK L+S F+  FGF L    L
Sbjct: 289 DAGTGTTAIGLGLGALCLGVPWEVTAVVLVDTIDAFKQREKCLVSNFRTRFGFNLIDHCL 348

Query: 355 NEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK 414
           NEV+  +VHWVER R RKFGNV EGE+EAC +IAQ TGILVDPVYTLAAWEMA  +S E+
Sbjct: 349 NEVNTGVVHWVERNRKRKFGNVLEGEMEACQQIAQQTGILVDPVYTLAAWEMAAHMSKEE 408

Query: 415 LKQDADVVMLHTGGTLGMFGLAQRYKSSFHSLKD 448
            + DAD+VMLHTGGTLGMFGLAQRYK+ FHSLKD
Sbjct: 409 REGDADIVMLHTGGTLGMFGLAQRYKTYFHSLKD 442

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107725|ref|XP_002314578.1| predicted protein [Populus trichocarpa] gi|222863618|gb|EEF00749.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424574|ref|XP_002282104.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081397|emb|CBI16830.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538123|ref|XP_003537554.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Glycine max] Back     alignment and taxonomy information
>gi|11994254|dbj|BAB01437.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357463189|ref|XP_003601876.1| hypothetical protein MTR_3g086360 [Medicago truncatula] gi|355490924|gb|AES72127.1| hypothetical protein MTR_3g086360 [Medicago truncatula] Back     alignment and taxonomy information
>gi|42565200|ref|NP_189241.3| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] gi|119935856|gb|ABM06014.1| At3g26115 [Arabidopsis thaliana] gi|332643599|gb|AEE77120.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449435444|ref|XP_004135505.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Cucumis sativus] gi|449517016|ref|XP_004165542.1| PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42572535|ref|NP_974363.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] gi|110737454|dbj|BAF00671.1| hypothetical protein [Arabidopsis thaliana] gi|332643600|gb|AEE77121.1| Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query455
TAIR|locus:2090345433 AT3G26115 [Arabidopsis thalian 0.854 0.898 0.550 7.6e-112
TAIR|locus:2007725401 D-CDES "AT1G48420" [Arabidopsi 0.118 0.134 0.339 1.8e-07
UNIPROTKB|P76316328 dcyD [Escherichia coli K-12 (t 0.156 0.216 0.363 4.7e-06
TIGR_CMR|CPS_4580319 CPS_4580 "putative D-cysteine 0.2 0.285 0.323 8.7e-06
UNIPROTKB|Q5LL69339 cuyA "L-cysteate sulfo-lyase" 0.136 0.182 0.380 1.2e-05
TIGR_CMR|SPO_A0158339 SPO_A0158 "ACC deaminase/D-cys 0.136 0.182 0.380 1.2e-05
TIGR_CMR|SPO_2657385 SPO_2657 "ACC deaminase/D-cyst 0.136 0.161 0.380 1.4e-05
UNIPROTKB|Q81NG1331 BAS3005 "Putative pyridoxal ph 0.156 0.214 0.363 1.5e-05
TIGR_CMR|BA_3236331 BA_3236 "pyridoxal phosphate-d 0.156 0.214 0.363 1.5e-05
UNIPROTKB|Q4KK38331 dcyD "D-cysteine desulfhydrase 0.380 0.522 0.255 2.7e-05
TAIR|locus:2090345 AT3G26115 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 230/418 (55%), Positives = 287/418 (68%)

Query:    43 MSGEELLSRLLDRKWALTSPDSKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIM 102
             +   E +S+LLDRKW L  P S I QI + +     G   +   SFLNNT P LGD+M  
Sbjct:    33 IDSREFVSKLLDRKWGLQCPASPIQQISVSSVK---G---IDKFSFLNNTRPHLGDEMSK 86

Query:   103 RDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAV---- 158
               +   FY++RDDLLHPLVNGNKARK+DALLPL+EDH VTDLVTCGGCQSAH  AV    
Sbjct:    87 SKQGSSFYILRDDLLHPLVNGNKARKLDALLPLVEDHKVTDLVTCGGCQSAHTAAVAVSC 146

Query:   159 -ERGLKSHLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGD 217
              ERGL+SHLLLRGEQP +LTGYNL+ST+YG V YVPR+ YA+R EML++YA+LVAG +G 
Sbjct:   147 AERGLRSHLLLRGEQPDVLTGYNLVSTMYGNVQYVPRSRYANREEMLRTYADLVAGEDGT 206

Query:   218 VVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQY 277
             V+W  +I E   T        + +MD    +   R+KVLIVNEGAGDA+ALLG+FRL+Q+
Sbjct:   207 VLWAKDIVEGRDTMN------VAKMDDFSSMKTSRRKVLIVNEGAGDALALLGMFRLVQH 260

Query:   278 LSQDHLLGRKRAIKFXXXXXXXXXXXXXXXXXICLGLPWEVTAIALVDTIDGYKQQEKNL 337
             LSQDHLLG+KR +KF                 + LGLPWE+ A+ L DT+  YK+ E +L
Sbjct:   261 LSQDHLLGKKRPVKFVVDAGTGTTAVGLGVAAMSLGLPWEINAVMLADTLKNYKRHEDHL 320

Query:   338 ISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPR------KFGNVFEGEIEACHRIAQLT 391
             I+EF R F   +  S L+    +++ W++R  PR      +FG V EGE+E C +IAQ T
Sbjct:   321 IAEFSRQFPGSVFCSGLDM--NQMIKWIDRQHPRNSFCSCRFGKVLEGEVEMCRKIAQET 378

Query:   392 GILVDPVYTLAAWEMAT-LLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSSFHSLKD 448
             G+LVDP+YTLAAWE AT L+ DEK    + VVMLHTGGTLGMFGLAQRYK+ F +LKD
Sbjct:   379 GVLVDPMYTLAAWETATELVQDEK---SSIVVMLHTGGTLGMFGLAQRYKTCFTNLKD 433
GO:0003824 "catalytic activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0008152 "metabolic process" evidence=IEA
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
TAIR|locus:2007725 D-CDES "AT1G48420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P76316 dcyD [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4580 CPS_4580 "putative D-cysteine desulfhydrase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LL69 cuyA "L-cysteate sulfo-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_A0158 SPO_A0158 "ACC deaminase/D-cysteine desulfhydrase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2657 SPO_2657 "ACC deaminase/D-cysteine desulfhydrase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q81NG1 BAS3005 "Putative pyridoxal phosphate-dependent deaminase" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3236 BA_3236 "pyridoxal phosphate-dependent deaminase, putative" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KK38 dcyD "D-cysteine desulfhydrase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.5080.1
hypothetical protein (391 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
COG2515323 COG2515, Acd, 1-aminocyclopropane-1-carboxylate de 8e-30
PRK03910331 PRK03910, PRK03910, D-cysteine desulfhydrase; Vali 2e-18
cd06449307 cd06449, ACCD, Aminocyclopropane-1-carboxylate dea 4e-16
TIGR01275318 TIGR01275, ACC_deam_rel, pyridoxal phosphate-depen 5e-16
PRK14045329 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxyl 1e-12
pfam00291295 pfam00291, PALP, Pyridoxal-phosphate dependent enz 3e-04
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information 
 Score =  117 bits (296), Expect = 8e-30
 Identities = 95/340 (27%), Positives = 133/340 (39%), Gaps = 57/340 (16%)

Query: 109 FYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH-----ATAVERGLK 163
            Y+ RDDL      GNK RK++ LL          LVT GG QS H     A A + GLK
Sbjct: 32  IYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLK 91

Query: 164 SHLLLRGEQPQILTGYN-LISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCN 222
             L+L   +   L   N L+S + G                    A + A + G  +  N
Sbjct: 92  CVLILENIEANYLLNGNLLLSKLMG--------------------AEVRAVDAGTDIGIN 131

Query: 223 EIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRL-LQYLSQD 281
              E      + +                  K  ++ EG    +  LG  RL L+   Q 
Sbjct: 132 ASAEELAEEVRKQG----------------GKPYVIPEGGSSPLGALGYVRLALEIAEQA 175

Query: 282 HLLGRKRAIKFVVDA-GTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISE 340
             L +      VV A G+G T  GL +G   LG   EV  I +    +  K+Q  NL   
Sbjct: 176 EQLLK---FDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQA 232

Query: 341 FKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYT 400
              L G        +E D   V   +      +G   E +IEA   +A+L GIL+DPVYT
Sbjct: 233 TAELLGLG------SEAD---VLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYT 283

Query: 401 -LAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRY 439
             A + +  L    +    + V+ +HTGG  G+F  + R 
Sbjct: 284 GKAMYGLIDLARKGEFPDGSPVLFIHTGGAPGLFAYSPRL 323

Length = 323
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated Back     alignment and domain information
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>gnl|CDD|172537 PRK14045, PRK14045, 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 455
COG2515323 Acd 1-aminocyclopropane-1-carboxylate deaminase [A 100.0
PRK03910331 D-cysteine desulfhydrase; Validated 100.0
TIGR01274337 ACC_deam 1-aminocyclopropane-1-carboxylate deamina 100.0
TIGR01275311 ACC_deam_rel pyridoxal phosphate-dependent enzymes 100.0
PRK12390337 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
PRK14045329 1-aminocyclopropane-1-carboxylate deaminase; Provi 100.0
cd06449307 ACCD Aminocyclopropane-1-carboxylate deaminase (AC 100.0
COG0133396 TrpB Tryptophan synthase beta chain [Amino acid tr 100.0
PRK04346397 tryptophan synthase subunit beta; Validated 100.0
PRK13028402 tryptophan synthase subunit beta; Provisional 100.0
PLN02618410 tryptophan synthase, beta chain 100.0
PRK07591421 threonine synthase; Validated 100.0
PRK13802695 bifunctional indole-3-glycerol phosphate synthase/ 100.0
PRK13803610 bifunctional phosphoribosylanthranilate isomerase/ 100.0
TIGR00263385 trpB tryptophan synthase, beta subunit. Tryptophan 100.0
cd06448316 L-Ser-dehyd Serine dehydratase is a pyridoxal phos 100.0
PRK08197394 threonine synthase; Validated 100.0
PRK06381319 threonine synthase; Validated 100.0
PRK06260397 threonine synthase; Validated 100.0
PRK12483 521 threonine dehydratase; Reviewed 100.0
PRK08329347 threonine synthase; Validated 100.0
PLN02550 591 threonine dehydratase 100.0
PRK07048321 serine/threonine dehydratase; Validated 100.0
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 100.0
PRK08526403 threonine dehydratase; Provisional 100.0
PRK06110322 hypothetical protein; Provisional 100.0
COG1171347 IlvA Threonine dehydratase [Amino acid transport a 100.0
PRK07476322 eutB threonine dehydratase; Provisional 100.0
PRK09224 504 threonine dehydratase; Reviewed 100.0
PRK06352351 threonine synthase; Validated 100.0
PRK06382406 threonine dehydratase; Provisional 100.0
PLN02970328 serine racemase 100.0
TIGR02079409 THD1 threonine dehydratase. This model represents 100.0
cd01562304 Thr-dehyd Threonine dehydratase: The first step in 100.0
PRK06815317 hypothetical protein; Provisional 100.0
PRK08198404 threonine dehydratase; Provisional 100.0
cd01561291 CBS_like CBS_like: This subgroup includes Cystathi 100.0
PRK10717330 cysteine synthase A; Provisional 100.0
PRK05638442 threonine synthase; Validated 100.0
TIGR02991317 ectoine_eutB ectoine utilization protein EutB. Mem 100.0
TIGR01136299 cysKM cysteine synthases. This model discriminates 100.0
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 100.0
PRK08639420 threonine dehydratase; Validated 100.0
PRK08638333 threonine dehydratase; Validated 100.0
PRK06608338 threonine dehydratase; Provisional 100.0
PRK06450338 threonine synthase; Validated 100.0
COG0031300 CysK Cysteine synthase [Amino acid transport and m 100.0
PLN02569484 threonine synthase 100.0
PRK07409353 threonine synthase; Validated 100.0
TIGR01139298 cysK cysteine synthase A. This model distinguishes 100.0
cd06446365 Trp-synth_B Tryptophan synthase-beta: Trptophan sy 100.0
PRK06721352 threonine synthase; Reviewed 100.0
PRK07334403 threonine dehydratase; Provisional 100.0
cd01563324 Thr-synth_1 Threonine synthase is a pyridoxal phos 100.0
PRK08246310 threonine dehydratase; Provisional 100.0
PLN00011323 cysteine synthase 100.0
PRK08813349 threonine dehydratase; Provisional 100.0
PRK08206399 diaminopropionate ammonia-lyase; Provisional 100.0
PRK02991441 D-serine dehydratase; Provisional 100.0
PLN03013429 cysteine synthase 100.0
PLN02556368 cysteine synthase/L-3-cyanoalanine synthase 100.0
TIGR01137 454 cysta_beta cystathionine beta-synthase. Members of 100.0
TIGR01415419 trpB_rel pyridoxal-phosphate dependent TrpB-like e 100.0
TIGR01138290 cysM cysteine synthase B. Alternate name: O-acetyl 100.0
PRK11761296 cysM cysteine synthase B; Provisional 100.0
PLN02356423 phosphateglycerate kinase 100.0
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 100.0
PRK12391427 tryptophan synthase subunit beta; Reviewed 100.0
PLN02565322 cysteine synthase 100.0
TIGR01747376 diampropi_NH3ly diaminopropionate ammonia-lyase fa 100.0
TIGR00260328 thrC threonine synthase. Involved in threonine bio 100.0
TIGR03844398 cysteate_syn cysteate synthase. Members of this fa 100.0
KOG1250457 consensus Threonine/serine dehydratases [Amino aci 100.0
cd06447404 D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph 100.0
TIGR02035431 D_Ser_am_lyase D-serine ammonia-lyase. This family 100.0
KOG1395477 consensus Tryptophan synthase beta chain [Amino ac 100.0
TIGR03528396 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem 100.0
PF00291306 PALP: Pyridoxal-phosphate dependent enzyme; InterP 100.0
KOG1251323 consensus Serine racemase [Signal transduction mec 100.0
COG0498411 ThrC Threonine synthase [Amino acid transport and 100.0
KOG1252362 consensus Cystathionine beta-synthase and related 100.0
KOG1481391 consensus Cysteine synthase [Amino acid transport 99.97
COG1350432 Predicted alternative tryptophan synthase beta-sub 99.91
PRK09225462 threonine synthase; Validated 99.89
cd01560460 Thr-synth_2 Threonine synthase catalyzes the final 99.88
COG3048443 DsdA D-serine dehydratase [Amino acid transport an 99.41
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-52  Score=404.26  Aligned_cols=312  Identities=29%  Similarity=0.362  Sum_probs=261.1

Q ss_pred             cccchhhccccccccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCE
Q 012838           64 SKIHQIKLFTTTEKHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTD  143 (455)
Q Consensus        64 ~~~~~~~~~~~~~~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~  143 (455)
                      +.|+|+.+.+     ++|||.++  +|++ .++         |.+||+||||+.|+..||||+||+++++.+|.+.|+++
T Consensus         4 ~rf~R~~l~~-----~pTPiq~L--~rls-~~l---------g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dT   66 (323)
T COG2515           4 SRFPRMELIF-----GPTPIQKL--PRLS-AHL---------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADT   66 (323)
T ss_pred             ccCCccccCC-----CCChhhhH--HHHH-Hhc---------CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcE
Confidence            5667776644     89999999  9998 544         68999999999988789999999999999999999999


Q ss_pred             EEecCchhHHHH-----HHHHhCCeEEEEecCCC-ccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCC
Q 012838          144 LVTCGGCQSAHA-----TAVERGLKSHLLLRGEQ-PQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNG  216 (455)
Q Consensus       144 VVt~G~~~sNha-----~Aa~~Gl~~~iv~~~~~-~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g  216 (455)
                      +||+|+.||||+     +|+++|++|+.++.... .-...+|.++.+.+|+ ++.++.+.+.......+.          
T Consensus        67 lvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~----------  136 (323)
T COG2515          67 LVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEE----------  136 (323)
T ss_pred             EEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHH----------
Confidence            999999999998     35699999999997654 1123467788899999 999987643211111111          


Q ss_pred             CccchhhhhHHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeC
Q 012838          217 DVVWCNEIFEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDA  296 (455)
Q Consensus       217 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpv  296 (455)
                                                 .++++...+.+||+||+|++||.+..||..+++||.+|.+.- -.+|.||+|+
T Consensus       137 ---------------------------~~e~~~~~g~kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~-~~fD~vVva~  188 (323)
T COG2515         137 ---------------------------LAEEVRKQGGKPYVIPEGGSSPLGALGYVRLALEIAEQAEQL-LKFDSVVVAP  188 (323)
T ss_pred             ---------------------------HHHHHHhcCCCCcEeccCCcCccccccHHHHHHHHHHHHhhc-cCCCEEEEeC
Confidence                                       122334568899999999999999999999999999998511 4799999999


Q ss_pred             CCcchHHHHHHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeC
Q 012838          297 GTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNV  376 (455)
Q Consensus       297 GtGgt~~Gl~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  376 (455)
                      |||||.+|+..++..++++++||||.+.++....+.++..+....++.++..         .+..+.+.++++.++|+++
T Consensus       189 gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~---------~~~~v~~~~dy~~~~Yg~p  259 (323)
T COG2515         189 GSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLG---------SEADVLLSDDYHHPGYGKP  259 (323)
T ss_pred             CCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCC---------CCceEEEEecccCCccCCc
Confidence            9999999999999999999999999999988877777777777777766542         1234567888999999999


Q ss_pred             CHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhhHHHH
Q 012838          377 FEGEIEACHRIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLAQRY  439 (455)
Q Consensus       377 d~ei~~a~r~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~~~~~~~~~ry  439 (455)
                      ++|.+++++.+++.|||++||+|++++|.+++++++++ ++.+.+|++|||||.+++++|.+||
T Consensus       260 ~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~gl~~y~~~~  323 (323)
T COG2515         260 NEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAPGLFAYSPRL  323 (323)
T ss_pred             CHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCccchhcccccC
Confidence            99999999999999999999999999999999998875 6677889999999999999987764

>PRK03910 D-cysteine desulfhydrase; Validated Back     alignment and domain information
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase Back     alignment and domain information
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family Back     alignment and domain information
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional Back     alignment and domain information
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia Back     alignment and domain information
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PRK13028 tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PLN02618 tryptophan synthase, beta chain Back     alignment and domain information
>PRK07591 threonine synthase; Validated Back     alignment and domain information
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional Back     alignment and domain information
>TIGR00263 trpB tryptophan synthase, beta subunit Back     alignment and domain information
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia Back     alignment and domain information
>PRK08197 threonine synthase; Validated Back     alignment and domain information
>PRK06381 threonine synthase; Validated Back     alignment and domain information
>PRK06260 threonine synthase; Validated Back     alignment and domain information
>PRK12483 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK08329 threonine synthase; Validated Back     alignment and domain information
>PLN02550 threonine dehydratase Back     alignment and domain information
>PRK07048 serine/threonine dehydratase; Validated Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06110 hypothetical protein; Provisional Back     alignment and domain information
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07476 eutB threonine dehydratase; Provisional Back     alignment and domain information
>PRK09224 threonine dehydratase; Reviewed Back     alignment and domain information
>PRK06352 threonine synthase; Validated Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>PLN02970 serine racemase Back     alignment and domain information
>TIGR02079 THD1 threonine dehydratase Back     alignment and domain information
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen Back     alignment and domain information
>PRK06815 hypothetical protein; Provisional Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase Back     alignment and domain information
>PRK10717 cysteine synthase A; Provisional Back     alignment and domain information
>PRK05638 threonine synthase; Validated Back     alignment and domain information
>TIGR02991 ectoine_eutB ectoine utilization protein EutB Back     alignment and domain information
>TIGR01136 cysKM cysteine synthases Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>PRK08638 threonine dehydratase; Validated Back     alignment and domain information
>PRK06608 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06450 threonine synthase; Validated Back     alignment and domain information
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02569 threonine synthase Back     alignment and domain information
>PRK07409 threonine synthase; Validated Back     alignment and domain information
>TIGR01139 cysK cysteine synthase A Back     alignment and domain information
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions Back     alignment and domain information
>PRK06721 threonine synthase; Reviewed Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate Back     alignment and domain information
>PRK08246 threonine dehydratase; Provisional Back     alignment and domain information
>PLN00011 cysteine synthase Back     alignment and domain information
>PRK08813 threonine dehydratase; Provisional Back     alignment and domain information
>PRK08206 diaminopropionate ammonia-lyase; Provisional Back     alignment and domain information
>PRK02991 D-serine dehydratase; Provisional Back     alignment and domain information
>PLN03013 cysteine synthase Back     alignment and domain information
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase Back     alignment and domain information
>TIGR01137 cysta_beta cystathionine beta-synthase Back     alignment and domain information
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme Back     alignment and domain information
>TIGR01138 cysM cysteine synthase B Back     alignment and domain information
>PRK11761 cysM cysteine synthase B; Provisional Back     alignment and domain information
>PLN02356 phosphateglycerate kinase Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>PRK12391 tryptophan synthase subunit beta; Reviewed Back     alignment and domain information
>PLN02565 cysteine synthase Back     alignment and domain information
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family Back     alignment and domain information
>TIGR00260 thrC threonine synthase Back     alignment and domain information
>TIGR03844 cysteate_syn cysteate synthase Back     alignment and domain information
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] Back     alignment and domain information
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia Back     alignment and domain information
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase Back     alignment and domain information
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase Back     alignment and domain information
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] Back     alignment and domain information
>PRK09225 threonine synthase; Validated Back     alignment and domain information
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis Back     alignment and domain information
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query455
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 1e-37
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 1e-35
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 5e-34
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 7e-32
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 Back     alignment and structure
 Score =  139 bits (351), Expect = 1e-37
 Identities = 62/335 (18%), Positives = 108/335 (32%), Gaps = 49/335 (14%)

Query: 110 YVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAH-----ATAVERGLKS 164
           Y+ RDD+    + GNK RK++ L+          L+T G  QS H     A A + GL  
Sbjct: 50  YIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHC 109

Query: 165 HLLLRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEI 224
             LL          Y           +  +      +               D     + 
Sbjct: 110 VALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT--------------DPDAQLQT 155

Query: 225 FEASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLL 284
               + AQ                     +  ++  G   A+  +G       ++Q    
Sbjct: 156 LATRIEAQG-------------------FRPYVIPVGGSSALGAMGYVESALEIAQQCEE 196

Query: 285 GRKRAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRL 344
               +   VV +G+  T  GL +G   L    E+  + +  ++   K +   L       
Sbjct: 197 VVGLS-SVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQ 255

Query: 345 FGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYT-LAA 403
                            +H  +      +G   +  +EA   +A L G+L+DPVYT  A 
Sbjct: 256 LAL---------TATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAM 306

Query: 404 WEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQR 438
             +   +S ++   D  ++ +HTGG   +F     
Sbjct: 307 AGLIDGISQKRFNDDGPILFIHTGGAPALFAYHPH 341
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
4d9b_A342 D-cysteine desulfhydrase; fold type II PLP-depende 100.0
1f2d_A341 1-aminocyclopropane-1-carboxylate deaminase; carbo 100.0
1j0a_A325 1-aminocyclopropane-1-carboxylate deaminase; PLP d 100.0
1tzj_A338 ACC deaminase, 1-aminocyclopropane-1-carboxylate d 100.0
4h27_A364 L-serine dehydratase/L-threonine deaminase; PLP de 100.0
3l6b_A346 Serine racemase; pyridoxal phosphate, PLP, isomera 100.0
2rkb_A318 Serine dehydratase-like; PLP bound enzyme, enzyme 100.0
2gn0_A342 Threonine dehydratase catabolic; TDCB, biodegradat 100.0
1p5j_A372 L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo 100.0
1v71_A323 Serine racemase, hypothetical protein C320.14 in c 100.0
1ve5_A311 Threonine deaminase; riken structural genomics/Pro 100.0
2d1f_A360 Threonine synthase; amino acid synthesis, pyridoxa 100.0
3dwg_A325 Cysteine synthase B; sulfur carrier protein comple 100.0
2v03_A303 Cysteine synthase B; pyridoxal phosphate, cysteine 100.0
3aey_A351 Threonine synthase; PLP, pyridoxal phosphate, lyas 100.0
4d9i_A398 Diaminopropionate ammonia-lyase; fold type II PLP- 100.0
2zsj_A352 Threonine synthase; PLP dependent enzyme, lyase; H 100.0
1x1q_A418 Tryptophan synthase beta chain; structural genomic 100.0
2egu_A308 Cysteine synthase; O-acetylserine sulfhydrase, str 100.0
1y7l_A316 O-acetylserine sulfhydrylase, O-acetylserine (thio 100.0
3iau_A366 Threonine deaminase; pyridoxal phosphate, amino-ac 100.0
1ve1_A304 O-acetylserine sulfhydrylase; PLP, transferase, ri 100.0
2o2e_A422 Tryptophan synthase beta chain; amino-acid biosynt 100.0
3tbh_A334 O-acetyl serine sulfhydrylase; cysteine synthase, 100.0
2pqm_A343 Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 100.0
1v8z_A388 Tryptophan synthase beta chain 1; beta+alpha, rike 100.0
4aec_A430 Cysteine synthase, mitochondrial; lyase, cysteine 100.0
3ss7_X442 D-serine dehydratase; type II fold, ALFA,beta-elim 100.0
1qop_B396 Tryptophan synthase beta chain; lyase, carbon-oxyg 100.0
2q3b_A313 Cysteine synthase A; pyridoxal-5'-phosphate, sulph 100.0
1z7w_A322 Cysteine synthase; transferase; HET: PLP; 2.20A {A 100.0
3vc3_A344 Beta-cyanoalnine synthase; beta-cyanoalanine synth 100.0
1tdj_A 514 Biosynthetic threonine deaminase; allostery, coope 100.0
1wkv_A389 Cysteine synthase; homodimer, open alpha/beta fold 100.0
1o58_A303 O-acetylserine sulfhydrylase; TM0665, structural g 100.0
1jbq_A435 B, cystathionine beta-synthase, serine sulfhydrase 100.0
1e5x_A486 Threonine synthase; threonine biosynthesis, PLP en 100.0
3pc3_A 527 CG1753, isoform A; CBS, synthase, PLP, heme, amino 100.0
1vb3_A428 Threonine synthase; PLP-dependent enzyme, lyase; H 99.97
1kl7_A514 Threonine synthase; threonine synthesis, pyridoxal 99.94
4f4f_A468 Threonine synthase; structural genomics, niaid, na 99.93
3v7n_A487 Threonine synthase; ssgcid, structural genomics, s 99.92
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Back     alignment and structure
Probab=100.00  E-value=2e-51  Score=416.89  Aligned_cols=299  Identities=22%  Similarity=0.289  Sum_probs=241.8

Q ss_pred             ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH-
Q 012838           77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA-  155 (455)
Q Consensus        77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha-  155 (455)
                      ..++|||+++  ++|+ +.+         |.+||+|+||+|++.+||||+|++.+++.+|++.|+++||++|+++|||+ 
T Consensus        29 ~~~~TPL~~~--~~l~-~~~---------g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~   96 (342)
T 4d9b_A           29 IGAPTPLEYL--PRLS-DYL---------GREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVR   96 (342)
T ss_dssp             SCSCCCEEEC--HHHH-HHH---------TSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHH
T ss_pred             cCCCCceeEh--hhhH-Hhh---------CCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHH
Confidence            3499999999  8887 433         57999999999854469999999999999999999999999887778888 


Q ss_pred             ----HHHHhCCeEEEEecCCCcccc-----chhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhh
Q 012838          156 ----TAVERGLKSHLLLRGEQPQIL-----TGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIF  225 (455)
Q Consensus       156 ----~Aa~~Gl~~~iv~~~~~~~~~-----~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~  225 (455)
                          +|+++|++|+||||+..+...     .+|+.+++.||| |+.+++..  ++++..+..++                
T Consensus        97 alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~a~----------------  158 (342)
T 4d9b_A           97 QTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT--DPDAQLQTLAT----------------  158 (342)
T ss_dssp             HHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCS--SHHHHHHHHHH----------------
T ss_pred             HHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchh--hHHHHHHHHHH----------------
Confidence                356999999999998876431     246677899999 99998752  22233222121                


Q ss_pred             HHHHHhhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHH
Q 012838          226 EASLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGL  305 (455)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl  305 (455)
                                           ++.+.++.+|++|+++.||.+.+||.+++.||++|+... ..||+||+|+|||||++|+
T Consensus       159 ---------------------~l~~~~~~~~~~p~~~~n~~~~~G~~t~~~EI~~q~~~~-~~~d~vv~~vGtGGt~aGi  216 (342)
T 4d9b_A          159 ---------------------RIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEV-VGLSSVVVASGSAGTHAGL  216 (342)
T ss_dssp             ---------------------HHHHTTCCEEECCGGGCSHHHHHHHHHHHHHHHHHHTTT-CCCCEEEEEESSSHHHHHH
T ss_pred             ---------------------HHHhcCCceEEeCCCCCChHHHHHHHHHHHHHHHHHhcc-CCCCEEEEeCCCCHHHHHH
Confidence                                 122345578999999999999999999999999997311 3799999999999999999


Q ss_pred             HHHHHhcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHH
Q 012838          306 GLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACH  385 (455)
Q Consensus       306 ~~g~~~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r  385 (455)
                      +.+|+++++.++|||||++++.....+....+.+.+++.++..         ....+.+++++.++.|.|+|+|++++++
T Consensus       217 ~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~a~gl~~~---------~~~~~~~~~~~~d~~~~V~d~e~~~a~~  287 (342)
T 4d9b_A          217 AVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQLALT---------ATADIHLWDDYFAPGYGVPNDAGMEAVK  287 (342)
T ss_dssp             HHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHHHHHTTCC---------CCCCCEEECTTSTTCTTCCCHHHHHHHH
T ss_pred             HHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHHHHHcCCC---------CccceEEEecCCCceEecCCHHHHHHHH
Confidence            9999999999999999999987655444333444455555431         1235667788899999999999999999


Q ss_pred             HHHHHhCCcccccchHHHHHHHHHHhhhc-CCCCCeEEEEecCCCcchhhhH
Q 012838          386 RIAQLTGILVDPVYTLAAWEMATLLSDEK-LKQDADVVMLHTGGTLGMFGLA  436 (455)
Q Consensus       386 ~La~~eGI~veP~ysgaalAgl~~l~~~~-~~~g~~VV~I~TGG~~~~~~~~  436 (455)
                      +|++++||++||+|+|++++++++++++. +.++++||+||||||+|++++.
T Consensus       288 ~l~~~~gi~~epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~tGGn~~~~~~~  339 (342)
T 4d9b_A          288 LLASLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPALFAYH  339 (342)
T ss_dssp             HHHHHHSCCCCTTTHHHHHHHHHHHHHHTCSSSSSCEEEEECCCTTHHHHHS
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHcCCCCCCCeEEEEECCCccchhhcc
Confidence            99999999999999999999999988753 6678999999999999998853
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Back     alignment and structure
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Back     alignment and structure
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Back     alignment and structure
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* Back     alignment and structure
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* Back     alignment and structure
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Back     alignment and structure
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Back     alignment and structure
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Back     alignment and structure
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Back     alignment and structure
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Back     alignment and structure
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* Back     alignment and structure
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Back     alignment and structure
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Back     alignment and structure
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Back     alignment and structure
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Back     alignment and structure
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Back     alignment and structure
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Back     alignment and structure
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Back     alignment and structure
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Back     alignment and structure
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A Back     alignment and structure
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* Back     alignment and structure
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Back     alignment and structure
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* Back     alignment and structure
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Back     alignment and structure
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... Back     alignment and structure
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Back     alignment and structure
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Back     alignment and structure
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* Back     alignment and structure
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Back     alignment and structure
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Back     alignment and structure
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Back     alignment and structure
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Back     alignment and structure
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Back     alignment and structure
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Back     alignment and structure
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Back     alignment and structure
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Back     alignment and structure
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} Back     alignment and structure
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 455
d1f2da_341 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 3e-21
d1tyza_338 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 8e-17
d1j0aa_325 c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de 6e-15
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

 Score = 92.4 bits (228), Expect = 3e-21
 Identities = 63/336 (18%), Positives = 107/336 (31%), Gaps = 32/336 (9%)

Query: 109 FYVVRDDLLHPL-VNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHATAVERGLKSHLL 167
            Y  R+D    L   GNK RK++ ++P + +   T LV+ GG QS     V         
Sbjct: 34  VYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVA-------- 85

Query: 168 LRGEQPQILTGYNLISTIYGKVTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEA 227
                                V            E            +  +     + E 
Sbjct: 86  -----------ALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIED 134

Query: 228 SLTAQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRK 287
                  ++      +             I    +      LG       +    +    
Sbjct: 135 GFDIGMRKSFANALQELEDAGHKPYP---IPAGCSEHKYGGLGFVGFADEVINQEVELGI 191

Query: 288 RAIKFVVDAGTGTTAVGLGLGAICLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGF 347
           +  K VV   TG+T  G+  G    G   +V AI    T +  K+Q   + +   +L G 
Sbjct: 192 KFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGV 251

Query: 348 LLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQLTGILVDPVYTLAAWE-M 406
                   E + +      R     +G   EG IEA    A+  G+L DPVY   + + +
Sbjct: 252 --------EHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGL 303

Query: 407 ATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYKSS 442
             L+ ++  K  A+V+ +H GG   +   +  + + 
Sbjct: 304 IALIKEDYFKPGANVLYVHLGGAPALSAYSSFFPTK 339
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 Back     information, alignment and structure
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query455
d1j0aa_325 1-aminocyclopropane-1-carboxylate deaminase {Archa 100.0
d1v8za1386 Tryptophan synthase, beta-subunit {Archaeon Pyroco 100.0
d1f2da_341 1-aminocyclopropane-1-carboxylate deaminase {Yeast 100.0
d1qopb_390 Tryptophan synthase, beta-subunit {Salmonella typh 100.0
d1tyza_338 1-aminocyclopropane-1-carboxylate deaminase {Pseud 100.0
d1tdja1331 Threonine deaminase {Escherichia coli [TaxId: 562] 100.0
d1v71a1318 Hypothetical protein C320.14 (SPCC320.14, SPCC330. 100.0
d1p5ja_319 L-serine dehydratase {Human (Homo sapiens) [TaxId: 100.0
d1jbqa_355 Cystathionine beta-synthase {Human (Homo sapiens) 100.0
d1ve5a1310 Threonine deaminase {Thermus thermophilus [TaxId: 100.0
d1z7wa1320 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d2bhsa1292 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1ve1a1302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1o58a_293 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1fcja_302 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1y7la1310 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1e5xa_477 Threonine synthase {Mouse-ear cress (Arabidopsis t 100.0
d1v7ca_351 Threonine synthase {Thermus thermophilus [TaxId: 2 100.0
d1wkva1382 O-acetylserine sulfhydrylase (Cysteine synthase) { 100.0
d1vb3a1428 Threonine synthase {Escherichia coli [TaxId: 562]} 99.57
d1kl7a_511 Threonine synthase {Baker's yeast (Saccharomyces c 98.18
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7.9e-44  Score=352.05  Aligned_cols=299  Identities=24%  Similarity=0.305  Sum_probs=225.8

Q ss_pred             ccCCCCCcccccCCCCCCcCCCcccccCCCceEEEEeCCCCCCCcccchhhhHHhhHHHHHhCCCCEEEecCchhHHHH-
Q 012838           77 KHGGGPLGGISFLNNTCPFLGDDMIMRDEDRCFYVVRDDLLHPLVNGNKARKMDALLPLLEDHIVTDLVTCGGCQSAHA-  155 (455)
Q Consensus        77 ~~g~TPL~~~~~~~l~~~~~g~~~~~~~~g~~lylKrEdl~~p~~GsnK~Rkl~~~l~~A~~~G~~~VVt~G~~~sNha-  155 (455)
                      .+++|||+++  ++|+ +.+         |.+||+||||+||+.+||||+|++.++|.+|++.|.+.++++++++|||+ 
T Consensus        18 ~~~~TPL~~~--~~L~-~~~---------G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~~~~~~~~s~gN~g~   85 (325)
T d1j0aa_          18 IPWETPIQYL--PNIS-REI---------GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAF   85 (325)
T ss_dssp             CCSCCCEEEC--HHHH-HHH---------TSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHH
T ss_pred             CCCCCceeEH--HHhH-HHH---------CCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCCeeEEEeeCcchHHH
Confidence            5799999999  8888 544         67999999999886689999999999999999999999887766678887 


Q ss_pred             ----HHHHhCCeEEEEecCCCccccchhhHHHHhCCc-EEEeCCCchhhHHHHHHHHhhhhhcCCCCccchhhhhHHHHH
Q 012838          156 ----TAVERGLKSHLLLRGEQPQILTGYNLISTIYGK-VTYVPRTHYAHRIEMLKSYANLVAGNNGDVVWCNEIFEASLT  230 (455)
Q Consensus       156 ----~Aa~~Gl~~~iv~~~~~~~~~~~~~~~~~~~GA-V~~v~~~~~~~~~~~~~~~A~~la~~~g~~~w~~~~~~~~~~  230 (455)
                          +|+.+|++|++|||...+..+.  ..+....+. +..++...........+..+                      
T Consensus        86 a~A~~a~~~g~~~~i~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------------------  141 (325)
T d1j0aa_          86 VTGLAAKKLGLDAILVLRGKEELKGN--YLLDKIMGIETRVYDAKDSFELMKYAEEIA----------------------  141 (325)
T ss_dssp             HHHHHHHHTTCEEEEEEESCCCSCHH--HHHHHHTTCEEEEESCCSTTTHHHHHHHHH----------------------
T ss_pred             HHHHHHhhhcCceEEEeecccccchh--hhhccccceeEEeccCcccccchHHHHHHH----------------------
Confidence                3559999999999987765432  223333333 43343322221112211111                      


Q ss_pred             hhhhhccccccccccccccccCCeEEEecCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCcchHHHHHHHHH
Q 012838          231 AQKSRASCLGQMDAHKGIDNCRKKVLIVNEGAGDAVALLGVFRLLQYLSQDHLLGRKRAIKFVVDAGTGTTAVGLGLGAI  310 (455)
Q Consensus       231 ~~~~~~~~~~~~~~~~~l~~~~~~~y~ip~g~~np~~~~G~~t~~~Ei~eq~~~g~~~pD~vvvpvGtGgt~~Gl~~g~~  310 (455)
                                     ........++++++.++.++....|+.+++.|+.+|.  + ..||+||+|+|||++++|+..+++
T Consensus       142 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~-~~~d~vv~~~G~G~~~~gi~~~~~  203 (325)
T d1j0aa_         142 ---------------EELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQS--E-VKFDSIVVAAGSGGTLAGLSLGLS  203 (325)
T ss_dssp             ---------------HHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHC--C-CCCSEEEEEESSSHHHHHHHHHHH
T ss_pred             ---------------HHHHhhccCceeeecCCCccccccccchhhccccccc--c-cccceeecccccchhhhhHHHHHH
Confidence                           1112345677888888899999999999999999985  3 479999999999999999999999


Q ss_pred             hcCCCceEEEEeccCChhhHHHhhHhHHHHHHHHhcccccCCCcCccccccchheeeccCcEEEeCCHHHHHHHHHHHHH
Q 012838          311 CLGLPWEVTAIALVDTIDGYKQQEKNLISEFKRLFGFLLKKSSLNEVDGEIVHWVERCRPRKFGNVFEGEIEACHRIAQL  390 (455)
Q Consensus       311 ~~g~~~~vigVe~~g~~~~~~~~~~~l~~~~~~~ig~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~d~ei~~a~r~La~~  390 (455)
                      ..++.+++++|++.+............+.+..+..+.   +       ...+....+..++.+.++|+|++++|++|+++
T Consensus       204 ~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~  273 (325)
T d1j0aa_         204 ILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGV---K-------VEVRPELYDYSFGEYGKITGEVAQIIRKVGTR  273 (325)
T ss_dssp             HTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTC---C-------CCSCCEEEECSTTSTTCCCHHHHHHHHHHHHH
T ss_pred             hhCccccccccccccchhhhhhhhcccccccccccCC---C-------cccchhhhhceecceeechHHHHHHHHHHHHH
Confidence            9999999999999887654443333333333222221   1       11222345567778999999999999999999


Q ss_pred             hCCcccccchHHHHHHHHHHhhhcCCCCCeEEEEecCCCcchhhhHHHHH
Q 012838          391 TGILVDPVYTLAAWEMATLLSDEKLKQDADVVMLHTGGTLGMFGLAQRYK  440 (455)
Q Consensus       391 eGI~veP~ysgaalAgl~~l~~~~~~~g~~VV~I~TGG~~~~~~~~~ry~  440 (455)
                      |||++||+|||++++++++++++. ..+++||+|||||++|++.+.++..
T Consensus       274 eGI~~eP~~s~~a~~~l~~~~~~~-~~~~~vv~i~tGGl~g~~~~~~~~~  322 (325)
T d1j0aa_         274 EGIILDPVYTGKAFYGLVDLARKG-ELGEKILFIHTGGISGTFHYGDKLL  322 (325)
T ss_dssp             HSCCCCTTTHHHHHHHHHHHHHTT-CSCSEEEEEECCCHHHHHHTHHHHH
T ss_pred             cCCcCChhhHHHHHHHHHHHHHcC-CCCCeEEEEECCchHHHHHHHHHHH
Confidence            999999999999999999998764 3489999999999999999666554
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Back     information, alignment and structure
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Back     information, alignment and structure
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Back     information, alignment and structure
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure